Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407960 | XP_013446774.1 | 73.543 | 223 | 19 | 2 | 1 | 183 | 1 | 223 | 9.95e-99 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407960 | sp|F4KAB8|MCM6_ARATH | 59.227 | 233 | 53 | 4 | 1 | 191 | 1 | 233 | 1.07e-82 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407960 | A0A072TUF1 | 73.543 | 223 | 19 | 2 | 1 | 183 | 1 | 223 | 4.75e-99 | 315 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0142220 | Msa0407960 | 0.811542 | 6.645788e-51 | -8.615850e-47 |
| Msa0199240 | Msa0407960 | 0.863212 | 2.925526e-64 | -8.615850e-47 |
| Msa0218240 | Msa0407960 | 0.806549 | 7.794295e-50 | -8.615850e-47 |
| Msa0371730 | Msa0407960 | 0.810816 | 9.550481e-51 | -8.615850e-47 |
| Msa0394970 | Msa0407960 | 0.801011 | 1.100953e-48 | -8.615850e-47 |
| Msa0402290 | Msa0407960 | 0.827274 | 1.712529e-54 | -8.615850e-47 |
| Msa0407960 | Msa0417080 | 0.801503 | 8.733669e-49 | -8.615850e-47 |
| Msa0407960 | Msa0430420 | 0.828857 | 7.120817e-55 | -8.615850e-47 |
| Msa0407960 | Msa0435230 | 0.811800 | 5.841126e-51 | -8.615850e-47 |
| Msa0407960 | Msa0453120 | 0.807512 | 4.874253e-50 | -8.615850e-47 |
| Msa0407960 | Msa0466120 | 0.811481 | 6.852623e-51 | -8.615850e-47 |
| Msa0407960 | Msa0673450 | 0.826341 | 2.861428e-54 | -8.615850e-47 |
| Msa0407960 | Msa0726140 | 0.813195 | 2.893934e-51 | -8.615850e-47 |
| Msa0407960 | Msa0745060 | 0.800995 | 1.109317e-48 | -8.615850e-47 |
| Msa0407960 | Msa0766630 | 0.826429 | 2.726880e-54 | -8.615850e-47 |
| Msa0407960 | Msa0820850 | 0.809920 | 1.490499e-50 | -8.615850e-47 |
| Msa0407960 | Msa0824590 | 0.802093 | 6.607614e-49 | -8.615850e-47 |
| Msa0407960 | Msa0832340 | 0.810697 | 1.013108e-50 | -8.615850e-47 |
| Msa0407960 | Msa0844490 | 0.802189 | 6.312499e-49 | -8.615850e-47 |
| Msa0407960 | Msa0855760 | 0.813680 | 2.263768e-51 | -8.615850e-47 |
| Msa0407960 | Msa0861130 | 0.812186 | 4.812050e-51 | -8.615850e-47 |
| Msa0407960 | Msa0899450 | 0.806466 | 8.114874e-50 | -8.615850e-47 |
| Msa0407960 | Msa0959770 | 0.812900 | 3.359904e-51 | -8.615850e-47 |
| Msa0407960 | Msa0969450 | 0.800308 | 1.532036e-48 | -8.615850e-47 |
| Msa0407960 | Msa0999220 | 0.804307 | 2.300302e-49 | -8.615850e-47 |
| Msa0407960 | Msa1014540 | 0.835904 | 1.278933e-56 | -8.615850e-47 |
| Msa0407960 | Msa1023950 | 0.811951 | 5.413524e-51 | -8.615850e-47 |
| Msa0407960 | Msa1075540 | 0.821635 | 3.635322e-53 | -8.615850e-47 |
| Msa0407960 | Msa1075650 | 0.814441 | 1.538063e-51 | -8.615850e-47 |
| Msa0407960 | Msa1083840 | 0.804805 | 1.810880e-49 | -8.615850e-47 |
| Msa0407960 | Msa1121490 | 0.814815 | 1.271294e-51 | -8.615850e-47 |
| Msa0407960 | Msa1136090 | 0.827144 | 1.839724e-54 | -8.615850e-47 |
| Msa0407960 | Msa1149360 | 0.801684 | 8.017596e-49 | -8.615850e-47 |
| Msa0407960 | Msa1187950 | 0.828480 | 8.783691e-55 | -8.615850e-47 |
| Msa0407960 | Msa1228590 | 0.803721 | 3.046015e-49 | -8.615850e-47 |
| Msa0407960 | Msa1253000 | 0.832950 | 7.054053e-56 | -8.615850e-47 |
| Msa0407960 | Msa1270240 | 0.809875 | 1.524408e-50 | -8.615850e-47 |
| Msa0407960 | Msa1277660 | 0.806654 | 7.404604e-50 | -8.615850e-47 |
| Msa0407960 | Msa1283330 | 0.800325 | 1.519586e-48 | -8.615850e-47 |
| Msa0407960 | Msa1284680 | 0.819119 | 1.372787e-52 | -8.615850e-47 |
| Msa0407960 | Msa1397860 | 0.831061 | 2.066166e-55 | -8.615850e-47 |
| Msa0407960 | Msa1404000 | 0.805813 | 1.113582e-49 | -8.615850e-47 |
| Msa0407960 | Msa1451570 | 0.825187 | 5.375706e-54 | -8.615850e-47 |
| Msa0407960 | Msa1466540 | 0.814085 | 1.843727e-51 | -8.615850e-47 |
| Msa0355220 | Msa0407960 | 0.825164 | 5.443276e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407960 | MtrunA17_Chr8g0381871 | 73.543 | 223 | 19 | 2 | 1 | 183 | 1 | 223 | 9.15e-103 | 315 |
| Msa0407960 | MtrunA17_Chr2g0296441 | 63.348 | 221 | 43 | 4 | 1 | 183 | 1 | 221 | 2.00e-83 | 263 |
| Msa0407960 | MtrunA17_Chr4g0035581 | 28.261 | 138 | 87 | 2 | 53 | 184 | 204 | 335 | 3.35e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407960 | AT5G44635.1 | 59.227 | 233 | 53 | 4 | 1 | 191 | 1 | 233 | 1.08e-83 | 265 |
| Msa0407960 | AT5G44635.2 | 59.227 | 233 | 53 | 4 | 1 | 191 | 1 | 233 | 2.03e-83 | 265 |
| Msa0407960 | AT2G16440.1 | 26.708 | 161 | 95 | 4 | 42 | 183 | 185 | 341 | 3.88e-12 | 65.1 |
Find 54 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCAGAAACCTTCAGTATT+TGG | 0.172838 | 3_2:+47320790 | None:intergenic |
| CTAGGTCATTGGATGTTATT+TGG | 0.220922 | 3_2:-47320837 | Msa0407960:CDS |
| GGAAGCATTCAGCGGTTATT+TGG | 0.264993 | 3_2:-47322057 | Msa0407960:CDS |
| GCAACATTGATATCCTTGTT+AGG | 0.308947 | 3_2:+47321548 | None:intergenic |
| TTCAACCGATTCAGCGAAAA+TGG | 0.322211 | 3_2:-47322078 | Msa0407960:exon |
| TGGAGCAAGCTTTCTGTTAG+AGG | 0.339451 | 3_2:-47320757 | Msa0407960:CDS |
| GTCTTGTAGGTTAAGGGAAT+TGG | 0.342010 | 3_2:-47321255 | Msa0407960:intron |
| CTCCATAACAAACCTCTTGC+AGG | 0.345294 | 3_2:+47321601 | None:intergenic |
| TGGCTCTCTGCCTAGGTCAT+TGG | 0.347819 | 3_2:-47320848 | Msa0407960:CDS |
| GACAATTGGAATGTTATAGA+AGG | 0.359993 | 3_2:+47321526 | None:intergenic |
| TGCATACACCTCTTGACAAT+TGG | 0.367245 | 3_2:+47321512 | None:intergenic |
| TTCGATGTCTTGTAGGTTAA+GGG | 0.372915 | 3_2:-47321261 | Msa0407960:intron |
| CTGTTGTTACATGTAGCATT+TGG | 0.375529 | 3_2:+47320953 | None:intergenic |
| GGTAGGCTTGTATCTGTAAC+AGG | 0.380034 | 3_2:-47321218 | Msa0407960:CDS |
| AAGAGAGAAAATTTACTGAT+TGG | 0.389776 | 3_2:-47320912 | Msa0407960:CDS |
| TGCCTGCAAGAGGTTTGTTA+TGG | 0.403641 | 3_2:-47321603 | Msa0407960:CDS |
| CAACATTGATATCCTTGTTA+GGG | 0.416801 | 3_2:+47321549 | None:intergenic |
| TTGCAGGCATTCTGCAAGTA+AGG | 0.418482 | 3_2:+47321617 | None:intergenic |
| CTAGACACTTGAAAGTTCCT+TGG | 0.427198 | 3_2:+47321156 | None:intergenic |
| AAAGTTCCTTGGAGAAGCTC+AGG | 0.436172 | 3_2:+47321167 | None:intergenic |
| GTAGCATTTGGATAAATTGT+TGG | 0.469355 | 3_2:+47320965 | None:intergenic |
| CTATCTCTGATGAATATTTG+AGG | 0.491103 | 3_2:-47321749 | Msa0407960:intron |
| GGTTGATGAGAAAGCCGTTA+GGG | 0.498327 | 3_2:-47322036 | Msa0407960:CDS |
| AAAATTTACTGATTGGCAAA+GGG | 0.499023 | 3_2:-47320905 | Msa0407960:CDS |
| TGGCTACATCAGAGATTGGT+AGG | 0.504042 | 3_2:-47321235 | Msa0407960:CDS |
| TCAAGTGTCTAGAATGTGGT+GGG | 0.506639 | 3_2:-47321145 | Msa0407960:CDS |
| TGGTTGATGAGAAAGCCGTT+AGG | 0.508472 | 3_2:-47322037 | Msa0407960:CDS |
| GAAAATTTACTGATTGGCAA+AGG | 0.509024 | 3_2:-47320906 | Msa0407960:CDS |
| TTCTGTTAGAGGTTATGCCT+AGG | 0.511495 | 3_2:-47320746 | None:intergenic |
| CGGAAAACGACGTCGGAGCA+AGG | 0.528567 | 3_2:+47322119 | None:intergenic |
| AGAGCCAACAGGTATCTCAT+TGG | 0.528774 | 3_2:+47320864 | None:intergenic |
| GAATTGGCTACATCAGAGAT+TGG | 0.532287 | 3_2:-47321239 | Msa0407960:CDS |
| TTGGCAAAGGGTCAGAATGC+AGG | 0.537253 | 3_2:-47320893 | Msa0407960:CDS |
| TACCTGTTGGCTCTCTGCCT+AGG | 0.538550 | 3_2:-47320855 | Msa0407960:CDS |
| GACCTAGGCAGAGAGCCAAC+AGG | 0.539412 | 3_2:+47320853 | None:intergenic |
| ACTTGCAGAATGCCTGCAAG+AGG | 0.569621 | 3_2:-47321613 | Msa0407960:CDS |
| CTGTAACAGGAGTGGTAACA+AGG | 0.572546 | 3_2:-47321205 | Msa0407960:CDS |
| AAGCTTCTCTGAAACCTAGC+CGG | 0.579851 | 3_2:+47322099 | None:intergenic |
| GGAAAACGACGTCGGAGCAA+GGG | 0.580284 | 3_2:+47322120 | None:intergenic |
| ATAACATTCCAATTGTCAAG+AGG | 0.586980 | 3_2:-47321520 | Msa0407960:intron |
| CAAATAACATCCAATGACCT+AGG | 0.587771 | 3_2:+47320838 | None:intergenic |
| GTTCAACCTGAGCTTCTCCA+AGG | 0.607207 | 3_2:-47321173 | Msa0407960:CDS |
| GTTTCTGCATGAGTGTGGAA+TGG | 0.611006 | 3_2:-47320777 | Msa0407960:CDS |
| TTCAAGTGTCTAGAATGTGG+TGG | 0.616955 | 3_2:-47321146 | Msa0407960:CDS |
| GCGAAAATGGAAGCATTCAG+CGG | 0.630986 | 3_2:-47322065 | Msa0407960:exon |
| ACGTCCAATGAGATACCTGT+TGG | 0.635018 | 3_2:-47320868 | Msa0407960:CDS |
| CAAGTGTCTAGAATGTGGTG+GGG | 0.638582 | 3_2:-47321144 | Msa0407960:CDS |
| TGAAGGTTTCTGCATGAGTG+TGG | 0.647300 | 3_2:-47320782 | Msa0407960:CDS |
| TTATCATCAGAAATGAATGT+CGG | 0.648409 | 3_2:+47321572 | None:intergenic |
| GCTTGTATCTGTAACAGGAG+TGG | 0.649403 | 3_2:-47321213 | Msa0407960:CDS |
| ACTTTCAAGTGTCTAGAATG+TGG | 0.654394 | 3_2:-47321149 | Msa0407960:CDS |
| TTCTGATGATAACCCTAACA+AGG | 0.660674 | 3_2:-47321561 | Msa0407960:CDS |
| AGTGGTAACAAGGACAAGTG+AGG | 0.673592 | 3_2:-47321195 | Msa0407960:CDS |
| ACCTAGCCGGAAAACGACGT+CGG | 0.701293 | 3_2:+47322112 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCAATAAAAATCCAAT+TGG | + | chr3_2:47321155-47321174 | None:intergenic | 15.0% |
| !!! | CAAAATAATACCAAATTTTA+GGG | + | chr3_2:47321185-47321204 | None:intergenic | 15.0% |
| !!! | CTAAAATTTGGTATTATTTT+GGG | - | chr3_2:47321184-47321203 | Msa0407960:CDS | 15.0% |
| !! | NNNNNCAAAAATCAATGAAA+CGG | + | chr3_2:47321403-47321422 | None:intergenic | 15.0% |
| !! | AATTTCAATAAAAATCCAAT+TGG | + | chr3_2:47321155-47321174 | None:intergenic | 15.0% |
| !!! | CAAAATAATACCAAATTTTA+GGG | + | chr3_2:47321185-47321204 | None:intergenic | 15.0% |
| !!! | CTAAAATTTGGTATTATTTT+GGG | - | chr3_2:47321184-47321203 | Msa0407960:CDS | 15.0% |
| !! | NNNNNCAAAAATCAATGAAA+CGG | + | chr3_2:47321403-47321422 | None:intergenic | 15.0% |
| !!! | CTTTCTTAGATTTTTTCAAA+AGG | - | chr3_2:47320864-47320883 | Msa0407960:CDS | 20.0% |
| !!! | CCAAAATAATACCAAATTTT+AGG | + | chr3_2:47321186-47321205 | None:intergenic | 20.0% |
| !!! | CCTAAAATTTGGTATTATTT+TGG | - | chr3_2:47321183-47321202 | Msa0407960:CDS | 20.0% |
| !!! | GTGTTTTTAATTGAAATTTG+AGG | - | chr3_2:47321524-47321543 | Msa0407960:CDS | 20.0% |
| !!! | CTTTCTTAGATTTTTTCAAA+AGG | - | chr3_2:47320864-47320883 | Msa0407960:CDS | 20.0% |
| !!! | CCAAAATAATACCAAATTTT+AGG | + | chr3_2:47321186-47321205 | None:intergenic | 20.0% |
| !!! | CCTAAAATTTGGTATTATTT+TGG | - | chr3_2:47321183-47321202 | Msa0407960:CDS | 20.0% |
| !!! | GTGTTTTTAATTGAAATTTG+AGG | - | chr3_2:47321524-47321543 | Msa0407960:CDS | 20.0% |
| !!! | CAATTGTATCTGTTTTGTTT+TGG | - | chr3_2:47320961-47320980 | Msa0407960:CDS | 25.0% |
| ! | ATGTTCAAAATCAATGAACA+TGG | + | chr3_2:47321068-47321087 | None:intergenic | 25.0% |
| !!! | TGAGGTATTTTTTTTCCAAT+TGG | - | chr3_2:47321137-47321156 | Msa0407960:CDS | 25.0% |
| ! | ATTACTGAAACCCTAAAATT+TGG | - | chr3_2:47321172-47321191 | Msa0407960:CDS | 25.0% |
| ! | TTATCATCAGAAATGAATGT+CGG | + | chr3_2:47321299-47321318 | None:intergenic | 25.0% |
| ! | AATGAAACGGAAACAAAAAT+TGG | + | chr3_2:47321390-47321409 | None:intergenic | 25.0% |
| !! | AATCAGTAAATTTTCTCTCT+TGG | + | chr3_2:47321957-47321976 | None:intergenic | 25.0% |
| ! | AAGAGAGAAAATTTACTGAT+TGG | - | chr3_2:47321956-47321975 | Msa0407960:intron | 25.0% |
| !! | AAAATTTACTGATTGGCAAA+GGG | - | chr3_2:47321963-47321982 | Msa0407960:intron | 25.0% |
| !!! | CAATTGTATCTGTTTTGTTT+TGG | - | chr3_2:47320961-47320980 | Msa0407960:CDS | 25.0% |
| ! | ATGTTCAAAATCAATGAACA+TGG | + | chr3_2:47321068-47321087 | None:intergenic | 25.0% |
| !!! | TGAGGTATTTTTTTTCCAAT+TGG | - | chr3_2:47321137-47321156 | Msa0407960:CDS | 25.0% |
| ! | ATTACTGAAACCCTAAAATT+TGG | - | chr3_2:47321172-47321191 | Msa0407960:CDS | 25.0% |
| ! | TTATCATCAGAAATGAATGT+CGG | + | chr3_2:47321299-47321318 | None:intergenic | 25.0% |
| ! | AATGAAACGGAAACAAAAAT+TGG | + | chr3_2:47321390-47321409 | None:intergenic | 25.0% |
| !! | AATCAGTAAATTTTCTCTCT+TGG | + | chr3_2:47321957-47321976 | None:intergenic | 25.0% |
| ! | AAGAGAGAAAATTTACTGAT+TGG | - | chr3_2:47321956-47321975 | Msa0407960:intron | 25.0% |
| !! | AAAATTTACTGATTGGCAAA+GGG | - | chr3_2:47321963-47321982 | Msa0407960:intron | 25.0% |
| AAAATCAATGAACATGGTGT+TGG | + | chr3_2:47321062-47321081 | None:intergenic | 30.0% | |
| CTATCTCTGATGAATATTTG+AGG | - | chr3_2:47321119-47321138 | Msa0407960:CDS | 30.0% | |
| !! | TTTGTGTTGTTGTTGATGAT+AGG | - | chr3_2:47321222-47321241 | Msa0407960:CDS | 30.0% |
| CAACATTGATATCCTTGTTA+GGG | + | chr3_2:47321322-47321341 | None:intergenic | 30.0% | |
| GACAATTGGAATGTTATAGA+AGG | + | chr3_2:47321345-47321364 | None:intergenic | 30.0% | |
| ATAACATTCCAATTGTCAAG+AGG | - | chr3_2:47321348-47321367 | Msa0407960:intron | 30.0% | |
| !! | TGTAGTTGTGATTTAGTTTG+TGG | - | chr3_2:47321550-47321569 | Msa0407960:CDS | 30.0% |
| !! | GTAGTTGTGATTTAGTTTGT+GGG | - | chr3_2:47321551-47321570 | Msa0407960:CDS | 30.0% |
| ACAGCAATTCAAGTATAATG+AGG | - | chr3_2:47321763-47321782 | Msa0407960:CDS | 30.0% | |
| GTAGCATTTGGATAAATTGT+TGG | + | chr3_2:47321906-47321925 | None:intergenic | 30.0% | |
| ! | GAAAATTTACTGATTGGCAA+AGG | - | chr3_2:47321962-47321981 | Msa0407960:intron | 30.0% |
| AAAATCAATGAACATGGTGT+TGG | + | chr3_2:47321062-47321081 | None:intergenic | 30.0% | |
| CTATCTCTGATGAATATTTG+AGG | - | chr3_2:47321119-47321138 | Msa0407960:CDS | 30.0% | |
| !! | TTTGTGTTGTTGTTGATGAT+AGG | - | chr3_2:47321222-47321241 | Msa0407960:CDS | 30.0% |
| CAACATTGATATCCTTGTTA+GGG | + | chr3_2:47321322-47321341 | None:intergenic | 30.0% | |
| GACAATTGGAATGTTATAGA+AGG | + | chr3_2:47321345-47321364 | None:intergenic | 30.0% | |
| ATAACATTCCAATTGTCAAG+AGG | - | chr3_2:47321348-47321367 | Msa0407960:intron | 30.0% | |
| !! | TGTAGTTGTGATTTAGTTTG+TGG | - | chr3_2:47321550-47321569 | Msa0407960:CDS | 30.0% |
| !! | GTAGTTGTGATTTAGTTTGT+GGG | - | chr3_2:47321551-47321570 | Msa0407960:CDS | 30.0% |
| ACAGCAATTCAAGTATAATG+AGG | - | chr3_2:47321763-47321782 | Msa0407960:CDS | 30.0% | |
| GTAGCATTTGGATAAATTGT+TGG | + | chr3_2:47321906-47321925 | None:intergenic | 30.0% | |
| ! | GAAAATTTACTGATTGGCAA+AGG | - | chr3_2:47321962-47321981 | Msa0407960:intron | 30.0% |
| AATGAAGAACGAGAAGATGA+AGG | + | chr3_2:47320913-47320932 | None:intergenic | 35.0% | |
| TTCTGATGATAACCCTAACA+AGG | - | chr3_2:47321307-47321326 | Msa0407960:intron | 35.0% | |
| GCAACATTGATATCCTTGTT+AGG | + | chr3_2:47321323-47321342 | None:intergenic | 35.0% | |
| !! | TGATTTAGTTTGTGGGTGTA+AGG | - | chr3_2:47321558-47321577 | Msa0407960:CDS | 35.0% |
| !! | GATTTAGTTTGTGGGTGTAA+GGG | - | chr3_2:47321559-47321578 | Msa0407960:CDS | 35.0% |
| TTCGATGTCTTGTAGGTTAA+GGG | - | chr3_2:47321607-47321626 | Msa0407960:CDS | 35.0% | |
| ! | ACTTTCAAGTGTCTAGAATG+TGG | - | chr3_2:47321719-47321738 | Msa0407960:intron | 35.0% |
| CTGTTGTTACATGTAGCATT+TGG | + | chr3_2:47321918-47321937 | None:intergenic | 35.0% | |
| ! | TAAATTTTCTCTCTTGGCGA+AGG | + | chr3_2:47321951-47321970 | None:intergenic | 35.0% |
| CAAATAACATCCAATGACCT+AGG | + | chr3_2:47322033-47322052 | None:intergenic | 35.0% | |
| CTAGGTCATTGGATGTTATT+TGG | - | chr3_2:47322031-47322050 | Msa0407960:CDS | 35.0% | |
| ! | CAAGCTTTTCCAAATACTGA+AGG | - | chr3_2:47322069-47322088 | Msa0407960:exon | 35.0% |
| ATGCAGAAACCTTCAGTATT+TGG | + | chr3_2:47322081-47322100 | None:intergenic | 35.0% | |
| AATGAAGAACGAGAAGATGA+AGG | + | chr3_2:47320913-47320932 | None:intergenic | 35.0% | |
| TTCTGATGATAACCCTAACA+AGG | - | chr3_2:47321307-47321326 | Msa0407960:intron | 35.0% | |
| GCAACATTGATATCCTTGTT+AGG | + | chr3_2:47321323-47321342 | None:intergenic | 35.0% | |
| !! | TGATTTAGTTTGTGGGTGTA+AGG | - | chr3_2:47321558-47321577 | Msa0407960:CDS | 35.0% |
| !! | GATTTAGTTTGTGGGTGTAA+GGG | - | chr3_2:47321559-47321578 | Msa0407960:CDS | 35.0% |
| TTCGATGTCTTGTAGGTTAA+GGG | - | chr3_2:47321607-47321626 | Msa0407960:CDS | 35.0% | |
| ! | ACTTTCAAGTGTCTAGAATG+TGG | - | chr3_2:47321719-47321738 | Msa0407960:intron | 35.0% |
| CTGTTGTTACATGTAGCATT+TGG | + | chr3_2:47321918-47321937 | None:intergenic | 35.0% | |
| ! | TAAATTTTCTCTCTTGGCGA+AGG | + | chr3_2:47321951-47321970 | None:intergenic | 35.0% |
| CAAATAACATCCAATGACCT+AGG | + | chr3_2:47322033-47322052 | None:intergenic | 35.0% | |
| CTAGGTCATTGGATGTTATT+TGG | - | chr3_2:47322031-47322050 | Msa0407960:CDS | 35.0% | |
| ! | CAAGCTTTTCCAAATACTGA+AGG | - | chr3_2:47322069-47322088 | Msa0407960:exon | 35.0% |
| ATGCAGAAACCTTCAGTATT+TGG | + | chr3_2:47322081-47322100 | None:intergenic | 35.0% | |
| ! | TTCAACCGATTCAGCGAAAA+TGG | - | chr3_2:47320790-47320809 | Msa0407960:CDS | 40.0% |
| ! | TGCTTCCATTTTCGCTGAAT+CGG | + | chr3_2:47320798-47320817 | None:intergenic | 40.0% |
| !!! | GAAAGCGTTTTCAACCCTAA+CGG | + | chr3_2:47320849-47320868 | None:intergenic | 40.0% |
| GGAATGAACTCTATTCGAAG+CGG | - | chr3_2:47321009-47321028 | Msa0407960:intron | 40.0% | |
| TGCATACACCTCTTGACAAT+TGG | + | chr3_2:47321359-47321378 | None:intergenic | 40.0% | |
| GTATGTGTTCGATGTCTTGT+AGG | - | chr3_2:47321600-47321619 | Msa0407960:CDS | 40.0% | |
| GTTCGATGTCTTGTAGGTTA+AGG | - | chr3_2:47321606-47321625 | Msa0407960:CDS | 40.0% | |
| GTCTTGTAGGTTAAGGGAAT+TGG | - | chr3_2:47321613-47321632 | Msa0407960:CDS | 40.0% | |
| GAATTGGCTACATCAGAGAT+TGG | - | chr3_2:47321629-47321648 | Msa0407960:intron | 40.0% | |
| CTAGACACTTGAAAGTTCCT+TGG | + | chr3_2:47321715-47321734 | None:intergenic | 40.0% | |
| ! | TTCAAGTGTCTAGAATGTGG+TGG | - | chr3_2:47321722-47321741 | Msa0407960:intron | 40.0% |
| ! | TCAAGTGTCTAGAATGTGGT+GGG | - | chr3_2:47321723-47321742 | Msa0407960:intron | 40.0% |
| ! | TTCAACCGATTCAGCGAAAA+TGG | - | chr3_2:47320790-47320809 | Msa0407960:CDS | 40.0% |
| ! | TGCTTCCATTTTCGCTGAAT+CGG | + | chr3_2:47320798-47320817 | None:intergenic | 40.0% |
| !!! | GAAAGCGTTTTCAACCCTAA+CGG | + | chr3_2:47320849-47320868 | None:intergenic | 40.0% |
| GGAATGAACTCTATTCGAAG+CGG | - | chr3_2:47321009-47321028 | Msa0407960:intron | 40.0% | |
| TGCATACACCTCTTGACAAT+TGG | + | chr3_2:47321359-47321378 | None:intergenic | 40.0% | |
| GTATGTGTTCGATGTCTTGT+AGG | - | chr3_2:47321600-47321619 | Msa0407960:CDS | 40.0% | |
| GTTCGATGTCTTGTAGGTTA+AGG | - | chr3_2:47321606-47321625 | Msa0407960:CDS | 40.0% | |
| GTCTTGTAGGTTAAGGGAAT+TGG | - | chr3_2:47321613-47321632 | Msa0407960:CDS | 40.0% | |
| GAATTGGCTACATCAGAGAT+TGG | - | chr3_2:47321629-47321648 | Msa0407960:intron | 40.0% | |
| CTAGACACTTGAAAGTTCCT+TGG | + | chr3_2:47321715-47321734 | None:intergenic | 40.0% | |
| ! | TTCAAGTGTCTAGAATGTGG+TGG | - | chr3_2:47321722-47321741 | Msa0407960:intron | 40.0% |
| ! | TCAAGTGTCTAGAATGTGGT+GGG | - | chr3_2:47321723-47321742 | Msa0407960:intron | 40.0% |
| !! | AAGCTTCTCTGAAACCTAGC+CGG | + | chr3_2:47320772-47320791 | None:intergenic | 45.0% |
| !! | GCGAAAATGGAAGCATTCAG+CGG | - | chr3_2:47320803-47320822 | Msa0407960:CDS | 45.0% |
| !! | GGAAGCATTCAGCGGTTATT+TGG | - | chr3_2:47320811-47320830 | Msa0407960:CDS | 45.0% |
| !! | TGGTTGATGAGAAAGCCGTT+AGG | - | chr3_2:47320831-47320850 | Msa0407960:CDS | 45.0% |
| !! | GGTTGATGAGAAAGCCGTTA+GGG | - | chr3_2:47320832-47320851 | Msa0407960:CDS | 45.0% |
| TGGATCACCAGTTTCAGATC+TGG | - | chr3_2:47320981-47321000 | Msa0407960:intron | 45.0% | |
| ! | CCTTTGTCCAGATCTGAAAC+TGG | + | chr3_2:47320991-47321010 | None:intergenic | 45.0% |
| CCAGTTTCAGATCTGGACAA+AGG | - | chr3_2:47320988-47321007 | Msa0407960:intron | 45.0% | |
| TTGCAGGCATTCTGCAAGTA+AGG | + | chr3_2:47321254-47321273 | None:intergenic | 45.0% | |
| !! | TGCCTGCAAGAGGTTTGTTA+TGG | - | chr3_2:47321265-47321284 | Msa0407960:intron | 45.0% |
| CTCCATAACAAACCTCTTGC+AGG | + | chr3_2:47321270-47321289 | None:intergenic | 45.0% | |
| TGGCTACATCAGAGATTGGT+AGG | - | chr3_2:47321633-47321652 | Msa0407960:intron | 45.0% | |
| GGTAGGCTTGTATCTGTAAC+AGG | - | chr3_2:47321650-47321669 | Msa0407960:intron | 45.0% | |
| GCTTGTATCTGTAACAGGAG+TGG | - | chr3_2:47321655-47321674 | Msa0407960:intron | 45.0% | |
| CTGTAACAGGAGTGGTAACA+AGG | - | chr3_2:47321663-47321682 | Msa0407960:intron | 45.0% | |
| AGTGGTAACAAGGACAAGTG+AGG | - | chr3_2:47321673-47321692 | Msa0407960:intron | 45.0% | |
| AAAGTTCCTTGGAGAAGCTC+AGG | + | chr3_2:47321704-47321723 | None:intergenic | 45.0% | |
| ! | CAAGTGTCTAGAATGTGGTG+GGG | - | chr3_2:47321724-47321743 | Msa0407960:intron | 45.0% |
| ACGTCCAATGAGATACCTGT+TGG | - | chr3_2:47322000-47322019 | Msa0407960:intron | 45.0% | |
| AGAGCCAACAGGTATCTCAT+TGG | + | chr3_2:47322007-47322026 | None:intergenic | 45.0% | |
| TGAAGGTTTCTGCATGAGTG+TGG | - | chr3_2:47322086-47322105 | Msa0407960:five_prime_UTR | 45.0% | |
| GTTTCTGCATGAGTGTGGAA+TGG | - | chr3_2:47322091-47322110 | Msa0407960:five_prime_UTR | 45.0% | |
| TGGAGCAAGCTTTCTGTTAG+AGG | - | chr3_2:47322111-47322130 | Msa0407960:five_prime_UTR | 45.0% | |
| !! | AAGCTTCTCTGAAACCTAGC+CGG | + | chr3_2:47320772-47320791 | None:intergenic | 45.0% |
| !! | GCGAAAATGGAAGCATTCAG+CGG | - | chr3_2:47320803-47320822 | Msa0407960:CDS | 45.0% |
| !! | GGAAGCATTCAGCGGTTATT+TGG | - | chr3_2:47320811-47320830 | Msa0407960:CDS | 45.0% |
| !! | TGGTTGATGAGAAAGCCGTT+AGG | - | chr3_2:47320831-47320850 | Msa0407960:CDS | 45.0% |
| !! | GGTTGATGAGAAAGCCGTTA+GGG | - | chr3_2:47320832-47320851 | Msa0407960:CDS | 45.0% |
| TGGATCACCAGTTTCAGATC+TGG | - | chr3_2:47320981-47321000 | Msa0407960:intron | 45.0% | |
| ! | CCTTTGTCCAGATCTGAAAC+TGG | + | chr3_2:47320991-47321010 | None:intergenic | 45.0% |
| CCAGTTTCAGATCTGGACAA+AGG | - | chr3_2:47320988-47321007 | Msa0407960:intron | 45.0% | |
| TTGCAGGCATTCTGCAAGTA+AGG | + | chr3_2:47321254-47321273 | None:intergenic | 45.0% | |
| !! | TGCCTGCAAGAGGTTTGTTA+TGG | - | chr3_2:47321265-47321284 | Msa0407960:intron | 45.0% |
| CTCCATAACAAACCTCTTGC+AGG | + | chr3_2:47321270-47321289 | None:intergenic | 45.0% | |
| TGGCTACATCAGAGATTGGT+AGG | - | chr3_2:47321633-47321652 | Msa0407960:intron | 45.0% | |
| GGTAGGCTTGTATCTGTAAC+AGG | - | chr3_2:47321650-47321669 | Msa0407960:intron | 45.0% | |
| GCTTGTATCTGTAACAGGAG+TGG | - | chr3_2:47321655-47321674 | Msa0407960:intron | 45.0% | |
| CTGTAACAGGAGTGGTAACA+AGG | - | chr3_2:47321663-47321682 | Msa0407960:intron | 45.0% | |
| AGTGGTAACAAGGACAAGTG+AGG | - | chr3_2:47321673-47321692 | Msa0407960:intron | 45.0% | |
| AAAGTTCCTTGGAGAAGCTC+AGG | + | chr3_2:47321704-47321723 | None:intergenic | 45.0% | |
| ! | CAAGTGTCTAGAATGTGGTG+GGG | - | chr3_2:47321724-47321743 | Msa0407960:intron | 45.0% |
| ACGTCCAATGAGATACCTGT+TGG | - | chr3_2:47322000-47322019 | Msa0407960:intron | 45.0% | |
| AGAGCCAACAGGTATCTCAT+TGG | + | chr3_2:47322007-47322026 | None:intergenic | 45.0% | |
| TGAAGGTTTCTGCATGAGTG+TGG | - | chr3_2:47322086-47322105 | Msa0407960:five_prime_UTR | 45.0% | |
| GTTTCTGCATGAGTGTGGAA+TGG | - | chr3_2:47322091-47322110 | Msa0407960:five_prime_UTR | 45.0% | |
| TGGAGCAAGCTTTCTGTTAG+AGG | - | chr3_2:47322111-47322130 | Msa0407960:five_prime_UTR | 45.0% | |
| ACTTGCAGAATGCCTGCAAG+AGG | - | chr3_2:47321255-47321274 | Msa0407960:intron | 50.0% | |
| GTTCAACCTGAGCTTCTCCA+AGG | - | chr3_2:47321695-47321714 | Msa0407960:intron | 50.0% | |
| TTGGCAAAGGGTCAGAATGC+AGG | - | chr3_2:47321975-47321994 | Msa0407960:intron | 50.0% | |
| ACTTGCAGAATGCCTGCAAG+AGG | - | chr3_2:47321255-47321274 | Msa0407960:intron | 50.0% | |
| GTTCAACCTGAGCTTCTCCA+AGG | - | chr3_2:47321695-47321714 | Msa0407960:intron | 50.0% | |
| TTGGCAAAGGGTCAGAATGC+AGG | - | chr3_2:47321975-47321994 | Msa0407960:intron | 50.0% | |
| GGAAAACGACGTCGGAGCAA+GGG | + | chr3_2:47320751-47320770 | None:intergenic | 55.0% | |
| !! | CTTGCTCCGACGTCGTTTTC+CGG | - | chr3_2:47320750-47320769 | Msa0407960:CDS | 55.0% |
| ACCTAGCCGGAAAACGACGT+CGG | + | chr3_2:47320759-47320778 | None:intergenic | 55.0% | |
| !! | TACCTGTTGGCTCTCTGCCT+AGG | - | chr3_2:47322013-47322032 | Msa0407960:CDS | 55.0% |
| TGGCTCTCTGCCTAGGTCAT+TGG | - | chr3_2:47322020-47322039 | Msa0407960:CDS | 55.0% | |
| GGAAAACGACGTCGGAGCAA+GGG | + | chr3_2:47320751-47320770 | None:intergenic | 55.0% | |
| !! | CTTGCTCCGACGTCGTTTTC+CGG | - | chr3_2:47320750-47320769 | Msa0407960:CDS | 55.0% |
| ACCTAGCCGGAAAACGACGT+CGG | + | chr3_2:47320759-47320778 | None:intergenic | 55.0% | |
| !! | TACCTGTTGGCTCTCTGCCT+AGG | - | chr3_2:47322013-47322032 | Msa0407960:CDS | 55.0% |
| TGGCTCTCTGCCTAGGTCAT+TGG | - | chr3_2:47322020-47322039 | Msa0407960:CDS | 55.0% | |
| CGGAAAACGACGTCGGAGCA+AGG | + | chr3_2:47320752-47320771 | None:intergenic | 60.0% | |
| !! | TCCGACGTCGTTTTCCGGCT+AGG | - | chr3_2:47320755-47320774 | Msa0407960:CDS | 60.0% |
| GACCTAGGCAGAGAGCCAAC+AGG | + | chr3_2:47322018-47322037 | None:intergenic | 60.0% | |
| CGGAAAACGACGTCGGAGCA+AGG | + | chr3_2:47320752-47320771 | None:intergenic | 60.0% | |
| !! | TCCGACGTCGTTTTCCGGCT+AGG | - | chr3_2:47320755-47320774 | Msa0407960:CDS | 60.0% |
| GACCTAGGCAGAGAGCCAAC+AGG | + | chr3_2:47322018-47322037 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 47320747 | 47322143 | 47320747 | ID=Msa0407960;Name=Msa0407960 |
| chr3_2 | mRNA | 47320747 | 47322143 | 47320747 | ID=Msa0407960-mRNA-1;Parent=Msa0407960;Name=Msa0407960-mRNA-1;_AED=0.13;_eAED=0.13;_QI=62|0.5|0.4|1|1|1|5|0|213 |
| chr3_2 | exon | 47320747 | 47320987 | 47320747 | ID=Msa0407960-mRNA-1:exon:9103;Parent=Msa0407960-mRNA-1 |
| chr3_2 | exon | 47321116 | 47321268 | 47321116 | ID=Msa0407960-mRNA-1:exon:9102;Parent=Msa0407960-mRNA-1 |
| chr3_2 | exon | 47321521 | 47321646 | 47321521 | ID=Msa0407960-mRNA-1:exon:9101;Parent=Msa0407960-mRNA-1 |
| chr3_2 | exon | 47321750 | 47321794 | 47321750 | ID=Msa0407960-mRNA-1:exon:9100;Parent=Msa0407960-mRNA-1 |
| chr3_2 | exon | 47322005 | 47322143 | 47322005 | ID=Msa0407960-mRNA-1:exon:9099;Parent=Msa0407960-mRNA-1 |
| chr3_2 | five_prime_UTR | 47322082 | 47322143 | 47322082 | ID=Msa0407960-mRNA-1:five_prime_utr;Parent=Msa0407960-mRNA-1 |
| chr3_2 | CDS | 47322005 | 47322081 | 47322005 | ID=Msa0407960-mRNA-1:cds;Parent=Msa0407960-mRNA-1 |
| chr3_2 | CDS | 47321750 | 47321794 | 47321750 | ID=Msa0407960-mRNA-1:cds;Parent=Msa0407960-mRNA-1 |
| chr3_2 | CDS | 47321521 | 47321646 | 47321521 | ID=Msa0407960-mRNA-1:cds;Parent=Msa0407960-mRNA-1 |
| chr3_2 | CDS | 47321116 | 47321268 | 47321116 | ID=Msa0407960-mRNA-1:cds;Parent=Msa0407960-mRNA-1 |
| chr3_2 | CDS | 47320747 | 47320987 | 47320747 | ID=Msa0407960-mRNA-1:cds;Parent=Msa0407960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
