AlfalfaGEDB | Msa0381000

M. sativa cultivar zhongmu-4 / Msa0381000

KEGG: K18667
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0099053 GO:1901360 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02845.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0381000	XP_013461775.1	97.005	868	19	3	1	867	1	862	0.0	1721

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0381000	sp\|Q9H1I8\|ASCC2_HUMAN	23.333	510	284	17	107	562	66	522	3.77e-23	109

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0381000	A0A072VCD1	97.005	868	19	3	1	867	1	862	0.0	1721

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa0381000	0.840392	8.941863e-58	-8.615850e-47
Msa0003220	Msa0381000	0.866205	3.379216e-65	-8.615850e-47
Msa0003270	Msa0381000	0.824394	8.266582e-54	-8.615850e-47
Msa0003630	Msa0381000	0.803527	3.340534e-49	-8.615850e-47
Msa0004540	Msa0381000	0.800752	1.243665e-48	-8.615850e-47
Msa0005000	Msa0381000	-0.830009	3.738736e-55	-8.615850e-47
Msa0005270	Msa0381000	0.833405	5.435064e-56	-8.615850e-47
Msa0008220	Msa0381000	0.810274	1.250423e-50	-8.615850e-47
Msa0010770	Msa0381000	0.876403	1.435495e-68	-8.615850e-47
Msa0013540	Msa0381000	0.802255	6.118519e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0381000	MtrunA17_Chr3g0134751	97.005	868	19	3	1	867	1	862	0.0	1721

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0381000	AT1G27752.1	51.492	905	369	14	1	867	1	873	0.0	724
Msa0381000	AT1G27752.2	49.034	673	295	10	212	867	15	656	7.14e-173	516

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Find 258 sgRNAs with CRISPR-Local

Find 586 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCTTTACCGTAATCA+GGG	0.581322	3_1:+82924495	None:intergenic
AAAACGCCTCTAATACAAAA+TGG	0.245784	3_1:-82923932	Msa0381000:CDS
AAACAACAACAAACTGGTTC+TGG	0.379109	3_1:-82930915	Msa0381000:CDS
AAACGCCTCTAATACAAAAT+GGG	0.406638	3_1:-82923931	Msa0381000:CDS
AAAGAATTGATACATGGTCT+TGG	0.465801	3_1:-82923792	Msa0381000:CDS
AAATCAAGGGAAACAGGGAC+CGG	0.528322	3_1:-82923966	Msa0381000:CDS
AAATGATGCAATTGTGTCAA+TGG	0.462048	3_1:-82925629	Msa0381000:CDS
AAATGCTTCTCAACTGACTT+AGG	0.443806	3_1:+82931139	None:intergenic
AAATTGGGCGTAGTTGACTA+AGG	0.512251	3_1:-82922918	Msa0381000:three_prime_UTR
AACAACTTAAATATATATCT+GGG	0.529820	3_1:-82924652	Msa0381000:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGAAAAACAACAACAAAC+TGG	-	chr3_1:82922927-82922946	Msa0381000:three_prime_UTR	30.0%
TAAAATTCTTCATCGATGCA+TGG	-	chr3_1:82923466-82923485	Msa0381000:exon	30.0%
TGTTTGGATTGTATTTGTAG+TGG	-	chr3_1:82923576-82923595	Msa0381000:CDS	30.0%
ACAATATCATGAAAACACGA+CGG	+	chr3_1:82923729-82923748	None:intergenic	30.0%
ACTGTCCACAAACTATAAAA+GGG	+	chr3_1:82923922-82923941	None:intergenic	30.0%
AAGTAATAGGGCAACTATAT+CGG	+	chr3_1:82924155-82924174	None:intergenic	30.0%
TCCACAACATATATTCTAGA+TGG	+	chr3_1:82924303-82924322	None:intergenic	30.0%
TATATGTTGTGGATTTCGAA+TGG	-	chr3_1:82924310-82924329	Msa0381000:CDS	30.0%
TTTCTGCAATGTTTATCTGA+TGG	-	chr3_1:82924459-82924478	Msa0381000:CDS	30.0%
ATAATGTTGTTCATGGGAAA+TGG	+	chr3_1:82924580-82924599	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	82922699	82931171	82922699	ID=Msa0381000;Name=Msa0381000
chr3_1	mRNA	82922699	82931171	82922699	ID=Msa0381000-mRNA-1;Parent=Msa0381000;Name=Msa0381000-mRNA-1;_AED=0.06;_eAED=0.06;_QI=111\|1\|1\|1\|0.77\|0.7\|10\|723\|867
chr3_1	exon	82922699	82922758	82922699	ID=Msa0381000-mRNA-1:exon:21228;Parent=Msa0381000-mRNA-1
chr3_1	exon	82922807	82924695	82922807	ID=Msa0381000-mRNA-1:exon:21227;Parent=Msa0381000-mRNA-1
chr3_1	exon	82924936	82925354	82924936	ID=Msa0381000-mRNA-1:exon:21226;Parent=Msa0381000-mRNA-1
chr3_1	exon	82925568	82925665	82925568	ID=Msa0381000-mRNA-1:exon:21225;Parent=Msa0381000-mRNA-1
chr3_1	exon	82926411	82926476	82926411	ID=Msa0381000-mRNA-1:exon:21224;Parent=Msa0381000-mRNA-1
chr3_1	exon	82927508	82927621	82927508	ID=Msa0381000-mRNA-1:exon:21223;Parent=Msa0381000-mRNA-1
chr3_1	exon	82928579	82928673	82928579	ID=Msa0381000-mRNA-1:exon:21222;Parent=Msa0381000-mRNA-1
chr3_1	exon	82929967	82930028	82929967	ID=Msa0381000-mRNA-1:exon:21221;Parent=Msa0381000-mRNA-1
chr3_1	exon	82930115	82930274	82930115	ID=Msa0381000-mRNA-1:exon:21220;Parent=Msa0381000-mRNA-1
chr3_1	exon	82930697	82931171	82930697	ID=Msa0381000-mRNA-1:exon:21219;Parent=Msa0381000-mRNA-1
chr3_1	five_prime_UTR	82931061	82931171	82931061	ID=Msa0381000-mRNA-1:five_prime_utr;Parent=Msa0381000-mRNA-1
chr3_1	CDS	82930697	82931060	82930697	ID=Msa0381000-mRNA-1:cds;Parent=Msa0381000-mRNA-1
chr3_1	CDS	82930115	82930274	82930115	ID=Msa0381000-mRNA-1:cds;Parent=Msa0381000-mRNA-1
chr3_1	CDS	82929967	82930028	82929967	ID=Msa0381000-mRNA-1:cds;Parent=Msa0381000-mRNA-1
chr3_1	CDS	82928579	82928673	82928579	ID=Msa0381000-mRNA-1:cds;Parent=Msa0381000-mRNA-1
chr3_1	CDS	82927508	82927621	82927508	ID=Msa0381000-mRNA-1:cds;Parent=Msa0381000-mRNA-1
chr3_1	CDS	82926411	82926476	82926411	ID=Msa0381000-mRNA-1:cds;Parent=Msa0381000-mRNA-1
chr3_1	CDS	82925568	82925665	82925568	ID=Msa0381000-mRNA-1:cds;Parent=Msa0381000-mRNA-1
chr3_1	CDS	82924936	82925354	82924936	ID=Msa0381000-mRNA-1:cds;Parent=Msa0381000-mRNA-1
chr3_1	CDS	82923470	82924695	82923470	ID=Msa0381000-mRNA-1:cds;Parent=Msa0381000-mRNA-1
chr3_1	three_prime_UTR	82922807	82923469	82922807	ID=Msa0381000-mRNA-1:three_prime_utr;Parent=Msa0381000-mRNA-1
chr3_1	three_prime_UTR	82922699	82922758	82922699	ID=Msa0381000-mRNA-1:three_prime_utr;Parent=Msa0381000-mRNA-1

Gene Sequence

>Msa0381000

ATGTCGAATCGTTACGGTCAAGGTAGGCAAGACAATTACAACAACAATAAGGGTTTCAACAAACCACAGATGAAATTCGTTCCTAAAAATTCGACCCCAACCTTGTCAACTTCCCTAAGAGAAAAACAACAACAAACTGGTTCTGGTTCTGGTAGCAATAGCAATACTTCGTCAGGTAGGGTTCAACCGGGGGGTGTGAATGGCAATTTCGTGTACTATTTGCCGCAAGATGAAGCTGTCGCTGCTGGTTTTGGCGCAGAAGATGGTGGATTGGATGCCCTTGAATCTCAGAAAGTTGTTGATCTTCTCAATTCTCAGTTGTCTCGTTTGCTCAAGTTGAAACCCAAAGATTTTTGGTCACAAGTGGCTAGTGATACATCCCTACATGAGTTTCTCAACAGCTTTCTGCAATTTAGGAGCAGGTGGTATGATTTCCCTCACCGTGGGGCTAGAGGGATTGTTGCTGGTGTTATTTTTGGAGAGCACGATTTGAGCCGTCGTGTTTTCATGATATTGTATCGAATGTCTTCCAATAGAGATCCTGGTGCTCGACCAGCTGATACACTCAGTTCAAAAGATCATGAAGTTCTTTTGCAGGAGAAGAAGTTGCTTGATTTGCCAAAGTTGTTTGATATATGTGCCATATACAGTCATGAAAATGCAGAATTGACAAGATTGCTGGTTAAAAATGCTTTGCATGCTCAGCCTTGGTTACATGATAATTTAGCTGCAGTAACATCTCATTTTATGGTCATTGTAAGCACAATGCATGAACGATGCAGTTCATCATTAGAGGTCTTATTTGCTTCTGGAAGTCTTGATGACCATAATGCTACTTTACTAAAAACTGATCTTCTGGAGGTGATGGACTTCATAAATGATGCAATTGTGTCAATGGATGCTTTTGTTAGTGCATACGAACAAGCAGCTTTATTGTTCTCTTCCCCTGTTGAGATGAGATATGGGAATGAGGAGATGCTGAGCTTCCTTGCCAGGTTGCATGATTCGCTAATTCCGTCCATGCAAAAGGGGTTCCATATCATTTTTGCTGGCAAACAAGATGACACAGTCTCTAATATTGTGGTTAGTTTGAAGATGTTAAGAATGAGATTGGTAAAGTTTGGGTGGCAATTGTTGCACCTTTGCTATTTAAGTGACGATGTGTTCCTAGATAGCATCCCTCTTCCAGCTGCCACAAAGATGTTTCCTGCCAATGTTGAAGACCCAGTCATCAGAGCAGATATTCTGGTTCAGACATTTAGAGAGATAAATACAGTATCATTAAGTTTCCAGGAAATCCATAAGAAGGAAACATTTCTTCAAGGTGTTGAAAGGAATTTCAATATATCAAGCAGGATTGAGGGATTACAGCATAATGGGTGGATATTCGTTGAGGATGAACAACTTAAATATATATCTGGGATTTTGAGTTCTTTGAAGGAGACTATTAACAGGGAGCCATATTCTGCAAAGATCTCTGTGCCGAACCAAACCATGCAGACAGATGAAGATGCTGCAGTTTTAGAGTCAAAAATCAGTCAAATTAGGGACCTATTCCCTGATTACGGTAAAGGGTTTTTATCGGCATGTCTCGAGGTCTATGACCACAATCCAGAAGAGGTCATTCAAAGAATTTTAGAAGGAACTCTTCATAATGATCTGAAGTGCTTGGATACTTCATTAGAGACGGTGCCACAGTTACAAGCCAAGTCCACTGCTGTTAGCGGGAAAGATAAAGGAAAAGGTGTACTAATTGATGTTAGCGGGAAAGAGAAAGGAAAAGGTATACTAATTGATTCTACGTCGGTGTCCTCAAATACAAAAGTTTCTAATGGGAAGAACCTGACAGAAGGGTCATTGATGCCATCATCTGCTCCACTTGGAAAATTTGTGAGGAAATCTAGAGCCGACAGGCCTGATCCAAGTATTTTGGACAATAATGATGAGAAAGATGCATCAAGAATTTTGCAATATGAATATGATGATGAGTATGATGACTCTTTTGATGACTTGGGTCTAAGCGTAGCAGAATCTGGAGTAGAAGAAAGTGAAGTGGTTGATGACGAAATGAATGAAAAATCGGGGAAATCAAGGGAAACAGGGACCGGAAACTCTGGCCAAAACGCCTCTAATACAAAATGGGGCTCTAGGCAAAAGCCACAGTACTATGTCAAAGATGGTAAGAATTACAGCTACAAAGTGTCTGGTGCAGTAGCAGTTGCAAATTCTAATGAAGCTTCTTTAGTTAATGAAGCTCAGAAAGAATTGATACATGGTCTTGGACGTGGGGGCAACCTTCCTCTTGGCGCGGTACAGAAGTTGGCAGATTCCTACAAGGGAGGAGGTGGTAACCAATTCCATGTTTCTGGAACAGAAGGGAGAGGGAGTGGCGGTGGCAGGGGAAAGAGAGAAGGGGGGAGACATATTGAACATAATCAACATCAGGAAAAACAATCTGATGATGTTTCTGAAGTGGAGGGTAGAGATCAAGGTCCAAATAACAGAGGGAGAGGGAGAGGTAGAGGAAGGGGAGGAGGTAGAAACAACCATTACAGGAAGGACCAAGCCATGAAGAAGCATTTCTCTGGATTGAGTGGTTTTTAA

Protein sequence

>Msa0381000

MSNRYGQGRQDNYNNNKGFNKPQMKFVPKNSTPTLSTSLREKQQQTGSGSGSNSNTSSGRVQPGGVNGNFVYYLPQDEAVAAGFGAEDGGLDALESQKVVDLLNSQLSRLLKLKPKDFWSQVASDTSLHEFLNSFLQFRSRWYDFPHRGARGIVAGVIFGEHDLSRRVFMILYRMSSNRDPGARPADTLSSKDHEVLLQEKKLLDLPKLFDICAIYSHENAELTRLLVKNALHAQPWLHDNLAAVTSHFMVIVSTMHERCSSSLEVLFASGSLDDHNATLLKTDLLEVMDFINDAIVSMDAFVSAYEQAALLFSSPVEMRYGNEEMLSFLARLHDSLIPSMQKGFHIIFAGKQDDTVSNIVVSLKMLRMRLVKFGWQLLHLCYLSDDVFLDSIPLPAATKMFPANVEDPVIRADILVQTFREINTVSLSFQEIHKKETFLQGVERNFNISSRIEGLQHNGWIFVEDEQLKYISGILSSLKETINREPYSAKISVPNQTMQTDEDAAVLESKISQIRDLFPDYGKGFLSACLEVYDHNPEEVIQRILEGTLHNDLKCLDTSLETVPQLQAKSTAVSGKDKGKGVLIDVSGKEKGKGILIDSTSVSSNTKVSNGKNLTEGSLMPSSAPLGKFVRKSRADRPDPSILDNNDEKDASRILQYEYDDEYDDSFDDLGLSVAESGVEESEVVDDEMNEKSGKSRETGTGNSGQNASNTKWGSRQKPQYYVKDGKNYSYKVSGAVAVANSNEASLVNEAQKELIHGLGRGGNLPLGAVQKLADSYKGGGGNQFHVSGTEGRGSGGGRGKREGGRHIEHNQHQEKQSDDVSEVEGRDQGPNNRGRGRGRGRGGGRNNHYRKDQAMKKHFSGLSGF*