AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0381000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381000 MtrunA17_Chr3g0134751 97.005 868 19 3 1 867 1 862 0.0 1721
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381000 AT1G27752.1 51.492 905 369 14 1 867 1 873 0.0 724
Msa0381000 AT1G27752.2 49.034 673 295 10 212 867 15 656 7.14e-173 516

Find 258 sgRNAs with CRISPR-Local

Find 586 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCCTCTCCCTCTGTTATT+TGG 0.136498 3_1:+82923558 None:intergenic
TTAGCATTGGCTCTGGCCTC+TGG 0.143548 3_1:-82922854 Msa0381000:three_prime_UTR
TCAACAGCTTTCTGCAATTT+AGG 0.158835 3_1:-82930222 Msa0381000:CDS
CAACTAAACATTAAAGTTAA+AGG 0.170211 3_1:+82922995 None:intergenic
GACTTTCATGTGTTCTGTTT+TGG 0.172138 3_1:-82923232 Msa0381000:three_prime_UTR
GGTAACCAATTCCATGTTTC+TGG 0.178074 3_1:-82923705 Msa0381000:CDS
CTATGCTCCCAGATTAAAAT+TGG 0.206599 3_1:-82922934 Msa0381000:three_prime_UTR
CAGGCCTGATCCAAGTATTT+TGG 0.209716 3_1:-82924141 Msa0381000:CDS
GAAGAAATGTTTCCTTCTTA+TGG 0.219000 3_1:+82924993 None:intergenic
ATTCTTTGAATGACCTCTTC+TGG 0.235306 3_1:+82924440 None:intergenic
GAACAACTTAAATATATATC+TGG 0.239896 3_1:-82924653 Msa0381000:CDS
TGAAACTAGCCAGAGTTATA+TGG 0.244718 3_1:+82923411 None:intergenic
AAAACGCCTCTAATACAAAA+TGG 0.245784 3_1:-82923932 Msa0381000:CDS
AGAATGAGATTGGTAAAGTT+TGG 0.246664 3_1:-82925190 Msa0381000:CDS
GTACAGGTCTTATTTGCTTC+TGG 0.257207 3_1:-82926460 Msa0381000:intron
GACATGGTGTATTGCTCTTC+TGG 0.258029 3_1:-82923333 Msa0381000:three_prime_UTR
TAGCATTGGCTCTGGCCTCT+GGG 0.277520 3_1:-82922853 Msa0381000:three_prime_UTR
TTTAAAAGGGTAATTATCTA+AGG 0.284972 3_1:+82922690 None:intergenic
GAAGCTGTCGCTGCTGGTTT+TGG 0.286863 3_1:-82930807 Msa0381000:CDS
CTTCATCTGTCTGCATGGTT+TGG 0.298863 3_1:+82924564 None:intergenic
TTTCCTTCTTATGGATTTCC+TGG 0.302068 3_1:+82925002 None:intergenic
AGACAATTACAACAACAATA+AGG 0.304335 3_1:-82931009 Msa0381000:CDS
AGAGGTAGAGGAAGGGGAGG+AGG 0.310111 3_1:-82923537 Msa0381000:CDS
TACAGTATCATTAAGTTTCC+AGG 0.314193 3_1:-82925020 Msa0381000:CDS
ACAGAGATCTTTGCAGAATA+TGG 0.326279 3_1:+82924593 None:intergenic
TTCATACCGGAATCCAGTTT+TGG 0.327117 3_1:-82923066 Msa0381000:three_prime_UTR
CTACCCTACTTAGTGGAATA+AGG 0.328288 3_1:-82922736 Msa0381000:three_prime_UTR
TTAGGGAAGTTGACAAGGTT+GGG 0.332272 3_1:+82930943 None:intergenic
TCGGGGAAATCAAGGGAAAC+AGG 0.333370 3_1:-82923972 Msa0381000:CDS
CAACAAACTGGTTCTGGTTC+TGG 0.333487 3_1:-82930909 Msa0381000:CDS
TGGCTTGGTCCTTCCTGTAA+TGG 0.336786 3_1:+82923505 None:intergenic
TCCAGAGAAATGCTTCTTCA+TGG 0.337644 3_1:+82923485 None:intergenic
AGAGGGAGTGGCGGTGGCAG+GGG 0.340036 3_1:-82923672 Msa0381000:CDS
AGAGGGAGAGGTAGAGGAAG+GGG 0.352690 3_1:-82923543 Msa0381000:CDS
CAAAACTAGATAACCAAAAC+TGG 0.356578 3_1:+82923053 None:intergenic
TCAAATACAAAAGTTTCTAA+TGG 0.357068 3_1:-82924239 Msa0381000:CDS
GTTACCACCTCCTCCCTTGT+AGG 0.357080 3_1:+82923722 None:intergenic
TTCGTCAGGTAGGGTTCAAC+CGG 0.357397 3_1:-82930871 Msa0381000:CDS
CTGTTCCAGAAACATGGAAT+TGG 0.362186 3_1:+82923700 None:intergenic
AAGAAATACCTCATCTCAAC+AGG 0.364953 3_1:+82925559 None:intergenic
CTGGAAGAGGGATGCTATCT+AGG 0.368744 3_1:+82925125 None:intergenic
GAATGAGATTGGTAAAGTTT+GGG 0.371262 3_1:-82925189 Msa0381000:CDS
GGAGAGGGAGTGGCGGTGGC+AGG 0.373843 3_1:-82923674 Msa0381000:CDS
TTGACTGGTAAAGTCTACTA+TGG 0.375504 3_1:-82923265 Msa0381000:three_prime_UTR
GGTCTAAGCGTAGCAGAATC+TGG 0.375638 3_1:-82924038 Msa0381000:CDS
CTTTGAAGGAGACTATTAAC+AGG 0.377429 3_1:-82924619 Msa0381000:CDS
AAACAACAACAAACTGGTTC+TGG 0.379109 3_1:-82930915 Msa0381000:CDS
AGAGGGAGAGGGAGAGGTAG+AGG 0.379505 3_1:-82923549 Msa0381000:CDS
TATTCCCTGATTACGGTAAA+GGG 0.381006 3_1:-82924499 Msa0381000:CDS
CCCGCTAACAGCAGTGGACT+TGG 0.382935 3_1:+82924346 None:intergenic
GAAGATGTTAAGAATGAGAT+TGG 0.384834 3_1:-82925200 Msa0381000:CDS
GAAGGGAGAGGGAGTGGCGG+TGG 0.388652 3_1:-82923678 Msa0381000:CDS
GACAATTACAACAACAATAA+GGG 0.388889 3_1:-82931008 Msa0381000:CDS
AGATGCTGAGCTTCCTTGCC+AGG 0.390370 3_1:-82925318 Msa0381000:CDS
GGGAGAGGTAGAGGAAGGGG+AGG 0.392878 3_1:-82923540 Msa0381000:CDS
AGTTGAGAAGCATTTGTATA+CGG 0.393223 3_1:-82931131 Msa0381000:five_prime_UTR
AAGGCTCGGTTGTTGTTCAT+TGG 0.397684 3_1:-82922717 Msa0381000:three_prime_UTR
GGGGCTAGAGGGATTGTTGC+TGG 0.398706 3_1:-82930172 Msa0381000:CDS
ACGATGCAGTTCATCATTAG+AGG 0.402493 3_1:-82927507 Msa0381000:intron
AAACGCCTCTAATACAAAAT+GGG 0.406638 3_1:-82923931 Msa0381000:CDS
TCATTATTGTCCAAAATACT+TGG 0.412008 3_1:+82924131 None:intergenic
GAGGTAGAAACAACCATTAC+AGG 0.412585 3_1:-82923518 Msa0381000:CDS
AGAATATCTGCTCTGATGAC+TGG 0.413031 3_1:+82925067 None:intergenic
AGGGACCTATTCCCTGATTA+CGG 0.415459 3_1:-82924506 Msa0381000:CDS
TCTGTCTGCATGGTTTGGTT+CGG 0.416658 3_1:+82924569 None:intergenic
CAAGATGAAGCTGTCGCTGC+TGG 0.420506 3_1:-82930813 Msa0381000:CDS
GAAACTAGCCAGAGTTATAT+GGG 0.426798 3_1:+82923412 None:intergenic
CAAATACAAAAGTTTCTAAT+GGG 0.429323 3_1:-82924238 Msa0381000:CDS
GGCAGGGGAAAGAGAGAAGG+GGG 0.431243 3_1:-82923657 Msa0381000:CDS
AGTCATCAGAGCAGATATTC+TGG 0.434434 3_1:-82925065 Msa0381000:CDS
GGAAACATCTTTGTGGCAGC+TGG 0.434595 3_1:+82925106 None:intergenic
CTATTCCCTGATTACGGTAA+AGG 0.437817 3_1:-82924500 Msa0381000:CDS
CTTTACCGTAATCAGGGAAT+AGG 0.437909 3_1:+82924501 None:intergenic
TTTCTCCTCCTTGGGAAGCA+TGG 0.441829 3_1:-82923296 Msa0381000:three_prime_UTR
CAACAACTTTCTGAGATTCA+AGG 0.442201 3_1:+82930760 None:intergenic
AAATGCTTCTCAACTGACTT+AGG 0.443806 3_1:+82931139 None:intergenic
AGCAATAGCAATACTTCGTC+AGG 0.449539 3_1:-82930885 Msa0381000:CDS
GCTAATTCCGTCCATGCAAA+AGG 0.451122 3_1:-82925284 Msa0381000:CDS
CTTAGGGAAGTTGACAAGGT+TGG 0.451960 3_1:+82930942 None:intergenic
GGAGAGGGAGAGGTAGAGGA+AGG 0.452918 3_1:-82923545 Msa0381000:CDS
AGAAATGCTTCTTCATGGCT+TGG 0.453241 3_1:+82923490 None:intergenic
ATCTTTGTGGCAGCTGGAAG+AGG 0.454654 3_1:+82925112 None:intergenic
TTGTCCAAAATACTTGGATC+AGG 0.456872 3_1:+82924137 None:intergenic
ATCAGAGCTACCCTACTTAG+TGG 0.456936 3_1:-82922743 Msa0381000:intron
TCGAGCACCAGGATCTCTAT+TGG 0.458199 3_1:+82930001 None:intergenic
AGCCAGAGTTATATGGGTAT+TGG 0.459362 3_1:+82923418 None:intergenic
AGATAACCAAAACTGGATTC+CGG 0.460121 3_1:+82923060 None:intergenic
TGCAGAATTGACAAGATTGC+TGG 0.460148 3_1:-82928578 Msa0381000:intron
GCCATGAAGAAGCATTTCTC+TGG 0.460962 3_1:-82923486 Msa0381000:CDS
AAATGATGCAATTGTGTCAA+TGG 0.462048 3_1:-82925629 Msa0381000:CDS
GCCTCTGGGGTCGAAGTCAT+AGG 0.462221 3_1:-82922839 Msa0381000:three_prime_UTR
AAAGAATTGATACATGGTCT+TGG 0.465801 3_1:-82923792 Msa0381000:CDS
AGATATATATAAAATAAAAC+AGG 0.466673 3_1:-82922971 Msa0381000:three_prime_UTR
GCAGGGGAAAGAGAGAAGGG+GGG 0.466831 3_1:-82923656 Msa0381000:CDS
GCTTTCTGCAATTTAGGAGC+AGG 0.469684 3_1:-82930216 Msa0381000:CDS
ATTAAAGTTAAAGGAAATGT+AGG 0.469688 3_1:+82923004 None:intergenic
AAGAAGGAAACATTTCTTCA+AGG 0.470689 3_1:-82924989 Msa0381000:CDS
CAATATATCAAGCAGGATTG+AGG 0.471607 3_1:-82924951 Msa0381000:CDS
GCCAAGTCCACTGCTGTTAG+CGG 0.473751 3_1:-82924347 Msa0381000:CDS
AGCGGGAAAGAGAAAGGAAA+AGG 0.473781 3_1:-82924290 Msa0381000:CDS
AATATATCAAGCAGGATTGA+GGG 0.474349 3_1:-82924950 Msa0381000:CDS
TTGATACATGGTCTTGGACG+TGG 0.478904 3_1:-82923786 Msa0381000:CDS
GAGAGGGAGTGGCGGTGGCA+GGG 0.479141 3_1:-82923673 Msa0381000:CDS
AATGCTAACCCTCCTTTGAA+TGG 0.480130 3_1:+82922869 None:intergenic
ATTGAGGGATTACAGCATAA+TGG 0.481131 3_1:-82924935 Msa0381000:intron
AAGAGTTTAATGTCTTGTAA+AGG 0.482216 3_1:-82923093 Msa0381000:three_prime_UTR
CATTTCTTCAAGGTGTTGAA+AGG 0.482501 3_1:-82924979 Msa0381000:CDS
TTCCCTCACCGTGGGGCTAG+AGG 0.483084 3_1:-82930184 Msa0381000:CDS
AATTACAGCTACAAAGTGTC+TGG 0.483452 3_1:-82923867 Msa0381000:CDS
TTTCCAAGTGGAGCAGATGA+TGG 0.483469 3_1:+82924188 None:intergenic
CTAATACAAAATGGGGCTCT+AGG 0.483722 3_1:-82923923 Msa0381000:CDS
TCATAATGATCTGAAGTGCT+TGG 0.485164 3_1:-82924402 Msa0381000:CDS
CTAATTCCGTCCATGCAAAA+GGG 0.486927 3_1:-82925283 Msa0381000:CDS
GTGGCAGGGGAAAGAGAGAA+GGG 0.488538 3_1:-82923659 Msa0381000:CDS
ATGCTTTGCATGCTCAGCCT+TGG 0.488541 3_1:-82927592 Msa0381000:CDS
CAGAAAATGTCGAATCGTTA+CGG 0.489738 3_1:-82931044 Msa0381000:exon
GCATCAATGACCCTTCTGTC+AGG 0.490097 3_1:+82924210 None:intergenic
ATGTCGAATCGTTACGGTCA+AGG 0.491585 3_1:-82931038 Msa0381000:CDS
GGAACAGAAGGGAGAGGGAG+TGG 0.492302 3_1:-82923684 Msa0381000:CDS
GAATGACCTCTTCTGGATTG+TGG 0.492612 3_1:+82924447 None:intergenic
GAGAGGGAGAGGTAGAGGAA+GGG 0.495109 3_1:-82923544 Msa0381000:CDS
AATAACAGAGGGAGAGGGAG+AGG 0.496230 3_1:-82923555 Msa0381000:CDS
TCCCTCACCGTGGGGCTAGA+GGG 0.496525 3_1:-82930183 Msa0381000:CDS
GCTCGGTTGTTGTTCATTGG+AGG 0.496796 3_1:-82922714 Msa0381000:three_prime_UTR
GCACATATATCAAACAACTT+TGG 0.497604 3_1:+82928619 None:intergenic
CGAGCCTTATTCCACTAAGT+AGG 0.498790 3_1:+82922732 None:intergenic
ATGCCATCATCTGCTCCACT+TGG 0.499405 3_1:-82924191 Msa0381000:CDS
GCTGTTAGCGGGAAAGATAA+AGG 0.500884 3_1:-82924335 Msa0381000:CDS
AGCATCTTCATCTGTCTGCA+TGG 0.503904 3_1:+82924559 None:intergenic
TAACTTTAGATATGGGAATG+AGG 0.504342 3_1:-82925341 Msa0381000:intron
TGGCAGGGGAAAGAGAGAAG+GGG 0.504607 3_1:-82923658 Msa0381000:CDS
GTGTACTAATTGATGTTAGC+GGG 0.504771 3_1:-82924307 Msa0381000:CDS
TTCCATGTTTCTGGAACAGA+AGG 0.505044 3_1:-82923696 Msa0381000:CDS
GTCAGGTAGGGTTCAACCGG+GGG 0.505227 3_1:-82930868 Msa0381000:CDS
AGGTCTTCCAATAGAGATCC+TGG 0.508009 3_1:-82930008 Msa0381000:CDS
GATGACTGGGTCTTCAACAT+TGG 0.511843 3_1:+82925081 None:intergenic
AAATTGGGCGTAGTTGACTA+AGG 0.512251 3_1:-82922918 Msa0381000:three_prime_UTR
GAATATCTGCTCTGATGACT+GGG 0.512641 3_1:+82925068 None:intergenic
TATTGAACATAATCAACATC+AGG 0.514043 3_1:-82923628 Msa0381000:CDS
GATGTTAGCGGGAAAGAGAA+AGG 0.515540 3_1:-82924296 Msa0381000:CDS
ACTGGGTCTTCAACATTGGC+AGG 0.519457 3_1:+82925085 None:intergenic
TCTTGGCGCGGTACAGAAGT+TGG 0.521142 3_1:-82923751 Msa0381000:CDS
GAAACAGGGACCGGAAACTC+TGG 0.522351 3_1:-82923957 Msa0381000:CDS
TCCCTTCTGTTCCAGAAACA+TGG 0.523000 3_1:+82923694 None:intergenic
TTCTCTTAGGGAAGTTGACA+AGG 0.525769 3_1:+82930938 None:intergenic
GGTGGCAGGGGAAAGAGAGA+AGG 0.525868 3_1:-82923660 Msa0381000:CDS
TTTCCAGGAAATCCATAAGA+AGG 0.527622 3_1:-82925005 Msa0381000:CDS
AAATCAAGGGAAACAGGGAC+CGG 0.528322 3_1:-82923966 Msa0381000:CDS
GGTCCAAATAACAGAGGGAG+AGG 0.528474 3_1:-82923561 Msa0381000:CDS
CCAAGTCCACTGCTGTTAGC+GGG 0.528738 3_1:-82924346 Msa0381000:CDS
AACAACTTAAATATATATCT+GGG 0.529820 3_1:-82924652 Msa0381000:CDS
GTATCAGCTGGTCGAGCACC+AGG 0.532811 3_1:+82929990 None:intergenic
GGAATTTCAATATATCAAGC+AGG 0.534239 3_1:-82924958 Msa0381000:CDS
GATTCCTACAAGGGAGGAGG+TGG 0.536721 3_1:-82923726 Msa0381000:CDS
AGCATGGCTCATACATTGAC+TGG 0.536740 3_1:-82923280 Msa0381000:three_prime_UTR
TATGCTCCCAGATTAAAATT+GGG 0.538998 3_1:-82922933 Msa0381000:three_prime_UTR
TCCCTCTAGCCCCACGGTGA+GGG 0.540839 3_1:+82930182 None:intergenic
ATTGGCAGGAAACATCTTTG+TGG 0.542013 3_1:+82925099 None:intergenic
GAAGTGGAGGGTAGAGATCA+AGG 0.542597 3_1:-82923582 Msa0381000:CDS
TTGTAAAGGTTACTTCATAC+CGG 0.543313 3_1:-82923079 Msa0381000:three_prime_UTR
CCACAGTACTATGTCAAAGA+TGG 0.543656 3_1:-82923894 Msa0381000:CDS
GGTATGATTTCCCTCACCGT+GGG 0.544651 3_1:-82930192 Msa0381000:CDS
AAGCATTTCTCTGGATTGAG+TGG 0.544793 3_1:-82923477 Msa0381000:CDS
ATCTTTCCCGCTAACAGCAG+TGG 0.545828 3_1:+82924340 None:intergenic
AGCGGGAAAGATAAAGGAAA+AGG 0.546036 3_1:-82924329 Msa0381000:CDS
TGATACATGGTCTTGGACGT+GGG 0.546273 3_1:-82923785 Msa0381000:CDS
GCAGCGACAGCTTCATCTTG+CGG 0.550531 3_1:+82930816 None:intergenic
ATCTGGGAGCATAGTTGAGT+CGG 0.550770 3_1:+82922943 None:intergenic
CGGGGAAATCAAGGGAAACA+GGG 0.551304 3_1:-82923971 Msa0381000:CDS
AGTCCTTGTTGATTGAGACT+TGG 0.551375 3_1:-82923192 Msa0381000:three_prime_UTR
GCGAATCATGCAACCTGGCA+AGG 0.551653 3_1:+82925305 None:intergenic
TTCTGCAATTTAGGAGCAGG+TGG 0.552113 3_1:-82930213 Msa0381000:CDS
TGGCGCAGAAGATGGTGGAT+TGG 0.552284 3_1:-82930787 Msa0381000:CDS
TAGGGAAGTTGACAAGGTTG+GGG 0.554340 3_1:+82930944 None:intergenic
AACAACTTTCTGAGATTCAA+GGG 0.557535 3_1:+82930761 None:intergenic
CGTCAGGTAGGGTTCAACCG+GGG 0.558173 3_1:-82930869 Msa0381000:CDS
CTGTTGATGCCATTCAAAGG+AGG 0.559391 3_1:-82922878 Msa0381000:three_prime_UTR
TAGTAAGAAATGTATGTTGA+TGG 0.559472 3_1:+82923442 None:intergenic
TCTCTTCCCCTGTTGAGATG+AGG 0.560513 3_1:-82925567 Msa0381000:intron
AGGAGGGTTAGCATTGGCTC+TGG 0.560877 3_1:-82922861 Msa0381000:three_prime_UTR
GAGCCTTATTCCACTAAGTA+GGG 0.561107 3_1:+82922733 None:intergenic
TCGTCAGGTAGGGTTCAACC+GGG 0.564089 3_1:-82930870 Msa0381000:CDS
TGACTGTTGATGCCATTCAA+AGG 0.567703 3_1:-82922881 Msa0381000:three_prime_UTR
AGCCAATACCCATATAACTC+TGG 0.573207 3_1:-82923420 Msa0381000:three_prime_UTR
TAGCAATACTTCGTCAGGTA+GGG 0.573778 3_1:-82930880 Msa0381000:CDS
CTCCACTTGGAAAATTTGTG+AGG 0.575856 3_1:-82924178 Msa0381000:CDS
GCTGTTGAGAAACTCATGTA+GGG 0.577070 3_1:+82930237 None:intergenic
ATAGCAATACTTCGTCAGGT+AGG 0.577589 3_1:-82930881 Msa0381000:CDS
CTACTTAGTGGAATAAGGCT+CGG 0.581146 3_1:-82922731 Msa0381000:three_prime_UTR
AAAACCCTTTACCGTAATCA+GGG 0.581322 3_1:+82924495 None:intergenic
TCTGTACCGCGCCAAGAGGA+AGG 0.584919 3_1:+82923757 None:intergenic
TCTTTGTGGCAGCTGGAAGA+GGG 0.585342 3_1:+82925113 None:intergenic
ATCAAGGTCCAAATAACAGA+GGG 0.586072 3_1:-82923566 Msa0381000:CDS
CTTGGATACTTCATTAGAGA+CGG 0.588179 3_1:-82924384 Msa0381000:CDS
GGTGTACTAATTGATGTTAG+CGG 0.589017 3_1:-82924308 Msa0381000:CDS
ATCTGATGATGTTTCTGAAG+TGG 0.590047 3_1:-82923598 Msa0381000:CDS
ACAGAAGGGAGAGGGAGTGG+CGG 0.592048 3_1:-82923681 Msa0381000:CDS
ATCCCTCTAGCCCCACGGTG+AGG 0.593165 3_1:+82930181 None:intergenic
TTTGAACTGAGTGTATCAGC+TGG 0.593405 3_1:+82929978 None:intergenic
AACAGAACACATGAAAGTCT+CGG 0.595548 3_1:+82923236 None:intergenic
CGAATCGTTACGGTCAAGGT+AGG 0.597450 3_1:-82931034 Msa0381000:CDS
AACTTCTGTACCGCGCCAAG+AGG 0.599243 3_1:+82923753 None:intergenic
GCAGATTCCTACAAGGGAGG+AGG 0.599612 3_1:-82923729 Msa0381000:CDS
TGAGGAAATCTAGAGCCGAC+AGG 0.601210 3_1:-82924160 Msa0381000:CDS
TGTTGATGCCATTCAAAGGA+GGG 0.601897 3_1:-82922877 Msa0381000:three_prime_UTR
ATGGGAAGAACCTGACAGAA+GGG 0.601920 3_1:-82924220 Msa0381000:CDS
TGAGATTGGTAAAGTTTGGG+TGG 0.606500 3_1:-82925186 Msa0381000:CDS
CATCCAAGTCTCAATCAACA+AGG 0.609027 3_1:+82923189 None:intergenic
CTCAGTTCAAAAGATCATGA+AGG 0.609132 3_1:-82929966 Msa0381000:intron
GTTTCTGGAACAGAAGGGAG+AGG 0.609356 3_1:-82923690 Msa0381000:CDS
CCCAAGGAGGAGAAAACTGT+CGG 0.609438 3_1:+82923304 None:intergenic
AATGGGAAGAACCTGACAGA+AGG 0.610316 3_1:-82924221 Msa0381000:CDS
AGCTGTTGAGAAACTCATGT+AGG 0.610389 3_1:+82930236 None:intergenic
GATACATGGTCTTGGACGTG+GGG 0.612696 3_1:-82923784 Msa0381000:CDS
CATCGTCACTTAAATAGCAA+AGG 0.615864 3_1:+82925152 None:intergenic
ATTCAAAGGAGGGTTAGCAT+TGG 0.615871 3_1:-82922867 Msa0381000:three_prime_UTR
TCTTTCGTATAAGATAATGT+TGG 0.617780 3_1:+82923112 None:intergenic
TGACACAGTCTCTAATATTG+TGG 0.622918 3_1:-82925230 Msa0381000:CDS
AGCATTGGCTCTGGCCTCTG+GGG 0.623149 3_1:-82922852 Msa0381000:three_prime_UTR
GCTCAGAAAGAATTGATACA+TGG 0.624461 3_1:-82923798 Msa0381000:CDS
GGGCAACCTTCCTCTTGGCG+CGG 0.625389 3_1:-82923763 Msa0381000:CDS
GAAGTTGGCAGATTCCTACA+AGG 0.625676 3_1:-82923736 Msa0381000:CDS
TGGAGTAGAAGAAAGTGAAG+TGG 0.626481 3_1:-82924018 Msa0381000:CDS
TGTATGAGCCATGCTTCCCA+AGG 0.626489 3_1:+82923288 None:intergenic
CAACAATCCCTCTAGCCCCA+CGG 0.627910 3_1:+82930176 None:intergenic
TTCAGGGTGGATATTCGTTG+AGG 0.631460 3_1:-82924678 Msa0381000:intron
TTTCTGGAACAGAAGGGAGA+GGG 0.633064 3_1:-82923689 Msa0381000:CDS
TTAGGAACGAATTTCATCTG+TGG 0.633485 3_1:+82930975 None:intergenic
AATACTTGGATCAGGCCTGT+CGG 0.634432 3_1:+82924145 None:intergenic
GTGGACTTGGCTTGTAACTG+TGG 0.636167 3_1:+82924359 None:intergenic
AATTAGCGAATCATGCAACC+TGG 0.636551 3_1:+82925300 None:intergenic
GTCCAAATAACAGAGGGAGA+GGG 0.637429 3_1:-82923560 Msa0381000:CDS
ATATATAAAATAAAACAGGT+TGG 0.638331 3_1:-82922967 Msa0381000:three_prime_UTR
GCTAAATTATCATGTAACCA+AGG 0.640792 3_1:+82927575 None:intergenic
TGGTATGATTTCCCTCACCG+TGG 0.642009 3_1:-82930193 Msa0381000:CDS
TGATGATGTTTCTGAAGTGG+AGG 0.644476 3_1:-82923595 Msa0381000:CDS
TCAACAGTCAAAATGAGTTG+AGG 0.646683 3_1:+82922894 None:intergenic
GATCAAGGTCCAAATAACAG+AGG 0.648323 3_1:-82923567 Msa0381000:CDS
TCAGGTAGGGTTCAACCGGG+GGG 0.651485 3_1:-82930867 Msa0381000:CDS
CTATGACCACAATCCAGAAG+AGG 0.655302 3_1:-82924453 Msa0381000:CDS
AACGCCTCTAATACAAAATG+GGG 0.658920 3_1:-82923930 Msa0381000:CDS
CCATCTTTGACATAGTACTG+TGG 0.659242 3_1:+82923894 None:intergenic
TAATTCCGTCCATGCAAAAG+GGG 0.660109 3_1:-82925282 Msa0381000:CDS
TTTGAAGGAGACTATTAACA+GGG 0.660401 3_1:-82924618 Msa0381000:CDS
ATGAGCCATGCTTCCCAAGG+AGG 0.666773 3_1:+82923291 None:intergenic
ATCAATCAGACGTATAGACA+TGG 0.675680 3_1:-82923349 Msa0381000:three_prime_UTR
TCCTATGACTTCGACCCCAG+AGG 0.677119 3_1:+82922838 None:intergenic
GTATGATTTCCCTCACCGTG+GGG 0.678147 3_1:-82930191 Msa0381000:CDS
AGAAATACCTCATCTCAACA+GGG 0.678853 3_1:+82925560 None:intergenic
TAGAAACAACCATTACAGGA+AGG 0.681684 3_1:-82923514 Msa0381000:CDS
AAGTTGGCAGATTCCTACAA+GGG 0.684550 3_1:-82923735 Msa0381000:CDS
TTGGCAGATTCCTACAAGGG+AGG 0.685644 3_1:-82923732 Msa0381000:CDS
TATACTAATTGATTCTACGT+CGG 0.693386 3_1:-82924267 Msa0381000:CDS
GATGATGTTTCTGAAGTGGA+GGG 0.699043 3_1:-82923594 Msa0381000:CDS
GAAATACCTCATCTCAACAG+GGG 0.699731 3_1:+82925561 None:intergenic
ATACATGGTCTTGGACGTGG+GGG 0.701593 3_1:-82923783 Msa0381000:CDS
TCCATGTTTCTGGAACAGAA+GGG 0.702506 3_1:-82923695 Msa0381000:CDS
ACAATATCATGAAAACACGA+CGG 0.757457 3_1:+82930122 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTCTCAAATTATTAT+CGG - chr3_1:82923271-82923290 Msa0381000:three_prime_UTR 10.0%
!! AATAAGAAAATTAAGTAATA+GGG + chr3_1:82924167-82924186 None:intergenic 10.0%
!! AAATAAGAAAATTAAGTAAT+AGG + chr3_1:82924168-82924187 None:intergenic 10.0%
!! AAAAGAAAATAAGAAATATA+AGG + chr3_1:82924686-82924705 None:intergenic 10.0%
!!! TTTTTTCATTAACATAAAAT+GGG - chr3_1:82925673-82925692 Msa0381000:intron 10.0%
!!! TTTGATTTCAATATTTTTTT+TGG - chr3_1:82925989-82926008 Msa0381000:intron 10.0%
!! GAATAATAAAATAGAAATAA+TGG - chr3_1:82926678-82926697 Msa0381000:intron 10.0%
!!! AAATTCATAATTTTCATTTT+GGG - chr3_1:82927360-82927379 Msa0381000:intron 10.0%
!! AGATATATATAAAATAAAAC+AGG - chr3_1:82930877-82930896 Msa0381000:CDS 10.0%
!! AAAACTCATAGTAATATAAA+TGG + chr3_1:82924769-82924788 None:intergenic 15.0%
!! AATATTCTTAAAAATGTGTT+TGG - chr3_1:82925014-82925033 Msa0381000:CDS 15.0%
!! ATATTCTTAAAAATGTGTTT+GGG - chr3_1:82925015-82925034 Msa0381000:CDS 15.0%
!!! AAAATCCTTTATTTTGTTTT+TGG - chr3_1:82925360-82925379 Msa0381000:intron 15.0%
!! AAGAATTATTTAGAAACTAA+AGG - chr3_1:82925415-82925434 Msa0381000:intron 15.0%
!! TATATTGTACCAAATATATT+TGG + chr3_1:82925640-82925659 None:intergenic 15.0%
!!! CATTTTATGTTAATGAAAAA+AGG + chr3_1:82925674-82925693 None:intergenic 15.0%
!!! CTTTTTTCATTAACATAAAA+TGG - chr3_1:82925672-82925691 Msa0381000:intron 15.0%
!! AATAATATCATAAATTCCAT+TGG + chr3_1:82925913-82925932 None:intergenic 15.0%
!! ATGGAATTTATGATATTATT+TGG - chr3_1:82925913-82925932 Msa0381000:intron 15.0%
!! ATAGTTAAATTATGGTATAA+AGG - chr3_1:82927322-82927341 Msa0381000:intron 15.0%
!!! CAAATTCATAATTTTCATTT+TGG - chr3_1:82927359-82927378 Msa0381000:intron 15.0%
!!! AATTCATAATTTTCATTTTG+GGG - chr3_1:82927361-82927380 Msa0381000:intron 15.0%
!! ATCTTTATAACTTTAGATAT+GGG - chr3_1:82928500-82928519 Msa0381000:intron 15.0%
!! AACAACTTAAATATATATCT+GGG - chr3_1:82929196-82929215 Msa0381000:intron 15.0%
!!! TTTTAAAACAAATTTTATGC+AGG - chr3_1:82930469-82930488 Msa0381000:intron 15.0%
!! ATATATAAAATAAAACAGGT+TGG - chr3_1:82930881-82930900 Msa0381000:CDS 15.0%
!!! TGAAGAATTTTAACAAACAT+TGG + chr3_1:82923458-82923477 None:intergenic 20.0%
!! AATGTAAGTTTCTAATAAGT+TGG - chr3_1:82923753-82923772 Msa0381000:CDS 20.0%
!! TAAAAACCATACAAGATTAA+AGG + chr3_1:82923804-82923823 None:intergenic 20.0%
!!! GATAGAATAAACCTTTTTAT+GGG + chr3_1:82924534-82924553 None:intergenic 20.0%
!! CATAAAAAGGTTTATTCTAT+CGG - chr3_1:82924533-82924552 Msa0381000:CDS 20.0%
!! GAAAAAATAATGTTGTTCAT+GGG + chr3_1:82924586-82924605 None:intergenic 20.0%
!! AGAAAAAATAATGTTGTTCA+TGG + chr3_1:82924587-82924606 None:intergenic 20.0%
!! AAATCTCATAGTAATGTAAA+TGG + chr3_1:82924819-82924838 None:intergenic 20.0%
!! TTACATTACTATGAGATTTA+TGG - chr3_1:82924820-82924839 Msa0381000:intron 20.0%
!!! TTTTATTGAATCTTAATCTC+TGG + chr3_1:82925699-82925718 None:intergenic 20.0%
!!! CTTTATTTGTATACAAAAAC+TGG - chr3_1:82925854-82925873 Msa0381000:intron 20.0%
!! AATAAATCTTTCTAATCACT+TGG + chr3_1:82926092-82926111 None:intergenic 20.0%
!! AAATGTGATATTTCCATAAT+TGG - chr3_1:82926387-82926406 Msa0381000:intron 20.0%
!! ATAATTTATATGTTCAGCTT+TGG - chr3_1:82926541-82926560 Msa0381000:intron 20.0%
!!! TTCTATTTTATTATTCTGCT+TGG + chr3_1:82926674-82926693 None:intergenic 20.0%
!! TGTAAATTCTAACAATAAAG+GGG + chr3_1:82926846-82926865 None:intergenic 20.0%
!! GTGTAAATTCTAACAATAAA+GGG + chr3_1:82926847-82926866 None:intergenic 20.0%
!! AGTGTAAATTCTAACAATAA+AGG + chr3_1:82926848-82926867 None:intergenic 20.0%
!! ACACTTTCAATAAAAGAATT+AGG - chr3_1:82926863-82926882 Msa0381000:intron 20.0%
!!! AGACCAAAAATTAAGATTTT+GGG + chr3_1:82927073-82927092 None:intergenic 20.0%
!!! AAGACCAAAAATTAAGATTT+TGG + chr3_1:82927074-82927093 None:intergenic 20.0%
!! TTAACATGTCAAATAATGTA+TGG + chr3_1:82927233-82927252 None:intergenic 20.0%
!! TTATGTGCATAGTTAAATTA+TGG - chr3_1:82927314-82927333 Msa0381000:intron 20.0%
!! GTATAAAGGAAAAATTTGTA+AGG - chr3_1:82927336-82927355 Msa0381000:intron 20.0%
!!! TTTTTAGTAAAGTAGCATTA+TGG + chr3_1:82927426-82927445 None:intergenic 20.0%
!! AGTAAATTTCTACAAAAGTA+TGG - chr3_1:82928354-82928373 Msa0381000:intron 20.0%
!! TAAATCTGTTAACATATGAA+AGG + chr3_1:82928400-82928419 None:intergenic 20.0%
!! GATCTTTATAACTTTAGATA+TGG - chr3_1:82928499-82928518 Msa0381000:intron 20.0%
!!! AATTTAAAGTATTAGTTGAG+TGG + chr3_1:82929100-82929119 None:intergenic 20.0%
!! GAACAACTTAAATATATATC+TGG - chr3_1:82929195-82929214 Msa0381000:intron 20.0%
!!! ATTAGAAACTTTTGTATTTG+AGG + chr3_1:82929610-82929629 None:intergenic 20.0%
!! TCAAATACAAAAGTTTCTAA+TGG - chr3_1:82929609-82929628 Msa0381000:intron 20.0%
!! CAAATACAAAAGTTTCTAAT+GGG - chr3_1:82929610-82929629 Msa0381000:intron 20.0%
!! ATTAAAGTTAAAGGAAATGT+AGG + chr3_1:82930847-82930866 None:intergenic 20.0%
!! CAACTAAACATTAAAGTTAA+AGG + chr3_1:82930856-82930875 None:intergenic 20.0%
!! GAACTATAAACACAGTTTTT+GGG + chr3_1:82922752-82922771 None:intergenic 25.0%
!! AGAACTATAAACACAGTTTT+TGG + chr3_1:82922753-82922772 None:intergenic 25.0%
! AGACAATTACAACAACAATA+AGG - chr3_1:82922839-82922858 Msa0381000:three_prime_UTR 25.0%
! GACAATTACAACAACAATAA+GGG - chr3_1:82922840-82922859 Msa0381000:three_prime_UTR 25.0%
!!! TTGTTGTTGTTTTTCTCTTA+GGG + chr3_1:82922925-82922944 None:intergenic 25.0%
!!! TTTGTTGTTGTTTTTCTCTT+AGG + chr3_1:82922926-82922945 None:intergenic 25.0%
! TTGGAAATATTTGTTCACAT+TGG - chr3_1:82923503-82923522 Msa0381000:CDS 25.0%
!! TGTTTTCCTTTAATCTTGTA+TGG - chr3_1:82923795-82923814 Msa0381000:CDS 25.0%
!!! AATCTTGTATGGTTTTTAAG+TGG - chr3_1:82923806-82923825 Msa0381000:CDS 25.0%
!! CGATAGAATAAACCTTTTTA+TGG + chr3_1:82924535-82924554 None:intergenic 25.0%
! TTGTGTAACTATGTTTAATC+TGG - chr3_1:82924710-82924729 Msa0381000:intron 25.0%
! AATACAATAAACTAGATCGA+TGG + chr3_1:82924859-82924878 None:intergenic 25.0%
! GTATTTGTGTATTTGCATTA+TGG - chr3_1:82924874-82924893 Msa0381000:intron 25.0%
! AATAATTCTTCTTAGAAGCT+AGG + chr3_1:82925405-82925424 None:intergenic 25.0%
!!! AAATGTTTTTGGGTCTATTA+TGG + chr3_1:82925552-82925571 None:intergenic 25.0%
!! ATGTTGCTTCCAAATATATT+TGG - chr3_1:82925628-82925647 Msa0381000:CDS 25.0%
!! TGTTAAAATCACCTTTTTCT+CGG - chr3_1:82925734-82925753 Msa0381000:intron 25.0%
! AAAGAAACAAAATAAAGCAG+CGG + chr3_1:82925964-82925983 None:intergenic 25.0%
! AAAAAGATCATGTTACTGTA+TGG - chr3_1:82926034-82926053 Msa0381000:intron 25.0%
! ATAAATAAGAAACGTAAGGA+AGG + chr3_1:82926217-82926236 None:intergenic 25.0%
! GTGAATAAATAAGAAACGTA+AGG + chr3_1:82926221-82926240 None:intergenic 25.0%
!! TCTTATTTATTCACTCTTTC+AGG - chr3_1:82926227-82926246 Msa0381000:intron 25.0%
!! ATTTACACTTTGGAAATTAC+TGG + chr3_1:82926371-82926390 None:intergenic 25.0%
! GAAATATCACATTTACACTT+TGG + chr3_1:82926381-82926400 None:intergenic 25.0%
!! AGAAAATGATTAGCCAATTA+TGG + chr3_1:82926403-82926422 None:intergenic 25.0%
! ACTTATGCATAATTACTTGA+TGG - chr3_1:82926592-82926611 Msa0381000:intron 25.0%
! CTTATGCATAATTACTTGAT+GGG - chr3_1:82926593-82926612 Msa0381000:intron 25.0%
!!! AAATGAAAGTATTGGTATGT+TGG + chr3_1:82926626-82926645 None:intergenic 25.0%
! TACCAATACTTTCATTTGTT+TGG - chr3_1:82926629-82926648 Msa0381000:intron 25.0%
! ACCAATACTTTCATTTGTTT+GGG - chr3_1:82926630-82926649 Msa0381000:intron 25.0%
!! ATGCCCAAAATCTTAATTTT+TGG - chr3_1:82927067-82927086 Msa0381000:intron 25.0%
! TTAGATGCTATGTTATTCAA+AGG + chr3_1:82927115-82927134 None:intergenic 25.0%
! TTTACTAAAAACTGATCTTC+TGG - chr3_1:82927435-82927454 Msa0381000:intron 25.0%
! TAGTATGCTGCATAAATTAA+TGG + chr3_1:82927627-82927646 None:intergenic 25.0%
! TCAAAGAATTTCATGAATCA+AGG + chr3_1:82928142-82928161 None:intergenic 25.0%
!!! GTCATCTATTTTTGTGATAT+AGG - chr3_1:82928183-82928202 Msa0381000:intron 25.0%
!!! TATTTTTGTGATATAGGTGA+TGG - chr3_1:82928189-82928208 Msa0381000:intron 25.0%
! TATTTCTTACCATTGAAACT+TGG - chr3_1:82928304-82928323 Msa0381000:intron 25.0%
! ATTTCTTACCATTGAAACTT+GGG - chr3_1:82928305-82928324 Msa0381000:intron 25.0%
! GCTACACTTATTATGATTAT+TGG - chr3_1:82928989-82929008 Msa0381000:intron 25.0%
! TTTAAATTAAAGGTGGAATC+AGG - chr3_1:82929065-82929084 Msa0381000:intron 25.0%
! AGTCAAAAATCAGTCAAATT+AGG - chr3_1:82929322-82929341 Msa0381000:intron 25.0%
! GTCAAAAATCAGTCAAATTA+GGG - chr3_1:82929323-82929342 Msa0381000:intron 25.0%
!! GTCATTCAAAGAATTTTAGA+AGG - chr3_1:82929417-82929436 Msa0381000:intron 25.0%
!! TATACTAATTGATTCTACGT+CGG - chr3_1:82929581-82929600 Msa0381000:intron 25.0%
! TCATTATTGTCCAAAATACT+TGG + chr3_1:82929720-82929739 None:intergenic 25.0%
! TGACGAAATGAATGAAAAAT+CGG - chr3_1:82929857-82929876 Msa0381000:intron 25.0%
! TATTGAACATAATCAACATC+AGG - chr3_1:82930220-82930239 Msa0381000:CDS 25.0%
! TAGTAAGAAATGTATGTTGA+TGG + chr3_1:82930409-82930428 None:intergenic 25.0%
! TCTTTCGTATAAGATAATGT+TGG + chr3_1:82930739-82930758 None:intergenic 25.0%
! AAGAGTTTAATGTCTTGTAA+AGG - chr3_1:82930755-82930774 Msa0381000:CDS 25.0%
!! AGTTGAGAAGCATTTGTATA+CGG - chr3_1:82922717-82922736 Msa0381000:three_prime_UTR 30.0%
!!! ATAAACACAGTTTTTGGGAT+GGG + chr3_1:82922747-82922766 None:intergenic 30.0%
!! TATAAACACAGTTTTTGGGA+TGG + chr3_1:82922748-82922767 None:intergenic 30.0%
AGAGAAAAACAACAACAAAC+TGG - chr3_1:82922927-82922946 Msa0381000:three_prime_UTR 30.0%
!! AACAACTTTCTGAGATTCAA+GGG + chr3_1:82923090-82923109 None:intergenic 30.0%
! AGTTGAAACCCAAAGATTTT+TGG - chr3_1:82923144-82923163 Msa0381000:three_prime_UTR 30.0%
TAAAATTCTTCATCGATGCA+TGG - chr3_1:82923466-82923485 Msa0381000:exon 30.0%
!! TGTTGTTGTTGTTGTTTGTT+TGG - chr3_1:82923560-82923579 Msa0381000:CDS 30.0%
TGTTTGGATTGTATTTGTAG+TGG - chr3_1:82923576-82923595 Msa0381000:CDS 30.0%
!!! ATTGTTGCTGGTGTTATTTT+TGG - chr3_1:82923688-82923707 Msa0381000:CDS 30.0%
ACAATATCATGAAAACACGA+CGG + chr3_1:82923729-82923748 None:intergenic 30.0%
! TTTAAGTGGAATTTGTTTGC+AGG - chr3_1:82923820-82923839 Msa0381000:CDS 30.0%
ACTGTCCACAAACTATAAAA+GGG + chr3_1:82923922-82923941 None:intergenic 30.0%
AAGTAATAGGGCAACTATAT+CGG + chr3_1:82924155-82924174 None:intergenic 30.0%
! ACCATCTAGAATATATGTTG+TGG - chr3_1:82924299-82924318 Msa0381000:CDS 30.0%
TCCACAACATATATTCTAGA+TGG + chr3_1:82924303-82924322 None:intergenic 30.0%
TATATGTTGTGGATTTCGAA+TGG - chr3_1:82924310-82924329 Msa0381000:CDS 30.0%
TTTCTGCAATGTTTATCTGA+TGG - chr3_1:82924459-82924478 Msa0381000:CDS 30.0%
!!! ATCTGATGGATTTTTTTAGC+TGG - chr3_1:82924473-82924492 Msa0381000:CDS 30.0%
ATAATGTTGTTCATGGGAAA+TGG + chr3_1:82924580-82924599 None:intergenic 30.0%
AGAGAACAATCATCTGAAAA+AGG + chr3_1:82924611-82924630 None:intergenic 30.0%
! ATTGCCTCATTTTGTATTCT+CGG - chr3_1:82925141-82925160 Msa0381000:CDS 30.0%
GCACATATATCAAACAACTT+TGG + chr3_1:82925232-82925251 None:intergenic 30.0%
! TGCATTTTCATGACTGTATA+TGG + chr3_1:82925254-82925273 None:intergenic 30.0%
! GTGAGAACTTTTTACTATTG+TGG - chr3_1:82925292-82925311 Msa0381000:CDS 30.0%
GGATGCCAAAAACAAAATAA+AGG + chr3_1:82925368-82925387 None:intergenic 30.0%
AGCTAGGTTTATTGAAACTA+AGG + chr3_1:82925389-82925408 None:intergenic 30.0%
! CTTCCAAAGGAAATGTTTTT+GGG + chr3_1:82925562-82925581 None:intergenic 30.0%
! TCTTCCAAAGGAAATGTTTT+TGG + chr3_1:82925563-82925582 None:intergenic 30.0%
TAAAAGATAGCTTCTTCCAA+AGG + chr3_1:82925575-82925594 None:intergenic 30.0%
! TTAATCTATCGACTATCATG+TGG - chr3_1:82925603-82925622 Msa0381000:CDS 30.0%
! TAATCTATCGACTATCATGT+GGG - chr3_1:82925604-82925623 Msa0381000:CDS 30.0%
GCTAAATTATCATGTAACCA+AGG + chr3_1:82926276-82926295 None:intergenic 30.0%
! TGCAGTAACATCTCATTTTA+TGG - chr3_1:82926296-82926315 Msa0381000:intron 30.0%
! TGAGTTTTTGTACTGTCTTT+TGG - chr3_1:82926432-82926451 Msa0381000:CDS 30.0%
! ACCCAAACAAATGAAAGTAT+TGG + chr3_1:82926634-82926653 None:intergenic 30.0%
AAGCAAGCAAATCAAAATTG+TGG + chr3_1:82926768-82926787 None:intergenic 30.0%
ATATTACTTCGCCAACATTT+GGG - chr3_1:82926952-82926971 Msa0381000:intron 30.0%
CTGACTGCTTCTTTATTATA+TGG - chr3_1:82927040-82927059 Msa0381000:intron 30.0%
ATGCACAGAAGAAAATTATC+AGG + chr3_1:82927153-82927172 None:intergenic 30.0%
TATGGACATGACAGAAAAAA+TGG + chr3_1:82927215-82927234 None:intergenic 30.0%
TGAACAACTCACTTTCAAAA+AGG + chr3_1:82927482-82927501 None:intergenic 30.0%
AATTAGAAGCTTCTCATATC+TGG + chr3_1:82927601-82927620 None:intergenic 30.0%
TATGCTGCATAAATTAATGG+TGG + chr3_1:82927624-82927643 None:intergenic 30.0%
TCAACAATTCATTTCCAAAC+TGG - chr3_1:82927738-82927757 Msa0381000:intron 30.0%
! TTCTTTCTTATTTAACGTCC+AGG + chr3_1:82927882-82927901 None:intergenic 30.0%
AAAGAATAGCCACGAATAAA+CGG - chr3_1:82927896-82927915 Msa0381000:intron 30.0%
AAATGATGCAATTGTGTCAA+TGG - chr3_1:82928219-82928238 Msa0381000:intron 30.0%
CATAAAAACCCAAGTTTCAA+TGG + chr3_1:82928316-82928335 None:intergenic 30.0%
TAACTTTAGATATGGGAATG+AGG - chr3_1:82928507-82928526 Msa0381000:intron 30.0%
GAAGATGTTAAGAATGAGAT+TGG - chr3_1:82928648-82928667 Msa0381000:CDS 30.0%
AGAATGAGATTGGTAAAGTT+TGG - chr3_1:82928658-82928677 Msa0381000:intron 30.0%
GAATGAGATTGGTAAAGTTT+GGG - chr3_1:82928659-82928678 Msa0381000:intron 30.0%
TACAGTATCATTAAGTTTCC+AGG - chr3_1:82928828-82928847 Msa0381000:intron 30.0%
GAAGAAATGTTTCCTTCTTA+TGG + chr3_1:82928858-82928877 None:intergenic 30.0%
AAGAAGGAAACATTTCTTCA+AGG - chr3_1:82928859-82928878 Msa0381000:intron 30.0%
GGAATTTCAATATATCAAGC+AGG - chr3_1:82928890-82928909 Msa0381000:intron 30.0%
AATATATCAAGCAGGATTGA+GGG - chr3_1:82928898-82928917 Msa0381000:intron 30.0%
TATTGGCAAAAAACTTGATC+TGG - chr3_1:82929006-82929025 Msa0381000:intron 30.0%
ATCTGGTGAAATTCTTTAGA+GGG - chr3_1:82929023-82929042 Msa0381000:intron 30.0%
TGTTCCGCTGTTTAAATTAA+AGG - chr3_1:82929055-82929074 Msa0381000:intron 30.0%
! TCCACCTTTAATTTAAACAG+CGG + chr3_1:82929062-82929081 None:intergenic 30.0%
TTTGAAGGAGACTATTAACA+GGG - chr3_1:82929230-82929249 Msa0381000:intron 30.0%
! TTACGGTAAAGGGTTTTTAT+CGG - chr3_1:82929359-82929378 Msa0381000:intron 30.0%
GACGAAATGAATGAAAAATC+GGG - chr3_1:82929858-82929877 Msa0381000:intron 30.0%
ACGAAATGAATGAAAAATCG+GGG - chr3_1:82929859-82929878 Msa0381000:intron 30.0%
!!! ATTTTGTATTAGAGGCGTTT+TGG + chr3_1:82929917-82929936 None:intergenic 30.0%
AAAACGCCTCTAATACAAAA+TGG - chr3_1:82929916-82929935 Msa0381000:intron 30.0%
AAACGCCTCTAATACAAAAT+GGG - chr3_1:82929917-82929936 Msa0381000:intron 30.0%
AAAGAATTGATACATGGTCT+TGG - chr3_1:82930056-82930075 Msa0381000:intron 30.0%
! TGGATTGAGTGGTTTTTAAT+AGG - chr3_1:82930382-82930401 Msa0381000:intron 30.0%
! ACTTTCATGTGTTCTGTTTT+GGG - chr3_1:82930617-82930636 Msa0381000:intron 30.0%
TTGTAAAGGTTACTTCATAC+CGG - chr3_1:82930769-82930788 Msa0381000:CDS 30.0%
CAAAACTAGATAACCAAAAC+TGG + chr3_1:82930798-82930817 None:intergenic 30.0%
!!! CAGTTTTGGTTATCTAGTTT+TGG - chr3_1:82930796-82930815 Msa0381000:CDS 30.0%
TATGCTCCCAGATTAAAATT+GGG - chr3_1:82930915-82930934 Msa0381000:CDS 30.0%
! AAATGCTTCTCAACTGACTT+AGG + chr3_1:82922712-82922731 None:intergenic 35.0%
CAGAAAATGTCGAATCGTTA+CGG - chr3_1:82922804-82922823 Msa0381000:intron 35.0%
TTAGGAACGAATTTCATCTG+TGG + chr3_1:82922876-82922895 None:intergenic 35.0%
! AAACAACAACAAACTGGTTC+TGG - chr3_1:82922933-82922952 Msa0381000:three_prime_UTR 35.0%
!! CAACAACTTTCTGAGATTCA+AGG + chr3_1:82923091-82923110 None:intergenic 35.0%
CCTTGTGACCAAAAATCTTT+GGG + chr3_1:82923155-82923174 None:intergenic 35.0%
ACCTTGTGACCAAAAATCTT+TGG + chr3_1:82923156-82923175 None:intergenic 35.0%
TCAACAGCTTTCTGCAATTT+AGG - chr3_1:82923626-82923645 Msa0381000:CDS 35.0%
CTCAGTTCAAAAGATCATGA+AGG - chr3_1:82923882-82923901 Msa0381000:CDS 35.0%
AGTTCAAAAGATCATGAAGG+TGG - chr3_1:82923885-82923904 Msa0381000:CDS 35.0%
GTTCAAAAGATCATGAAGGT+GGG - chr3_1:82923886-82923905 Msa0381000:CDS 35.0%
CACTGTCCACAAACTATAAA+AGG + chr3_1:82923923-82923942 None:intergenic 35.0%
AATCGCGTAAAAATCACGTA+TGG + chr3_1:82923967-82923986 None:intergenic 35.0%
TGAAAGTCAGGGTAAAGAAA+TGG - chr3_1:82924391-82924410 Msa0381000:CDS 35.0%
TGATAACACTGCCCATAAAA+AGG - chr3_1:82924520-82924539 Msa0381000:CDS 35.0%
! CAGATGATTGTTCTCTTTTC+TGG - chr3_1:82924615-82924634 Msa0381000:CDS 35.0%
! CTATGTTTAATCTGGTGTCA+TGG - chr3_1:82924718-82924737 Msa0381000:intron 35.0%
ATCAGCTGTACTCTTTATAG+CGG - chr3_1:82924928-82924947 Msa0381000:intron 35.0%
CATGTGAGCAATGTTATTGA+TGG + chr3_1:82924984-82925003 None:intergenic 35.0%
ATAACATTGCTCACATGCAA+TGG - chr3_1:82924987-82925006 Msa0381000:CDS 35.0%
AACACCGAGAATACAAAATG+AGG + chr3_1:82925148-82925167 None:intergenic 35.0%
! ATTGCATGTAGTTCTTTTGC+AGG - chr3_1:82925186-82925205 Msa0381000:CDS 35.0%
TCCTACAAGCAACAGAAAAA+AGG - chr3_1:82925501-82925520 Msa0381000:intron 35.0%
!!! ACCTTTTTTCTGTTGCTTGT+AGG + chr3_1:82925505-82925524 None:intergenic 35.0%
ATTTCTGTTACTCCATTGAC+AGG - chr3_1:82925525-82925544 Msa0381000:intron 35.0%
AGACCCAAAAACATTTCCTT+TGG - chr3_1:82925556-82925575 Msa0381000:intron 35.0%
!! GAAAACAAGTACCGAGAAAA+AGG + chr3_1:82925748-82925767 None:intergenic 35.0%
CTTTCTTAGTCATTGTCCAA+TGG - chr3_1:82925894-82925913 Msa0381000:intron 35.0%
CACATTTGTATGTTTGTGAC+CGG - chr3_1:82926707-82926726 Msa0381000:intron 35.0%
AAAGGGAGGGAAATGAAAAT+AGG - chr3_1:82926912-82926931 Msa0381000:intron 35.0%
AGGGAAATGAAAATAGGAAC+TGG - chr3_1:82926918-82926937 Msa0381000:intron 35.0%
GGGAAATGAAAATAGGAACT+GGG - chr3_1:82926919-82926938 Msa0381000:intron 35.0%
GGAAATGAAAATAGGAACTG+GGG - chr3_1:82926920-82926939 Msa0381000:intron 35.0%
CATATTACTTCGCCAACATT+TGG - chr3_1:82926951-82926970 Msa0381000:intron 35.0%
TATTACTTCGCCAACATTTG+GGG - chr3_1:82926953-82926972 Msa0381000:intron 35.0%
CAGACACATTATTTGTCAAC+AGG + chr3_1:82927189-82927208 None:intergenic 35.0%
!!! TTCATTTTGGGGTTATGTAC+AGG - chr3_1:82927372-82927391 Msa0381000:intron 35.0%
ACTAAAAACTGATCTTCTGG+AGG - chr3_1:82927438-82927457 Msa0381000:intron 35.0%
AGTGAGTTGTTCAATCTTCT+TGG - chr3_1:82927489-82927508 Msa0381000:intron 35.0%
GTGAGTTGTTCAATCTTCTT+GGG - chr3_1:82927490-82927509 Msa0381000:intron 35.0%
TGAGTTGTTCAATCTTCTTG+GGG - chr3_1:82927491-82927510 Msa0381000:intron 35.0%
TTGAGGTAACATTAAGGAGA+AGG + chr3_1:82927798-82927817 None:intergenic 35.0%
AGATGTAATGTAGTTAAGCC+TGG - chr3_1:82927861-82927880 Msa0381000:intron 35.0%
! AATCTGATGGTGTGGAAATA+GGG + chr3_1:82927973-82927992 None:intergenic 35.0%
TGTTGTCTATGACAATCTGA+TGG + chr3_1:82927986-82928005 None:intergenic 35.0%
TTTGAAGAAGAATTTCGCTG+TGG - chr3_1:82928037-82928056 Msa0381000:intron 35.0%
AGAAATACCTCATCTCAACA+GGG + chr3_1:82928291-82928310 None:intergenic 35.0%
AAGAAATACCTCATCTCAAC+AGG + chr3_1:82928292-82928311 None:intergenic 35.0%
TGGCTAAGCTGACAAAAAAT+TGG - chr3_1:82928374-82928393 Msa0381000:intron 35.0%
GTTTGCCAGCAAAAATGATA+TGG + chr3_1:82928594-82928613 None:intergenic 35.0%
TGACACAGTCTCTAATATTG+TGG - chr3_1:82928618-82928637 Msa0381000:CDS 35.0%
CATCGTCACTTAAATAGCAA+AGG + chr3_1:82928699-82928718 None:intergenic 35.0%
TTTCCAGGAAATCCATAAGA+AGG - chr3_1:82928843-82928862 Msa0381000:intron 35.0%
TTTCCTTCTTATGGATTTCC+TGG + chr3_1:82928849-82928868 None:intergenic 35.0%
!! CATTTCTTCAAGGTGTTGAA+AGG - chr3_1:82928869-82928888 Msa0381000:intron 35.0%
CAATATATCAAGCAGGATTG+AGG - chr3_1:82928897-82928916 Msa0381000:intron 35.0%
ATTGAGGGATTACAGCATAA+TGG - chr3_1:82928913-82928932 Msa0381000:intron 35.0%
GATCTGGTGAAATTCTTTAG+AGG - chr3_1:82929022-82929041 Msa0381000:intron 35.0%
TCCGCTGTTTAAATTAAAGG+TGG - chr3_1:82929058-82929077 Msa0381000:intron 35.0%
! TAATCTAGTTCCTCTGATTC+AGG - chr3_1:82929153-82929172 Msa0381000:intron 35.0%
! AATCTAGTTCCTCTGATTCA+GGG - chr3_1:82929154-82929173 Msa0381000:intron 35.0%
!!! TGGGATTTTGAGTTCTTTGA+AGG - chr3_1:82929215-82929234 Msa0381000:intron 35.0%
! CTTTGAAGGAGACTATTAAC+AGG - chr3_1:82929229-82929248 Msa0381000:intron 35.0%
ACAGAGATCTTTGCAGAATA+TGG + chr3_1:82929258-82929277 None:intergenic 35.0%
TATTCCCTGATTACGGTAAA+GGG - chr3_1:82929349-82929368 Msa0381000:intron 35.0%
AAAACCCTTTACCGTAATCA+GGG + chr3_1:82929356-82929375 None:intergenic 35.0%
AAAAACCCTTTACCGTAATC+AGG + chr3_1:82929357-82929376 None:intergenic 35.0%
ATTCTTTGAATGACCTCTTC+TGG + chr3_1:82929411-82929430 None:intergenic 35.0%
! TCATAATGATCTGAAGTGCT+TGG - chr3_1:82929446-82929465 Msa0381000:intron 35.0%
CTTGGATACTTCATTAGAGA+CGG - chr3_1:82929464-82929483 Msa0381000:intron 35.0%
GGTGTACTAATTGATGTTAG+CGG - chr3_1:82929540-82929559 Msa0381000:intron 35.0%
GTGTACTAATTGATGTTAGC+GGG - chr3_1:82929541-82929560 Msa0381000:intron 35.0%
! TTCCTCACAAATTTTCCAAG+TGG + chr3_1:82929675-82929694 None:intergenic 35.0%
TTGTCCAAAATACTTGGATC+AGG + chr3_1:82929714-82929733 None:intergenic 35.0%
!! TGATGACTCTTTTGATGACT+TGG - chr3_1:82929788-82929807 Msa0381000:intron 35.0%
!! GATGACTCTTTTGATGACTT+GGG - chr3_1:82929789-82929808 Msa0381000:intron 35.0%
ATGAAAAATCGGGGAAATCA+AGG - chr3_1:82929868-82929887 Msa0381000:intron 35.0%
TGAAAAATCGGGGAAATCAA+GGG - chr3_1:82929869-82929888 Msa0381000:intron 35.0%
AACGCCTCTAATACAAAATG+GGG - chr3_1:82929918-82929937 Msa0381000:intron 35.0%
! AATTACAGCTACAAAGTGTC+TGG - chr3_1:82929981-82930000 Msa0381000:CDS 35.0%
GCTCAGAAAGAATTGATACA+TGG - chr3_1:82930050-82930069 Msa0381000:intron 35.0%
! ATCTGATGATGTTTCTGAAG+TGG - chr3_1:82930250-82930269 Msa0381000:CDS 35.0%
ATCAAGGTCCAAATAACAGA+GGG - chr3_1:82930282-82930301 Msa0381000:intron 35.0%
TAGAAACAACCATTACAGGA+AGG - chr3_1:82930334-82930353 Msa0381000:intron 35.0%
GAAACTAGCCAGAGTTATAT+GGG + chr3_1:82930439-82930458 None:intergenic 35.0%
TGAAACTAGCCAGAGTTATA+TGG + chr3_1:82930440-82930459 None:intergenic 35.0%
ATCAATCAGACGTATAGACA+TGG - chr3_1:82930499-82930518 Msa0381000:intron 35.0%
TTGACTGGTAAAGTCTACTA+TGG - chr3_1:82930583-82930602 Msa0381000:intron 35.0%
AACAGAACACATGAAAGTCT+CGG + chr3_1:82930615-82930634 None:intergenic 35.0%
! GACTTTCATGTGTTCTGTTT+TGG - chr3_1:82930616-82930635 Msa0381000:intron 35.0%
AGATAACCAAAACTGGATTC+CGG + chr3_1:82930791-82930810 None:intergenic 35.0%
CTATGCTCCCAGATTAAAAT+TGG - chr3_1:82930914-82930933 Msa0381000:CDS 35.0%
!! ACTACGCCCAATTTTAATCT+GGG + chr3_1:82930924-82930943 None:intergenic 35.0%
!! AACTACGCCCAATTTTAATC+TGG + chr3_1:82930925-82930944 None:intergenic 35.0%
TCAACAGTCAAAATGAGTTG+AGG + chr3_1:82930957-82930976 None:intergenic 35.0%
TACCCTACTTAGTGGAATAA+GGG - chr3_1:82931065-82931084 Msa0381000:five_prime_UTR 35.0%
TTCCCTTATTCCACTAAGTA+GGG + chr3_1:82931070-82931089 None:intergenic 35.0%
ATTCCCTTATTCCACTAAGT+AGG + chr3_1:82931071-82931090 None:intergenic 35.0%
! AAGGTTGGGGTCGAATTTTT+AGG + chr3_1:82922894-82922913 None:intergenic 40.0%
TTAGGGAAGTTGACAAGGTT+GGG + chr3_1:82922908-82922927 None:intergenic 40.0%
TTCTCTTAGGGAAGTTGACA+AGG + chr3_1:82922913-82922932 None:intergenic 40.0%
AGCAATAGCAATACTTCGTC+AGG - chr3_1:82922963-82922982 Msa0381000:three_prime_UTR 40.0%
ATAGCAATACTTCGTCAGGT+AGG - chr3_1:82922967-82922986 Msa0381000:three_prime_UTR 40.0%
TAGCAATACTTCGTCAGGTA+GGG - chr3_1:82922968-82922987 Msa0381000:three_prime_UTR 40.0%
!!! CCCAAAGATTTTTGGTCACA+AGG - chr3_1:82923152-82923171 Msa0381000:three_prime_UTR 40.0%
GCTGTTGAGAAACTCATGTA+GGG + chr3_1:82923614-82923633 None:intergenic 40.0%
AGCTGTTGAGAAACTCATGT+AGG + chr3_1:82923615-82923634 None:intergenic 40.0%
TTTGAACTGAGTGTATCAGC+TGG + chr3_1:82923873-82923892 None:intergenic 40.0%
CACAAACTATAAAAGGGCGA+AGG + chr3_1:82923916-82923935 None:intergenic 40.0%
! CTTCGCCCTTTTATAGTTTG+TGG - chr3_1:82923914-82923933 Msa0381000:CDS 40.0%
! TTTTACGCGATTCGTCTACA+TGG - chr3_1:82923975-82923994 Msa0381000:CDS 40.0%
ATATACGTTTCATGCACACG+TGG - chr3_1:82924041-82924060 Msa0381000:CDS 40.0%
TATACGTTTCATGCACACGT+GGG - chr3_1:82924042-82924061 Msa0381000:CDS 40.0%
CATGATCCTTCTCTTCTTGT+TGG - chr3_1:82924214-82924233 Msa0381000:CDS 40.0%
TCTTACTCACTCACTCTTTC+TGG - chr3_1:82924259-82924278 Msa0381000:CDS 40.0%
AAATTTGACGACACAGCTGA+CGG + chr3_1:82924442-82924461 None:intergenic 40.0%
CAATCACGGATGGAAGATTA+TGG + chr3_1:82924502-82924521 None:intergenic 40.0%
ATGGGCAGTGTTATCAATCA+CGG + chr3_1:82924516-82924535 None:intergenic 40.0%
ATGTTGTTCATGGGAAATGG+AGG + chr3_1:82924577-82924596 None:intergenic 40.0%
TGCAGCCAAATGCAAAAGTA+TGG + chr3_1:82924903-82924922 None:intergenic 40.0%
! GCTATAAAGAGTACAGCTGA+TGG + chr3_1:82924929-82924948 None:intergenic 40.0%
TCAGCTGTACTCTTTATAGC+GGG - chr3_1:82924929-82924948 Msa0381000:intron 40.0%
!!! GTACTCTTTATAGCGGGTTT+TGG - chr3_1:82924935-82924954 Msa0381000:intron 40.0%
TGCAGAATTGACAAGATTGC+TGG - chr3_1:82925270-82925289 Msa0381000:CDS 40.0%
! AGGATTTTTCTTAACGCACG+CGG + chr3_1:82925348-82925367 None:intergenic 40.0%
GAGCATGGGAAATTGTTCAA+AGG + chr3_1:82925446-82925465 None:intergenic 40.0%
GTATCGTCTAATCAGAGCAT+GGG + chr3_1:82925460-82925479 None:intergenic 40.0%
TGTATCGTCTAATCAGAGCA+TGG + chr3_1:82925461-82925480 None:intergenic 40.0%
GTCTATTATGGACCTGTCAA+TGG + chr3_1:82925540-82925559 None:intergenic 40.0%
!! CGGTACTTGTTTTCTCTTTG+AGG - chr3_1:82925754-82925773 Msa0381000:intron 40.0%
ATAAAGCAGCGGTGCAATTT+GGG + chr3_1:82925953-82925972 None:intergenic 40.0%
AATAAAGCAGCGGTGCAATT+TGG + chr3_1:82925954-82925973 None:intergenic 40.0%
TCTCTATGCACACTTTGTTG+TGG - chr3_1:82926157-82926176 Msa0381000:intron 40.0%
AGGCAGGTTAAATATGTGGA+GGG + chr3_1:82926197-82926216 None:intergenic 40.0%
AAGGCAGGTTAAATATGTGG+AGG + chr3_1:82926198-82926217 None:intergenic 40.0%
AGGAAGGCAGGTTAAATATG+TGG + chr3_1:82926201-82926220 None:intergenic 40.0%
ATAAGAAACGTAAGGAAGGC+AGG + chr3_1:82926213-82926232 None:intergenic 40.0%
ACGATGCAGTTCATCATTAG+AGG - chr3_1:82926341-82926360 Msa0381000:intron 40.0%
TGGTGTTCTACAAACTGCTT+TGG - chr3_1:82926561-82926580 Msa0381000:intron 40.0%
ATTTCCCTCCCTTTCTTTGA+GGG + chr3_1:82926906-82926925 None:intergenic 40.0%
ATTACTTCGCCAACATTTGG+GGG - chr3_1:82926954-82926973 Msa0381000:intron 40.0%
!! GTACAGGTCTTATTTGCTTC+TGG - chr3_1:82927388-82927407 Msa0381000:intron 40.0%
ATACAGAATGTGAAGCCTCT+AGG + chr3_1:82927537-82927556 None:intergenic 40.0%
! TTGTGATTTTCTACCTCCAG+AGG - chr3_1:82927565-82927584 Msa0381000:CDS 40.0%
! ATCTGGTTTATCACTTCCTC+TGG + chr3_1:82927584-82927603 None:intergenic 40.0%
GATTACTGTGAGTACCAGTT+TGG + chr3_1:82927755-82927774 None:intergenic 40.0%
AACTGGTACTCACAGTAATC+CGG - chr3_1:82927755-82927774 Msa0381000:intron 40.0%
CCAGACTTGAGGTAACATTA+AGG + chr3_1:82927804-82927823 None:intergenic 40.0%
CCTTAATGTTACCTCAAGTC+TGG - chr3_1:82927801-82927820 Msa0381000:intron 40.0%
! CAATCTGATGGTGTGGAAAT+AGG + chr3_1:82927974-82927993 None:intergenic 40.0%
! TCTATGACAATCTGATGGTG+TGG + chr3_1:82927981-82928000 None:intergenic 40.0%
AAGAATTTCGCTGTGGCAAA+GGG - chr3_1:82928044-82928063 Msa0381000:intron 40.0%
TACATAGTTTGAACACGTCG+AGG - chr3_1:82928067-82928086 Msa0381000:intron 40.0%
! CGTCGAGGCTATTTAAAACA+CGG - chr3_1:82928082-82928101 Msa0381000:intron 40.0%
GAAATACCTCATCTCAACAG+GGG + chr3_1:82928290-82928309 None:intergenic 40.0%
AATTAGCGAATCATGCAACC+TGG + chr3_1:82928551-82928570 None:intergenic 40.0%
CTAATTCCGTCCATGCAAAA+GGG - chr3_1:82928565-82928584 Msa0381000:intron 40.0%
TAATTCCGTCCATGCAAAAG+GGG - chr3_1:82928566-82928585 Msa0381000:intron 40.0%
!! GGGTTCCATATCATTTTTGC+TGG - chr3_1:82928586-82928605 Msa0381000:CDS 40.0%
TGAGATTGGTAAAGTTTGGG+TGG - chr3_1:82928662-82928681 Msa0381000:intron 40.0%
ATTGGCAGGAAACATCTTTG+TGG + chr3_1:82928752-82928771 None:intergenic 40.0%
GAATATCTGCTCTGATGACT+GGG + chr3_1:82928783-82928802 None:intergenic 40.0%
AGAATATCTGCTCTGATGAC+TGG + chr3_1:82928784-82928803 None:intergenic 40.0%
AGTCATCAGAGCAGATATTC+TGG - chr3_1:82928783-82928802 Msa0381000:intron 40.0%
CTTTACCGTAATCAGGGAAT+AGG + chr3_1:82929350-82929369 None:intergenic 40.0%
CTATTCCCTGATTACGGTAA+AGG - chr3_1:82929348-82929367 Msa0381000:intron 40.0%
AGCGGGAAAGATAAAGGAAA+AGG - chr3_1:82929519-82929538 Msa0381000:intron 40.0%
CTCCACTTGGAAAATTTGTG+AGG - chr3_1:82929670-82929689 Msa0381000:intron 40.0%
TGGAGTAGAAGAAAGTGAAG+TGG - chr3_1:82929830-82929849 Msa0381000:intron 40.0%
! AGAGCCCCATTTTGTATTAG+AGG + chr3_1:82929925-82929944 None:intergenic 40.0%
CTAATACAAAATGGGGCTCT+AGG - chr3_1:82929925-82929944 Msa0381000:intron 40.0%
CCATCTTTGACATAGTACTG+TGG + chr3_1:82929957-82929976 None:intergenic 40.0%
CCACAGTACTATGTCAAAGA+TGG - chr3_1:82929954-82929973 Msa0381000:intron 40.0%
AAGTTGGCAGATTCCTACAA+GGG - chr3_1:82930113-82930132 Msa0381000:intron 40.0%
GGTAACCAATTCCATGTTTC+TGG - chr3_1:82930143-82930162 Msa0381000:CDS 40.0%
CTGTTCCAGAAACATGGAAT+TGG + chr3_1:82930151-82930170 None:intergenic 40.0%
!! TTCCATGTTTCTGGAACAGA+AGG - chr3_1:82930152-82930171 Msa0381000:CDS 40.0%
!! TCCATGTTTCTGGAACAGAA+GGG - chr3_1:82930153-82930172 Msa0381000:CDS 40.0%
!! TGATGATGTTTCTGAAGTGG+AGG - chr3_1:82930253-82930272 Msa0381000:CDS 40.0%
!! GATGATGTTTCTGAAGTGGA+GGG - chr3_1:82930254-82930273 Msa0381000:CDS 40.0%
GATCAAGGTCCAAATAACAG+AGG - chr3_1:82930281-82930300 Msa0381000:intron 40.0%
GAGGTAGAAACAACCATTAC+AGG - chr3_1:82930330-82930349 Msa0381000:intron 40.0%
AGAAATGCTTCTTCATGGCT+TGG + chr3_1:82930361-82930380 None:intergenic 40.0%
TCCAGAGAAATGCTTCTTCA+TGG + chr3_1:82930366-82930385 None:intergenic 40.0%
AAGCATTTCTCTGGATTGAG+TGG - chr3_1:82930371-82930390 Msa0381000:intron 40.0%
AGCCAATACCCATATAACTC+TGG - chr3_1:82930428-82930447 Msa0381000:intron 40.0%
AGCCAGAGTTATATGGGTAT+TGG + chr3_1:82930433-82930452 None:intergenic 40.0%
! AGTCCTTGTTGATTGAGACT+TGG - chr3_1:82930656-82930675 Msa0381000:intron 40.0%
CATCCAAGTCTCAATCAACA+AGG + chr3_1:82930662-82930681 None:intergenic 40.0%
! TTCATACCGGAATCCAGTTT+TGG - chr3_1:82930782-82930801 Msa0381000:CDS 40.0%
AAATTGGGCGTAGTTGACTA+AGG - chr3_1:82930930-82930949 Msa0381000:CDS 40.0%
TGACTGTTGATGCCATTCAA+AGG - chr3_1:82930967-82930986 Msa0381000:CDS 40.0%
TGTTGATGCCATTCAAAGGA+GGG - chr3_1:82930971-82930990 Msa0381000:CDS 40.0%
AATGCTAACCCTCCTTTGAA+TGG + chr3_1:82930982-82931001 None:intergenic 40.0%
! ATTCAAAGGAGGGTTAGCAT+TGG - chr3_1:82930981-82931000 Msa0381000:CDS 40.0%
CTACCCTACTTAGTGGAATA+AGG - chr3_1:82931064-82931083 Msa0381000:five_prime_UTR 40.0%
CTACCCTACTTAGTGGAATA+AGG - chr3_1:82931064-82931083 Msa0381000:five_prime_UTR 40.0%
!! GAGCCTTATTCCACTAAGTA+GGG + chr3_1:82931118-82931137 None:intergenic 40.0%
CTACTTAGTGGAATAAGGCT+CGG - chr3_1:82931117-82931136 Msa0381000:five_prime_UTR 40.0%
ATGTCGAATCGTTACGGTCA+AGG - chr3_1:82922810-82922829 Msa0381000:three_prime_UTR 45.0%
TAGGGAAGTTGACAAGGTTG+GGG + chr3_1:82922907-82922926 None:intergenic 45.0%
CTTAGGGAAGTTGACAAGGT+TGG + chr3_1:82922909-82922928 None:intergenic 45.0%
!! CAACAAACTGGTTCTGGTTC+TGG - chr3_1:82922939-82922958 Msa0381000:three_prime_UTR 45.0%
!! TATCGGTGTCAATGTGTCTG+TGG - chr3_1:82923288-82923307 Msa0381000:three_prime_UTR 45.0%
! CATGGCGTGTGCTATTACAT+TGG - chr3_1:82923484-82923503 Msa0381000:CDS 45.0%
GCTTTCTGCAATTTAGGAGC+AGG - chr3_1:82923632-82923651 Msa0381000:CDS 45.0%
TTCTGCAATTTAGGAGCAGG+TGG - chr3_1:82923635-82923654 Msa0381000:CDS 45.0%
AGGTCTTCCAATAGAGATCC+TGG - chr3_1:82923840-82923859 Msa0381000:CDS 45.0%
ACACAGCCAACAAGAAGAGA+AGG + chr3_1:82924223-82924242 None:intergenic 45.0%
TACTCACTCACTCTTTCTGG+CGG - chr3_1:82924262-82924281 Msa0381000:CDS 45.0%
TGTTGTGGATTTCGAATGGC+AGG - chr3_1:82924314-82924333 Msa0381000:CDS 45.0%
CATGAGAATGCCATCCATCA+TGG + chr3_1:82924340-82924359 None:intergenic 45.0%
!! CATGATGGATGGCATTCTCA+TGG - chr3_1:82924338-82924357 Msa0381000:CDS 45.0%
TCACGGATGGAAGATTATGG+CGG + chr3_1:82924499-82924518 None:intergenic 45.0%
GCAGTGTTATCAATCACGGA+TGG + chr3_1:82924512-82924531 None:intergenic 45.0%
TTCATGGGAAATGGAGGTTG+AGG + chr3_1:82924571-82924590 None:intergenic 45.0%
! GGCTGCCATACTTTTGCATT+TGG - chr3_1:82924895-82924914 Msa0381000:intron 45.0%
!!! TTATAGCGGGTTTTGGCTTG+CGG - chr3_1:82924942-82924961 Msa0381000:CDS 45.0%
ACATTGCTCACATGCAATGG+TGG - chr3_1:82924990-82925009 Msa0381000:CDS 45.0%
! TCTGTTGCTTGTAGGAGATG+TGG + chr3_1:82925497-82925516 None:intergenic 45.0%
! GATCTTGTTATGTGCTGCAC+CGG + chr3_1:82926729-82926748 None:intergenic 45.0%
TTTCCCTCCCTTTCTTTGAG+GGG + chr3_1:82926905-82926924 None:intergenic 45.0%
CATTTCCCTCCCTTTCTTTG+AGG + chr3_1:82926907-82926926 None:intergenic 45.0%
TTACTTCGCCAACATTTGGG+GGG - chr3_1:82926955-82926974 Msa0381000:intron 45.0%
AACCTGGTATTAGAGCCTAG+AGG - chr3_1:82927519-82927538 Msa0381000:CDS 45.0%
TGGTTTATCACTTCCTCTGG+AGG + chr3_1:82927581-82927600 None:intergenic 45.0%
TAGTAGTGTCTCCAGACTTG+AGG + chr3_1:82927815-82927834 None:intergenic 45.0%
TGACAGTTTCTGAGCTTCAC+TGG + chr3_1:82927840-82927859 None:intergenic 45.0%
! CAGTCAATGCCGTTTATTCG+TGG + chr3_1:82927908-82927927 None:intergenic 45.0%
GAAGAATTTCGCTGTGGCAA+AGG - chr3_1:82928043-82928062 Msa0381000:intron 45.0%
GCTAATTCCGTCCATGCAAA+AGG - chr3_1:82928564-82928583 Msa0381000:intron 45.0%
! GATATGGAACCCCTTTTGCA+TGG + chr3_1:82928578-82928597 None:intergenic 45.0%
GATGACTGGGTCTTCAACAT+TGG + chr3_1:82928770-82928789 None:intergenic 45.0%
GAATATCCACCCTGAATCAG+AGG + chr3_1:82929166-82929185 None:intergenic 45.0%
TTCAGGGTGGATATTCGTTG+AGG - chr3_1:82929170-82929189 Msa0381000:intron 45.0%
!! TCTGTCTGCATGGTTTGGTT+CGG + chr3_1:82929282-82929301 None:intergenic 45.0%
CTTCATCTGTCTGCATGGTT+TGG + chr3_1:82929287-82929306 None:intergenic 45.0%
AGCATCTTCATCTGTCTGCA+TGG + chr3_1:82929292-82929311 None:intergenic 45.0%
AGGGACCTATTCCCTGATTA+CGG - chr3_1:82929342-82929361 Msa0381000:intron 45.0%
! GTTTTTATCGGCATGTCTCG+AGG - chr3_1:82929371-82929390 Msa0381000:intron 45.0%
CTATGACCACAATCCAGAAG+AGG - chr3_1:82929395-82929414 Msa0381000:intron 45.0%
GAATGACCTCTTCTGGATTG+TGG + chr3_1:82929404-82929423 None:intergenic 45.0%
GCTGTTAGCGGGAAAGATAA+AGG - chr3_1:82929513-82929532 Msa0381000:intron 45.0%
GATGTTAGCGGGAAAGAGAA+AGG - chr3_1:82929552-82929571 Msa0381000:intron 45.0%
AGCGGGAAAGAGAAAGGAAA+AGG - chr3_1:82929558-82929577 Msa0381000:intron 45.0%
AATGGGAAGAACCTGACAGA+AGG - chr3_1:82929627-82929646 Msa0381000:intron 45.0%
ATGGGAAGAACCTGACAGAA+GGG - chr3_1:82929628-82929647 Msa0381000:intron 45.0%
TTTCCAAGTGGAGCAGATGA+TGG + chr3_1:82929663-82929682 None:intergenic 45.0%
AATACTTGGATCAGGCCTGT+CGG + chr3_1:82929706-82929725 None:intergenic 45.0%
! CAGGCCTGATCCAAGTATTT+TGG - chr3_1:82929707-82929726 Msa0381000:intron 45.0%
AAATCAAGGGAAACAGGGAC+CGG - chr3_1:82929882-82929901 Msa0381000:intron 45.0%
! TTGATACATGGTCTTGGACG+TGG - chr3_1:82930062-82930081 Msa0381000:intron 45.0%
! TGATACATGGTCTTGGACGT+GGG - chr3_1:82930063-82930082 Msa0381000:intron 45.0%
GAAGTTGGCAGATTCCTACA+AGG - chr3_1:82930112-82930131 Msa0381000:intron 45.0%
TCCCTTCTGTTCCAGAAACA+TGG + chr3_1:82930157-82930176 None:intergenic 45.0%
!! TTTCTGGAACAGAAGGGAGA+GGG - chr3_1:82930159-82930178 Msa0381000:CDS 45.0%
GTCCAAATAACAGAGGGAGA+GGG - chr3_1:82930288-82930307 Msa0381000:intron 45.0%
!! GCCATGAAGAAGCATTTCTC+TGG - chr3_1:82930362-82930381 Msa0381000:intron 45.0%
GACATGGTGTATTGCTCTTC+TGG - chr3_1:82930515-82930534 Msa0381000:intron 45.0%
AGCATGGCTCATACATTGAC+TGG - chr3_1:82930568-82930587 Msa0381000:intron 45.0%
! ATCTGGGAGCATAGTTGAGT+CGG + chr3_1:82930908-82930927 None:intergenic 45.0%
CTGTTGATGCCATTCAAAGG+AGG - chr3_1:82930970-82930989 Msa0381000:CDS 45.0%
ATCAGAGCTACCCTACTTAG+TGG - chr3_1:82931057-82931076 Msa0381000:exon 45.0%
ATCAGAGCTACCCTACTTAG+TGG - chr3_1:82931057-82931076 Msa0381000:exon 45.0%
!! CGAGCCTTATTCCACTAAGT+AGG + chr3_1:82931119-82931138 None:intergenic 45.0%
! AAGGCTCGGTTGTTGTTCAT+TGG - chr3_1:82931131-82931150 Msa0381000:five_prime_UTR 45.0%
!! AAACAAAAAATATTTAAAAA+AGG + chr3_1:82924118-82924137 None:intergenic 5.0%
!!! AAATTATTTCTATTTATTTT+TGG - chr3_1:82925115-82925134 Msa0381000:CDS 5.0%
!!! AATTATTTCTATTTATTTTT+GGG - chr3_1:82925116-82925135 Msa0381000:CDS 5.0%
CGAATCGTTACGGTCAAGGT+AGG - chr3_1:82922814-82922833 Msa0381000:three_prime_UTR 50.0%
TTCGTCAGGTAGGGTTCAAC+CGG - chr3_1:82922977-82922996 Msa0381000:three_prime_UTR 50.0%
AAATTGCCATTCACACCCCC+CGG + chr3_1:82922999-82923018 None:intergenic 50.0%
TGGTATGATTTCCCTCACCG+TGG - chr3_1:82923655-82923674 Msa0381000:CDS 50.0%
GGTATGATTTCCCTCACCGT+GGG - chr3_1:82923656-82923675 Msa0381000:CDS 50.0%
GTATGATTTCCCTCACCGTG+GGG - chr3_1:82923657-82923676 Msa0381000:CDS 50.0%
TCGAGCACCAGGATCTCTAT+TGG + chr3_1:82923850-82923869 None:intergenic 50.0%
TTTCGAATGGCAGGCCATGA+TGG - chr3_1:82924323-82924342 Msa0381000:CDS 50.0%
ATGGCATTCTCATGGAGCCA+TGG - chr3_1:82924346-82924365 Msa0381000:CDS 50.0%
ATTCTCATGGAGCCATGGCA+TGG - chr3_1:82924351-82924370 Msa0381000:CDS 50.0%
!! GAACGGTGGGTTGAAAGTCA+GGG - chr3_1:82924380-82924399 Msa0381000:CDS 50.0%
!! TGACGGATCATGCGGGTTTT+GGG + chr3_1:82924425-82924444 None:intergenic 50.0%
TGGGAAATGGAGGTTGAGGA+CGG + chr3_1:82924567-82924586 None:intergenic 50.0%
CTTAACGCACGCGGCATTTA+AGG + chr3_1:82925339-82925358 None:intergenic 50.0%
ATGCTTTGCATGCTCAGCCT+TGG - chr3_1:82926256-82926275 Msa0381000:intron 50.0%
! TTCTTTGAGGGGTGTGTGGT+GGG + chr3_1:82926894-82926913 None:intergenic 50.0%
! TTTCTTTGAGGGGTGTGTGG+TGG + chr3_1:82926895-82926914 None:intergenic 50.0%
ACCACACACCCCTCAAAGAA+AGG - chr3_1:82926894-82926913 Msa0381000:intron 50.0%
CCACACACCCCTCAAAGAAA+GGG - chr3_1:82926895-82926914 Msa0381000:intron 50.0%
ACACCCCTCAAAGAAAGGGA+GGG - chr3_1:82926899-82926918 Msa0381000:intron 50.0%
AACCATAGCCCCCCAAATGT+TGG + chr3_1:82926966-82926985 None:intergenic 50.0%
TCTTCTTGGGGTGACAAACC+TGG - chr3_1:82927503-82927522 Msa0381000:intron 50.0%
! AGCCTCTAGGCTCTAATACC+AGG + chr3_1:82927524-82927543 None:intergenic 50.0%
GGCTGAGACTAGTACTCAAC+CGG + chr3_1:82927777-82927796 None:intergenic 50.0%
TCTCTTCCCCTGTTGAGATG+AGG - chr3_1:82928281-82928300 Msa0381000:intron 50.0%
! TGGAACCCCTTTTGCATGGA+CGG + chr3_1:82928574-82928593 None:intergenic 50.0%
CTGGAAGAGGGATGCTATCT+AGG + chr3_1:82928726-82928745 None:intergenic 50.0%
TCTTTGTGGCAGCTGGAAGA+GGG + chr3_1:82928738-82928757 None:intergenic 50.0%
ATCTTTGTGGCAGCTGGAAG+AGG + chr3_1:82928739-82928758 None:intergenic 50.0%
GGAAACATCTTTGTGGCAGC+TGG + chr3_1:82928745-82928764 None:intergenic 50.0%
ACTGGGTCTTCAACATTGGC+AGG + chr3_1:82928766-82928785 None:intergenic 50.0%
CTAGTTCCTCTGATTCAGGG+TGG - chr3_1:82929157-82929176 Msa0381000:intron 50.0%
!! GTGGACTTGGCTTGTAACTG+TGG + chr3_1:82929492-82929511 None:intergenic 50.0%
ATCTTTCCCGCTAACAGCAG+TGG + chr3_1:82929511-82929530 None:intergenic 50.0%
GCATCAATGACCCTTCTGTC+AGG + chr3_1:82929641-82929660 None:intergenic 50.0%
ATGCCATCATCTGCTCCACT+TGG - chr3_1:82929657-82929676 Msa0381000:intron 50.0%
! TGAGGAAATCTAGAGCCGAC+AGG - chr3_1:82929688-82929707 Msa0381000:intron 50.0%
GGTCTAAGCGTAGCAGAATC+TGG - chr3_1:82929810-82929829 Msa0381000:intron 50.0%
TCGGGGAAATCAAGGGAAAC+AGG - chr3_1:82929876-82929895 Msa0381000:intron 50.0%
CGGGGAAATCAAGGGAAACA+GGG - chr3_1:82929877-82929896 Msa0381000:intron 50.0%
! GATACATGGTCTTGGACGTG+GGG - chr3_1:82930064-82930083 Msa0381000:intron 50.0%
! ATACATGGTCTTGGACGTGG+GGG - chr3_1:82930065-82930084 Msa0381000:intron 50.0%
TTGGCAGATTCCTACAAGGG+AGG - chr3_1:82930116-82930135 Msa0381000:CDS 50.0%
!! GTTTCTGGAACAGAAGGGAG+AGG - chr3_1:82930158-82930177 Msa0381000:CDS 50.0%
GAAGTGGAGGGTAGAGATCA+AGG - chr3_1:82930266-82930285 Msa0381000:intron 50.0%
GGTCCAAATAACAGAGGGAG+AGG - chr3_1:82930287-82930306 Msa0381000:intron 50.0%
CTCCCTCTCCCTCTGTTATT+TGG + chr3_1:82930293-82930312 None:intergenic 50.0%
AATAACAGAGGGAGAGGGAG+AGG - chr3_1:82930293-82930312 Msa0381000:intron 50.0%
!! TGGCTTGGTCCTTCCTGTAA+TGG + chr3_1:82930346-82930365 None:intergenic 50.0%
CCCAAGGAGGAGAAAACTGT+CGG + chr3_1:82930547-82930566 None:intergenic 50.0%
! CCGACAGTTTTCTCCTCCTT+GGG - chr3_1:82930544-82930563 Msa0381000:intron 50.0%
TTTCTCCTCCTTGGGAAGCA+TGG - chr3_1:82930552-82930571 Msa0381000:intron 50.0%
TGTATGAGCCATGCTTCCCA+AGG + chr3_1:82930563-82930582 None:intergenic 50.0%
! GCTCGGTTGTTGTTCATTGG+AGG - chr3_1:82931134-82931153 Msa0381000:five_prime_UTR 50.0%
TCGTCAGGTAGGGTTCAACC+GGG - chr3_1:82922978-82922997 Msa0381000:three_prime_UTR 55.0%
GCAGCGACAGCTTCATCTTG+CGG + chr3_1:82923035-82923054 None:intergenic 55.0%
CAAGATGAAGCTGTCGCTGC+TGG - chr3_1:82923035-82923054 Msa0381000:three_prime_UTR 55.0%
!!! GAAGCTGTCGCTGCTGGTTT+TGG - chr3_1:82923041-82923060 Msa0381000:three_prime_UTR 55.0%
!!! GCTGGTTTTGGCGCAGAAGA+TGG - chr3_1:82923053-82923072 Msa0381000:three_prime_UTR 55.0%
!! GGTTTTGGCGCAGAAGATGG+TGG - chr3_1:82923056-82923075 Msa0381000:three_prime_UTR 55.0%
!! TGGCGCAGAAGATGGTGGAT+TGG - chr3_1:82923061-82923080 Msa0381000:three_prime_UTR 55.0%
CAACAATCCCTCTAGCCCCA+CGG + chr3_1:82923675-82923694 None:intergenic 55.0%
! GAATGGCAGGCCATGATGGA+TGG - chr3_1:82924327-82924346 Msa0381000:CDS 55.0%
CCATGGCATGGTGGTAGGAA+CGG - chr3_1:82924363-82924382 Msa0381000:CDS 55.0%
!! GGAACGGTGGGTTGAAAGTC+AGG - chr3_1:82924379-82924398 Msa0381000:CDS 55.0%
!!! GATCATGCGGGTTTTGGGTC+GGG + chr3_1:82924420-82924439 None:intergenic 55.0%
!!! GGATCATGCGGGTTTTGGGT+CGG + chr3_1:82924421-82924440 None:intergenic 55.0%
!! CTGACGGATCATGCGGGTTT+TGG + chr3_1:82924426-82924445 None:intergenic 55.0%
! ACACAGCTGACGGATCATGC+GGG + chr3_1:82924432-82924451 None:intergenic 55.0%
! GACACAGCTGACGGATCATG+CGG + chr3_1:82924433-82924452 None:intergenic 55.0%
! CCCTTTCTTTGAGGGGTGTG+TGG + chr3_1:82926898-82926917 None:intergenic 55.0%
CACACCCCTCAAAGAAAGGG+AGG - chr3_1:82926898-82926917 Msa0381000:intron 55.0%
AGATGCTGAGCTTCCTTGCC+AGG - chr3_1:82928530-82928549 Msa0381000:intron 55.0%
GCGAATCATGCAACCTGGCA+AGG + chr3_1:82928546-82928565 None:intergenic 55.0%
GCCAAGTCCACTGCTGTTAG+CGG - chr3_1:82929501-82929520 Msa0381000:intron 55.0%
CCAAGTCCACTGCTGTTAGC+GGG - chr3_1:82929502-82929521 Msa0381000:intron 55.0%
GAAACAGGGACCGGAAACTC+TGG - chr3_1:82929891-82929910 Msa0381000:intron 55.0%
!! GGCGTTTTGGCCAGAGTTTC+CGG + chr3_1:82929904-82929923 None:intergenic 55.0%
AACTTCTGTACCGCGCCAAG+AGG + chr3_1:82930098-82930117 None:intergenic 55.0%
TCTTGGCGCGGTACAGAAGT+TGG - chr3_1:82930097-82930116 Msa0381000:intron 55.0%
GCAGATTCCTACAAGGGAGG+AGG - chr3_1:82930119-82930138 Msa0381000:CDS 55.0%
GATTCCTACAAGGGAGGAGG+TGG - chr3_1:82930122-82930141 Msa0381000:CDS 55.0%
GTTACCACCTCCTCCCTTGT+AGG + chr3_1:82930129-82930148 None:intergenic 55.0%
GTGGCAGGGGAAAGAGAGAA+GGG - chr3_1:82930189-82930208 Msa0381000:CDS 55.0%
TGGCAGGGGAAAGAGAGAAG+GGG - chr3_1:82930190-82930209 Msa0381000:CDS 55.0%
GAGAGGGAGAGGTAGAGGAA+GGG - chr3_1:82930304-82930323 Msa0381000:intron 55.0%
AGAGGGAGAGGTAGAGGAAG+GGG - chr3_1:82930305-82930324 Msa0381000:intron 55.0%
! GCCGACAGTTTTCTCCTCCT+TGG - chr3_1:82930543-82930562 Msa0381000:intron 55.0%
ATGAGCCATGCTTCCCAAGG+AGG + chr3_1:82930560-82930579 None:intergenic 55.0%
!! AGGAGGGTTAGCATTGGCTC+TGG - chr3_1:82930987-82931006 Msa0381000:CDS 55.0%
!! TTAGCATTGGCTCTGGCCTC+TGG - chr3_1:82930994-82931013 Msa0381000:CDS 55.0%
!! TAGCATTGGCTCTGGCCTCT+GGG - chr3_1:82930995-82931014 Msa0381000:CDS 55.0%
TCCTATGACTTCGACCCCAG+AGG + chr3_1:82931013-82931032 None:intergenic 55.0%
CGTCAGGTAGGGTTCAACCG+GGG - chr3_1:82922979-82922998 Msa0381000:three_prime_UTR 60.0%
GTCAGGTAGGGTTCAACCGG+GGG - chr3_1:82922980-82922999 Msa0381000:three_prime_UTR 60.0%
TCAGGTAGGGTTCAACCGGG+GGG - chr3_1:82922981-82923000 Msa0381000:three_prime_UTR 60.0%
! GTTCAACCGGGGGGTGTGAA+TGG - chr3_1:82922990-82923009 Msa0381000:three_prime_UTR 60.0%
GGGGCTAGAGGGATTGTTGC+TGG - chr3_1:82923676-82923695 Msa0381000:CDS 60.0%
GTATCAGCTGGTCGAGCACC+AGG + chr3_1:82923861-82923880 None:intergenic 60.0%
CTCATGGAGCCATGGCATGG+TGG - chr3_1:82924354-82924373 Msa0381000:CDS 60.0%
TGGAGCCATGGCATGGTGGT+AGG - chr3_1:82924358-82924377 Msa0381000:CDS 60.0%
CCGTTCCTACCACCATGCCA+TGG + chr3_1:82924366-82924385 None:intergenic 60.0%
TGGCATGGTGGTAGGAACGG+TGG - chr3_1:82924366-82924385 Msa0381000:CDS 60.0%
GGCATGGTGGTAGGAACGGT+GGG - chr3_1:82924367-82924386 Msa0381000:CDS 60.0%
CGCCAACATTTGGGGGGCTA+TGG - chr3_1:82926961-82926980 Msa0381000:intron 60.0%
! CCCGCTAACAGCAGTGGACT+TGG + chr3_1:82929505-82929524 None:intergenic 60.0%
TCTGTACCGCGCCAAGAGGA+AGG + chr3_1:82930094-82930113 None:intergenic 60.0%
GGAACAGAAGGGAGAGGGAG+TGG - chr3_1:82930164-82930183 Msa0381000:CDS 60.0%
ACAGAAGGGAGAGGGAGTGG+CGG - chr3_1:82930167-82930186 Msa0381000:CDS 60.0%
GGTGGCAGGGGAAAGAGAGA+AGG - chr3_1:82930188-82930207 Msa0381000:CDS 60.0%
GGCAGGGGAAAGAGAGAAGG+GGG - chr3_1:82930191-82930210 Msa0381000:CDS 60.0%
GCAGGGGAAAGAGAGAAGGG+GGG - chr3_1:82930192-82930211 Msa0381000:CDS 60.0%
AGAGGGAGAGGGAGAGGTAG+AGG - chr3_1:82930299-82930318 Msa0381000:intron 60.0%
GGAGAGGGAGAGGTAGAGGA+AGG - chr3_1:82930303-82930322 Msa0381000:intron 60.0%
AGAGGTAGAGGAAGGGGAGG+AGG - chr3_1:82930311-82930330 Msa0381000:intron 60.0%
!! AGCATTGGCTCTGGCCTCTG+GGG - chr3_1:82930996-82931015 Msa0381000:CDS 60.0%
!! GCCTCTGGGGTCGAAGTCAT+AGG - chr3_1:82931009-82931028 Msa0381000:CDS 60.0%
TTCCCTCACCGTGGGGCTAG+AGG - chr3_1:82923664-82923683 Msa0381000:CDS 65.0%
TCCCTCACCGTGGGGCTAGA+GGG - chr3_1:82923665-82923684 Msa0381000:CDS 65.0%
TCCCTCTAGCCCCACGGTGA+GGG + chr3_1:82923669-82923688 None:intergenic 65.0%
ATCCCTCTAGCCCCACGGTG+AGG + chr3_1:82923670-82923689 None:intergenic 65.0%
!!! AGCGGGTTTTGGCTTGCGGC+AGG - chr3_1:82924946-82924965 Msa0381000:CDS 65.0%
CGTGGGGGCAACCTTCCTCT+TGG - chr3_1:82930080-82930099 Msa0381000:intron 65.0%
GGGCAACCTTCCTCTTGGCG+CGG - chr3_1:82930085-82930104 Msa0381000:intron 65.0%
GGGAGAGGTAGAGGAAGGGG+AGG - chr3_1:82930308-82930327 Msa0381000:intron 65.0%
GAAGGGAGAGGGAGTGGCGG+TGG - chr3_1:82930170-82930189 Msa0381000:CDS 70.0%
GAGAGGGAGTGGCGGTGGCA+GGG - chr3_1:82930175-82930194 Msa0381000:CDS 70.0%
AGAGGGAGTGGCGGTGGCAG+GGG - chr3_1:82930176-82930195 Msa0381000:CDS 70.0%
GGAGAGGGAGTGGCGGTGGC+AGG - chr3_1:82930174-82930193 Msa0381000:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 82922699 82931171 82922699 ID=Msa0381000;Name=Msa0381000
chr3_1 mRNA 82922699 82931171 82922699 ID=Msa0381000-mRNA-1;Parent=Msa0381000;Name=Msa0381000-mRNA-1;_AED=0.06;_eAED=0.06;_QI=111|1|1|1|0.77|0.7|10|723|867
chr3_1 exon 82922699 82922758 82922699 ID=Msa0381000-mRNA-1:exon:21228;Parent=Msa0381000-mRNA-1
chr3_1 exon 82922807 82924695 82922807 ID=Msa0381000-mRNA-1:exon:21227;Parent=Msa0381000-mRNA-1
chr3_1 exon 82924936 82925354 82924936 ID=Msa0381000-mRNA-1:exon:21226;Parent=Msa0381000-mRNA-1
chr3_1 exon 82925568 82925665 82925568 ID=Msa0381000-mRNA-1:exon:21225;Parent=Msa0381000-mRNA-1
chr3_1 exon 82926411 82926476 82926411 ID=Msa0381000-mRNA-1:exon:21224;Parent=Msa0381000-mRNA-1
chr3_1 exon 82927508 82927621 82927508 ID=Msa0381000-mRNA-1:exon:21223;Parent=Msa0381000-mRNA-1
chr3_1 exon 82928579 82928673 82928579 ID=Msa0381000-mRNA-1:exon:21222;Parent=Msa0381000-mRNA-1
chr3_1 exon 82929967 82930028 82929967 ID=Msa0381000-mRNA-1:exon:21221;Parent=Msa0381000-mRNA-1
chr3_1 exon 82930115 82930274 82930115 ID=Msa0381000-mRNA-1:exon:21220;Parent=Msa0381000-mRNA-1
chr3_1 exon 82930697 82931171 82930697 ID=Msa0381000-mRNA-1:exon:21219;Parent=Msa0381000-mRNA-1
chr3_1 five_prime_UTR 82931061 82931171 82931061 ID=Msa0381000-mRNA-1:five_prime_utr;Parent=Msa0381000-mRNA-1
chr3_1 CDS 82930697 82931060 82930697 ID=Msa0381000-mRNA-1:cds;Parent=Msa0381000-mRNA-1
chr3_1 CDS 82930115 82930274 82930115 ID=Msa0381000-mRNA-1:cds;Parent=Msa0381000-mRNA-1
chr3_1 CDS 82929967 82930028 82929967 ID=Msa0381000-mRNA-1:cds;Parent=Msa0381000-mRNA-1
chr3_1 CDS 82928579 82928673 82928579 ID=Msa0381000-mRNA-1:cds;Parent=Msa0381000-mRNA-1
chr3_1 CDS 82927508 82927621 82927508 ID=Msa0381000-mRNA-1:cds;Parent=Msa0381000-mRNA-1
chr3_1 CDS 82926411 82926476 82926411 ID=Msa0381000-mRNA-1:cds;Parent=Msa0381000-mRNA-1
chr3_1 CDS 82925568 82925665 82925568 ID=Msa0381000-mRNA-1:cds;Parent=Msa0381000-mRNA-1
chr3_1 CDS 82924936 82925354 82924936 ID=Msa0381000-mRNA-1:cds;Parent=Msa0381000-mRNA-1
chr3_1 CDS 82923470 82924695 82923470 ID=Msa0381000-mRNA-1:cds;Parent=Msa0381000-mRNA-1
chr3_1 three_prime_UTR 82922807 82923469 82922807 ID=Msa0381000-mRNA-1:three_prime_utr;Parent=Msa0381000-mRNA-1
chr3_1 three_prime_UTR 82922699 82922758 82922699 ID=Msa0381000-mRNA-1:three_prime_utr;Parent=Msa0381000-mRNA-1
Gene Sequence

>Msa0381000

ATGTCGAATCGTTACGGTCAAGGTAGGCAAGACAATTACAACAACAATAAGGGTTTCAACAAACCACAGATGAAATTCGTTCCTAAAAATTCGACCCCAACCTTGTCAACTTCCCTAAGAGAAAAACAACAACAAACTGGTTCTGGTTCTGGTAGCAATAGCAATACTTCGTCAGGTAGGGTTCAACCGGGGGGTGTGAATGGCAATTTCGTGTACTATTTGCCGCAAGATGAAGCTGTCGCTGCTGGTTTTGGCGCAGAAGATGGTGGATTGGATGCCCTTGAATCTCAGAAAGTTGTTGATCTTCTCAATTCTCAGTTGTCTCGTTTGCTCAAGTTGAAACCCAAAGATTTTTGGTCACAAGTGGCTAGTGATACATCCCTACATGAGTTTCTCAACAGCTTTCTGCAATTTAGGAGCAGGTGGTATGATTTCCCTCACCGTGGGGCTAGAGGGATTGTTGCTGGTGTTATTTTTGGAGAGCACGATTTGAGCCGTCGTGTTTTCATGATATTGTATCGAATGTCTTCCAATAGAGATCCTGGTGCTCGACCAGCTGATACACTCAGTTCAAAAGATCATGAAGTTCTTTTGCAGGAGAAGAAGTTGCTTGATTTGCCAAAGTTGTTTGATATATGTGCCATATACAGTCATGAAAATGCAGAATTGACAAGATTGCTGGTTAAAAATGCTTTGCATGCTCAGCCTTGGTTACATGATAATTTAGCTGCAGTAACATCTCATTTTATGGTCATTGTAAGCACAATGCATGAACGATGCAGTTCATCATTAGAGGTCTTATTTGCTTCTGGAAGTCTTGATGACCATAATGCTACTTTACTAAAAACTGATCTTCTGGAGGTGATGGACTTCATAAATGATGCAATTGTGTCAATGGATGCTTTTGTTAGTGCATACGAACAAGCAGCTTTATTGTTCTCTTCCCCTGTTGAGATGAGATATGGGAATGAGGAGATGCTGAGCTTCCTTGCCAGGTTGCATGATTCGCTAATTCCGTCCATGCAAAAGGGGTTCCATATCATTTTTGCTGGCAAACAAGATGACACAGTCTCTAATATTGTGGTTAGTTTGAAGATGTTAAGAATGAGATTGGTAAAGTTTGGGTGGCAATTGTTGCACCTTTGCTATTTAAGTGACGATGTGTTCCTAGATAGCATCCCTCTTCCAGCTGCCACAAAGATGTTTCCTGCCAATGTTGAAGACCCAGTCATCAGAGCAGATATTCTGGTTCAGACATTTAGAGAGATAAATACAGTATCATTAAGTTTCCAGGAAATCCATAAGAAGGAAACATTTCTTCAAGGTGTTGAAAGGAATTTCAATATATCAAGCAGGATTGAGGGATTACAGCATAATGGGTGGATATTCGTTGAGGATGAACAACTTAAATATATATCTGGGATTTTGAGTTCTTTGAAGGAGACTATTAACAGGGAGCCATATTCTGCAAAGATCTCTGTGCCGAACCAAACCATGCAGACAGATGAAGATGCTGCAGTTTTAGAGTCAAAAATCAGTCAAATTAGGGACCTATTCCCTGATTACGGTAAAGGGTTTTTATCGGCATGTCTCGAGGTCTATGACCACAATCCAGAAGAGGTCATTCAAAGAATTTTAGAAGGAACTCTTCATAATGATCTGAAGTGCTTGGATACTTCATTAGAGACGGTGCCACAGTTACAAGCCAAGTCCACTGCTGTTAGCGGGAAAGATAAAGGAAAAGGTGTACTAATTGATGTTAGCGGGAAAGAGAAAGGAAAAGGTATACTAATTGATTCTACGTCGGTGTCCTCAAATACAAAAGTTTCTAATGGGAAGAACCTGACAGAAGGGTCATTGATGCCATCATCTGCTCCACTTGGAAAATTTGTGAGGAAATCTAGAGCCGACAGGCCTGATCCAAGTATTTTGGACAATAATGATGAGAAAGATGCATCAAGAATTTTGCAATATGAATATGATGATGAGTATGATGACTCTTTTGATGACTTGGGTCTAAGCGTAGCAGAATCTGGAGTAGAAGAAAGTGAAGTGGTTGATGACGAAATGAATGAAAAATCGGGGAAATCAAGGGAAACAGGGACCGGAAACTCTGGCCAAAACGCCTCTAATACAAAATGGGGCTCTAGGCAAAAGCCACAGTACTATGTCAAAGATGGTAAGAATTACAGCTACAAAGTGTCTGGTGCAGTAGCAGTTGCAAATTCTAATGAAGCTTCTTTAGTTAATGAAGCTCAGAAAGAATTGATACATGGTCTTGGACGTGGGGGCAACCTTCCTCTTGGCGCGGTACAGAAGTTGGCAGATTCCTACAAGGGAGGAGGTGGTAACCAATTCCATGTTTCTGGAACAGAAGGGAGAGGGAGTGGCGGTGGCAGGGGAAAGAGAGAAGGGGGGAGACATATTGAACATAATCAACATCAGGAAAAACAATCTGATGATGTTTCTGAAGTGGAGGGTAGAGATCAAGGTCCAAATAACAGAGGGAGAGGGAGAGGTAGAGGAAGGGGAGGAGGTAGAAACAACCATTACAGGAAGGACCAAGCCATGAAGAAGCATTTCTCTGGATTGAGTGGTTTTTAA
Protein sequence

>Msa0381000

MSNRYGQGRQDNYNNNKGFNKPQMKFVPKNSTPTLSTSLREKQQQTGSGSGSNSNTSSGRVQPGGVNGNFVYYLPQDEAVAAGFGAEDGGLDALESQKVVDLLNSQLSRLLKLKPKDFWSQVASDTSLHEFLNSFLQFRSRWYDFPHRGARGIVAGVIFGEHDLSRRVFMILYRMSSNRDPGARPADTLSSKDHEVLLQEKKLLDLPKLFDICAIYSHENAELTRLLVKNALHAQPWLHDNLAAVTSHFMVIVSTMHERCSSSLEVLFASGSLDDHNATLLKTDLLEVMDFINDAIVSMDAFVSAYEQAALLFSSPVEMRYGNEEMLSFLARLHDSLIPSMQKGFHIIFAGKQDDTVSNIVVSLKMLRMRLVKFGWQLLHLCYLSDDVFLDSIPLPAATKMFPANVEDPVIRADILVQTFREINTVSLSFQEIHKKETFLQGVERNFNISSRIEGLQHNGWIFVEDEQLKYISGILSSLKETINREPYSAKISVPNQTMQTDEDAAVLESKISQIRDLFPDYGKGFLSACLEVYDHNPEEVIQRILEGTLHNDLKCLDTSLETVPQLQAKSTAVSGKDKGKGVLIDVSGKEKGKGILIDSTSVSSNTKVSNGKNLTEGSLMPSSAPLGKFVRKSRADRPDPSILDNNDEKDASRILQYEYDDEYDDSFDDLGLSVAESGVEESEVVDDEMNEKSGKSRETGTGNSGQNASNTKWGSRQKPQYYVKDGKNYSYKVSGAVAVANSNEASLVNEAQKELIHGLGRGGNLPLGAVQKLADSYKGGGGNQFHVSGTEGRGSGGGRGKREGGRHIEHNQHQEKQSDDVSEVEGRDQGPNNRGRGRGRGRGGGRNNHYRKDQAMKKHFSGLSGF*