Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429880 | XP_024639750.2 | 84.783 | 46 | 7 | 0 | 1 | 46 | 830 | 875 | 2.32e-18 | 87.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429880 | G7IJ15 | 80.435 | 46 | 9 | 0 | 1 | 46 | 265 | 310 | 3.32e-16 | 79.3 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0102070 | Msa0429880 | 0.806978 | 6.325455e-50 | -8.615850e-47 |
| Msa0123810 | Msa0429880 | 0.803276 | 3.765148e-49 | -8.615850e-47 |
| Msa0142220 | Msa0429880 | 0.801609 | 8.304461e-49 | -8.615850e-47 |
| Msa0153910 | Msa0429880 | 0.820811 | 5.632434e-53 | -8.615850e-47 |
| Msa0227480 | Msa0429880 | 0.811378 | 7.212421e-51 | -8.615850e-47 |
| Msa0231000 | Msa0429880 | 0.808001 | 3.837301e-50 | -8.615850e-47 |
| Msa0384800 | Msa0429880 | 0.805902 | 1.066888e-49 | -8.615850e-47 |
| Msa0429880 | Msa0436780 | 0.804469 | 2.128427e-49 | -8.615850e-47 |
| Msa0429880 | Msa0452900 | 0.815627 | 8.389811e-52 | -8.615850e-47 |
| Msa0429880 | Msa0453120 | 0.811362 | 7.273774e-51 | -8.615850e-47 |
| Msa0429880 | Msa0506270 | 0.812220 | 4.730122e-51 | -8.615850e-47 |
| Msa0429880 | Msa0639610 | 0.800396 | 1.469699e-48 | -8.615850e-47 |
| Msa0429880 | Msa0697060 | 0.809093 | 2.243731e-50 | -8.615850e-47 |
| Msa0429880 | Msa0726140 | 0.801226 | 9.950656e-49 | -8.615850e-47 |
| Msa0429880 | Msa0743810 | 0.817477 | 3.231501e-52 | -8.615850e-47 |
| Msa0429880 | Msa0766630 | 0.816592 | 5.108555e-52 | -8.615850e-47 |
| Msa0429880 | Msa0783160 | 0.825961 | 3.522470e-54 | -8.615850e-47 |
| Msa0429880 | Msa0825860 | 0.807107 | 5.939302e-50 | -8.615850e-47 |
| Msa0429880 | Msa0885280 | 0.814640 | 1.390185e-51 | -8.615850e-47 |
| Msa0429880 | Msa0907260 | 0.837425 | 5.237022e-57 | -8.615850e-47 |
| Msa0429880 | Msa0956270 | 0.833150 | 6.292061e-56 | -8.615850e-47 |
| Msa0429880 | Msa0989060 | 0.811505 | 6.770709e-51 | -8.615850e-47 |
| Msa0429880 | Msa1016280 | 0.804737 | 1.871054e-49 | -8.615850e-47 |
| Msa0429880 | Msa1025360 | 0.802715 | 4.918633e-49 | -8.615850e-47 |
| Msa0429880 | Msa1044840 | 0.801526 | 8.638849e-49 | -8.615850e-47 |
| Msa0429880 | Msa1092990 | 0.806101 | 9.686011e-50 | -8.615850e-47 |
| Msa0429880 | Msa1100980 | 0.834057 | 3.735578e-56 | -8.615850e-47 |
| Msa0429880 | Msa1109440 | 0.814644 | 1.387261e-51 | -8.615850e-47 |
| Msa0429880 | Msa1135740 | 0.810121 | 1.348926e-50 | -8.615850e-47 |
| Msa0429880 | Msa1136090 | 0.819160 | 1.343405e-52 | -8.615850e-47 |
| Msa0429880 | Msa1146110 | 0.808725 | 2.689851e-50 | -8.615850e-47 |
| Msa0429880 | Msa1160670 | 0.803923 | 2.764222e-49 | -8.615850e-47 |
| Msa0429880 | Msa1187950 | 0.836542 | 8.804037e-57 | -8.615850e-47 |
| Msa0429880 | Msa1192640 | 0.823484 | 1.351076e-53 | -8.615850e-47 |
| Msa0429880 | Msa1249490 | 0.803348 | 3.638753e-49 | -8.615850e-47 |
| Msa0429880 | Msa1269670 | 0.805309 | 1.420646e-49 | -8.615850e-47 |
| Msa0429880 | Msa1270230 | 0.805422 | 1.345494e-49 | -8.615850e-47 |
| Msa0429880 | Msa1273230 | 0.800926 | 1.146061e-48 | -8.615850e-47 |
| Msa0429880 | Msa1283330 | 0.816294 | 5.955357e-52 | -8.615850e-47 |
| Msa0429880 | Msa1285930 | 0.822973 | 1.778529e-53 | -8.615850e-47 |
| Msa0429880 | Msa1287810 | 0.808528 | 2.963400e-50 | -8.615850e-47 |
| Msa0429880 | Msa1422180 | 0.803840 | 2.877123e-49 | -8.615850e-47 |
| Msa0270520 | Msa0429880 | 0.800817 | 1.206400e-48 | -8.615850e-47 |
| Msa0360510 | Msa0429880 | 0.815917 | 7.228534e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429880 | MtrunA17_Chr6g0476801 | 58.140 | 43 | 18 | 0 | 1 | 43 | 42 | 84 | 8.71e-14 | 59.3 |
| Msa0429880 | MtrunA17_Chr5g0419661 | 58.140 | 43 | 18 | 0 | 1 | 43 | 42 | 84 | 1.22e-13 | 59.3 |
| Msa0429880 | MtrunA17_Chr7g0239401 | 58.140 | 43 | 18 | 0 | 1 | 43 | 45 | 87 | 1.28e-13 | 58.9 |
| Msa0429880 | MtrunA17_Chr3g0091111 | 58.140 | 43 | 18 | 0 | 1 | 43 | 42 | 84 | 1.35e-13 | 58.5 |
| Msa0429880 | MtrunA17_Chr2g0318091 | 58.140 | 43 | 18 | 0 | 1 | 43 | 67 | 109 | 2.56e-13 | 58.5 |
| Msa0429880 | MtrunA17_Chr3g0094391 | 59.524 | 42 | 17 | 0 | 1 | 42 | 82 | 123 | 5.73e-13 | 58.2 |
| Msa0429880 | MtrunA17_Chr5g0413121 | 60.526 | 38 | 15 | 0 | 6 | 43 | 67 | 104 | 2.77e-12 | 55.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 30 sgRNAs with CRISPR-Local
Find 377 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAGGAAATTCTTCAGATTT+AGG | 0.105712 | 3_2:+81457598 | Msa0429880:five_prime_UTR |
| TTAAAATTACGTACATTTAA+AGG | 0.170390 | 3_2:-81462344 | None:intergenic |
| GAGGAAATTCTTCAGATTTA+GGG | 0.305953 | 3_2:+81457599 | Msa0429880:five_prime_UTR |
| TAAAATTACGTACATTTAAA+GGG | 0.314879 | 3_2:-81462343 | None:intergenic |
| TAGGTGCGGCATTTGTGATT+AGG | 0.366296 | 3_2:-81462450 | None:intergenic |
| GGTGGTATCATTTGCATTAG+TGG | 0.367958 | 3_2:+81455879 | Msa0429880:five_prime_UTR |
| CTTCAGATTTAGGGAGTTGT+TGG | 0.393913 | 3_2:+81457608 | Msa0429880:five_prime_UTR |
| GGAGGATTGGGCTACCTATA+TGG | 0.398088 | 3_2:+81462500 | Msa0429880:CDS |
| AACCGTGGTCAAGGAGGATT+GGG | 0.447201 | 3_2:+81462488 | Msa0429880:CDS |
| ATCAATAACACTGATTTGAC+GGG | 0.447409 | 3_2:-81462258 | None:intergenic |
| AATCAATAACACTGATTTGA+CGG | 0.458324 | 3_2:-81462259 | None:intergenic |
| TAACCGTGGTCAAGGAGGAT+TGG | 0.474151 | 3_2:+81462487 | Msa0429880:CDS |
| GAAAACATCATCCACCATAT+AGG | 0.480204 | 3_2:-81462514 | None:intergenic |
| AACAACTAGAAGCATGTGTC+TGG | 0.483341 | 3_2:+81455822 | None:intergenic |
| TGATAAGTTAACCGTGGTCA+AGG | 0.537513 | 3_2:+81462479 | Msa0429880:CDS |
| GCAGAAGAGCTGAAAGGAAA+GGG | 0.544619 | 3_2:+81455858 | Msa0429880:five_prime_UTR |
| CGCAGAAGAGCTGAAAGGAA+AGG | 0.566527 | 3_2:+81455857 | Msa0429880:five_prime_UTR |
| GGTTAACTTATCATTAGAGT+AGG | 0.612826 | 3_2:-81462469 | None:intergenic |
| AAAGCGACGATATATGAAAG+TGG | 0.613767 | 3_2:+81462295 | Msa0429880:exon |
| GTTGGTTTGGAAGCTAACTA+CGG | 0.616053 | 3_2:+81461733 | Msa0429880:intron |
| ATATATGAAAGTGGTCAACA+TGG | 0.617015 | 3_2:+81462304 | Msa0429880:exon |
| ACTTATCATTAGAGTAGGTG+CGG | 0.617183 | 3_2:-81462464 | None:intergenic |
| GGATTGGGCTACCTATATGG+TGG | 0.653360 | 3_2:+81462503 | Msa0429880:CDS |
| TCAATAACACTGATTTGACG+GGG | 0.658392 | 3_2:-81462257 | None:intergenic |
| GAAAGCGCAGAAGAGCTGAA+AGG | 0.659844 | 3_2:+81455852 | Msa0429880:five_prime_UTR |
| AGCCCAATCCTCCTTGACCA+CGG | 0.661100 | 3_2:-81462490 | None:intergenic |
| CTCTAATGATAAGTTAACCG+TGG | 0.664501 | 3_2:+81462473 | Msa0429880:CDS |
| TAAGTTAACCGTGGTCAAGG+AGG | 0.711326 | 3_2:+81462482 | Msa0429880:CDS |
| CAATAACACTGATTTGACGG+GGG | 0.712803 | 3_2:-81462256 | None:intergenic |
| GAAGAGCTGAAAGGAAAGGG+TGG | 0.715537 | 3_2:+81455861 | Msa0429880:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATGATATAATTTCT+TGG | + | chr3_2:81456511-81456530 | Msa0429880:intron | 10.0% |
| !! | TTACAACTTAAATTAATTAA+GGG | - | chr3_2:81457525-81457544 | None:intergenic | 10.0% |
| !! | ATTACAACTTAAATTAATTA+AGG | - | chr3_2:81457526-81457545 | None:intergenic | 10.0% |
| !! | ATATTTCTCAATTAAAAATA+TGG | - | chr3_2:81457681-81457700 | None:intergenic | 10.0% |
| !! | AAAATATCACATAAAATATT+TGG | - | chr3_2:81459360-81459379 | None:intergenic | 10.0% |
| !! | ATATTTCTCAATTAAAAATA+TGG | - | chr3_2:81457681-81457700 | None:intergenic | 10.0% |
| !! | TAAATAAATAAAATTGAGTT+AGG | - | chr3_2:81462407-81462426 | None:intergenic | 10.0% |
| !!! | TTATCATTTTTATGATTCTT+TGG | + | chr3_2:81457279-81457298 | Msa0429880:intron | 15.0% |
| !!! | TACGTCTAATATTTATTTTA+TGG | + | chr3_2:81457401-81457420 | Msa0429880:intron | 15.0% |
| !! | ATTAATTATAATGTTTGACT+TGG | + | chr3_2:81457736-81457755 | Msa0429880:intron | 15.0% |
| !! | ATTAAAGAAAATAAACAAGA+GGG | - | chr3_2:81458331-81458350 | None:intergenic | 15.0% |
| !! | TATTAAAGAAAATAAACAAG+AGG | - | chr3_2:81458332-81458351 | None:intergenic | 15.0% |
| !! | TTAAGATTGTTGTAAAAATT+AGG | - | chr3_2:81458410-81458429 | None:intergenic | 15.0% |
| !!! | TAATTTTTACAACAATCTTA+AGG | + | chr3_2:81458409-81458428 | Msa0429880:intron | 15.0% |
| !!! | ATCTACTTATATTTCAATTT+TGG | + | chr3_2:81458698-81458717 | Msa0429880:intron | 15.0% |
| !!! | TTTTATTTTATTTTCCTTCT+CGG | + | chr3_2:81459306-81459325 | Msa0429880:intron | 15.0% |
| !!! | TGATATTTTATCTAATTGAT+TGG | + | chr3_2:81459371-81459390 | Msa0429880:intron | 15.0% |
| !! | CAAGTTTATAAAAATAAACT+CGG | - | chr3_2:81460228-81460247 | None:intergenic | 15.0% |
| !! | GCTAAATAATATAAAATTGA+TGG | + | chr3_2:81460511-81460530 | Msa0429880:intron | 15.0% |
| !! | TTTCAAAAGTTAAACTAAAA+AGG | - | chr3_2:81460909-81460928 | None:intergenic | 15.0% |
| !! | ATTAATTATAATGTTTGACT+TGG | + | chr3_2:81457736-81457755 | Msa0429880:intron | 15.0% |
| !! | ATTAAAGAAAATAAACAAGA+GGG | - | chr3_2:81458331-81458350 | None:intergenic | 15.0% |
| !! | TATTAAAGAAAATAAACAAG+AGG | - | chr3_2:81458332-81458351 | None:intergenic | 15.0% |
| !! | TAAAATTACGTACATTTAAA+GGG | - | chr3_2:81462346-81462365 | None:intergenic | 15.0% |
| !! | TTAAAATTACGTACATTTAA+AGG | - | chr3_2:81462347-81462366 | None:intergenic | 15.0% |
| !!! | TAATTGTTTAATTTGCACTT+TGG | + | chr3_2:81456092-81456111 | Msa0429880:intron | 20.0% |
| !! | ATATATCTTAAGCACAAAAA+TGG | - | chr3_2:81456492-81456511 | None:intergenic | 20.0% |
| !!! | GACGTAAATTTAAAATGAAA+TGG | + | chr3_2:81456631-81456650 | Msa0429880:intron | 20.0% |
| !! | TGTGAAAGATTCATATAATT+TGG | - | chr3_2:81456879-81456898 | None:intergenic | 20.0% |
| !!! | TTGGAATACTTTGTTTAATA+CGG | + | chr3_2:81456955-81456974 | Msa0429880:intron | 20.0% |
| !!! | AGTGTCATTAAACATAAATA+AGG | - | chr3_2:81457357-81457376 | None:intergenic | 20.0% |
| !!! | AAATTGATCTTCCTTTATTT+TGG | - | chr3_2:81457437-81457456 | None:intergenic | 20.0% |
| !!! | AAATAAAGGAAGATCAATTT+TGG | + | chr3_2:81457437-81457456 | Msa0429880:intron | 20.0% |
| !!! | TTTTGTAATTTAGTCACATT+TGG | + | chr3_2:81457484-81457503 | Msa0429880:intron | 20.0% |
| !! | AACTTAAATTAATTAAGGGA+TGG | - | chr3_2:81457521-81457540 | None:intergenic | 20.0% |
| !! | AAAACTTGGAATTAAAACAT+GGG | - | chr3_2:81457769-81457788 | None:intergenic | 20.0% |
| !! | AAAAACTTGGAATTAAAACA+TGG | - | chr3_2:81457770-81457789 | None:intergenic | 20.0% |
| !!! | TATAGCTTTCTCTAAAATAA+CGG | + | chr3_2:81457829-81457848 | Msa0429880:intron | 20.0% |
| !! | ATTAAATCATTGTAATAGCA+TGG | - | chr3_2:81457895-81457914 | None:intergenic | 20.0% |
| !! | TATTATATTTGTGAAAGGAT+AGG | - | chr3_2:81457922-81457941 | None:intergenic | 20.0% |
| !! | TGGTATATTATATTTGTGAA+AGG | - | chr3_2:81457927-81457946 | None:intergenic | 20.0% |
| !! | TTATATAACAGTTTAGTGTT+TGG | + | chr3_2:81458203-81458222 | Msa0429880:intron | 20.0% |
| !!! | TATATTTCAATTTTGGTGAA+AGG | + | chr3_2:81458705-81458724 | Msa0429880:intron | 20.0% |
| !!! | ATCCTTTGATTTAAAAAGAA+GGG | + | chr3_2:81458860-81458879 | Msa0429880:intron | 20.0% |
| !! | TAAATTACAATCATGTCTTT+GGG | + | chr3_2:81458973-81458992 | Msa0429880:intron | 20.0% |
| !!! | AAACTCAAGTTTAAAATTAC+TGG | - | chr3_2:81459157-81459176 | None:intergenic | 20.0% |
| !! | TTTAAACTTGAGTTTCTAAA+AGG | + | chr3_2:81459162-81459181 | Msa0429880:intron | 20.0% |
| !!! | AATTGAGATATATTTTTGTG+TGG | + | chr3_2:81459520-81459539 | Msa0429880:intron | 20.0% |
| !! | TAAGAACCACAATATTATAA+AGG | - | chr3_2:81459655-81459674 | None:intergenic | 20.0% |
| !!! | ATTGCGTTATTTTAATACAA+TGG | - | chr3_2:81459914-81459933 | None:intergenic | 20.0% |
| !! | ACTTATAGATTTATTCTCAT+CGG | - | chr3_2:81460137-81460156 | None:intergenic | 20.0% |
| !! | TATAAACTTGATGAAATATG+AGG | + | chr3_2:81460238-81460257 | Msa0429880:intron | 20.0% |
| !!! | AGTTTAACTTTTGAAATATG+TGG | + | chr3_2:81460913-81460932 | Msa0429880:intron | 20.0% |
| !!! | GTTTAACTTTTGAAATATGT+GGG | + | chr3_2:81460914-81460933 | Msa0429880:intron | 20.0% |
| !!! | TTTAACTTTTGAAATATGTG+GGG | + | chr3_2:81460915-81460934 | Msa0429880:intron | 20.0% |
| !! | AAAACTTGGAATTAAAACAT+GGG | - | chr3_2:81457769-81457788 | None:intergenic | 20.0% |
| !! | AAAAACTTGGAATTAAAACA+TGG | - | chr3_2:81457770-81457789 | None:intergenic | 20.0% |
| !!! | TATAGCTTTCTCTAAAATAA+CGG | + | chr3_2:81457829-81457848 | Msa0429880:intron | 20.0% |
| !! | ATTAAATCATTGTAATAGCA+TGG | - | chr3_2:81457895-81457914 | None:intergenic | 20.0% |
| !! | TATTATATTTGTGAAAGGAT+AGG | - | chr3_2:81457922-81457941 | None:intergenic | 20.0% |
| !! | TGGTATATTATATTTGTGAA+AGG | - | chr3_2:81457927-81457946 | None:intergenic | 20.0% |
| !! | TTATATAACAGTTTAGTGTT+TGG | + | chr3_2:81458203-81458222 | Msa0429880:intron | 20.0% |
| !!! | TTTTCAGTACAAATTAACAA+AGG | - | chr3_2:81461822-81461841 | None:intergenic | 20.0% |
| ! | ATTCATGAGTTCTTCAAAAT+TGG | + | chr3_2:81455957-81455976 | Msa0429880:intron | 25.0% |
| ! | TTCATGAGTTCTTCAAAATT+GGG | + | chr3_2:81455958-81455977 | Msa0429880:intron | 25.0% |
| ! | CTTTCTAGACATAAAACTAT+AGG | + | chr3_2:81455985-81456004 | Msa0429880:intron | 25.0% |
| !! | ATACATTGCAAAGAATCTTT+TGG | - | chr3_2:81456071-81456090 | None:intergenic | 25.0% |
| !!! | GTTTTTTACGGTTTTCTATT+AGG | - | chr3_2:81456190-81456209 | None:intergenic | 25.0% |
| ! | TCCATTATTTGTAAAGATCA+CGG | - | chr3_2:81456362-81456381 | None:intergenic | 25.0% |
| ! | TAAGCACAAAAATGGTAAAA+TGG | - | chr3_2:81456484-81456503 | None:intergenic | 25.0% |
| !! | TAGAATGATTTTGAACTTTG+GGG | - | chr3_2:81456808-81456827 | None:intergenic | 25.0% |
| !! | GTAGAATGATTTTGAACTTT+GGG | - | chr3_2:81456809-81456828 | None:intergenic | 25.0% |
| !! | AGTAGAATGATTTTGAACTT+TGG | - | chr3_2:81456810-81456829 | None:intergenic | 25.0% |
| ! | AAGTATTCCAATATTCAGAA+GGG | - | chr3_2:81456946-81456965 | None:intergenic | 25.0% |
| !! | AAAGTATTCCAATATTCAGA+AGG | - | chr3_2:81456947-81456966 | None:intergenic | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+CGG | - | chr3_2:81457058-81457077 | None:intergenic | 25.0% |
| ! | AGTTGAGAGTAAAAATGAAT+AGG | - | chr3_2:81457191-81457210 | None:intergenic | 25.0% |
| !!! | GTTTTAGTTGACCAAAATAA+AGG | + | chr3_2:81457423-81457442 | Msa0429880:intron | 25.0% |
| ! | GGAAAAATGTTACAAAAACT+TGG | - | chr3_2:81457783-81457802 | None:intergenic | 25.0% |
| ! | TCCTATTTATATGGAATTAG+TGG | + | chr3_2:81457869-81457888 | Msa0429880:intron | 25.0% |
| !! | TATACCATTTTCTTTAATCC+TGG | + | chr3_2:81457940-81457959 | Msa0429880:intron | 25.0% |
| ! | AAAACCAGGATTAAAGAAAA+TGG | - | chr3_2:81457947-81457966 | None:intergenic | 25.0% |
| ! | CTAAACTGTTATATAACATG+AGG | - | chr3_2:81458199-81458218 | None:intergenic | 25.0% |
| ! | ACTTATCTTTCTTGAAATTG+CGG | - | chr3_2:81458297-81458316 | None:intergenic | 25.0% |
| ! | TTGAATTGCTTATATTGTTC+TGG | + | chr3_2:81458594-81458613 | Msa0429880:intron | 25.0% |
| ! | TGAAAGGTTAAGAAGTTTAA+TGG | + | chr3_2:81458721-81458740 | Msa0429880:intron | 25.0% |
| !! | TATTGACATGCTGAAAATTT+TGG | + | chr3_2:81458829-81458848 | Msa0429880:intron | 25.0% |
| !! | GATCCTTTGATTTAAAAAGA+AGG | + | chr3_2:81458859-81458878 | Msa0429880:intron | 25.0% |
| ! | AGTTGCAGAAAATTATATTG+TGG | + | chr3_2:81458889-81458908 | Msa0429880:intron | 25.0% |
| ! | AAATTAACGACAAGTACAAA+TGG | - | chr3_2:81458940-81458959 | None:intergenic | 25.0% |
| ! | GTAAATTACAATCATGTCTT+TGG | + | chr3_2:81458972-81458991 | Msa0429880:intron | 25.0% |
| !!! | TAGTATTGTTTTGATTTGAG+AGG | + | chr3_2:81459077-81459096 | Msa0429880:intron | 25.0% |
| ! | ATCCAACAAATATATGTATG+GGG | - | chr3_2:81459277-81459296 | None:intergenic | 25.0% |
| ! | CATCCAACAAATATATGTAT+GGG | - | chr3_2:81459278-81459297 | None:intergenic | 25.0% |
| ! | AATATCACACCAATATTCTA+CGG | - | chr3_2:81459882-81459901 | None:intergenic | 25.0% |
| !! | ATGTTTGATTTATCTATGTG+TGG | + | chr3_2:81459935-81459954 | Msa0429880:intron | 25.0% |
| !! | TGTTTGATTTATCTATGTGT+GGG | + | chr3_2:81459936-81459955 | Msa0429880:intron | 25.0% |
| ! | AGTTTATATTTACCCAATGT+GGG | + | chr3_2:81460031-81460050 | Msa0429880:intron | 25.0% |
| ! | GTCAATATTTGTGAATTAAG+CGG | + | chr3_2:81460284-81460303 | Msa0429880:intron | 25.0% |
| ! | TTTCCTATAGTGTATGATAA+TGG | + | chr3_2:81460479-81460498 | Msa0429880:intron | 25.0% |
| !!! | TTAACTTTTGAAATATGTGG+GGG | + | chr3_2:81460916-81460935 | Msa0429880:intron | 25.0% |
| ! | TCCTATTTATATGGAATTAG+TGG | + | chr3_2:81457869-81457888 | Msa0429880:intron | 25.0% |
| !! | TATACCATTTTCTTTAATCC+TGG | + | chr3_2:81457940-81457959 | Msa0429880:intron | 25.0% |
| ! | AAAACCAGGATTAAAGAAAA+TGG | - | chr3_2:81457947-81457966 | None:intergenic | 25.0% |
| !!! | TTTAATCCTGGTTTTTTGAT+TGG | + | chr3_2:81461262-81461281 | Msa0429880:intron | 25.0% |
| ! | CTAAACTGTTATATAACATG+AGG | - | chr3_2:81458199-81458218 | None:intergenic | 25.0% |
| ! | ACTTATCTTTCTTGAAATTG+CGG | - | chr3_2:81458297-81458316 | None:intergenic | 25.0% |
| !! | TTCCTAATTTTTACAACAGT+TGG | + | chr3_2:81461715-81461734 | Msa0429880:intron | 25.0% |
| ! | AACCAACTGTTGTAAAAATT+AGG | - | chr3_2:81461720-81461739 | None:intergenic | 25.0% |
| !! | AATTTTTACAACAGTTGGTT+TGG | + | chr3_2:81461720-81461739 | Msa0429880:intron | 25.0% |
| ! | AATAATACCTAGTGATCATA+CGG | - | chr3_2:81461943-81461962 | None:intergenic | 25.0% |
| ! | ATATAAGAGACATAACATCT+TGG | + | chr3_2:81462036-81462055 | Msa0429880:intron | 25.0% |
| ! | TACTATGTATATGCCATTAT+AGG | + | chr3_2:81462065-81462084 | Msa0429880:intron | 25.0% |
| ! | TATGCAATTATGTAGACTAA+AGG | + | chr3_2:81462199-81462218 | Msa0429880:intron | 25.0% |
| !!! | AATCAATAACACTGATTTGA+CGG | - | chr3_2:81462262-81462281 | None:intergenic | 25.0% |
| TATCATTTGCATTAGTGGTA+AGG | + | chr3_2:81455884-81455903 | Msa0429880:intron | 30.0% | |
| TCATGAGTTCTTCAAAATTG+GGG | + | chr3_2:81455959-81455978 | Msa0429880:intron | 30.0% | |
| !! | GTTGATTTGTTTCTAACATG+AGG | + | chr3_2:81456038-81456057 | Msa0429880:intron | 30.0% |
| ! | TTTTATCTCTTCCTAGTAGT+AGG | + | chr3_2:81456139-81456158 | Msa0429880:intron | 30.0% |
| ! | TTTACGGTTTTCTATTAGGT+TGG | - | chr3_2:81456186-81456205 | None:intergenic | 30.0% |
| AAACCGTAAAAAACTGTGTT+TGG | + | chr3_2:81456196-81456215 | Msa0429880:intron | 30.0% | |
| !!! | GAACCAAACACAGTTTTTTA+CGG | - | chr3_2:81456202-81456221 | None:intergenic | 30.0% |
| TGCATGGTTGAGTTAAAAAA+TGG | - | chr3_2:81456238-81456257 | None:intergenic | 30.0% | |
| CCATTATTTGTAAAGATCAC+GGG | - | chr3_2:81456361-81456380 | None:intergenic | 30.0% | |
| !! | ATAATTTCTTGGTTTGCATG+TGG | + | chr3_2:81456522-81456541 | Msa0429880:intron | 30.0% |
| ! | AGAATGATTTTGAACTTTGG+GGG | - | chr3_2:81456807-81456826 | None:intergenic | 30.0% |
| AGTATTCCAATATTCAGAAG+GGG | - | chr3_2:81456945-81456964 | None:intergenic | 30.0% | |
| ! | GTGTCATTAAGAGTAAAATG+TGG | - | chr3_2:81457327-81457346 | None:intergenic | 30.0% |
| TGTAAAGACGATGTACATAA+TGG | + | chr3_2:81457376-81457395 | Msa0429880:intron | 30.0% | |
| ! | CAATTTTGTTGAAAAGAACG+AGG | + | chr3_2:81457580-81457599 | Msa0429880:intron | 30.0% |
| GAGGAAATTCTTCAGATTTA+GGG | + | chr3_2:81457599-81457618 | Msa0429880:five_prime_UTR | 30.0% | |
| ATATTATTGCCACATTCAAG+AGG | - | chr3_2:81457812-81457831 | None:intergenic | 30.0% | |
| GCCACTAATTCCATATAAAT+AGG | - | chr3_2:81457873-81457892 | None:intergenic | 30.0% | |
| !!! | TTTAATCCTGGTTTTTTGAC+TGG | + | chr3_2:81457952-81457971 | Msa0429880:intron | 30.0% |
| ! | AGCTTGAATTTGATAATCAC+AGG | - | chr3_2:81458069-81458088 | None:intergenic | 30.0% |
| ! | TTTGTATCAGATTTGGAACT+TGG | + | chr3_2:81458552-81458571 | Msa0429880:intron | 30.0% |
| AAACCAGTATTCTGGTAATA+AGG | + | chr3_2:81458652-81458671 | Msa0429880:intron | 30.0% | |
| !! | GTCAATAATTTGCTATTGCT+AGG | - | chr3_2:81458816-81458835 | None:intergenic | 30.0% |
| ! | CACCCTTCTTTTTAAATCAA+AGG | - | chr3_2:81458865-81458884 | None:intergenic | 30.0% |
| GCATCCAACAAATATATGTA+TGG | - | chr3_2:81459279-81459298 | None:intergenic | 30.0% | |
| ATACCATCATATATCAATCG+AGG | - | chr3_2:81459566-81459585 | None:intergenic | 30.0% | |
| ! | TGCACAAGGTAATATTGATT+TGG | - | chr3_2:81459629-81459648 | None:intergenic | 30.0% |
| TATTATAAAGGCAATGCACA+AGG | - | chr3_2:81459643-81459662 | None:intergenic | 30.0% | |
| GCATTGCCTTTATAATATTG+TGG | + | chr3_2:81459646-81459665 | Msa0429880:intron | 30.0% | |
| AGAATATTGGTGTGATATTG+TGG | + | chr3_2:81459883-81459902 | Msa0429880:intron | 30.0% | |
| TGGGTAAATATAAACTCATG+TGG | - | chr3_2:81460027-81460046 | None:intergenic | 30.0% | |
| GAGTTTATATTTACCCAATG+TGG | + | chr3_2:81460030-81460049 | Msa0429880:intron | 30.0% | |
| GTTTATATTTACCCAATGTG+GGG | + | chr3_2:81460032-81460051 | Msa0429880:intron | 30.0% | |
| TTTATATTTACCCAATGTGG+GGG | + | chr3_2:81460033-81460052 | Msa0429880:intron | 30.0% | |
| CATCCATTATCATACACTAT+AGG | - | chr3_2:81460485-81460504 | None:intergenic | 30.0% | |
| ACATCGTAGATATAATGCAT+CGG | - | chr3_2:81460864-81460883 | None:intergenic | 30.0% | |
| ! | AAGGTTAAAAGAGTTTTCCT+GGG | - | chr3_2:81460890-81460909 | None:intergenic | 30.0% |
| ! | AAAGGTTAAAAGAGTTTTCC+TGG | - | chr3_2:81460891-81460910 | None:intergenic | 30.0% |
| GGAAAAAGGTTACAAAAACT+TGG | - | chr3_2:81461093-81461112 | None:intergenic | 30.0% | |
| ! | TCAAGAGGTATAAAGGAAAA+AGG | - | chr3_2:81457797-81457816 | None:intergenic | 30.0% |
| ATATTATTGCCACATTCAAG+AGG | - | chr3_2:81457812-81457831 | None:intergenic | 30.0% | |
| GCCACTAATTCCATATAAAT+AGG | - | chr3_2:81457873-81457892 | None:intergenic | 30.0% | |
| GAATTTCCAATCAAAAAACC+AGG | - | chr3_2:81461271-81461290 | None:intergenic | 30.0% | |
| ! | AGCTTGAATTTGATAATCAC+AGG | - | chr3_2:81458069-81458088 | None:intergenic | 30.0% |
| GTGCAAATGACATAATATAG+TGG | - | chr3_2:81461795-81461814 | None:intergenic | 30.0% | |
| TTTATATGTCCTATCGTCTA+TGG | + | chr3_2:81461871-81461890 | Msa0429880:intron | 30.0% | |
| TTATATGTCCTATCGTCTAT+GGG | + | chr3_2:81461872-81461891 | Msa0429880:intron | 30.0% | |
| AGCTGAATCCAATAGTAATA+TGG | + | chr3_2:81461988-81462007 | Msa0429880:intron | 30.0% | |
| ! | TTCGTATATAGAACCCATTT+TGG | + | chr3_2:81462115-81462134 | Msa0429880:intron | 30.0% |
| TTCGTTCTAACAACCAAAAT+GGG | - | chr3_2:81462131-81462150 | None:intergenic | 30.0% | |
| ATTCGTTCTAACAACCAAAA+TGG | - | chr3_2:81462132-81462151 | None:intergenic | 30.0% | |
| !! | ATCAATAACACTGATTTGAC+GGG | - | chr3_2:81462261-81462280 | None:intergenic | 30.0% |
| ATATATGAAAGTGGTCAACA+TGG | + | chr3_2:81462304-81462323 | Msa0429880:exon | 30.0% | |
| GGTTAACTTATCATTAGAGT+AGG | - | chr3_2:81462472-81462491 | None:intergenic | 30.0% | |
| !!! | GGTTTTCTATTAGGTTGGTT+CGG | - | chr3_2:81456181-81456200 | None:intergenic | 35.0% |
| !! | TGTTTGGTTCTGATGTGTTA+TGG | + | chr3_2:81456212-81456231 | Msa0429880:intron | 35.0% |
| CCCGTGATCTTTACAAATAA+TGG | + | chr3_2:81456358-81456377 | Msa0429880:intron | 35.0% | |
| ! | TAATGGAACTTTTCTTCCCT+AGG | + | chr3_2:81456375-81456394 | Msa0429880:intron | 35.0% |
| ! | CTTTTCTTCCCTAGGAATAA+AGG | + | chr3_2:81456383-81456402 | Msa0429880:intron | 35.0% |
| GAATAAAGGACTCGTACAAT+TGG | + | chr3_2:81456397-81456416 | Msa0429880:intron | 35.0% | |
| ATGATGCTGATAACATTGAC+TGG | + | chr3_2:81456432-81456451 | Msa0429880:intron | 35.0% | |
| ! | GCTTTTCCTATTCCCTTATT+GGG | - | chr3_2:81456562-81456581 | None:intergenic | 35.0% |
| ! | AGCTTTTCCTATTCCCTTAT+TGG | - | chr3_2:81456563-81456582 | None:intergenic | 35.0% |
| ! | ATTATTTTCTTCCGTGTGCT+AGG | + | chr3_2:81456609-81456628 | Msa0429880:intron | 35.0% |
| TAAATTTACGTCCTAGCACA+CGG | - | chr3_2:81456623-81456642 | None:intergenic | 35.0% | |
| ! | GTAATTATATGTGTCGGTGT+CGG | - | chr3_2:81457052-81457071 | None:intergenic | 35.0% |
| TTGTTAAACCCTATGAAGCA+CGG | - | chr3_2:81457130-81457149 | None:intergenic | 35.0% | |
| TCAACTGCTTTGATATTAGC+AGG | + | chr3_2:81457205-81457224 | Msa0429880:intron | 35.0% | |
| CAACTGCTTTGATATTAGCA+GGG | + | chr3_2:81457206-81457225 | Msa0429880:intron | 35.0% | |
| AACTGCTTTGATATTAGCAG+GGG | + | chr3_2:81457207-81457226 | Msa0429880:intron | 35.0% | |
| TTCTTTGGACCTCAATTACT+TGG | + | chr3_2:81457294-81457313 | Msa0429880:intron | 35.0% | |
| CGAGGAAATTCTTCAGATTT+AGG | + | chr3_2:81457598-81457617 | Msa0429880:five_prime_UTR | 35.0% | |
| TCCTTTATACCTCTTGAATG+TGG | + | chr3_2:81457800-81457819 | Msa0429880:intron | 35.0% | |
| !! | CTAGCTTGCTCCTATTTATA+TGG | + | chr3_2:81457860-81457879 | Msa0429880:intron | 35.0% |
| GAATTTCCAGTCAAAAAACC+AGG | - | chr3_2:81457961-81457980 | None:intergenic | 35.0% | |
| CTTGATGTGAATCACATCAA+AGG | - | chr3_2:81458101-81458120 | None:intergenic | 35.0% | |
| CTTTGATGTGATTCACATCA+AGG | + | chr3_2:81458099-81458118 | Msa0429880:intron | 35.0% | |
| TTGGCAGATTATCACTTTCA+TGG | + | chr3_2:81458222-81458241 | Msa0429880:intron | 35.0% | |
| CGCATTCTTTGTATCAGATT+TGG | + | chr3_2:81458545-81458564 | Msa0429880:intron | 35.0% | |
| ! | GATTCTGAAAACCAGTATTC+TGG | + | chr3_2:81458644-81458663 | Msa0429880:intron | 35.0% |
| ! | ATGCCTTATTACCAGAATAC+TGG | - | chr3_2:81458658-81458677 | None:intergenic | 35.0% |
| !! | CATGCTGAAAATTTTGGTAG+TGG | + | chr3_2:81458835-81458854 | Msa0429880:intron | 35.0% |
| ATATTGTGGATATGTCACAC+AGG | + | chr3_2:81458903-81458922 | Msa0429880:intron | 35.0% | |
| GATCAGTCTCAAACAAACAA+GGG | - | chr3_2:81459133-81459152 | None:intergenic | 35.0% | |
| TGATCAGTCTCAAACAAACA+AGG | - | chr3_2:81459134-81459153 | None:intergenic | 35.0% | |
| ATGTCATCAATCAAACAACG+AGG | - | chr3_2:81459210-81459229 | None:intergenic | 35.0% | |
| TGCCCCATACATATATTTGT+TGG | + | chr3_2:81459272-81459291 | Msa0429880:intron | 35.0% | |
| TGAGATACACCGTAGAATAT+TGG | + | chr3_2:81459870-81459889 | Msa0429880:intron | 35.0% | |
| !! | TGGGTTTATTTTTCCCAATG+TGG | + | chr3_2:81459955-81459974 | Msa0429880:intron | 35.0% |
| !! | GGGTTTATTTTTCCCAATGT+GGG | + | chr3_2:81459956-81459975 | Msa0429880:intron | 35.0% |
| !! | GGTTTATTTTTCCCAATGTG+GGG | + | chr3_2:81459957-81459976 | Msa0429880:intron | 35.0% |
| !! | GTTTATTTTTCCCAATGTGG+GGG | + | chr3_2:81459958-81459977 | Msa0429880:intron | 35.0% |
| !! | TTTATTTTTCCCAATGTGGG+GGG | + | chr3_2:81459959-81459978 | Msa0429880:intron | 35.0% |
| AGACCTGACGAAGTATATAA+TGG | + | chr3_2:81460081-81460100 | Msa0429880:intron | 35.0% | |
| CTTCCATTATATACTTCGTC+AGG | - | chr3_2:81460087-81460106 | None:intergenic | 35.0% | |
| ! | CTGACGAAGTATATAATGGA+AGG | + | chr3_2:81460085-81460104 | Msa0429880:intron | 35.0% |
| TTCCCTAAATTTCTTCCCAA+GGG | - | chr3_2:81460327-81460346 | None:intergenic | 35.0% | |
| TTTCCCTAAATTTCTTCCCA+AGG | - | chr3_2:81460328-81460347 | None:intergenic | 35.0% | |
| ACTCGAATACGACAAGTAAT+GGG | + | chr3_2:81460360-81460379 | Msa0429880:intron | 35.0% | |
| ATGATTACCATAAGCCCTTA+TGG | + | chr3_2:81460554-81460573 | Msa0429880:intron | 35.0% | |
| TGATTACCATAAGCCCTTAT+GGG | + | chr3_2:81460555-81460574 | Msa0429880:intron | 35.0% | |
| TTGCATACAACAAGTGTCTT+GGG | + | chr3_2:81460759-81460778 | Msa0429880:intron | 35.0% | |
| ! | TGAATTGGTTTAGCAAGCTA+TGG | - | chr3_2:81460787-81460806 | None:intergenic | 35.0% |
| AGACTTAACACACAGTGAAT+TGG | - | chr3_2:81460802-81460821 | None:intergenic | 35.0% | |
| ! | GTGTTAAGTCTCATTAGTCT+AGG | + | chr3_2:81460811-81460830 | Msa0429880:intron | 35.0% |
| ! | TAAGTCTCATTAGTCTAGGA+CGG | + | chr3_2:81460815-81460834 | Msa0429880:intron | 35.0% |
| GTAGATATAATGCATCGGAA+CGG | - | chr3_2:81460859-81460878 | None:intergenic | 35.0% | |
| TATATCTACGATGTTTACCC+AGG | + | chr3_2:81460870-81460889 | Msa0429880:intron | 35.0% | |
| TCCTTTATACCTCTTGAATG+TGG | + | chr3_2:81457800-81457819 | Msa0429880:intron | 35.0% | |
| !! | CTAGCTTGCTCCTATTTATA+TGG | + | chr3_2:81457860-81457879 | Msa0429880:intron | 35.0% |
| CTTGATGTGAATCACATCAA+AGG | - | chr3_2:81458101-81458120 | None:intergenic | 35.0% | |
| CTTTGATGTGATTCACATCA+AGG | + | chr3_2:81458099-81458118 | Msa0429880:intron | 35.0% | |
| TTGGCAGATTATCACTTTCA+TGG | + | chr3_2:81458222-81458241 | Msa0429880:intron | 35.0% | |
| ATTAACTCCGTATGATCACT+AGG | + | chr3_2:81461933-81461952 | Msa0429880:intron | 35.0% | |
| TTAGGGTCTAAGTCCTATAA+TGG | - | chr3_2:81462081-81462100 | None:intergenic | 35.0% | |
| TAGGACTTAGACCCTAAAAT+TGG | + | chr3_2:81462084-81462103 | Msa0429880:intron | 35.0% | |
| AGGACTTAGACCCTAAAATT+GGG | + | chr3_2:81462085-81462104 | Msa0429880:intron | 35.0% | |
| ! | GAATGATCTGCCCAATTTTA+GGG | - | chr3_2:81462098-81462117 | None:intergenic | 35.0% |
| !! | TCAATAACACTGATTTGACG+GGG | - | chr3_2:81462260-81462279 | None:intergenic | 35.0% |
| AAAGCGACGATATATGAAAG+TGG | + | chr3_2:81462295-81462314 | Msa0429880:exon | 35.0% | |
| ACTTATCATTAGAGTAGGTG+CGG | - | chr3_2:81462467-81462486 | None:intergenic | 35.0% | |
| CTCTAATGATAAGTTAACCG+TGG | + | chr3_2:81462473-81462492 | Msa0429880:CDS | 35.0% | |
| GAAAACATCATCCACCATAT+AGG | - | chr3_2:81462517-81462536 | None:intergenic | 35.0% | |
| GGTGGTATCATTTGCATTAG+TGG | + | chr3_2:81455879-81455898 | Msa0429880:five_prime_UTR | 40.0% | |
| TCTTCCTAGTAGTAGGCTAT+CGG | + | chr3_2:81456146-81456165 | Msa0429880:intron | 40.0% | |
| CTCAACCATGCAGTACATTT+CGG | + | chr3_2:81456246-81456265 | Msa0429880:intron | 40.0% | |
| ACAAACCGAAATGTACTGCA+TGG | - | chr3_2:81456254-81456273 | None:intergenic | 40.0% | |
| ! | GCAGTACATTTCGGTTTGTA+AGG | + | chr3_2:81456255-81456274 | Msa0429880:intron | 40.0% |
| ! | CATTTCGGTTTGTAAGGTGA+AGG | + | chr3_2:81456261-81456280 | Msa0429880:intron | 40.0% |
| ATTTGTAAAGATCACGGGCT+CGG | - | chr3_2:81456356-81456375 | None:intergenic | 40.0% | |
| GTACGAGTCCTTTATTCCTA+GGG | - | chr3_2:81456394-81456413 | None:intergenic | 40.0% | |
| TGTACGAGTCCTTTATTCCT+AGG | - | chr3_2:81456395-81456414 | None:intergenic | 40.0% | |
| AGTGACATTGATGCCCAATA+AGG | + | chr3_2:81456546-81456565 | Msa0429880:intron | 40.0% | |
| GTGACATTGATGCCCAATAA+GGG | + | chr3_2:81456547-81456566 | Msa0429880:intron | 40.0% | |
| TTGATGCCCAATAAGGGAAT+AGG | + | chr3_2:81456553-81456572 | Msa0429880:intron | 40.0% | |
| CAATCACCCCTTCTGAATAT+TGG | + | chr3_2:81456936-81456955 | Msa0429880:intron | 40.0% | |
| TAGTTGTATCCGTGCTTCAT+AGG | + | chr3_2:81457118-81457137 | Msa0429880:intron | 40.0% | |
| AGTTGTATCCGTGCTTCATA+GGG | + | chr3_2:81457119-81457138 | Msa0429880:intron | 40.0% | |
| AACTATGACCAACTCTCAAC+TGG | + | chr3_2:81457165-81457184 | Msa0429880:intron | 40.0% | |
| ! | TATTAGCAGGGGTACATTGT+AGG | + | chr3_2:81457218-81457237 | Msa0429880:intron | 40.0% |
| CTTCAGATTTAGGGAGTTGT+TGG | + | chr3_2:81457608-81457627 | Msa0429880:five_prime_UTR | 40.0% | |
| ! | GCCACATTCAAGAGGTATAA+AGG | - | chr3_2:81457804-81457823 | None:intergenic | 40.0% |
| AGGAAGAACATGTTGTATCC+TGG | + | chr3_2:81458119-81458138 | Msa0429880:intron | 40.0% | |
| GGAAGAACATGTTGTATCCT+GGG | + | chr3_2:81458120-81458139 | Msa0429880:intron | 40.0% | |
| ATGAGGCGGATAAATCCTTA+AGG | + | chr3_2:81458156-81458175 | Msa0429880:intron | 40.0% | |
| TGACAAAGTCACTGTCCTTA+AGG | - | chr3_2:81458174-81458193 | None:intergenic | 40.0% | |
| TCTTGAAATTGCGGTGATTG+CGG | - | chr3_2:81458288-81458307 | None:intergenic | 40.0% | |
| GAATGCGACATGAAGTAGTA+AGG | - | chr3_2:81458532-81458551 | None:intergenic | 40.0% | |
| CTACGATGTAGGAGGAAAAA+GGG | + | chr3_2:81458774-81458793 | Msa0429880:intron | 40.0% | |
| GCTAGCACAAATCATTAAGC+AGG | - | chr3_2:81459007-81459026 | None:intergenic | 40.0% | |
| GCTCCTCGATTGATATATGA+TGG | + | chr3_2:81459560-81459579 | Msa0429880:intron | 40.0% | |
| TCCGTGTATATAAAACCCCT+TGG | + | chr3_2:81460308-81460327 | Msa0429880:intron | 40.0% | |
| !! | CCCAAGGGGTTTTATATACA+CGG | - | chr3_2:81460312-81460331 | None:intergenic | 40.0% |
| CCGTGTATATAAAACCCCTT+GGG | + | chr3_2:81460309-81460328 | Msa0429880:intron | 40.0% | |
| AACCCCTTGGGAAGAAATTT+AGG | + | chr3_2:81460321-81460340 | Msa0429880:intron | 40.0% | |
| ACCCCTTGGGAAGAAATTTA+GGG | + | chr3_2:81460322-81460341 | Msa0429880:intron | 40.0% | |
| TCCCTAAATTTCTTCCCAAG+GGG | - | chr3_2:81460326-81460345 | None:intergenic | 40.0% | |
| CATTACTTGTCGTATTCGAG+TGG | - | chr3_2:81460361-81460380 | None:intergenic | 40.0% | |
| CACTCGAATACGACAAGTAA+TGG | + | chr3_2:81460359-81460378 | Msa0429880:intron | 40.0% | |
| GATCTCCAATCACAAAGGTT+GGG | - | chr3_2:81460388-81460407 | None:intergenic | 40.0% | |
| ATCCCATGAAGAAGGTTCAA+TGG | + | chr3_2:81460405-81460424 | Msa0429880:intron | 40.0% | |
| TCCCATGAAGAAGGTTCAAT+GGG | + | chr3_2:81460406-81460425 | Msa0429880:intron | 40.0% | |
| ACCCATTGAACCTTCTTCAT+GGG | - | chr3_2:81460410-81460429 | None:intergenic | 40.0% | |
| TACCCATTGAACCTTCTTCA+TGG | - | chr3_2:81460411-81460430 | None:intergenic | 40.0% | |
| TCACCTATATGAGTGTCAAG+TGG | + | chr3_2:81460610-81460629 | Msa0429880:intron | 40.0% | |
| CACCTATATGAGTGTCAAGT+GGG | + | chr3_2:81460611-81460630 | Msa0429880:intron | 40.0% | |
| ACCTATATGAGTGTCAAGTG+GGG | + | chr3_2:81460612-81460631 | Msa0429880:intron | 40.0% | |
| CCACAATTCTTACTGTTACG+CGG | - | chr3_2:81460714-81460733 | None:intergenic | 40.0% | |
| CGCGTAACAGTAAGAATTGT+GGG | + | chr3_2:81460712-81460731 | Msa0429880:intron | 40.0% | |
| GCGTAACAGTAAGAATTGTG+GGG | + | chr3_2:81460713-81460732 | Msa0429880:intron | 40.0% | |
| CGTAACAGTAAGAATTGTGG+GGG | + | chr3_2:81460714-81460733 | Msa0429880:intron | 40.0% | |
| !! | AGACACTTGTTGTATGCAAG+AGG | - | chr3_2:81460758-81460777 | None:intergenic | 40.0% |
| CTTGCATACAACAAGTGTCT+TGG | + | chr3_2:81460758-81460777 | Msa0429880:intron | 40.0% | |
| ! | AAGTCTCATTAGTCTAGGAC+GGG | + | chr3_2:81460816-81460835 | Msa0429880:intron | 40.0% |
| ! | GCCACATTCAAGAGGTATAA+AGG | - | chr3_2:81457804-81457823 | None:intergenic | 40.0% |
| AGGAAGAACATGTTGTATCC+TGG | + | chr3_2:81458119-81458138 | Msa0429880:intron | 40.0% | |
| GGAAGAACATGTTGTATCCT+GGG | + | chr3_2:81458120-81458139 | Msa0429880:intron | 40.0% | |
| ATGAGGCGGATAAATCCTTA+AGG | + | chr3_2:81458156-81458175 | Msa0429880:intron | 40.0% | |
| TGACAAAGTCACTGTCCTTA+AGG | - | chr3_2:81458174-81458193 | None:intergenic | 40.0% | |
| TCTTGAAATTGCGGTGATTG+CGG | - | chr3_2:81458288-81458307 | None:intergenic | 40.0% | |
| !! | GTTGGTTTGGAAGCTAACTA+CGG | + | chr3_2:81461733-81461752 | Msa0429880:intron | 40.0% |
| TTGTTTGACCCATAGACGAT+AGG | - | chr3_2:81461883-81461902 | None:intergenic | 40.0% | |
| CGACTGCTCCATATTACTAT+TGG | - | chr3_2:81461999-81462018 | None:intergenic | 40.0% | |
| ! | CGAATGATCTGCCCAATTTT+AGG | - | chr3_2:81462099-81462118 | None:intergenic | 40.0% |
| !! | CAATAACACTGATTTGACGG+GGG | - | chr3_2:81462259-81462278 | None:intergenic | 40.0% |
| TGATAAGTTAACCGTGGTCA+AGG | + | chr3_2:81462479-81462498 | Msa0429880:CDS | 40.0% | |
| GCAGAAGAGCTGAAAGGAAA+GGG | + | chr3_2:81455858-81455877 | Msa0429880:five_prime_UTR | 45.0% | |
| AACACCGATAGCCTACTACT+AGG | - | chr3_2:81456153-81456172 | None:intergenic | 45.0% | |
| TTTGTAAAGATCACGGGCTC+GGG | - | chr3_2:81456355-81456374 | None:intergenic | 45.0% | |
| GGACTCGTACAATTGGATGT+AGG | + | chr3_2:81456404-81456423 | Msa0429880:intron | 45.0% | |
| !! | GAAGAGTGTCTGTGCTTCAT+AGG | - | chr3_2:81456986-81457005 | None:intergenic | 45.0% |
| GACACTGAGACACGTTGAAT+CGG | - | chr3_2:81457008-81457027 | None:intergenic | 45.0% | |
| TGAATAGGCCAGTTGAGAGT+TGG | - | chr3_2:81457176-81457195 | None:intergenic | 45.0% | |
| GACCTCAATTACTTGGCTCA+AGG | + | chr3_2:81457301-81457320 | Msa0429880:intron | 45.0% | |
| TCACAGGAATGATGAAACCC+AGG | - | chr3_2:81458053-81458072 | None:intergenic | 45.0% | |
| AGAACATGTTGTATCCTGGG+AGG | + | chr3_2:81458123-81458142 | Msa0429880:intron | 45.0% | |
| TGATTGCGGTGACTTGATGT+CGG | - | chr3_2:81458274-81458293 | None:intergenic | 45.0% | |
| TAATGGTGTGACGCTCTCTT+TGG | + | chr3_2:81458738-81458757 | Msa0429880:intron | 45.0% | |
| GCTACGATGTAGGAGGAAAA+AGG | + | chr3_2:81458773-81458792 | Msa0429880:intron | 45.0% | |
| TTGAATGCATGTGTCCGAGA+AGG | - | chr3_2:81459323-81459342 | None:intergenic | 45.0% | |
| GGATCTCCAATCACAAAGGT+TGG | - | chr3_2:81460389-81460408 | None:intergenic | 45.0% | |
| CATGGGATCTCCAATCACAA+AGG | - | chr3_2:81460393-81460412 | None:intergenic | 45.0% | |
| GATTGGAGATCCCATGAAGA+AGG | + | chr3_2:81460397-81460416 | Msa0429880:intron | 45.0% | |
| TTACCATAAGCCCTTATGGG+TGG | + | chr3_2:81460558-81460577 | Msa0429880:intron | 45.0% | |
| TGGTTGGAGCATACACTAGA+TGG | + | chr3_2:81460585-81460604 | Msa0429880:intron | 45.0% | |
| ! | CTAGAGCACTCATGAATACC+AGG | + | chr3_2:81460662-81460681 | Msa0429880:intron | 45.0% |
| CCGCGTAACAGTAAGAATTG+TGG | + | chr3_2:81460711-81460730 | Msa0429880:intron | 45.0% | |
| TCACAGGAATGATGAAACCC+AGG | - | chr3_2:81458053-81458072 | None:intergenic | 45.0% | |
| AGAACATGTTGTATCCTGGG+AGG | + | chr3_2:81458123-81458142 | Msa0429880:intron | 45.0% | |
| TGATTGCGGTGACTTGATGT+CGG | - | chr3_2:81458274-81458293 | None:intergenic | 45.0% | |
| TAGGTGCGGCATTTGTGATT+AGG | - | chr3_2:81462453-81462472 | None:intergenic | 45.0% | |
| TAAGTTAACCGTGGTCAAGG+AGG | + | chr3_2:81462482-81462501 | Msa0429880:CDS | 45.0% | |
| !!! | TAAGTTTTATATATTAATAT+AGG | - | chr3_2:81459494-81459513 | None:intergenic | 5.0% |
| ! | GAAAGCGCAGAAGAGCTGAA+AGG | + | chr3_2:81455852-81455871 | Msa0429880:five_prime_UTR | 50.0% |
| CGCAGAAGAGCTGAAAGGAA+AGG | + | chr3_2:81455857-81455876 | Msa0429880:five_prime_UTR | 50.0% | |
| GAAGAGCTGAAAGGAAAGGG+TGG | + | chr3_2:81455861-81455880 | Msa0429880:five_prime_UTR | 50.0% | |
| GGCCTTGAGCCAAGTAATTG+AGG | - | chr3_2:81457306-81457325 | None:intergenic | 50.0% | |
| TCCTCCACTATCGAGTTCCT+GGG | + | chr3_2:81458033-81458052 | Msa0429880:intron | 50.0% | |
| GAAACCCAGGAACTCGATAG+TGG | - | chr3_2:81458040-81458059 | None:intergenic | 50.0% | |
| TCATAAGCGCATATCCTCCC+AGG | - | chr3_2:81458140-81458159 | None:intergenic | 50.0% | |
| TGGGAGGATATGCGCTTATG+AGG | + | chr3_2:81458139-81458158 | Msa0429880:intron | 50.0% | |
| GAGGATATGCGCTTATGAGG+CGG | + | chr3_2:81458142-81458161 | Msa0429880:intron | 50.0% | |
| CGGTGACTTGATGTCGGTAA+CGG | - | chr3_2:81458268-81458287 | None:intergenic | 50.0% | |
| ! | ACGCTCTCTTTGGTGCATCT+TGG | + | chr3_2:81458748-81458767 | Msa0429880:intron | 50.0% |
| ! | CTCTCTTTGGTGCATCTTGG+AGG | + | chr3_2:81458751-81458770 | Msa0429880:intron | 50.0% |
| CATCTTGGAGGCTACGATGT+AGG | + | chr3_2:81458763-81458782 | Msa0429880:intron | 50.0% | |
| GGGAACCCAACCTTTGTGAT+TGG | + | chr3_2:81460380-81460399 | Msa0429880:intron | 50.0% | |
| ACACCACCCATAAGGGCTTA+TGG | - | chr3_2:81460564-81460583 | None:intergenic | 50.0% | |
| CAACCACACACCACCCATAA+GGG | - | chr3_2:81460571-81460590 | None:intergenic | 50.0% | |
| GCCCCACTTGACACTCATAT+AGG | - | chr3_2:81460616-81460635 | None:intergenic | 50.0% | |
| TCCTCCACTATCGAGTTCCT+GGG | + | chr3_2:81458033-81458052 | Msa0429880:intron | 50.0% | |
| GAAACCCAGGAACTCGATAG+TGG | - | chr3_2:81458040-81458059 | None:intergenic | 50.0% | |
| TCATAAGCGCATATCCTCCC+AGG | - | chr3_2:81458140-81458159 | None:intergenic | 50.0% | |
| TGGGAGGATATGCGCTTATG+AGG | + | chr3_2:81458139-81458158 | Msa0429880:intron | 50.0% | |
| GAGGATATGCGCTTATGAGG+CGG | + | chr3_2:81458142-81458161 | Msa0429880:intron | 50.0% | |
| CGGTGACTTGATGTCGGTAA+CGG | - | chr3_2:81458268-81458287 | None:intergenic | 50.0% | |
| TAACCGTGGTCAAGGAGGAT+TGG | + | chr3_2:81462487-81462506 | Msa0429880:CDS | 50.0% | |
| AACCGTGGTCAAGGAGGATT+GGG | + | chr3_2:81462488-81462507 | Msa0429880:CDS | 50.0% | |
| GGAGGATTGGGCTACCTATA+TGG | + | chr3_2:81462500-81462519 | Msa0429880:CDS | 50.0% | |
| GGATTGGGCTACCTATATGG+TGG | + | chr3_2:81462503-81462522 | Msa0429880:CDS | 50.0% | |
| CTCCTCCACTATCGAGTTCC+TGG | + | chr3_2:81458032-81458051 | Msa0429880:intron | 55.0% | |
| ! | ACCCAGGAACTCGATAGTGG+AGG | - | chr3_2:81458037-81458056 | None:intergenic | 55.0% |
| CTTGGAGGCTACGATGTAGG+AGG | + | chr3_2:81458766-81458785 | Msa0429880:intron | 55.0% | |
| AGCGACAACACCCCCACATT+GGG | - | chr3_2:81460046-81460065 | None:intergenic | 55.0% | |
| AAGCGACAACACCCCCACAT+TGG | - | chr3_2:81460047-81460066 | None:intergenic | 55.0% | |
| AAGCCCTTATGGGTGGTGTG+TGG | + | chr3_2:81460565-81460584 | Msa0429880:intron | 55.0% | |
| CCAACCACACACCACCCATA+AGG | - | chr3_2:81460572-81460591 | None:intergenic | 55.0% | |
| CCTTATGGGTGGTGTGTGGT+TGG | + | chr3_2:81460569-81460588 | Msa0429880:intron | 55.0% | |
| ATGAATACCAGGCACGCGCA+CGG | + | chr3_2:81460673-81460692 | Msa0429880:intron | 55.0% | |
| TTACGCGGTTGTGCGCGAAT+AGG | - | chr3_2:81460699-81460718 | None:intergenic | 55.0% | |
| CGGAACGGTGTAGCAAGCTA+TGG | - | chr3_2:81460844-81460863 | None:intergenic | 55.0% | |
| CTCCTCCACTATCGAGTTCC+TGG | + | chr3_2:81458032-81458051 | Msa0429880:intron | 55.0% | |
| ! | ACCCAGGAACTCGATAGTGG+AGG | - | chr3_2:81458037-81458056 | None:intergenic | 55.0% |
| AGCCCAATCCTCCTTGACCA+CGG | - | chr3_2:81462493-81462512 | None:intergenic | 55.0% | |
| !! | AGTGCTCTAGAGACCCGCCA+CGG | - | chr3_2:81460652-81460671 | None:intergenic | 60.0% |
| GTGACGACGCCCCCCACATT+GGG | - | chr3_2:81459971-81459990 | None:intergenic | 65.0% | |
| AGTGACGACGCCCCCCACAT+TGG | - | chr3_2:81459972-81459991 | None:intergenic | 65.0% | |
| CCGCCACGGTCTCATGCAAG+CGG | - | chr3_2:81460638-81460657 | None:intergenic | 65.0% | |
| CCGCTTGCATGAGACCGTGG+CGG | + | chr3_2:81460635-81460654 | Msa0429880:intron | 65.0% | |
| CGCTTGCATGAGACCGTGGC+GGG | + | chr3_2:81460636-81460655 | Msa0429880:intron | 65.0% | |
| GGGCCGCTTGCATGAGACCG+TGG | + | chr3_2:81460632-81460651 | Msa0429880:intron | 70.0% | |
| GAATAGGCCGTGCGCGTGCC+TGG | - | chr3_2:81460683-81460702 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 81455829 | 81462536 | 81455829 | ID=Msa0429880;Name=Msa0429880 |
| chr3_2 | mRNA | 81455829 | 81462536 | 81455829 | ID=Msa0429880-mRNA-1;Parent=Msa0429880;Name=Msa0429880-mRNA-1;_AED=0.02;_eAED=0.02;_QI=195|1|0.8|1|0.25|0.2|5|0|46 |
| chr3_2 | exon | 81455829 | 81455900 | 81455829 | ID=Msa0429880-mRNA-1:exon:22464;Parent=Msa0429880-mRNA-1 |
| chr3_2 | exon | 81457596 | 81457629 | 81457596 | ID=Msa0429880-mRNA-1:exon:22465;Parent=Msa0429880-mRNA-1 |
| chr3_2 | exon | 81461737 | 81461771 | 81461737 | ID=Msa0429880-mRNA-1:exon:22466;Parent=Msa0429880-mRNA-1 |
| chr3_2 | exon | 81462254 | 81462352 | 81462254 | ID=Msa0429880-mRNA-1:exon:22467;Parent=Msa0429880-mRNA-1 |
| chr3_2 | exon | 81462444 | 81462536 | 81462444 | ID=Msa0429880-mRNA-1:exon:22468;Parent=Msa0429880-mRNA-1 |
| chr3_2 | five_prime_UTR | 81455829 | 81455900 | 81455829 | ID=Msa0429880-mRNA-1:five_prime_utr;Parent=Msa0429880-mRNA-1 |
| chr3_2 | five_prime_UTR | 81457596 | 81457629 | 81457596 | ID=Msa0429880-mRNA-1:five_prime_utr;Parent=Msa0429880-mRNA-1 |
| chr3_2 | five_prime_UTR | 81461737 | 81461771 | 81461737 | ID=Msa0429880-mRNA-1:five_prime_utr;Parent=Msa0429880-mRNA-1 |
| chr3_2 | five_prime_UTR | 81462254 | 81462307 | 81462254 | ID=Msa0429880-mRNA-1:five_prime_utr;Parent=Msa0429880-mRNA-1 |
| chr3_2 | CDS | 81462308 | 81462352 | 81462308 | ID=Msa0429880-mRNA-1:cds;Parent=Msa0429880-mRNA-1 |
| chr3_2 | CDS | 81462444 | 81462536 | 81462444 | ID=Msa0429880-mRNA-1:cds;Parent=Msa0429880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
