Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073830 | XP_003625072.1 | 98.261 | 115 | 2 | 0 | 1 | 115 | 1 | 115 | 1.44e-76 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073830 | sp|Q39096|ERD15_ARATH | 65.000 | 80 | 24 | 2 | 1 | 76 | 1 | 80 | 2.51e-29 | 106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073830 | Q2HRG8 | 98.261 | 115 | 2 | 0 | 1 | 115 | 1 | 115 | 6.87e-77 | 231 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000940 | Msa1073830 | 0.803404 | 3.543257e-49 | -8.615850e-47 |
| Msa0008840 | Msa1073830 | 0.830381 | 3.032468e-55 | -8.615850e-47 |
| Msa0014830 | Msa1073830 | 0.806482 | 8.052240e-50 | -8.615850e-47 |
| Msa0022750 | Msa1073830 | -0.807241 | 5.563778e-50 | -8.615850e-47 |
| Msa0027390 | Msa1073830 | 0.801408 | 9.134128e-49 | -8.615850e-47 |
| Msa0033880 | Msa1073830 | 0.803819 | 2.905298e-49 | -8.615850e-47 |
| Msa0055070 | Msa1073830 | 0.809095 | 2.240979e-50 | -8.615850e-47 |
| Msa0057750 | Msa1073830 | 0.827608 | 1.424440e-54 | -8.615850e-47 |
| Msa0074750 | Msa1073830 | 0.818865 | 1.568270e-52 | -8.615850e-47 |
| Msa0081650 | Msa1073830 | 0.813588 | 2.372631e-51 | -8.615850e-47 |
| Msa0084430 | Msa1073830 | 0.809257 | 2.069625e-50 | -8.615850e-47 |
| Msa0090390 | Msa1073830 | 0.802172 | 6.364778e-49 | -8.615850e-47 |
| Msa0096580 | Msa1073830 | 0.805044 | 1.614468e-49 | -8.615850e-47 |
| Msa0097610 | Msa1073830 | 0.807614 | 4.637188e-50 | -8.615850e-47 |
| Msa0101020 | Msa1073830 | 0.811794 | 5.857144e-51 | -8.615850e-47 |
| Msa0101180 | Msa1073830 | 0.805020 | 1.633182e-49 | -8.615850e-47 |
| Msa0103070 | Msa1073830 | 0.826261 | 2.988748e-54 | -8.615850e-47 |
| Msa0614510 | Msa1073830 | 0.824807 | 6.607485e-54 | -8.615850e-47 |
| Msa0617260 | Msa1073830 | 0.818007 | 2.454175e-52 | -8.615850e-47 |
| Msa0620330 | Msa1073830 | 0.817107 | 3.915025e-52 | -8.615850e-47 |
| Msa0624120 | Msa1073830 | 0.802180 | 6.341193e-49 | -8.615850e-47 |
| Msa0652760 | Msa1073830 | 0.801647 | 8.157631e-49 | -8.615850e-47 |
| Msa0661710 | Msa1073830 | 0.818433 | 1.965352e-52 | -8.615850e-47 |
| Msa0679550 | Msa1073830 | 0.807550 | 4.785506e-50 | -8.615850e-47 |
| Msa0682090 | Msa1073830 | 0.803827 | 2.894817e-49 | -8.615850e-47 |
| Msa0682140 | Msa1073830 | 0.805090 | 1.578631e-49 | -8.615850e-47 |
| Msa0695010 | Msa1073830 | 0.800260 | 1.566303e-48 | -8.615850e-47 |
| Msa0705600 | Msa1073830 | 0.803841 | 2.876039e-49 | -8.615850e-47 |
| Msa0720370 | Msa1073830 | 0.817055 | 4.020652e-52 | -8.615850e-47 |
| Msa0721340 | Msa1073830 | 0.816592 | 5.108929e-52 | -8.615850e-47 |
| Msa0742510 | Msa1073830 | 0.806894 | 6.590866e-50 | -8.615850e-47 |
| Msa0743530 | Msa1073830 | 0.812279 | 4.591933e-51 | -8.615850e-47 |
| Msa0756930 | Msa1073830 | 0.826713 | 2.333068e-54 | -8.615850e-47 |
| Msa0757800 | Msa1073830 | 0.807410 | 5.123842e-50 | -8.615850e-47 |
| Msa0776750 | Msa1073830 | 0.868946 | 4.473156e-66 | -8.615850e-47 |
| Msa0779550 | Msa1073830 | 0.807808 | 4.217172e-50 | -8.615850e-47 |
| Msa0799060 | Msa1073830 | 0.800559 | 1.361603e-48 | -8.615850e-47 |
| Msa0818770 | Msa1073830 | 0.821700 | 3.512330e-53 | -8.615850e-47 |
| Msa0821800 | Msa1073830 | 0.801497 | 8.756797e-49 | -8.615850e-47 |
| Msa0822170 | Msa1073830 | 0.802954 | 4.389871e-49 | -8.615850e-47 |
| Msa0836500 | Msa1073830 | 0.807864 | 4.104978e-50 | -8.615850e-47 |
| Msa0131450 | Msa1073830 | 0.806183 | 9.307275e-50 | -8.615850e-47 |
| Msa0140400 | Msa1073830 | 0.808170 | 3.533154e-50 | -8.615850e-47 |
| Msa0140520 | Msa1073830 | -0.807165 | 5.776215e-50 | -8.615850e-47 |
| Msa0145110 | Msa1073830 | 0.805835 | 1.102064e-49 | -8.615850e-47 |
| Msa0165300 | Msa1073830 | 0.800102 | 1.687358e-48 | -8.615850e-47 |
| Msa0174000 | Msa1073830 | 0.804115 | 2.521540e-49 | -8.615850e-47 |
| Msa0175050 | Msa1073830 | 0.815175 | 1.057702e-51 | -8.615850e-47 |
| Msa0176330 | Msa1073830 | 0.821306 | 4.331529e-53 | -8.615850e-47 |
| Msa0183870 | Msa1073830 | 0.809804 | 1.578492e-50 | -8.615850e-47 |
| Msa0185510 | Msa1073830 | 0.802027 | 6.815724e-49 | -8.615850e-47 |
| Msa0186310 | Msa1073830 | 0.826330 | 2.878791e-54 | -8.615850e-47 |
| Msa0193600 | Msa1073830 | 0.802614 | 5.160120e-49 | -8.615850e-47 |
| Msa0202930 | Msa1073830 | 0.822525 | 2.261198e-53 | -8.615850e-47 |
| Msa0212750 | Msa1073830 | -0.803795 | 2.938735e-49 | -8.615850e-47 |
| Msa0236070 | Msa1073830 | 0.841693 | 4.069334e-58 | -8.615850e-47 |
| Msa0379570 | Msa1073830 | 0.804811 | 1.806066e-49 | -8.615850e-47 |
| Msa0387050 | Msa1073830 | 0.800315 | 1.527112e-48 | -8.615850e-47 |
| Msa0387880 | Msa1073830 | -0.801250 | 9.837870e-49 | -8.615850e-47 |
| Msa0392200 | Msa1073830 | 0.812662 | 3.787252e-51 | -8.615850e-47 |
| Msa0422180 | Msa1073830 | 0.804248 | 2.366694e-49 | -8.615850e-47 |
| Msa0423270 | Msa1073830 | 0.822393 | 2.426972e-53 | -8.615850e-47 |
| Msa0437400 | Msa1073830 | 0.800322 | 1.521829e-48 | -8.615850e-47 |
| Msa0439890 | Msa1073830 | 0.845073 | 5.097868e-59 | -8.615850e-47 |
| Msa0442310 | Msa1073830 | 0.812110 | 4.998228e-51 | -8.615850e-47 |
| Msa0461590 | Msa1073830 | 0.803972 | 2.700473e-49 | -8.615850e-47 |
| Msa0469350 | Msa1073830 | 0.811852 | 5.689500e-51 | -8.615850e-47 |
| Msa0482180 | Msa1073830 | 0.802332 | 5.899329e-49 | -8.615850e-47 |
| Msa0980020 | Msa1073830 | 0.808617 | 2.836633e-50 | -8.615850e-47 |
| Msa1009390 | Msa1073830 | 0.802376 | 5.778321e-49 | -8.615850e-47 |
| Msa1032170 | Msa1073830 | 0.811591 | 6.484299e-51 | -8.615850e-47 |
| Msa1033970 | Msa1073830 | 0.917994 | 2.692197e-86 | -8.615850e-47 |
| Msa1038210 | Msa1073830 | -0.805661 | 1.198701e-49 | -8.615850e-47 |
| Msa1070690 | Msa1073830 | 0.802057 | 6.720039e-49 | -8.615850e-47 |
| Msa1071660 | Msa1073830 | 0.842404 | 2.640141e-58 | -8.615850e-47 |
| Msa1073830 | Msa1096550 | 0.812262 | 4.632807e-51 | -8.615850e-47 |
| Msa1073830 | Msa1098290 | 0.812738 | 3.645754e-51 | -8.615850e-47 |
| Msa1073830 | Msa1113590 | 0.845021 | 5.265652e-59 | -8.615850e-47 |
| Msa1073830 | Msa1113880 | 0.807730 | 4.382158e-50 | -8.615850e-47 |
| Msa1073830 | Msa1114040 | 0.838154 | 3.403740e-57 | -8.615850e-47 |
| Msa1073830 | Msa1118710 | 0.828542 | 8.486758e-55 | -8.615850e-47 |
| Msa1073830 | Msa1133630 | 0.810501 | 1.117297e-50 | -8.615850e-47 |
| Msa1073830 | Msa1135810 | -0.805652 | 1.203820e-49 | -8.615850e-47 |
| Msa1073830 | Msa1138320 | 0.808796 | 2.597674e-50 | -8.615850e-47 |
| Msa1073830 | Msa1143020 | 0.803671 | 3.119209e-49 | -8.615850e-47 |
| Msa1073830 | Msa1158770 | 0.852518 | 4.380443e-61 | -8.615850e-47 |
| Msa1073830 | Msa1164020 | 0.811262 | 7.646374e-51 | -8.615850e-47 |
| Msa1073830 | Msa1169720 | 0.821021 | 5.037804e-53 | -8.615850e-47 |
| Msa1073830 | Msa1177780 | 0.806828 | 6.804359e-50 | -8.615850e-47 |
| Msa1073830 | Msa1240180 | 0.807496 | 4.913922e-50 | -8.615850e-47 |
| Msa1073830 | Msa1240210 | 0.804148 | 2.482290e-49 | -8.615850e-47 |
| Msa1073830 | Msa1253810 | 0.802852 | 4.607701e-49 | -8.615850e-47 |
| Msa1073830 | Msa1258370 | 0.823026 | 1.728382e-53 | -8.615850e-47 |
| Msa1073830 | Msa1270660 | 0.802647 | 5.080934e-49 | -8.615850e-47 |
| Msa1073830 | Msa1286550 | 0.835988 | 1.217271e-56 | -8.615850e-47 |
| Msa1073830 | Msa1294960 | 0.810133 | 1.340956e-50 | -8.615850e-47 |
| Msa1073830 | Msa1296300 | 0.813955 | 1.968977e-51 | -8.615850e-47 |
| Msa1073830 | Msa1307550 | 0.802383 | 5.757298e-49 | -8.615850e-47 |
| Msa1073830 | Msa1327490 | 0.802041 | 6.769859e-49 | -8.615850e-47 |
| Msa1073830 | Msa1329450 | 0.814949 | 1.186897e-51 | -8.615850e-47 |
| Msa1073830 | Msa1331280 | 0.800336 | 1.511976e-48 | -8.615850e-47 |
| Msa1073830 | Msa1332050 | 0.815235 | 1.025492e-51 | -8.615850e-47 |
| Msa1073830 | Msa1339190 | 0.809894 | 1.510069e-50 | -8.615850e-47 |
| Msa1073830 | Msa1340040 | -0.812760 | 3.604333e-51 | -8.615850e-47 |
| Msa1073830 | Msa1363700 | 0.801636 | 8.202398e-49 | -8.615850e-47 |
| Msa1073830 | Msa1370590 | 0.801682 | 8.023827e-49 | -8.615850e-47 |
| Msa1073830 | Msa1373880 | 0.813253 | 2.811040e-51 | -8.615850e-47 |
| Msa1073830 | Msa1385350 | 0.805725 | 1.161785e-49 | -8.615850e-47 |
| Msa1073830 | Msa1400120 | 0.806003 | 1.015606e-49 | -8.615850e-47 |
| Msa1073830 | Msa1422840 | 0.848010 | 8.048222e-60 | -8.615850e-47 |
| Msa1073830 | Msa1432130 | 0.802415 | 5.671279e-49 | -8.615850e-47 |
| Msa1073830 | Msa1439710 | 0.801594 | 8.365895e-49 | -8.615850e-47 |
| Msa1073830 | Msa1444120 | 0.810680 | 1.022068e-50 | -8.615850e-47 |
| Msa1073830 | Msa1458030 | 0.813678 | 2.266075e-51 | -8.615850e-47 |
| Msa0241740 | Msa1073830 | 0.808245 | 3.404648e-50 | -8.615850e-47 |
| Msa0259160 | Msa1073830 | 0.818370 | 2.030561e-52 | -8.615850e-47 |
| Msa0259270 | Msa1073830 | 0.803200 | 3.905816e-49 | -8.615850e-47 |
| Msa0273650 | Msa1073830 | 0.802437 | 5.613964e-49 | -8.615850e-47 |
| Msa0281480 | Msa1073830 | 0.809028 | 2.316395e-50 | -8.615850e-47 |
| Msa0288730 | Msa1073830 | 0.806473 | 8.086791e-50 | -8.615850e-47 |
| Msa0313930 | Msa1073830 | 0.808345 | 3.242360e-50 | -8.615850e-47 |
| Msa0320610 | Msa1073830 | 0.806347 | 8.596680e-50 | -8.615850e-47 |
| Msa0322680 | Msa1073830 | 0.816092 | 6.609768e-52 | -8.615850e-47 |
| Msa0335320 | Msa1073830 | -0.803055 | 4.184302e-49 | -8.615850e-47 |
| Msa0343190 | Msa1073830 | 0.814814 | 1.271582e-51 | -8.615850e-47 |
| Msa0346990 | Msa1073830 | 0.813414 | 2.591376e-51 | -8.615850e-47 |
| Msa0347750 | Msa1073830 | 0.803071 | 4.151807e-49 | -8.615850e-47 |
| Msa0347950 | Msa1073830 | 0.810046 | 1.400209e-50 | -8.615850e-47 |
| Msa0347990 | Msa1073830 | 0.825548 | 4.415556e-54 | -8.615850e-47 |
| Msa0351330 | Msa1073830 | 0.802324 | 5.920504e-49 | -8.615850e-47 |
| Msa0482940 | Msa1073830 | 0.801454 | 8.935529e-49 | -8.615850e-47 |
| Msa0487780 | Msa1073830 | 0.807011 | 6.226555e-50 | -8.615850e-47 |
| Msa0514610 | Msa1073830 | 0.811269 | 7.617562e-51 | -8.615850e-47 |
| Msa0517090 | Msa1073830 | 0.825864 | 3.715450e-54 | -8.615850e-47 |
| Msa0524600 | Msa1073830 | 0.805429 | 1.340682e-49 | -8.615850e-47 |
| Msa0537770 | Msa1073830 | 0.805218 | 1.484568e-49 | -8.615850e-47 |
| Msa0577200 | Msa1073830 | -0.807512 | 4.874768e-50 | -8.615850e-47 |
| Msa0578090 | Msa1073830 | 0.801839 | 7.451876e-49 | -8.615850e-47 |
| Msa0586850 | Msa1073830 | 0.803492 | 3.396727e-49 | -8.615850e-47 |
| Msa0594200 | Msa1073830 | 0.805264 | 1.451527e-49 | -8.615850e-47 |
| Msa0849810 | Msa1073830 | 0.810595 | 1.065908e-50 | -8.615850e-47 |
| Msa0857300 | Msa1073830 | 0.851943 | 6.382517e-61 | -8.615850e-47 |
| Msa0861830 | Msa1073830 | 0.807545 | 4.797384e-50 | -8.615850e-47 |
| Msa0866400 | Msa1073830 | 0.803038 | 4.217192e-49 | -8.615850e-47 |
| Msa0877710 | Msa1073830 | 0.861568 | 9.363050e-64 | -8.615850e-47 |
| Msa0881580 | Msa1073830 | 0.803372 | 3.597155e-49 | -8.615850e-47 |
| Msa0899350 | Msa1073830 | 0.801708 | 7.926221e-49 | -8.615850e-47 |
| Msa0914260 | Msa1073830 | 0.837167 | 6.096913e-57 | -8.615850e-47 |
| Msa0928120 | Msa1073830 | 0.800901 | 1.159387e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073830 | MtrunA17_Chr7g0256851 | 98.261 | 115 | 2 | 0 | 1 | 115 | 1 | 115 | 1.32e-80 | 231 |
| Msa1073830 | MtrunA17_Chr3g0085831 | 50.476 | 105 | 48 | 3 | 1 | 102 | 1 | 104 | 9.21e-30 | 105 |
| Msa1073830 | MtrunA17_Chr5g0437861 | 44.595 | 74 | 37 | 2 | 1 | 71 | 1 | 73 | 1.29e-15 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073830 | AT2G41430.5 | 65.000 | 80 | 24 | 2 | 1 | 76 | 1 | 80 | 2.55e-30 | 106 |
| Msa1073830 | AT2G41430.4 | 65.000 | 80 | 24 | 2 | 1 | 76 | 1 | 80 | 2.55e-30 | 106 |
| Msa1073830 | AT2G41430.2 | 65.000 | 80 | 24 | 2 | 1 | 76 | 1 | 80 | 2.55e-30 | 106 |
| Msa1073830 | AT2G41430.1 | 65.000 | 80 | 24 | 2 | 1 | 76 | 1 | 80 | 2.55e-30 | 106 |
| Msa1073830 | AT2G41430.3 | 65.000 | 80 | 24 | 2 | 1 | 76 | 1 | 80 | 4.23e-30 | 104 |
| Msa1073830 | AT4G14270.1 | 57.407 | 54 | 23 | 0 | 2 | 55 | 3 | 56 | 2.36e-17 | 72.8 |
| Msa1073830 | AT4G14270.2 | 57.407 | 54 | 23 | 0 | 2 | 55 | 3 | 56 | 2.36e-17 | 72.8 |
Find 41 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGACAGGTAAGAAAGTTTA+TGG | 0.140300 | 7_2:-71468020 | None:intergenic |
| AAGGAATTACCAGAGAAATT+TGG | 0.241148 | 7_2:-71466739 | None:intergenic |
| TTTCTTACCTGTCTTCAAAA+TGG | 0.243639 | 7_2:+71468028 | Msa1073830:three_prime_UTR |
| ATTGGTCAATTGATTGCTTC+TGG | 0.249156 | 7_2:-71468127 | None:intergenic |
| TTCAAGATGGCATTAGTTTC+AGG | 0.269984 | 7_2:+71467263 | Msa1073830:exon |
| TTCCTTCTTACCAAAATCTA+TGG | 0.308472 | 7_2:+71467871 | Msa1073830:three_prime_UTR |
| CTTTCTGTAACTTCTTGTAT+AGG | 0.333956 | 7_2:+71467827 | Msa1073830:three_prime_UTR |
| GGAATGTAAAGTGGTGCATT+AGG | 0.338731 | 7_2:-71467305 | None:intergenic |
| GACGGTCTTGCCTTAGCTTT+CGG | 0.365977 | 7_2:+71467773 | Msa1073830:three_prime_UTR |
| CAAGGAGCAAAGAAATTTAC+TGG | 0.372256 | 7_2:+71467701 | Msa1073830:CDS |
| AGTAAGTTTATTATTACAAT+TGG | 0.386330 | 7_2:-71468145 | None:intergenic |
| GTCACCAGCTGCCACCATTC+CGG | 0.393504 | 7_2:-71467359 | None:intergenic |
| TGAAATGGTACCATGATTAC+TGG | 0.394842 | 7_2:+71467387 | Msa1073830:CDS |
| AGCCTTCATCATCATGTTGC+TGG | 0.408811 | 7_2:-71467415 | None:intergenic |
| ACCGTCGCATTCAGCGTCTA+TGG | 0.413218 | 7_2:-71467756 | None:intergenic |
| GAATGTAAAGTGGTGCATTA+GGG | 0.425842 | 7_2:-71467304 | None:intergenic |
| AGACAGGTAAGAAAGTTTAT+GGG | 0.447864 | 7_2:-71468019 | None:intergenic |
| TCTCACTAACCAAATTTCTC+TGG | 0.457260 | 7_2:+71466730 | Msa1073830:five_prime_UTR |
| TTCTCCGGAATGGTGGCAGC+TGG | 0.463269 | 7_2:+71467355 | Msa1073830:CDS |
| GCTTCTGGACATGTATTGTA+TGG | 0.492883 | 7_2:-71468112 | None:intergenic |
| TCGACATAGCGAAATGCAGC+TGG | 0.498421 | 7_2:-71467326 | None:intergenic |
| GCATCAAGATCAAACGCATC+AGG | 0.498917 | 7_2:-71467488 | None:intergenic |
| GCTGGCTAAGCCAGTAATCA+TGG | 0.519480 | 7_2:-71467397 | None:intergenic |
| ATTTACTGGATGAGCTAAAG+AGG | 0.519766 | 7_2:+71467715 | Msa1073830:exon |
| TGTAACTTCTTGTATAGGCA+AGG | 0.531546 | 7_2:+71467832 | Msa1073830:three_prime_UTR |
| TGACAGAACTCAGAAGTGTA+TGG | 0.537723 | 7_2:+71468077 | Msa1073830:three_prime_UTR |
| AGCTGGTGACAACACTGAAA+TGG | 0.546239 | 7_2:+71467372 | Msa1073830:CDS |
| AGCTGCATTTCGCTATGTCG+AGG | 0.547833 | 7_2:+71467328 | Msa1073830:CDS |
| GATGATGTAGATGAGTTTGA+CGG | 0.549584 | 7_2:+71467443 | Msa1073830:CDS |
| AGCCAGCAACATGATGATGA+AGG | 0.560493 | 7_2:+71467413 | Msa1073830:CDS |
| AGCTAAATAACCGAAAGCTA+AGG | 0.582950 | 7_2:-71467783 | None:intergenic |
| ACCATAGACGCTGAATGCGA+CGG | 0.583100 | 7_2:+71467755 | Msa1073830:three_prime_UTR |
| AGAGTTTATCAAGTCTTCTG+AGG | 0.595138 | 7_2:+71467544 | Msa1073830:CDS |
| ATCAAGTCTTCTGAGGCACA+AGG | 0.619098 | 7_2:+71467551 | Msa1073830:CDS |
| AGGGTGAAGGTGATTCAAGA+TGG | 0.622570 | 7_2:+71467250 | Msa1073830:exon |
| AAATCTATGGTAAAATAGAG+AGG | 0.627618 | 7_2:+71467884 | Msa1073830:three_prime_UTR |
| AAGATGGCATTAGTTTCAGG+AGG | 0.635369 | 7_2:+71467266 | Msa1073830:exon |
| TGATGCGTTTGATCTTGATG+CGG | 0.644823 | 7_2:+71467490 | Msa1073830:CDS |
| TATAACAGCTCTTACAACAT+CGG | 0.657333 | 7_2:-71467943 | None:intergenic |
| AATGCAGCTGGAATGTAAAG+TGG | 0.663728 | 7_2:-71467314 | None:intergenic |
| ACAGAAAGTTAAAACTGACA+TGG | 0.696360 | 7_2:-71467812 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATGGTTATTTTACAAT+TGG | - | chr7_2:71467018-71467037 | None:intergenic | 15.0% |
| !!! | AATTATGGTTATTTTACAAT+TGG | - | chr7_2:71467018-71467037 | None:intergenic | 15.0% |
| !!! | CATTGTTAATTGTTGATTAA+TGG | + | chr7_2:71467204-71467223 | Msa1073830:intron | 20.0% |
| !!! | CATTGTTAATTGTTGATTAA+TGG | + | chr7_2:71467204-71467223 | Msa1073830:intron | 20.0% |
| ! | TGAGTAATTGAAAGAGAAAA+AGG | - | chr7_2:71466761-71466780 | None:intergenic | 25.0% |
| ! | TCATGATGATTCATCAATTA+TGG | - | chr7_2:71467033-71467052 | None:intergenic | 25.0% |
| ! | TTGATTAATGGTGTAGATTA+AGG | + | chr7_2:71467216-71467235 | Msa1073830:intron | 25.0% |
| ! | AGATTAAGGAAAAAGTGATA+AGG | + | chr7_2:71467230-71467249 | Msa1073830:intron | 25.0% |
| ! | GATTAAGGAAAAAGTGATAA+GGG | + | chr7_2:71467231-71467250 | Msa1073830:intron | 25.0% |
| !! | AACTTTCCTCTGAAAAATAA+CGG | - | chr7_2:71467673-71467692 | None:intergenic | 25.0% |
| !! | CTCTATTTTACCATAGATTT+TGG | - | chr7_2:71467884-71467903 | None:intergenic | 25.0% |
| ! | AAATCTATGGTAAAATAGAG+AGG | + | chr7_2:71467884-71467903 | Msa1073830:three_prime_UTR | 25.0% |
| ! | TGAGTAATTGAAAGAGAAAA+AGG | - | chr7_2:71466761-71466780 | None:intergenic | 25.0% |
| ! | TCATGATGATTCATCAATTA+TGG | - | chr7_2:71467033-71467052 | None:intergenic | 25.0% |
| ! | TTGATTAATGGTGTAGATTA+AGG | + | chr7_2:71467216-71467235 | Msa1073830:intron | 25.0% |
| ! | AGATTAAGGAAAAAGTGATA+AGG | + | chr7_2:71467230-71467249 | Msa1073830:intron | 25.0% |
| ! | GATTAAGGAAAAAGTGATAA+GGG | + | chr7_2:71467231-71467250 | Msa1073830:intron | 25.0% |
| !! | AACTTTCCTCTGAAAAATAA+CGG | - | chr7_2:71467673-71467692 | None:intergenic | 25.0% |
| !! | CTCTATTTTACCATAGATTT+TGG | - | chr7_2:71467884-71467903 | None:intergenic | 25.0% |
| ! | AAATCTATGGTAAAATAGAG+AGG | + | chr7_2:71467884-71467903 | Msa1073830:three_prime_UTR | 25.0% |
| AAGGAATTACCAGAGAAATT+TGG | - | chr7_2:71466742-71466761 | None:intergenic | 30.0% | |
| !!! | AACATACCGTTATTTTTCAG+AGG | + | chr7_2:71467664-71467683 | Msa1073830:intron | 30.0% |
| !! | TTTTTCAGAGGAAAGTTTTG+TGG | + | chr7_2:71467676-71467695 | Msa1073830:intron | 30.0% |
| ACAGAAAGTTAAAACTGACA+TGG | - | chr7_2:71467815-71467834 | None:intergenic | 30.0% | |
| CTTTCTGTAACTTCTTGTAT+AGG | + | chr7_2:71467827-71467846 | Msa1073830:three_prime_UTR | 30.0% | |
| TTCCTTCTTACCAAAATCTA+TGG | + | chr7_2:71467871-71467890 | Msa1073830:three_prime_UTR | 30.0% | |
| !! | TACCATAGATTTTGGTAAGA+AGG | - | chr7_2:71467876-71467895 | None:intergenic | 30.0% |
| TATAACAGCTCTTACAACAT+CGG | - | chr7_2:71467946-71467965 | None:intergenic | 30.0% | |
| AGACAGGTAAGAAAGTTTAT+GGG | - | chr7_2:71468022-71468041 | None:intergenic | 30.0% | |
| AAGACAGGTAAGAAAGTTTA+TGG | - | chr7_2:71468023-71468042 | None:intergenic | 30.0% | |
| TTTCTTACCTGTCTTCAAAA+TGG | + | chr7_2:71468028-71468047 | Msa1073830:three_prime_UTR | 30.0% | |
| AAGGAATTACCAGAGAAATT+TGG | - | chr7_2:71466742-71466761 | None:intergenic | 30.0% | |
| !!! | AACATACCGTTATTTTTCAG+AGG | + | chr7_2:71467664-71467683 | Msa1073830:intron | 30.0% |
| !! | TTTTTCAGAGGAAAGTTTTG+TGG | + | chr7_2:71467676-71467695 | Msa1073830:intron | 30.0% |
| ACAGAAAGTTAAAACTGACA+TGG | - | chr7_2:71467815-71467834 | None:intergenic | 30.0% | |
| CTTTCTGTAACTTCTTGTAT+AGG | + | chr7_2:71467827-71467846 | Msa1073830:three_prime_UTR | 30.0% | |
| TTCCTTCTTACCAAAATCTA+TGG | + | chr7_2:71467871-71467890 | Msa1073830:three_prime_UTR | 30.0% | |
| !! | TACCATAGATTTTGGTAAGA+AGG | - | chr7_2:71467876-71467895 | None:intergenic | 30.0% |
| TATAACAGCTCTTACAACAT+CGG | - | chr7_2:71467946-71467965 | None:intergenic | 30.0% | |
| AGACAGGTAAGAAAGTTTAT+GGG | - | chr7_2:71468022-71468041 | None:intergenic | 30.0% | |
| AAGACAGGTAAGAAAGTTTA+TGG | - | chr7_2:71468023-71468042 | None:intergenic | 30.0% | |
| TTTCTTACCTGTCTTCAAAA+TGG | + | chr7_2:71468028-71468047 | Msa1073830:three_prime_UTR | 30.0% | |
| TCTCACTAACCAAATTTCTC+TGG | + | chr7_2:71466730-71466749 | Msa1073830:five_prime_UTR | 35.0% | |
| ! | TTCAAGATGGCATTAGTTTC+AGG | + | chr7_2:71467263-71467282 | Msa1073830:exon | 35.0% |
| GAATGTAAAGTGGTGCATTA+GGG | - | chr7_2:71467307-71467326 | None:intergenic | 35.0% | |
| TGAAATGGTACCATGATTAC+TGG | + | chr7_2:71467387-71467406 | Msa1073830:CDS | 35.0% | |
| GATGATGTAGATGAGTTTGA+CGG | + | chr7_2:71467443-71467462 | Msa1073830:CDS | 35.0% | |
| AGAGTTTATCAAGTCTTCTG+AGG | + | chr7_2:71467544-71467563 | Msa1073830:CDS | 35.0% | |
| CAAGGAGCAAAGAAATTTAC+TGG | + | chr7_2:71467701-71467720 | Msa1073830:CDS | 35.0% | |
| ATTTACTGGATGAGCTAAAG+AGG | + | chr7_2:71467715-71467734 | Msa1073830:exon | 35.0% | |
| AGCTAAATAACCGAAAGCTA+AGG | - | chr7_2:71467786-71467805 | None:intergenic | 35.0% | |
| TGTAACTTCTTGTATAGGCA+AGG | + | chr7_2:71467832-71467851 | Msa1073830:three_prime_UTR | 35.0% | |
| !! | AATGCATCCATTTTGAAGAC+AGG | - | chr7_2:71468038-71468057 | None:intergenic | 35.0% |
| ATTGGTCAATTGATTGCTTC+TGG | - | chr7_2:71468130-71468149 | None:intergenic | 35.0% | |
| TCTCACTAACCAAATTTCTC+TGG | + | chr7_2:71466730-71466749 | Msa1073830:five_prime_UTR | 35.0% | |
| ! | TTCAAGATGGCATTAGTTTC+AGG | + | chr7_2:71467263-71467282 | Msa1073830:exon | 35.0% |
| GAATGTAAAGTGGTGCATTA+GGG | - | chr7_2:71467307-71467326 | None:intergenic | 35.0% | |
| TGAAATGGTACCATGATTAC+TGG | + | chr7_2:71467387-71467406 | Msa1073830:CDS | 35.0% | |
| GATGATGTAGATGAGTTTGA+CGG | + | chr7_2:71467443-71467462 | Msa1073830:CDS | 35.0% | |
| AGAGTTTATCAAGTCTTCTG+AGG | + | chr7_2:71467544-71467563 | Msa1073830:CDS | 35.0% | |
| CAAGGAGCAAAGAAATTTAC+TGG | + | chr7_2:71467701-71467720 | Msa1073830:CDS | 35.0% | |
| ATTTACTGGATGAGCTAAAG+AGG | + | chr7_2:71467715-71467734 | Msa1073830:exon | 35.0% | |
| AGCTAAATAACCGAAAGCTA+AGG | - | chr7_2:71467786-71467805 | None:intergenic | 35.0% | |
| TGTAACTTCTTGTATAGGCA+AGG | + | chr7_2:71467832-71467851 | Msa1073830:three_prime_UTR | 35.0% | |
| !! | AATGCATCCATTTTGAAGAC+AGG | - | chr7_2:71468038-71468057 | None:intergenic | 35.0% |
| ATTGGTCAATTGATTGCTTC+TGG | - | chr7_2:71468130-71468149 | None:intergenic | 35.0% | |
| TGACTCGTTTGAGTCAAGAT+CGG | - | chr7_2:71466913-71466932 | None:intergenic | 40.0% | |
| GGAAAAAGTGATAAGGGTGA+AGG | + | chr7_2:71467237-71467256 | Msa1073830:five_prime_UTR | 40.0% | |
| ! | AAGATGGCATTAGTTTCAGG+AGG | + | chr7_2:71467266-71467285 | Msa1073830:exon | 40.0% |
| GGAATGTAAAGTGGTGCATT+AGG | - | chr7_2:71467308-71467327 | None:intergenic | 40.0% | |
| AATGCAGCTGGAATGTAAAG+TGG | - | chr7_2:71467317-71467336 | None:intergenic | 40.0% | |
| ! | CTATGTCGAGGATTTTTCTC+CGG | + | chr7_2:71467340-71467359 | Msa1073830:CDS | 40.0% |
| TGATGCGTTTGATCTTGATG+CGG | + | chr7_2:71467490-71467509 | Msa1073830:CDS | 40.0% | |
| ! | TGACAGAACTCAGAAGTGTA+TGG | + | chr7_2:71468077-71468096 | Msa1073830:three_prime_UTR | 40.0% |
| GCTTCTGGACATGTATTGTA+TGG | - | chr7_2:71468115-71468134 | None:intergenic | 40.0% | |
| TGACTCGTTTGAGTCAAGAT+CGG | - | chr7_2:71466913-71466932 | None:intergenic | 40.0% | |
| GGAAAAAGTGATAAGGGTGA+AGG | + | chr7_2:71467237-71467256 | Msa1073830:five_prime_UTR | 40.0% | |
| ! | AAGATGGCATTAGTTTCAGG+AGG | + | chr7_2:71467266-71467285 | Msa1073830:exon | 40.0% |
| GGAATGTAAAGTGGTGCATT+AGG | - | chr7_2:71467308-71467327 | None:intergenic | 40.0% | |
| AATGCAGCTGGAATGTAAAG+TGG | - | chr7_2:71467317-71467336 | None:intergenic | 40.0% | |
| ! | CTATGTCGAGGATTTTTCTC+CGG | + | chr7_2:71467340-71467359 | Msa1073830:CDS | 40.0% |
| TGATGCGTTTGATCTTGATG+CGG | + | chr7_2:71467490-71467509 | Msa1073830:CDS | 40.0% | |
| ! | TGACAGAACTCAGAAGTGTA+TGG | + | chr7_2:71468077-71468096 | Msa1073830:three_prime_UTR | 40.0% |
| GCTTCTGGACATGTATTGTA+TGG | - | chr7_2:71468115-71468134 | None:intergenic | 40.0% | |
| AGGGTGAAGGTGATTCAAGA+TGG | + | chr7_2:71467250-71467269 | Msa1073830:exon | 45.0% | |
| ! | TCGAGGATTTTTCTCCGGAA+TGG | + | chr7_2:71467345-71467364 | Msa1073830:CDS | 45.0% |
| ! | AGGATTTTTCTCCGGAATGG+TGG | + | chr7_2:71467348-71467367 | Msa1073830:CDS | 45.0% |
| AGCTGGTGACAACACTGAAA+TGG | + | chr7_2:71467372-71467391 | Msa1073830:CDS | 45.0% | |
| ! | AGCCAGCAACATGATGATGA+AGG | + | chr7_2:71467413-71467432 | Msa1073830:CDS | 45.0% |
| AGCCTTCATCATCATGTTGC+TGG | - | chr7_2:71467418-71467437 | None:intergenic | 45.0% | |
| GCATCAAGATCAAACGCATC+AGG | - | chr7_2:71467491-71467510 | None:intergenic | 45.0% | |
| !! | ATCAAGTCTTCTGAGGCACA+AGG | + | chr7_2:71467551-71467570 | Msa1073830:CDS | 45.0% |
| !! | GAGGAAAGTTTTGTGGAGCA+AGG | + | chr7_2:71467683-71467702 | Msa1073830:intron | 45.0% |
| AGGGTGAAGGTGATTCAAGA+TGG | + | chr7_2:71467250-71467269 | Msa1073830:exon | 45.0% | |
| ! | TCGAGGATTTTTCTCCGGAA+TGG | + | chr7_2:71467345-71467364 | Msa1073830:CDS | 45.0% |
| ! | AGGATTTTTCTCCGGAATGG+TGG | + | chr7_2:71467348-71467367 | Msa1073830:CDS | 45.0% |
| AGCTGGTGACAACACTGAAA+TGG | + | chr7_2:71467372-71467391 | Msa1073830:CDS | 45.0% | |
| ! | AGCCAGCAACATGATGATGA+AGG | + | chr7_2:71467413-71467432 | Msa1073830:CDS | 45.0% |
| AGCCTTCATCATCATGTTGC+TGG | - | chr7_2:71467418-71467437 | None:intergenic | 45.0% | |
| GCATCAAGATCAAACGCATC+AGG | - | chr7_2:71467491-71467510 | None:intergenic | 45.0% | |
| !! | ATCAAGTCTTCTGAGGCACA+AGG | + | chr7_2:71467551-71467570 | Msa1073830:CDS | 45.0% |
| !! | GAGGAAAGTTTTGTGGAGCA+AGG | + | chr7_2:71467683-71467702 | Msa1073830:intron | 45.0% |
| !! | GTTAAAATTAAAATTAAAAT+CGG | - | chr7_2:71466860-71466879 | None:intergenic | 5.0% |
| !! | GTTAAAATTAAAATTAAAAT+CGG | - | chr7_2:71466860-71466879 | None:intergenic | 5.0% |
| TCGACATAGCGAAATGCAGC+TGG | - | chr7_2:71467329-71467348 | None:intergenic | 50.0% | |
| AGCTGCATTTCGCTATGTCG+AGG | + | chr7_2:71467328-71467347 | Msa1073830:CDS | 50.0% | |
| GCTGGCTAAGCCAGTAATCA+TGG | - | chr7_2:71467400-71467419 | None:intergenic | 50.0% | |
| ACCATAGACGCTGAATGCGA+CGG | + | chr7_2:71467755-71467774 | Msa1073830:three_prime_UTR | 50.0% | |
| ! | GACGGTCTTGCCTTAGCTTT+CGG | + | chr7_2:71467773-71467792 | Msa1073830:three_prime_UTR | 50.0% |
| TCGACATAGCGAAATGCAGC+TGG | - | chr7_2:71467329-71467348 | None:intergenic | 50.0% | |
| AGCTGCATTTCGCTATGTCG+AGG | + | chr7_2:71467328-71467347 | Msa1073830:CDS | 50.0% | |
| GCTGGCTAAGCCAGTAATCA+TGG | - | chr7_2:71467400-71467419 | None:intergenic | 50.0% | |
| ACCATAGACGCTGAATGCGA+CGG | + | chr7_2:71467755-71467774 | Msa1073830:three_prime_UTR | 50.0% | |
| ! | GACGGTCTTGCCTTAGCTTT+CGG | + | chr7_2:71467773-71467792 | Msa1073830:three_prime_UTR | 50.0% |
| ACCGTCGCATTCAGCGTCTA+TGG | - | chr7_2:71467759-71467778 | None:intergenic | 55.0% | |
| ACCGTCGCATTCAGCGTCTA+TGG | - | chr7_2:71467759-71467778 | None:intergenic | 55.0% | |
| TTCTCCGGAATGGTGGCAGC+TGG | + | chr7_2:71467355-71467374 | Msa1073830:CDS | 60.0% | |
| GTCACCAGCTGCCACCATTC+CGG | - | chr7_2:71467362-71467381 | None:intergenic | 60.0% | |
| TTCTCCGGAATGGTGGCAGC+TGG | + | chr7_2:71467355-71467374 | Msa1073830:CDS | 60.0% | |
| GTCACCAGCTGCCACCATTC+CGG | - | chr7_2:71467362-71467381 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 71466716 | 71468165 | 71466716 | ID=Msa1073830;Name=Msa1073830 |
| chr7_2 | mRNA | 71466716 | 71468165 | 71466716 | ID=Msa1073830-mRNA-1;Parent=Msa1073830;Name=Msa1073830-mRNA-1;_AED=0.00;_eAED=0.00;_QI=73|1|1|1|0.5|0.33|3|438|115 |
| chr7_2 | exon | 71466716 | 71466751 | 71466716 | ID=Msa1073830-mRNA-1:exon:16174;Parent=Msa1073830-mRNA-1 |
| chr7_2 | exon | 71467232 | 71467572 | 71467232 | ID=Msa1073830-mRNA-1:exon:16175;Parent=Msa1073830-mRNA-1 |
| chr7_2 | exon | 71467684 | 71468165 | 71467684 | ID=Msa1073830-mRNA-1:exon:16176;Parent=Msa1073830-mRNA-1 |
| chr7_2 | five_prime_UTR | 71466716 | 71466751 | 71466716 | ID=Msa1073830-mRNA-1:five_prime_utr;Parent=Msa1073830-mRNA-1 |
| chr7_2 | five_prime_UTR | 71467232 | 71467268 | 71467232 | ID=Msa1073830-mRNA-1:five_prime_utr;Parent=Msa1073830-mRNA-1 |
| chr7_2 | CDS | 71467269 | 71467572 | 71467269 | ID=Msa1073830-mRNA-1:cds;Parent=Msa1073830-mRNA-1 |
| chr7_2 | CDS | 71467684 | 71467727 | 71467684 | ID=Msa1073830-mRNA-1:cds;Parent=Msa1073830-mRNA-1 |
| chr7_2 | three_prime_UTR | 71467728 | 71468165 | 71467728 | ID=Msa1073830-mRNA-1:three_prime_utr;Parent=Msa1073830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
