Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0484730 | XP_003602519.1 | 100.000 | 245 | 0 | 0 | 1 | 245 | 1 | 245 | 1.84e-171 | 482 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0484730 | sp|Q99JH1|RP25L_MOUSE | 35.294 | 136 | 79 | 3 | 1 | 127 | 1 | 136 | 6.24e-18 | 81.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0484730 | G7JAD8 | 100.000 | 245 | 0 | 0 | 1 | 245 | 1 | 245 | 8.77e-172 | 482 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0128330 | Msa0484730 | 0.818520 | 1.878206e-52 | -8.615850e-47 |
| Msa0128750 | Msa0484730 | 0.834025 | 3.804334e-56 | -8.615850e-47 |
| Msa0167860 | Msa0484730 | 0.800161 | 1.641231e-48 | -8.615850e-47 |
| Msa0174580 | Msa0484730 | 0.819974 | 8.758984e-53 | -8.615850e-47 |
| Msa0191450 | Msa0484730 | 0.813846 | 2.081531e-51 | -8.615850e-47 |
| Msa0191550 | Msa0484730 | 0.801114 | 1.048885e-48 | -8.615850e-47 |
| Msa0194940 | Msa0484730 | 0.843252 | 1.571070e-58 | -8.615850e-47 |
| Msa0436750 | Msa0484730 | 0.972399 | 1.056590e-134 | -8.615850e-47 |
| Msa0473570 | Msa0484730 | 0.979761 | 1.107525e-148 | -8.615850e-47 |
| Msa0481520 | Msa0484730 | 0.836975 | 6.828981e-57 | -8.615850e-47 |
| Msa0315430 | Msa0484730 | 0.818370 | 2.030987e-52 | -8.615850e-47 |
| Msa0484730 | Msa0529900 | 0.801914 | 7.191273e-49 | -8.615850e-47 |
| Msa0484730 | Msa0579830 | 0.836336 | 9.933258e-57 | -8.615850e-47 |
| Msa0484730 | Msa0649890 | 0.839036 | 2.014071e-57 | -8.615850e-47 |
| Msa0484730 | Msa0822580 | 0.813510 | 2.468344e-51 | -8.615850e-47 |
| Msa0484730 | Msa0838070 | 0.820352 | 7.176535e-53 | -8.615850e-47 |
| Msa0484730 | Msa1037290 | 0.822638 | 2.128049e-53 | -8.615850e-47 |
| Msa0484730 | Msa1082170 | 0.807845 | 4.143123e-50 | -8.615850e-47 |
| Msa0484730 | Msa1126520 | 0.840773 | 7.104412e-58 | -8.615850e-47 |
| Msa0484730 | Msa1164150 | 0.830864 | 2.309967e-55 | -8.615850e-47 |
| Msa0484730 | Msa1295150 | 0.801164 | 1.024293e-48 | -8.615850e-47 |
| Msa0484730 | Msa1311400 | 0.827420 | 1.579729e-54 | -8.615850e-47 |
| Msa0484730 | Msa1368920 | 0.822221 | 2.659650e-53 | -8.615850e-47 |
| Msa0484730 | Msa1374480 | 0.984432 | 1.526653e-160 | -8.615850e-47 |
| Msa0484730 | Msa1446410 | 0.810221 | 1.283703e-50 | -8.615850e-47 |
| Msa0484730 | Msa1463570 | 0.825240 | 5.220664e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0484730 | MtrunA17_Chr3g0129471 | 100.000 | 217 | 0 | 0 | 29 | 245 | 1 | 217 | 2.40e-153 | 425 |
| Msa0484730 | MtrunA17_Chr3g0129501 | 94.709 | 189 | 10 | 0 | 29 | 217 | 1 | 189 | 3.49e-95 | 278 |
| Msa0484730 | MtrunA17_Chr3g0129481 | 92.147 | 191 | 12 | 2 | 29 | 217 | 1 | 190 | 3.95e-81 | 242 |
| Msa0484730 | MtrunA17_Chr7g0237631 | 66.901 | 142 | 47 | 0 | 1 | 142 | 1 | 142 | 5.72e-64 | 203 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0484730 | AT1G76010.2 | 77.027 | 148 | 33 | 1 | 1 | 147 | 1 | 148 | 4.70e-74 | 229 |
| Msa0484730 | AT1G76010.1 | 77.027 | 148 | 33 | 1 | 1 | 147 | 1 | 148 | 4.70e-74 | 229 |
| Msa0484730 | AT1G20220.1 | 72.973 | 148 | 39 | 1 | 1 | 147 | 1 | 148 | 3.86e-70 | 218 |
| Msa0484730 | AT3G07030.2 | 65.926 | 135 | 46 | 0 | 1 | 135 | 1 | 135 | 2.78e-59 | 192 |
| Msa0484730 | AT3G07030.3 | 65.926 | 135 | 46 | 0 | 1 | 135 | 1 | 135 | 2.78e-59 | 192 |
| Msa0484730 | AT3G07030.4 | 65.926 | 135 | 46 | 0 | 1 | 135 | 1 | 135 | 3.37e-59 | 192 |
| Msa0484730 | AT3G07030.1 | 65.926 | 135 | 46 | 0 | 1 | 135 | 1 | 135 | 8.44e-59 | 191 |
| Msa0484730 | AT3G07030.5 | 65.926 | 135 | 46 | 0 | 1 | 135 | 1 | 135 | 9.97e-59 | 192 |
Find 125 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCTTCATATTCATTTAA+AGG | 0.086684 | 3_4:-2250837 | None:intergenic |
| GTGCATGGGGTCGTGCTTTC+CGG | 0.114627 | 3_4:+2251436 | Msa0484730:CDS |
| CACAAAATTGGAATATTTAT+AGG | 0.238360 | 3_4:-2252196 | None:intergenic |
| CGGCCATGTTCCTGCAGTTT+TGG | 0.243075 | 3_4:+2252021 | Msa0484730:three_prime_UTR |
| AGGAGAATAAAACACAAAAT+TGG | 0.250041 | 3_4:-2252208 | None:intergenic |
| TGAGTTGAGTTGACAGGTTT+TGG | 0.270816 | 3_4:-2249079 | None:intergenic |
| CTGCATCAGAACACTATTAT+TGG | 0.280228 | 3_4:+2249959 | Msa0484730:CDS |
| AGCGAGGGGCTGGGTGGCTA+TGG | 0.298249 | 3_4:-2249130 | None:intergenic |
| ACAAAATTGGAATATTTATA+GGG | 0.308857 | 3_4:-2252195 | None:intergenic |
| GCAGAGGGCGTGGCCGTGCA+TGG | 0.313343 | 3_4:+2251421 | Msa0484730:CDS |
| TGCATGGGGTCGTGCTTTCC+GGG | 0.322620 | 3_4:+2251437 | Msa0484730:CDS |
| CGTGGAAGGGGCAGGGGTAG+AGG | 0.333283 | 3_4:+2250995 | Msa0484730:CDS |
| CAGAGGGCGTGGCCGTGCAT+GGG | 0.335065 | 3_4:+2251422 | Msa0484730:CDS |
| CGTGGCCGTGGAAGGGGCAG+GGG | 0.338950 | 3_4:+2250989 | Msa0484730:CDS |
| GACGATTACTGAGCTAATTA+AGG | 0.344294 | 3_4:+2249829 | Msa0484730:CDS |
| AGGGGCAGGGGTAGAGGTAG+AGG | 0.349329 | 3_4:+2251001 | Msa0484730:CDS |
| GTTGATAGGGCTATCTGCCT+TGG | 0.366788 | 3_4:-2249318 | None:intergenic |
| GCGAGGGGCTGGGTGGCTAT+GGG | 0.367507 | 3_4:-2249129 | None:intergenic |
| CTCTTCCCCTTCCACGACCT+TGG | 0.370286 | 3_4:-2251886 | None:intergenic |
| TGCTTACCGCGTGGGGCAGG+TGG | 0.371445 | 3_4:-2251522 | None:intergenic |
| CTCTCTCATGCTTACCGCGT+GGG | 0.372765 | 3_4:-2251530 | None:intergenic |
| GCTATGGTGCCCAGCCGGTT+GGG | 0.375717 | 3_4:+2251472 | Msa0484730:CDS |
| GGCGTGGCCGTGGAAGGGGC+AGG | 0.382595 | 3_4:+2250987 | Msa0484730:CDS |
| ATGGAAGAGAGCGAGGGGCT+GGG | 0.406409 | 3_4:-2249139 | None:intergenic |
| CAGATATCAACCTCCTCTTC+CGG | 0.410668 | 3_4:+2250800 | Msa0484730:intron |
| GGCTATGGTGCCCAGCCGGT+TGG | 0.410845 | 3_4:+2251471 | Msa0484730:CDS |
| TTGATAGGGCTATCTGCCTT+GGG | 0.411012 | 3_4:-2249317 | None:intergenic |
| TCATGCTTACCGCGTGGGGC+AGG | 0.415819 | 3_4:-2251525 | None:intergenic |
| GCTTACCGCGTGGGGCAGGT+GGG | 0.418616 | 3_4:-2251521 | None:intergenic |
| CGTGGAAGGGGAAGAGGCCG+TGG | 0.425270 | 3_4:+2251893 | Msa0484730:CDS |
| GCTCGCCAAGGATGCGAGGA+AGG | 0.425647 | 3_4:+2250963 | Msa0484730:CDS |
| GATGGAAGAGAGCGAGGGGC+TGG | 0.425790 | 3_4:-2249140 | None:intergenic |
| CAAGGTCGTGGAAGGGGAAG+AGG | 0.427428 | 3_4:+2251887 | Msa0484730:CDS |
| TCTTTGTAGGAATGTACAAT+GGG | 0.439627 | 3_4:+2251352 | Msa0484730:intron |
| CGAGGGGCTGGGTGGCTATG+GGG | 0.442196 | 3_4:-2249128 | None:intergenic |
| GGCTATGGTGGCAGAGGGCG+TGG | 0.451114 | 3_4:+2251411 | Msa0484730:CDS |
| GCGTGGCCGTGGAAGGGGCA+GGG | 0.454451 | 3_4:+2250988 | Msa0484730:CDS |
| AGGGGAAGAGGCCGTGGACG+TGG | 0.457525 | 3_4:+2251899 | Msa0484730:CDS |
| TCGCCAAGGATGCGAGGAAG+GGG | 0.461675 | 3_4:+2250965 | Msa0484730:CDS |
| CGTGGACGTGGTCGTGATGC+TGG | 0.462697 | 3_4:+2251911 | Msa0484730:CDS |
| TATGATGGTGGACGTGGCTA+TGG | 0.467843 | 3_4:+2251396 | Msa0484730:CDS |
| GGACGTGGCTATGGTGGCAG+AGG | 0.470972 | 3_4:+2251405 | Msa0484730:CDS |
| CTTACCGCGTGGGGCAGGTG+GGG | 0.471319 | 3_4:-2251520 | None:intergenic |
| CTCGCCAAGGATGCGAGGAA+GGG | 0.475876 | 3_4:+2250964 | Msa0484730:CDS |
| GTTTCTCATCCTTCCTTGAG+TGG | 0.479166 | 3_4:-2249360 | None:intergenic |
| TTACTTGCAGGCCAAGGTCG+TGG | 0.495476 | 3_4:+2251875 | Msa0484730:intron |
| TACTTTGTCAAAGAAAGAGC+TGG | 0.498781 | 3_4:+2250159 | Msa0484730:CDS |
| TGTCATAATACCCAACCGGC+TGG | 0.498971 | 3_4:-2251482 | None:intergenic |
| GCAGGCCAAGGTCGTGGAAG+GGG | 0.500455 | 3_4:+2251881 | Msa0484730:intron |
| GTTTGTTAATTCAGATGGAT+AGG | 0.501024 | 3_4:+2249276 | Msa0484730:intron |
| TTCTTTGTAGGAATGTACAA+TGG | 0.504434 | 3_4:+2251351 | Msa0484730:intron |
| CGGGGACGAGGACGTGGCTA+TGG | 0.506197 | 3_4:+2251456 | Msa0484730:CDS |
| CTCTACCCCTGCCCCTTCCA+CGG | 0.508387 | 3_4:-2250994 | None:intergenic |
| CAATGAAAACATACGGAAGA+AGG | 0.509927 | 3_4:-2250024 | None:intergenic |
| GCTTTCCGGGGACGAGGACG+TGG | 0.517005 | 3_4:+2251450 | Msa0484730:CDS |
| GAAATCGTTCTCAAAGCAAT+GGG | 0.517050 | 3_4:+2249785 | Msa0484730:CDS |
| TTTACTTGATCAGCCGGAAG+AGG | 0.519336 | 3_4:-2250813 | None:intergenic |
| TTAAAATTATAAATGTTACA+AGG | 0.524255 | 3_4:-2252058 | None:intergenic |
| CCATTGTCATAATACCCAAC+CGG | 0.524799 | 3_4:-2251486 | None:intergenic |
| GGTCGTGCTTTCCGGGGACG+AGG | 0.525875 | 3_4:+2251444 | Msa0484730:CDS |
| TGGTTTCAATTTGAGGCCGA+GGG | 0.528432 | 3_4:-2249036 | None:intergenic |
| ATTTGAGTCGTTCAGTGTTG+CGG | 0.530588 | 3_4:+2252001 | Msa0484730:three_prime_UTR |
| GAATATGGTGATGGTTATGA+TGG | 0.530946 | 3_4:+2251381 | Msa0484730:CDS |
| CATAGCCACGTCCTCGTCCC+CGG | 0.531366 | 3_4:-2251455 | None:intergenic |
| GTGGTTTCAATTTGAGGCCG+AGG | 0.533096 | 3_4:-2249037 | None:intergenic |
| ACGTGGCTATGGTGCCCAGC+CGG | 0.540009 | 3_4:+2251467 | Msa0484730:CDS |
| AGAGGGCGTGGCCGTGCATG+GGG | 0.540930 | 3_4:+2251423 | Msa0484730:CDS |
| AGCAGCTGCTTAGTTAGAAG+AGG | 0.543321 | 3_4:+2251940 | Msa0484730:exon |
| TCACTCACGCTCAACACAAA+CGG | 0.546528 | 3_4:+2249163 | Msa0484730:five_prime_UTR |
| GAGCTGGATACATCCTCCAC+AGG | 0.550506 | 3_4:+2250175 | Msa0484730:CDS |
| TTGCAGGCCAAGGTCGTGGA+AGG | 0.551070 | 3_4:+2251879 | Msa0484730:intron |
| AGAAATCGTTCTCAAAGCAA+TGG | 0.552556 | 3_4:+2249784 | Msa0484730:CDS |
| TAAAATTATAAATGTTACAA+GGG | 0.558311 | 3_4:-2252057 | None:intergenic |
| GTCATAATACCCAACCGGCT+GGG | 0.558897 | 3_4:-2251481 | None:intergenic |
| GGAAAGCACGACCCCATGCA+CGG | 0.559235 | 3_4:-2251434 | None:intergenic |
| AACTACAAAACCAAAACTGC+AGG | 0.559355 | 3_4:-2252031 | None:intergenic |
| ACTCTGTGAGTTGAGTTGAC+AGG | 0.560519 | 3_4:-2249085 | None:intergenic |
| CAACTGATATAACTGACACA+TGG | 0.565866 | 3_4:+2249984 | Msa0484730:CDS |
| GACGTGGCTATGGTGGCAGA+GGG | 0.566506 | 3_4:+2251406 | Msa0484730:CDS |
| GAGTGAGATGGAAGAGAGCG+AGG | 0.567145 | 3_4:-2249146 | None:intergenic |
| AAAATTATAAATGTTACAAG+GGG | 0.579415 | 3_4:-2252056 | None:intergenic |
| ACATGGGAACCACTTGAAGA+AGG | 0.580775 | 3_4:+2250001 | Msa0484730:CDS |
| GGAAGAAGGCCTTCTTCAAG+TGG | 0.583553 | 3_4:-2250010 | None:intergenic |
| ACCTTTAAATGAATATGAAG+AGG | 0.587328 | 3_4:+2250836 | Msa0484730:CDS |
| GATGGTTATGATGGTGGACG+TGG | 0.587716 | 3_4:+2251390 | Msa0484730:CDS |
| CGCCAAGGATGCGAGGAAGG+GGG | 0.588165 | 3_4:+2250966 | Msa0484730:CDS |
| TTAAATGAATATGAAGAGGA+AGG | 0.589261 | 3_4:+2250840 | Msa0484730:CDS |
| TCCTTCCTTGAGTGGTAATG+CGG | 0.591117 | 3_4:-2249352 | None:intergenic |
| ACTTGATCAGCCGGAAGAGG+AGG | 0.591207 | 3_4:-2250810 | None:intergenic |
| TATGGTGATGGTTATGATGG+TGG | 0.591644 | 3_4:+2251384 | Msa0484730:CDS |
| GCAGCTGCTTAGTTAGAAGA+GGG | 0.593490 | 3_4:+2251941 | Msa0484730:exon |
| GATGGTGGACGTGGCTATGG+TGG | 0.594069 | 3_4:+2251399 | Msa0484730:CDS |
| TGTGTTGAGCGTGAGTGAGA+TGG | 0.600798 | 3_4:-2249158 | None:intergenic |
| AACTGATATAACTGACACAT+GGG | 0.600887 | 3_4:+2249985 | Msa0484730:CDS |
| AAACCAAAACTGCAGGAACA+TGG | 0.602157 | 3_4:-2252024 | None:intergenic |
| AAATAAACAAATAAGCAAAG+AGG | 0.602755 | 3_4:-2251967 | None:intergenic |
| TGCAGGCCAAGGTCGTGGAA+GGG | 0.605445 | 3_4:+2251880 | Msa0484730:intron |
| AATTATAAATGTTACAAGGG+GGG | 0.606874 | 3_4:-2252054 | None:intergenic |
| GAGATCCGCATTACCACTCA+AGG | 0.607382 | 3_4:+2249347 | Msa0484730:CDS |
| GAAGAGAGCGAGGGGCTGGG+TGG | 0.607690 | 3_4:-2249136 | None:intergenic |
| TTCAGATGGATAGGTATCAG+AGG | 0.607820 | 3_4:+2249285 | Msa0484730:intron |
| TCAGATGGATAGGTATCAGA+GGG | 0.613414 | 3_4:+2249286 | Msa0484730:intron |
| TCTCTCATGCTTACCGCGTG+GGG | 0.614307 | 3_4:-2251529 | None:intergenic |
| CCGGTTGGGTATTATGACAA+TGG | 0.619666 | 3_4:+2251486 | Msa0484730:CDS |
| AATGAATATGAAGAGGAAGG+AGG | 0.621567 | 3_4:+2250843 | Msa0484730:CDS |
| GCATGGGGTCGTGCTTTCCG+GGG | 0.624471 | 3_4:+2251438 | Msa0484730:CDS |
| AGTGAGATGGAAGAGAGCGA+GGG | 0.624797 | 3_4:-2249145 | None:intergenic |
| CTAACTAAGCAGCTGCTACA+CGG | 0.626764 | 3_4:-2251934 | None:intergenic |
| GATACACAGAAGGCTCGCCA+AGG | 0.633168 | 3_4:+2250951 | Msa0484730:intron |
| TCCGCATTACCACTCAAGGA+AGG | 0.635560 | 3_4:+2249351 | Msa0484730:CDS |
| CAGCATCACGACCACGTCCA+CGG | 0.637764 | 3_4:-2251910 | None:intergenic |
| GAAGGCTCGCCAAGGATGCG+AGG | 0.639147 | 3_4:+2250959 | Msa0484730:intron |
| GTTTCAATTTGAGGCCGAGG+GGG | 0.642243 | 3_4:-2249034 | None:intergenic |
| GTGAGATGGAAGAGAGCGAG+GGG | 0.643963 | 3_4:-2249144 | None:intergenic |
| TGAAAGTTCATACCCTGTGG+AGG | 0.649730 | 3_4:-2250188 | None:intergenic |
| GAGAGAAAGAGATACACGCG+AGG | 0.650816 | 3_4:-2249010 | None:intergenic |
| TTTGTAGGAATGTACAATGG+GGG | 0.656698 | 3_4:+2251354 | Msa0484730:intron |
| GATGGATAGGTATCAGAGGG+TGG | 0.667174 | 3_4:+2249289 | Msa0484730:intron |
| AAATTATAAATGTTACAAGG+GGG | 0.667194 | 3_4:-2252055 | None:intergenic |
| GGTTTCAATTTGAGGCCGAG+GGG | 0.668422 | 3_4:-2249035 | None:intergenic |
| AGCTGGATACATCCTCCACA+GGG | 0.668533 | 3_4:+2250176 | Msa0484730:CDS |
| TCAGAGGGTGGAGAAACCCA+AGG | 0.675762 | 3_4:+2249301 | Msa0484730:CDS |
| CTTTGTAGGAATGTACAATG+GGG | 0.692917 | 3_4:+2251353 | Msa0484730:intron |
| AGAGAAAGAGATACACGCGA+GGG | 0.694622 | 3_4:-2249009 | None:intergenic |
| GATGCCCCACCTGCCCCACG+CGG | 0.736589 | 3_4:+2251516 | Msa0484730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAAAAAAATCACT+CGG | - | chr3_4:2249599-2249618 | None:intergenic | 10.0% |
| !! | AAAGGAAATTAAATAATTAT+AGG | + | chr3_4:2251143-2251162 | Msa0484730:intron | 10.0% |
| !! | AAGGAAATTAAATAATTATA+GGG | + | chr3_4:2251144-2251163 | Msa0484730:intron | 10.0% |
| !!! | CTTATTTGTTTATTTTATTT+GGG | + | chr3_4:2251975-2251994 | Msa0484730:three_prime_UTR | 10.0% |
| !! | TAAAATTATAAATGTTACAA+GGG | - | chr3_4:2252060-2252079 | None:intergenic | 10.0% |
| !! | TTAAAATTATAAATGTTACA+AGG | - | chr3_4:2252061-2252080 | None:intergenic | 10.0% |
| !!! | TAAAATATGTTATATGTTTT+CGG | + | chr3_4:2252171-2252190 | Msa0484730:three_prime_UTR | 10.0% |
| !! | AGTGAATTTATTTAGATTAT+AGG | + | chr3_4:2249619-2249638 | Msa0484730:intron | 15.0% |
| !!! | TATTTCTCTTTTATTTTGTT+TGG | + | chr3_4:2249644-2249663 | Msa0484730:intron | 15.0% |
| !!! | TCTTAATTCAACTAATATTT+TGG | + | chr3_4:2249697-2249716 | Msa0484730:intron | 15.0% |
| !!! | TTAACTTTTGTTTTCTATTA+AGG | + | chr3_4:2250632-2250651 | Msa0484730:intron | 15.0% |
| !!! | TTTTAAAAAAAATCAAAGAC+AGG | - | chr3_4:2250881-2250900 | None:intergenic | 15.0% |
| !! | TACTTATAAAAAATGTTCAA+AGG | + | chr3_4:2251125-2251144 | Msa0484730:intron | 15.0% |
| !! | ATAATTATAGGGATTAAATA+TGG | + | chr3_4:2251155-2251174 | Msa0484730:intron | 15.0% |
| !!! | ATAAGAAAATTGTGTTTTAA+AGG | - | chr3_4:2251317-2251336 | None:intergenic | 15.0% |
| !!! | GCTTATTTGTTTATTTTATT+TGG | + | chr3_4:2251974-2251993 | Msa0484730:three_prime_UTR | 15.0% |
| !! | AAAATTATAAATGTTACAAG+GGG | - | chr3_4:2252059-2252078 | None:intergenic | 15.0% |
| !!! | TTTTCTTATAGAAATTTTTG+CGG | + | chr3_4:2252145-2252164 | Msa0484730:three_prime_UTR | 15.0% |
| !! | ACAAAATTGGAATATTTATA+GGG | - | chr3_4:2252198-2252217 | None:intergenic | 15.0% |
| !! | ACATTAATTGAATGAATCTA+GGG | - | chr3_4:2249203-2249222 | None:intergenic | 20.0% |
| !! | AACATTAATTGAATGAATCT+AGG | - | chr3_4:2249204-2249223 | None:intergenic | 20.0% |
| !! | GTTTCGATTTAATTGTTTAT+CGG | + | chr3_4:2249221-2249240 | Msa0484730:intron | 20.0% |
| !!! | TAATATTTTGGTATTTTGTG+TGG | + | chr3_4:2249709-2249728 | Msa0484730:intron | 20.0% |
| !! | AAGTAACTAAATGTAATCTA+AGG | - | chr3_4:2250385-2250404 | None:intergenic | 20.0% |
| !! | ACAAAATTATCAAACATAGT+GGG | - | chr3_4:2250727-2250746 | None:intergenic | 20.0% |
| !! | AACAAAATTATCAAACATAG+TGG | - | chr3_4:2250728-2250747 | None:intergenic | 20.0% |
| !! | AATGATATATGCAAGAAAAT+AGG | + | chr3_4:2251200-2251219 | Msa0484730:intron | 20.0% |
| !! | CTACAAAATTTATTCTTTGT+AGG | + | chr3_4:2251339-2251358 | Msa0484730:intron | 20.0% |
| !! | TTTGATGTTGTATTATCATA+TGG | + | chr3_4:2251559-2251578 | Msa0484730:intron | 20.0% |
| !! | AAATAAACAAATAAGCAAAG+AGG | - | chr3_4:2251970-2251989 | None:intergenic | 20.0% |
| !! | AAATTATAAATGTTACAAGG+GGG | - | chr3_4:2252058-2252077 | None:intergenic | 20.0% |
| !! | CACAAAATTGGAATATTTAT+AGG | - | chr3_4:2252199-2252218 | None:intergenic | 20.0% |
| !! | TTTGTGTTTGTTAATTCAGA+TGG | + | chr3_4:2249271-2249290 | Msa0484730:intron | 25.0% |
| !!! | TTAGATTTTTTAATGTTCCG+AGG | + | chr3_4:2249520-2249539 | Msa0484730:intron | 25.0% |
| !!! | TAGATTTTTTAATGTTCCGA+GGG | + | chr3_4:2249521-2249540 | Msa0484730:intron | 25.0% |
| ! | TCTGAAAAACATAGACATAT+CGG | - | chr3_4:2249925-2249944 | None:intergenic | 25.0% |
| ! | GTGAAAACAATGAAAACATA+CGG | - | chr3_4:2250034-2250053 | None:intergenic | 25.0% |
| ! | TTCAATGTAGATTGATAGAA+GGG | + | chr3_4:2250553-2250572 | Msa0484730:intron | 25.0% |
| ! | TTCTTTAAATGTATTCTCTG+TGG | + | chr3_4:2250751-2250770 | Msa0484730:intron | 25.0% |
| ! | ACCTTTAAATGAATATGAAG+AGG | + | chr3_4:2250836-2250855 | Msa0484730:CDS | 25.0% |
| ! | TCCTCTTCATATTCATTTAA+AGG | - | chr3_4:2250840-2250859 | None:intergenic | 25.0% |
| ! | TTAAATGAATATGAAGAGGA+AGG | + | chr3_4:2250840-2250859 | Msa0484730:CDS | 25.0% |
| ! | GAAAATAGGAAATATCTACA+TGG | + | chr3_4:2251214-2251233 | Msa0484730:intron | 25.0% |
| ! | TTCTGATCATTCTACAATAT+AGG | - | chr3_4:2251267-2251286 | None:intergenic | 25.0% |
| ! | ACTAACAAATAAATACGACA+AGG | - | chr3_4:2251710-2251729 | None:intergenic | 25.0% |
| !!! | TATTTGTTAGTTTTCTTTGC+TGG | + | chr3_4:2251719-2251738 | Msa0484730:intron | 25.0% |
| ! | AATTATAAATGTTACAAGGG+GGG | - | chr3_4:2252057-2252076 | None:intergenic | 25.0% |
| ! | TGTTTTGTGGTTTCAATTTG+AGG | - | chr3_4:2249046-2249065 | None:intergenic | 30.0% |
| ! | GTTTGTTAATTCAGATGGAT+AGG | + | chr3_4:2249276-2249295 | Msa0484730:intron | 30.0% |
| AACACTAACTTGAAAAAGAG+TGG | - | chr3_4:2249402-2249421 | None:intergenic | 30.0% | |
| AATCAATCAATTATGTCCCT+CGG | - | chr3_4:2249540-2249559 | None:intergenic | 30.0% | |
| ACCAACCAATTTAATCTGTA+GGG | - | chr3_4:2249874-2249893 | None:intergenic | 30.0% | |
| AAAAACATAGACATATCGGT+CGG | - | chr3_4:2249921-2249940 | None:intergenic | 30.0% | |
| !! | ATGTCTATGTTTTTCAGAGA+AGG | + | chr3_4:2249927-2249946 | Msa0484730:intron | 30.0% |
| AACTGATATAACTGACACAT+GGG | + | chr3_4:2249985-2250004 | Msa0484730:CDS | 30.0% | |
| ! | TTCATTTTACTTGTGCAGTT+TGG | + | chr3_4:2250105-2250124 | Msa0484730:intron | 30.0% |
| ! | TTCATGCCTTATCTTTTGAT+TGG | + | chr3_4:2250249-2250268 | Msa0484730:intron | 30.0% |
| ACTAAGCCAATCAAAAGATA+AGG | - | chr3_4:2250258-2250277 | None:intergenic | 30.0% | |
| !!! | TTTTTGAAGCAAACCACTTA+AGG | + | chr3_4:2250280-2250299 | Msa0484730:intron | 30.0% |
| CTTCAATGTAGATTGATAGA+AGG | + | chr3_4:2250552-2250571 | Msa0484730:intron | 30.0% | |
| TCACTTGTATAAATCATGAC+TGG | - | chr3_4:2250694-2250713 | None:intergenic | 30.0% | |
| ! | GTGAAAAGTTGTGATTTTCA+TGG | + | chr3_4:2250903-2250922 | Msa0484730:intron | 30.0% |
| !! | CTGTAATTTTGATACACAGA+AGG | + | chr3_4:2250941-2250960 | Msa0484730:intron | 30.0% |
| GATTGTATGACTTGAGAATA+AGG | + | chr3_4:2251059-2251078 | Msa0484730:intron | 30.0% | |
| ! | ATGACTTGAGAATAAGGTTT+TGG | + | chr3_4:2251065-2251084 | Msa0484730:intron | 30.0% |
| AATAGGAAATATCTACATGG+AGG | + | chr3_4:2251217-2251236 | Msa0484730:intron | 30.0% | |
| TTCTTTGTAGGAATGTACAA+TGG | + | chr3_4:2251351-2251370 | Msa0484730:intron | 30.0% | |
| TCTTTGTAGGAATGTACAAT+GGG | + | chr3_4:2251352-2251371 | Msa0484730:intron | 30.0% | |
| ! | TCTTCTGTCGCTTATTTAAT+AGG | - | chr3_4:2251655-2251674 | None:intergenic | 30.0% |
| AATACGACAAGGAAAACAAT+TGG | - | chr3_4:2251699-2251718 | None:intergenic | 30.0% | |
| !!! | GGATATGGGATTTTGTTTTG+TGG | - | chr3_4:2249059-2249078 | None:intergenic | 35.0% |
| ! | TGAATGAATCTAGGGTTTGA+AGG | - | chr3_4:2249195-2249214 | None:intergenic | 35.0% |
| ! | GGATCTCATTTTCGTTGATA+GGG | - | chr3_4:2249334-2249353 | None:intergenic | 35.0% |
| ! | TCTAAAGTCACACATATGAG+TGG | - | chr3_4:2249482-2249501 | None:intergenic | 35.0% |
| AGAAATCGTTCTCAAAGCAA+TGG | + | chr3_4:2249784-2249803 | Msa0484730:CDS | 35.0% | |
| GAAATCGTTCTCAAAGCAAT+GGG | + | chr3_4:2249785-2249804 | Msa0484730:CDS | 35.0% | |
| GACGATTACTGAGCTAATTA+AGG | + | chr3_4:2249829-2249848 | Msa0484730:CDS | 35.0% | |
| GAGTTCCCTACAGATTAAAT+TGG | + | chr3_4:2249866-2249885 | Msa0484730:intron | 35.0% | |
| TCCCTACAGATTAAATTGGT+TGG | + | chr3_4:2249870-2249889 | Msa0484730:intron | 35.0% | |
| CACCAACCAATTTAATCTGT+AGG | - | chr3_4:2249875-2249894 | None:intergenic | 35.0% | |
| !! | GTTTTTCAGAGAAGGATTGT+TGG | + | chr3_4:2249935-2249954 | Msa0484730:intron | 35.0% |
| CTGCATCAGAACACTATTAT+TGG | + | chr3_4:2249959-2249978 | Msa0484730:CDS | 35.0% | |
| CAACTGATATAACTGACACA+TGG | + | chr3_4:2249984-2250003 | Msa0484730:CDS | 35.0% | |
| CAATGAAAACATACGGAAGA+AGG | - | chr3_4:2250027-2250046 | None:intergenic | 35.0% | |
| TAGTTTATGTGTGCATAGCA+TGG | + | chr3_4:2250071-2250090 | Msa0484730:intron | 35.0% | |
| AGTTTATGTGTGCATAGCAT+GGG | + | chr3_4:2250072-2250091 | Msa0484730:intron | 35.0% | |
| TACTTTGTCAAAGAAAGAGC+TGG | + | chr3_4:2250159-2250178 | Msa0484730:CDS | 35.0% | |
| AAGCAAACCACTTAAGGATT+AGG | + | chr3_4:2250286-2250305 | Msa0484730:intron | 35.0% | |
| CATGTTTCCTAATCCTTAAG+TGG | - | chr3_4:2250296-2250315 | None:intergenic | 35.0% | |
| TAGGAAACATGTTAGCTAAG+TGG | + | chr3_4:2250305-2250324 | Msa0484730:intron | 35.0% | |
| ATGTTAATCTCAGTCACCAA+CGG | - | chr3_4:2250352-2250371 | None:intergenic | 35.0% | |
| ! | ATCAAACATAGTGGGAAAGA+CGG | - | chr3_4:2250719-2250738 | None:intergenic | 35.0% |
| ! | AAAGGTTTTACTTGATCAGC+CGG | - | chr3_4:2250822-2250841 | None:intergenic | 35.0% |
| AATGAATATGAAGAGGAAGG+AGG | + | chr3_4:2250843-2250862 | Msa0484730:CDS | 35.0% | |
| TGATGTAGTCAATCACATGT+AGG | - | chr3_4:2251181-2251200 | None:intergenic | 35.0% | |
| CTTTGTAGGAATGTACAATG+GGG | + | chr3_4:2251353-2251372 | Msa0484730:intron | 35.0% | |
| TTTGTAGGAATGTACAATGG+GGG | + | chr3_4:2251354-2251373 | Msa0484730:intron | 35.0% | |
| !! | GAATATGGTGATGGTTATGA+TGG | + | chr3_4:2251381-2251400 | Msa0484730:CDS | 35.0% |
| AGCGACAGAAGAAAATTACT+TGG | + | chr3_4:2251663-2251682 | Msa0484730:intron | 35.0% | |
| CTACAACGATTACTCTAGTA+AGG | - | chr3_4:2251761-2251780 | None:intergenic | 35.0% | |
| ATGCTGTGTTAATTACTTGC+AGG | + | chr3_4:2251863-2251882 | Msa0484730:intron | 35.0% | |
| AACTACAAAACCAAAACTGC+AGG | - | chr3_4:2252034-2252053 | None:intergenic | 35.0% | |
| !!! | TTGACAGGTTTTGGGGATAT+GGG | - | chr3_4:2249073-2249092 | None:intergenic | 40.0% |
| !!! | AGTTGAGTTGACAGGTTTTG+GGG | - | chr3_4:2249080-2249099 | None:intergenic | 40.0% |
| !!! | GAGTTGAGTTGACAGGTTTT+GGG | - | chr3_4:2249081-2249100 | None:intergenic | 40.0% |
| !!! | TGAGTTGAGTTGACAGGTTT+TGG | - | chr3_4:2249082-2249101 | None:intergenic | 40.0% |
| TTCAGATGGATAGGTATCAG+AGG | + | chr3_4:2249285-2249304 | Msa0484730:intron | 40.0% | |
| TCAGATGGATAGGTATCAGA+GGG | + | chr3_4:2249286-2249305 | Msa0484730:intron | 40.0% | |
| ! | CGGATCTCATTTTCGTTGAT+AGG | - | chr3_4:2249335-2249354 | None:intergenic | 40.0% |
| TCACTCGGCAATTAATACAC+TGG | - | chr3_4:2249584-2249603 | None:intergenic | 40.0% | |
| ! | GCACTATGTGTGTTTTCTGT+AGG | + | chr3_4:2249748-2249767 | Msa0484730:intron | 40.0% |
| ! | GTGTGTTTTCTGTAGGAGAA+AGG | + | chr3_4:2249755-2249774 | Msa0484730:intron | 40.0% |
| ACTGAGCTAATTAAGGTGAG+AGG | + | chr3_4:2249836-2249855 | Msa0484730:intron | 40.0% | |
| CTGAGCTAATTAAGGTGAGA+GGG | + | chr3_4:2249837-2249856 | Msa0484730:intron | 40.0% | |
| TCATGAAAGTTCATACCCTG+TGG | - | chr3_4:2250194-2250213 | None:intergenic | 40.0% | |
| GCATTTACACAAACACAGAC+CGG | - | chr3_4:2250451-2250470 | None:intergenic | 40.0% | |
| ATGTTAGACCCTTGACTTCA+AGG | + | chr3_4:2250479-2250498 | Msa0484730:intron | 40.0% | |
| ! | TACAATGGGGGTATGGAATA+TGG | + | chr3_4:2251366-2251385 | Msa0484730:CDS | 40.0% |
| !! | TATGGTGATGGTTATGATGG+TGG | + | chr3_4:2251384-2251403 | Msa0484730:CDS | 40.0% |
| CCATTGTCATAATACCCAAC+CGG | - | chr3_4:2251489-2251508 | None:intergenic | 40.0% | |
| TGTTAATTACTTGCAGGCCA+AGG | + | chr3_4:2251869-2251888 | Msa0484730:intron | 40.0% | |
| ATTTGAGTCGTTCAGTGTTG+CGG | + | chr3_4:2252001-2252020 | Msa0484730:three_prime_UTR | 40.0% | |
| AAACCAAAACTGCAGGAACA+TGG | - | chr3_4:2252027-2252046 | None:intergenic | 40.0% | |
| AGAGAAAGAGATACACGCGA+GGG | - | chr3_4:2249012-2249031 | None:intergenic | 45.0% | |
| ! | TGGTTTCAATTTGAGGCCGA+GGG | - | chr3_4:2249039-2249058 | None:intergenic | 45.0% |
| !!! | GTTGACAGGTTTTGGGGATA+TGG | - | chr3_4:2249074-2249093 | None:intergenic | 45.0% |
| !! | ACTCTGTGAGTTGAGTTGAC+AGG | - | chr3_4:2249088-2249107 | None:intergenic | 45.0% |
| TCACTCACGCTCAACACAAA+CGG | + | chr3_4:2249163-2249182 | Msa0484730:five_prime_UTR | 45.0% | |
| TTGATAGGGCTATCTGCCTT+GGG | - | chr3_4:2249320-2249339 | None:intergenic | 45.0% | |
| ! | TCCTTCCTTGAGTGGTAATG+CGG | - | chr3_4:2249355-2249374 | None:intergenic | 45.0% |
| GTTTCTCATCCTTCCTTGAG+TGG | - | chr3_4:2249363-2249382 | None:intergenic | 45.0% | |
| ACATGGGAACCACTTGAAGA+AGG | + | chr3_4:2250001-2250020 | Msa0484730:CDS | 45.0% | |
| TGAAAGTTCATACCCTGTGG+AGG | - | chr3_4:2250191-2250210 | None:intergenic | 45.0% | |
| ACCACACTCCTTGAAGTCAA+GGG | - | chr3_4:2250490-2250509 | None:intergenic | 45.0% | |
| TACCACACTCCTTGAAGTCA+AGG | - | chr3_4:2250491-2250510 | None:intergenic | 45.0% | |
| CAGATATCAACCTCCTCTTC+CGG | + | chr3_4:2250800-2250819 | Msa0484730:intron | 45.0% | |
| TTTACTTGATCAGCCGGAAG+AGG | - | chr3_4:2250816-2250835 | None:intergenic | 45.0% | |
| AGGAATGTACAATGGGGGTA+TGG | + | chr3_4:2251359-2251378 | Msa0484730:intron | 45.0% | |
| CCGGTTGGGTATTATGACAA+TGG | + | chr3_4:2251486-2251505 | Msa0484730:CDS | 45.0% | |
| CTAACTAAGCAGCTGCTACA+CGG | - | chr3_4:2251937-2251956 | None:intergenic | 45.0% | |
| AGCAGCTGCTTAGTTAGAAG+AGG | + | chr3_4:2251940-2251959 | Msa0484730:exon | 45.0% | |
| GCAGCTGCTTAGTTAGAAGA+GGG | + | chr3_4:2251941-2251960 | Msa0484730:exon | 45.0% | |
| GAGAGAAAGAGATACACGCG+AGG | - | chr3_4:2249013-2249032 | None:intergenic | 50.0% | |
| ATCTCTTTCTCTCTCCCCCT+CGG | + | chr3_4:2249020-2249039 | Msa0484730:five_prime_UTR | 50.0% | |
| ! | GTTTCAATTTGAGGCCGAGG+GGG | - | chr3_4:2249037-2249056 | None:intergenic | 50.0% |
| ! | GGTTTCAATTTGAGGCCGAG+GGG | - | chr3_4:2249038-2249057 | None:intergenic | 50.0% |
| ! | GTGGTTTCAATTTGAGGCCG+AGG | - | chr3_4:2249040-2249059 | None:intergenic | 50.0% |
| AGTGAGATGGAAGAGAGCGA+GGG | - | chr3_4:2249148-2249167 | None:intergenic | 50.0% | |
| TGTGTTGAGCGTGAGTGAGA+TGG | - | chr3_4:2249161-2249180 | None:intergenic | 50.0% | |
| GATGGATAGGTATCAGAGGG+TGG | + | chr3_4:2249289-2249308 | Msa0484730:intron | 50.0% | |
| ! | GTTGATAGGGCTATCTGCCT+TGG | - | chr3_4:2249321-2249340 | None:intergenic | 50.0% |
| GAGATCCGCATTACCACTCA+AGG | + | chr3_4:2249347-2249366 | Msa0484730:CDS | 50.0% | |
| TCCGCATTACCACTCAAGGA+AGG | + | chr3_4:2249351-2249370 | Msa0484730:CDS | 50.0% | |
| GGAAGAAGGCCTTCTTCAAG+TGG | - | chr3_4:2250013-2250032 | None:intergenic | 50.0% | |
| AGCTGGATACATCCTCCACA+GGG | + | chr3_4:2250176-2250195 | Msa0484730:CDS | 50.0% | |
| ACACTTCAGAGTGAAGCCGT+TGG | + | chr3_4:2250333-2250352 | Msa0484730:intron | 50.0% | |
| ! | CCATGTGTTACTGCTGTGTC+CGG | + | chr3_4:2250429-2250448 | Msa0484730:intron | 50.0% |
| ACCCTTGACTTCAAGGAGTG+TGG | + | chr3_4:2250486-2250505 | Msa0484730:intron | 50.0% | |
| ! | GGGGGTATGGAATATGGTGA+TGG | + | chr3_4:2251372-2251391 | Msa0484730:CDS | 50.0% |
| !! | GATGGTTATGATGGTGGACG+TGG | + | chr3_4:2251390-2251409 | Msa0484730:CDS | 50.0% |
| !! | TATGATGGTGGACGTGGCTA+TGG | + | chr3_4:2251396-2251415 | Msa0484730:CDS | 50.0% |
| GTCATAATACCCAACCGGCT+GGG | - | chr3_4:2251484-2251503 | None:intergenic | 50.0% | |
| TGTCATAATACCCAACCGGC+TGG | - | chr3_4:2251485-2251504 | None:intergenic | 50.0% | |
| GTGAGATGGAAGAGAGCGAG+GGG | - | chr3_4:2249147-2249166 | None:intergenic | 55.0% | |
| GAGTGAGATGGAAGAGAGCG+AGG | - | chr3_4:2249149-2249168 | None:intergenic | 55.0% | |
| TCAGAGGGTGGAGAAACCCA+AGG | + | chr3_4:2249301-2249320 | Msa0484730:CDS | 55.0% | |
| GAGCTGGATACATCCTCCAC+AGG | + | chr3_4:2250175-2250194 | Msa0484730:CDS | 55.0% | |
| CCGGACACAGCAGTAACACA+TGG | - | chr3_4:2250432-2250451 | None:intergenic | 55.0% | |
| ACTTGATCAGCCGGAAGAGG+AGG | - | chr3_4:2250813-2250832 | None:intergenic | 55.0% | |
| GATACACAGAAGGCTCGCCA+AGG | + | chr3_4:2250951-2250970 | Msa0484730:intron | 55.0% | |
| TCTCTCATGCTTACCGCGTG+GGG | - | chr3_4:2251532-2251551 | None:intergenic | 55.0% | |
| CTCTCTCATGCTTACCGCGT+GGG | - | chr3_4:2251533-2251552 | None:intergenic | 55.0% | |
| TTACTTGCAGGCCAAGGTCG+TGG | + | chr3_4:2251875-2251894 | Msa0484730:intron | 55.0% | |
| ! | CGGCCATGTTCCTGCAGTTT+TGG | + | chr3_4:2252021-2252040 | Msa0484730:three_prime_UTR | 55.0% |
| ATGGAAGAGAGCGAGGGGCT+GGG | - | chr3_4:2249142-2249161 | None:intergenic | 60.0% | |
| CTCGCCAAGGATGCGAGGAA+GGG | + | chr3_4:2250964-2250983 | Msa0484730:CDS | 60.0% | |
| TCGCCAAGGATGCGAGGAAG+GGG | + | chr3_4:2250965-2250984 | Msa0484730:CDS | 60.0% | |
| !! | GATGGTGGACGTGGCTATGG+TGG | + | chr3_4:2251399-2251418 | Msa0484730:CDS | 60.0% |
| GACGTGGCTATGGTGGCAGA+GGG | + | chr3_4:2251406-2251425 | Msa0484730:CDS | 60.0% | |
| ! | GGAAAGCACGACCCCATGCA+CGG | - | chr3_4:2251437-2251456 | None:intergenic | 60.0% |
| GTGCATGGGGTCGTGCTTTC+CGG | + | chr3_4:2251436-2251455 | Msa0484730:CDS | 60.0% | |
| TGCATGGGGTCGTGCTTTCC+GGG | + | chr3_4:2251437-2251456 | Msa0484730:CDS | 60.0% | |
| GCTCTCTCATGCTTACCGCG+TGG | - | chr3_4:2251534-2251553 | None:intergenic | 60.0% | |
| TTGCAGGCCAAGGTCGTGGA+AGG | + | chr3_4:2251879-2251898 | Msa0484730:intron | 60.0% | |
| TGCAGGCCAAGGTCGTGGAA+GGG | + | chr3_4:2251880-2251899 | Msa0484730:intron | 60.0% | |
| CTCTTCCCCTTCCACGACCT+TGG | - | chr3_4:2251889-2251908 | None:intergenic | 60.0% | |
| CAAGGTCGTGGAAGGGGAAG+AGG | + | chr3_4:2251887-2251906 | Msa0484730:CDS | 60.0% | |
| CAGCATCACGACCACGTCCA+CGG | - | chr3_4:2251913-2251932 | None:intergenic | 60.0% | |
| GATGGAAGAGAGCGAGGGGC+TGG | - | chr3_4:2249143-2249162 | None:intergenic | 65.0% | |
| GAAGGCTCGCCAAGGATGCG+AGG | + | chr3_4:2250959-2250978 | Msa0484730:intron | 65.0% | |
| GCTCGCCAAGGATGCGAGGA+AGG | + | chr3_4:2250963-2250982 | Msa0484730:CDS | 65.0% | |
| CGCCAAGGATGCGAGGAAGG+GGG | + | chr3_4:2250966-2250985 | Msa0484730:CDS | 65.0% | |
| CTCTACCCCTGCCCCTTCCA+CGG | - | chr3_4:2250997-2251016 | None:intergenic | 65.0% | |
| AGGGGCAGGGGTAGAGGTAG+AGG | + | chr3_4:2251001-2251020 | Msa0484730:CDS | 65.0% | |
| GGACGTGGCTATGGTGGCAG+AGG | + | chr3_4:2251405-2251424 | Msa0484730:CDS | 65.0% | |
| GCATGGGGTCGTGCTTTCCG+GGG | + | chr3_4:2251438-2251457 | Msa0484730:CDS | 65.0% | |
| CATAGCCACGTCCTCGTCCC+CGG | - | chr3_4:2251458-2251477 | None:intergenic | 65.0% | |
| ACGTGGCTATGGTGCCCAGC+CGG | + | chr3_4:2251467-2251486 | Msa0484730:CDS | 65.0% | |
| GCTATGGTGCCCAGCCGGTT+GGG | + | chr3_4:2251472-2251491 | Msa0484730:CDS | 65.0% | |
| TCATGCTTACCGCGTGGGGC+AGG | - | chr3_4:2251528-2251547 | None:intergenic | 65.0% | |
| GCAGGCCAAGGTCGTGGAAG+GGG | + | chr3_4:2251881-2251900 | Msa0484730:intron | 65.0% | |
| CGTGGACGTGGTCGTGATGC+TGG | + | chr3_4:2251911-2251930 | Msa0484730:CDS | 65.0% | |
| CGAGGGGCTGGGTGGCTATG+GGG | - | chr3_4:2249131-2249150 | None:intergenic | 70.0% | |
| GCGAGGGGCTGGGTGGCTAT+GGG | - | chr3_4:2249132-2249151 | None:intergenic | 70.0% | |
| AGCGAGGGGCTGGGTGGCTA+TGG | - | chr3_4:2249133-2249152 | None:intergenic | 70.0% | |
| GAAGAGAGCGAGGGGCTGGG+TGG | - | chr3_4:2249139-2249158 | None:intergenic | 70.0% | |
| CGCCCCCTTCCTCGCATCCT+TGG | - | chr3_4:2250971-2250990 | None:intergenic | 70.0% | |
| AGGATGCGAGGAAGGGGGCG+TGG | + | chr3_4:2250971-2250990 | Msa0484730:CDS | 70.0% | |
| ! | AAGGGGGCGTGGCCGTGGAA+GGG | + | chr3_4:2250982-2251001 | Msa0484730:CDS | 70.0% |
| CGTGGAAGGGGCAGGGGTAG+AGG | + | chr3_4:2250995-2251014 | Msa0484730:CDS | 70.0% | |
| GGCTATGGTGGCAGAGGGCG+TGG | + | chr3_4:2251411-2251430 | Msa0484730:CDS | 70.0% | |
| ! | CAGAGGGCGTGGCCGTGCAT+GGG | + | chr3_4:2251422-2251441 | Msa0484730:CDS | 70.0% |
| ! | AGAGGGCGTGGCCGTGCATG+GGG | + | chr3_4:2251423-2251442 | Msa0484730:CDS | 70.0% |
| GGTCGTGCTTTCCGGGGACG+AGG | + | chr3_4:2251444-2251463 | Msa0484730:CDS | 70.0% | |
| GCTTTCCGGGGACGAGGACG+TGG | + | chr3_4:2251450-2251469 | Msa0484730:CDS | 70.0% | |
| CGGGGACGAGGACGTGGCTA+TGG | + | chr3_4:2251456-2251475 | Msa0484730:CDS | 70.0% | |
| GGCTATGGTGCCCAGCCGGT+TGG | + | chr3_4:2251471-2251490 | Msa0484730:CDS | 70.0% | |
| CTTACCGCGTGGGGCAGGTG+GGG | - | chr3_4:2251523-2251542 | None:intergenic | 70.0% | |
| GCTTACCGCGTGGGGCAGGT+GGG | - | chr3_4:2251524-2251543 | None:intergenic | 70.0% | |
| TGCTTACCGCGTGGGGCAGG+TGG | - | chr3_4:2251525-2251544 | None:intergenic | 70.0% | |
| CGTGGAAGGGGAAGAGGCCG+TGG | + | chr3_4:2251893-2251912 | Msa0484730:CDS | 70.0% | |
| AGGGGAAGAGGCCGTGGACG+TGG | + | chr3_4:2251899-2251918 | Msa0484730:CDS | 70.0% | |
| ! | GAAGGGGGCGTGGCCGTGGA+AGG | + | chr3_4:2250981-2251000 | Msa0484730:CDS | 75.0% |
| ! | AGGGGGCGTGGCCGTGGAAG+GGG | + | chr3_4:2250983-2251002 | Msa0484730:CDS | 75.0% |
| GCGTGGCCGTGGAAGGGGCA+GGG | + | chr3_4:2250988-2251007 | Msa0484730:CDS | 75.0% | |
| CGTGGCCGTGGAAGGGGCAG+GGG | + | chr3_4:2250989-2251008 | Msa0484730:CDS | 75.0% | |
| ! | GCAGAGGGCGTGGCCGTGCA+TGG | + | chr3_4:2251421-2251440 | Msa0484730:CDS | 75.0% |
| GATGCCCCACCTGCCCCACG+CGG | + | chr3_4:2251516-2251535 | Msa0484730:CDS | 75.0% | |
| !! | CGAGGAAGGGGGCGTGGCCG+TGG | + | chr3_4:2250977-2250996 | Msa0484730:CDS | 80.0% |
| ! | GGCGTGGCCGTGGAAGGGGC+AGG | + | chr3_4:2250987-2251006 | Msa0484730:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 2249001 | 2252229 | 2249001 | ID=Msa0484730;Name=Msa0484730 |
| chr3_4 | mRNA | 2249001 | 2252229 | 2249001 | ID=Msa0484730-mRNA-1;Parent=Msa0484730;Name=Msa0484730-mRNA-1;_AED=0.09;_eAED=0.09;_QI=184|1|1|1|0.87|0.88|9|277|245 |
| chr3_4 | exon | 2249001 | 2249184 | 2249001 | ID=Msa0484730-mRNA-1:exon:750;Parent=Msa0484730-mRNA-1 |
| chr3_4 | exon | 2249290 | 2249412 | 2249290 | ID=Msa0484730-mRNA-1:exon:751;Parent=Msa0484730-mRNA-1 |
| chr3_4 | exon | 2249770 | 2249850 | 2249770 | ID=Msa0484730-mRNA-1:exon:752;Parent=Msa0484730-mRNA-1 |
| chr3_4 | exon | 2249944 | 2250032 | 2249944 | ID=Msa0484730-mRNA-1:exon:753;Parent=Msa0484730-mRNA-1 |
| chr3_4 | exon | 2250123 | 2250197 | 2250123 | ID=Msa0484730-mRNA-1:exon:754;Parent=Msa0484730-mRNA-1 |
| chr3_4 | exon | 2250803 | 2250864 | 2250803 | ID=Msa0484730-mRNA-1:exon:755;Parent=Msa0484730-mRNA-1 |
| chr3_4 | exon | 2250960 | 2251022 | 2250960 | ID=Msa0484730-mRNA-1:exon:756;Parent=Msa0484730-mRNA-1 |
| chr3_4 | exon | 2251361 | 2251537 | 2251361 | ID=Msa0484730-mRNA-1:exon:757;Parent=Msa0484730-mRNA-1 |
| chr3_4 | exon | 2251885 | 2252229 | 2251885 | ID=Msa0484730-mRNA-1:exon:758;Parent=Msa0484730-mRNA-1 |
| chr3_4 | five_prime_UTR | 2249001 | 2249184 | 2249001 | ID=Msa0484730-mRNA-1:five_prime_utr;Parent=Msa0484730-mRNA-1 |
| chr3_4 | CDS | 2249290 | 2249412 | 2249290 | ID=Msa0484730-mRNA-1:cds;Parent=Msa0484730-mRNA-1 |
| chr3_4 | CDS | 2249770 | 2249850 | 2249770 | ID=Msa0484730-mRNA-1:cds;Parent=Msa0484730-mRNA-1 |
| chr3_4 | CDS | 2249944 | 2250032 | 2249944 | ID=Msa0484730-mRNA-1:cds;Parent=Msa0484730-mRNA-1 |
| chr3_4 | CDS | 2250123 | 2250197 | 2250123 | ID=Msa0484730-mRNA-1:cds;Parent=Msa0484730-mRNA-1 |
| chr3_4 | CDS | 2250803 | 2250864 | 2250803 | ID=Msa0484730-mRNA-1:cds;Parent=Msa0484730-mRNA-1 |
| chr3_4 | CDS | 2250960 | 2251022 | 2250960 | ID=Msa0484730-mRNA-1:cds;Parent=Msa0484730-mRNA-1 |
| chr3_4 | CDS | 2251361 | 2251537 | 2251361 | ID=Msa0484730-mRNA-1:cds;Parent=Msa0484730-mRNA-1 |
| chr3_4 | CDS | 2251885 | 2251952 | 2251885 | ID=Msa0484730-mRNA-1:cds;Parent=Msa0484730-mRNA-1 |
| chr3_4 | three_prime_UTR | 2251953 | 2252229 | 2251953 | ID=Msa0484730-mRNA-1:three_prime_utr;Parent=Msa0484730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
