Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529900 | XP_003604229.1 | 98.611 | 144 | 2 | 0 | 45 | 188 | 1 | 144 | 1.35e-97 | 289 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529900 | sp|Q9XHS0|RS12_HORVU | 71.528 | 144 | 40 | 1 | 45 | 188 | 1 | 143 | 1.40e-68 | 208 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529900 | G7JDB2 | 98.611 | 144 | 2 | 0 | 45 | 188 | 1 | 144 | 6.47e-98 | 289 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0529900 | 0.834098 | 3.647398e-56 | -8.615850e-47 |
| Msa0003330 | Msa0529900 | 0.806787 | 6.943374e-50 | -8.615850e-47 |
| Msa0021320 | Msa0529900 | 0.800430 | 1.446468e-48 | -8.615850e-47 |
| Msa0027590 | Msa0529900 | 0.845519 | 3.861546e-59 | -8.615850e-47 |
| Msa0032780 | Msa0529900 | 0.844375 | 7.859680e-59 | -8.615850e-47 |
| Msa0040220 | Msa0529900 | 0.880740 | 4.280831e-70 | -8.615850e-47 |
| Msa0075350 | Msa0529900 | 0.831336 | 1.768520e-55 | -8.615850e-47 |
| Msa0087910 | Msa0529900 | 0.911890 | 3.642336e-83 | -8.615850e-47 |
| Msa0114600 | Msa0529900 | 0.863029 | 3.331566e-64 | -8.615850e-47 |
| Msa0128330 | Msa0529900 | 0.879737 | 9.759577e-70 | -8.615850e-47 |
| Msa0128750 | Msa0529900 | 0.845075 | 5.089887e-59 | -8.615850e-47 |
| Msa0132460 | Msa0529900 | 0.834069 | 3.708850e-56 | -8.615850e-47 |
| Msa0134580 | Msa0529900 | 0.907301 | 5.872356e-81 | -8.615850e-47 |
| Msa0167860 | Msa0529900 | 0.853548 | 2.222211e-61 | -8.615850e-47 |
| Msa0174580 | Msa0529900 | 0.883944 | 2.922240e-71 | -8.615850e-47 |
| Msa0182050 | Msa0529900 | 0.835754 | 1.395643e-56 | -8.615850e-47 |
| Msa0186740 | Msa0529900 | 0.808393 | 3.167044e-50 | -8.615850e-47 |
| Msa0191450 | Msa0529900 | 0.867078 | 1.783429e-65 | -8.615850e-47 |
| Msa0191550 | Msa0529900 | 0.874198 | 8.145729e-68 | -8.615850e-47 |
| Msa0192300 | Msa0529900 | 0.833569 | 4.946144e-56 | -8.615850e-47 |
| Msa0194940 | Msa0529900 | 0.918177 | 2.149360e-86 | -8.615850e-47 |
| Msa0210330 | Msa0529900 | 0.823729 | 1.184381e-53 | -8.615850e-47 |
| Msa0210360 | Msa0529900 | 0.832633 | 8.455658e-56 | -8.615850e-47 |
| Msa0222730 | Msa0529900 | 0.853530 | 2.248279e-61 | -8.615850e-47 |
| Msa0228540 | Msa0529900 | 0.822161 | 2.746927e-53 | -8.615850e-47 |
| Msa0235050 | Msa0529900 | 0.801453 | 8.940840e-49 | -8.615850e-47 |
| Msa0369410 | Msa0529900 | 0.841194 | 5.509367e-58 | -8.615850e-47 |
| Msa0419710 | Msa0529900 | 0.867280 | 1.537775e-65 | -8.615850e-47 |
| Msa0426090 | Msa0529900 | 0.851038 | 1.151334e-60 | -8.615850e-47 |
| Msa0426250 | Msa0529900 | 0.878146 | 3.554692e-69 | -8.615850e-47 |
| Msa0432750 | Msa0529900 | 0.805536 | 1.273139e-49 | -8.615850e-47 |
| Msa0438960 | Msa0529900 | 0.822325 | 2.516499e-53 | -8.615850e-47 |
| Msa0450150 | Msa0529900 | 0.858991 | 5.630833e-63 | -8.615850e-47 |
| Msa0463520 | Msa0529900 | 0.807095 | 5.974614e-50 | -8.615850e-47 |
| Msa0471880 | Msa0529900 | 0.828618 | 8.133110e-55 | -8.615850e-47 |
| Msa0472480 | Msa0529900 | 0.839477 | 1.547841e-57 | -8.615850e-47 |
| Msa0475810 | Msa0529900 | 0.865319 | 6.438505e-65 | -8.615850e-47 |
| Msa0479980 | Msa0529900 | 0.802819 | 4.680490e-49 | -8.615850e-47 |
| Msa0481520 | Msa0529900 | 0.930164 | 2.437394e-93 | -8.615850e-47 |
| Msa0481850 | Msa0529900 | 0.821199 | 4.584875e-53 | -8.615850e-47 |
| Msa0277600 | Msa0529900 | 0.865406 | 6.045512e-65 | -8.615850e-47 |
| Msa0281330 | Msa0529900 | 0.800197 | 1.613393e-48 | -8.615850e-47 |
| Msa0281370 | Msa0529900 | 0.813148 | 2.963509e-51 | -8.615850e-47 |
| Msa0297830 | Msa0529900 | 0.813511 | 2.466770e-51 | -8.615850e-47 |
| Msa0301220 | Msa0529900 | 0.832142 | 1.118949e-55 | -8.615850e-47 |
| Msa0301250 | Msa0529900 | 0.830487 | 2.856513e-55 | -8.615850e-47 |
| Msa0312210 | Msa0529900 | 0.839374 | 1.646446e-57 | -8.615850e-47 |
| Msa0313060 | Msa0529900 | 0.858037 | 1.084716e-62 | -8.615850e-47 |
| Msa0313520 | Msa0529900 | 0.828192 | 1.030357e-54 | -8.615850e-47 |
| Msa0315430 | Msa0529900 | 0.887863 | 9.816580e-73 | -8.615850e-47 |
| Msa0335840 | Msa0529900 | 0.829840 | 4.110137e-55 | -8.615850e-47 |
| Msa0342850 | Msa0529900 | 0.809667 | 1.689500e-50 | -8.615850e-47 |
| Msa0484730 | Msa0529900 | 0.801914 | 7.191273e-49 | -8.615850e-47 |
| Msa0517480 | Msa0529900 | 0.821856 | 3.231944e-53 | -8.615850e-47 |
| Msa0529900 | Msa0547920 | 0.815162 | 1.064677e-51 | -8.615850e-47 |
| Msa0529900 | Msa0573550 | 0.889758 | 1.817244e-73 | -8.615850e-47 |
| Msa0529900 | Msa0579830 | 0.835675 | 1.461733e-56 | -8.615850e-47 |
| Msa0529900 | Msa0582070 | 0.806308 | 8.761102e-50 | -8.615850e-47 |
| Msa0529900 | Msa0584030 | 0.811416 | 7.076687e-51 | -8.615850e-47 |
| Msa0529900 | Msa0585570 | 0.841694 | 4.068433e-58 | -8.615850e-47 |
| Msa0529900 | Msa0591050 | 0.814408 | 1.564584e-51 | -8.615850e-47 |
| Msa0529900 | Msa0597240 | 0.806634 | 7.477526e-50 | -8.615850e-47 |
| Msa0529900 | Msa0605890 | 0.835608 | 1.519722e-56 | -8.615850e-47 |
| Msa0529900 | Msa0622230 | 0.875436 | 3.086343e-68 | -8.615850e-47 |
| Msa0529900 | Msa0643960 | 0.800094 | 1.693338e-48 | -8.615850e-47 |
| Msa0529900 | Msa0649890 | 0.839686 | 1.365750e-57 | -8.615850e-47 |
| Msa0529900 | Msa0653060 | 0.869163 | 3.804992e-66 | -8.615850e-47 |
| Msa0529900 | Msa0663400 | 0.852623 | 4.087336e-61 | -8.615850e-47 |
| Msa0529900 | Msa0694400 | 0.847802 | 9.181844e-60 | -8.615850e-47 |
| Msa0529900 | Msa0704860 | 0.828681 | 7.853002e-55 | -8.615850e-47 |
| Msa0529900 | Msa0705800 | 0.805537 | 1.272365e-49 | -8.615850e-47 |
| Msa0529900 | Msa0708630 | 0.834410 | 3.045465e-56 | -8.615850e-47 |
| Msa0529900 | Msa0748350 | 0.876415 | 1.422622e-68 | -8.615850e-47 |
| Msa0529900 | Msa0749000 | 0.845136 | 4.902007e-59 | -8.615850e-47 |
| Msa0529900 | Msa0758420 | 0.800268 | 1.560951e-48 | -8.615850e-47 |
| Msa0529900 | Msa0788380 | 0.834218 | 3.404060e-56 | -8.615850e-47 |
| Msa0529900 | Msa0796490 | 0.850917 | 1.245321e-60 | -8.615850e-47 |
| Msa0529900 | Msa0799830 | 0.801294 | 9.635594e-49 | -8.615850e-47 |
| Msa0529900 | Msa0838070 | 0.830535 | 2.780528e-55 | -8.615850e-47 |
| Msa0529900 | Msa0861320 | 0.817191 | 3.747689e-52 | -8.615850e-47 |
| Msa0529900 | Msa0929700 | 0.870341 | 1.569619e-66 | -8.615850e-47 |
| Msa0529900 | Msa0930100 | 0.815168 | 1.061253e-51 | -8.615850e-47 |
| Msa0529900 | Msa1037290 | 0.854888 | 9.117841e-62 | -8.615850e-47 |
| Msa0529900 | Msa1040160 | 0.844625 | 6.734636e-59 | -8.615850e-47 |
| Msa0529900 | Msa1041680 | 0.801231 | 9.925839e-49 | -8.615850e-47 |
| Msa0529900 | Msa1050100 | 0.840798 | 6.999210e-58 | -8.615850e-47 |
| Msa0529900 | Msa1078870 | 0.849285 | 3.568018e-60 | -8.615850e-47 |
| Msa0529900 | Msa1078980 | 0.850722 | 1.413327e-60 | -8.615850e-47 |
| Msa0529900 | Msa1079920 | 0.823840 | 1.115417e-53 | -8.615850e-47 |
| Msa0529900 | Msa1080350 | 0.807585 | 4.703806e-50 | -8.615850e-47 |
| Msa0529900 | Msa1082170 | 0.812482 | 4.146738e-51 | -8.615850e-47 |
| Msa0529900 | Msa1083370 | 0.849058 | 4.125638e-60 | -8.615850e-47 |
| Msa0529900 | Msa1096900 | 0.812366 | 4.395630e-51 | -8.615850e-47 |
| Msa0529900 | Msa1124850 | 0.847109 | 1.423167e-59 | -8.615850e-47 |
| Msa0529900 | Msa1126520 | 0.826311 | 2.908763e-54 | -8.615850e-47 |
| Msa0529900 | Msa1126690 | 0.831689 | 1.447988e-55 | -8.615850e-47 |
| Msa0529900 | Msa1128120 | 0.810443 | 1.149840e-50 | -8.615850e-47 |
| Msa0529900 | Msa1164150 | 0.872226 | 3.743386e-67 | -8.615850e-47 |
| Msa0529900 | Msa1165640 | 0.878292 | 3.159159e-69 | -8.615850e-47 |
| Msa0529900 | Msa1166570 | 0.804755 | 1.854844e-49 | -8.615850e-47 |
| Msa0529900 | Msa1166670 | 0.806394 | 8.404422e-50 | -8.615850e-47 |
| Msa0529900 | Msa1167540 | 0.856320 | 3.484409e-62 | -8.615850e-47 |
| Msa0529900 | Msa1169180 | 0.854840 | 9.414051e-62 | -8.615850e-47 |
| Msa0529900 | Msa1186030 | 0.825611 | 4.266404e-54 | -8.615850e-47 |
| Msa0529900 | Msa1203560 | 0.854355 | 1.300467e-61 | -8.615850e-47 |
| Msa0529900 | Msa1208330 | 0.843439 | 1.399962e-58 | -8.615850e-47 |
| Msa0529900 | Msa1240270 | 0.817010 | 4.116469e-52 | -8.615850e-47 |
| Msa0529900 | Msa1255850 | 0.813342 | 2.687489e-51 | -8.615850e-47 |
| Msa0529900 | Msa1258460 | 0.817545 | 3.119551e-52 | -8.615850e-47 |
| Msa0529900 | Msa1258540 | 0.841193 | 5.513569e-58 | -8.615850e-47 |
| Msa0529900 | Msa1278130 | 0.800396 | 1.469722e-48 | -8.615850e-47 |
| Msa0529900 | Msa1284060 | 0.807057 | 6.085655e-50 | -8.615850e-47 |
| Msa0529900 | Msa1295150 | 0.876252 | 1.618563e-68 | -8.615850e-47 |
| Msa0529900 | Msa1295170 | 0.844159 | 8.986488e-59 | -8.615850e-47 |
| Msa0529900 | Msa1311400 | 0.894253 | 2.932794e-75 | -8.615850e-47 |
| Msa0529900 | Msa1330730 | 0.826131 | 3.210441e-54 | -8.615850e-47 |
| Msa0529900 | Msa1332250 | 0.839269 | 1.752574e-57 | -8.615850e-47 |
| Msa0529900 | Msa1341780 | 0.814022 | 1.903309e-51 | -8.615850e-47 |
| Msa0529900 | Msa1351020 | 0.839478 | 1.546675e-57 | -8.615850e-47 |
| Msa0529900 | Msa1353300 | 0.812613 | 3.882121e-51 | -8.615850e-47 |
| Msa0529900 | Msa1362210 | 0.826776 | 2.253680e-54 | -8.615850e-47 |
| Msa0529900 | Msa1367540 | 0.805526 | 1.279350e-49 | -8.615850e-47 |
| Msa0529900 | Msa1368920 | 0.855115 | 7.835294e-62 | -8.615850e-47 |
| Msa0529900 | Msa1371410 | 0.808428 | 3.112656e-50 | -8.615850e-47 |
| Msa0529900 | Msa1374480 | 0.816937 | 4.274937e-52 | -8.615850e-47 |
| Msa0529900 | Msa1385480 | 0.839485 | 1.540859e-57 | -8.615850e-47 |
| Msa0529900 | Msa1397100 | 0.823234 | 1.545793e-53 | -8.615850e-47 |
| Msa0529900 | Msa1403910 | 0.807117 | 5.912582e-50 | -8.615850e-47 |
| Msa0529900 | Msa1415620 | 0.808333 | 3.260456e-50 | -8.615850e-47 |
| Msa0529900 | Msa1418770 | 0.846490 | 2.102386e-59 | -8.615850e-47 |
| Msa0529900 | Msa1424570 | 0.820403 | 6.988129e-53 | -8.615850e-47 |
| Msa0529900 | Msa1426120 | 0.847366 | 1.209965e-59 | -8.615850e-47 |
| Msa0529900 | Msa1432310 | 0.823187 | 1.585003e-53 | -8.615850e-47 |
| Msa0529900 | Msa1446410 | 0.869470 | 3.023197e-66 | -8.615850e-47 |
| Msa0529900 | Msa1449160 | 0.816550 | 5.219642e-52 | -8.615850e-47 |
| Msa0529900 | Msa1463570 | 0.880354 | 5.881576e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529900 | MtrunA17_Chr4g0001281 | 98.611 | 144 | 2 | 0 | 45 | 188 | 1 | 144 | 1.25e-101 | 289 |
| Msa0529900 | MtrunA17_Chr5g0399411 | 95.200 | 125 | 6 | 0 | 64 | 188 | 18 | 142 | 1.49e-84 | 246 |
| Msa0529900 | MtrunA17_Chr8g0384331 | 91.270 | 126 | 11 | 0 | 63 | 188 | 18 | 143 | 3.35e-82 | 240 |
| Msa0529900 | MtrunA17_Chr4g0037191 | 75.000 | 68 | 17 | 0 | 32 | 99 | 38 | 105 | 1.02e-28 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529900 | AT2G32060.3 | 72.000 | 125 | 34 | 1 | 64 | 188 | 21 | 144 | 5.80e-63 | 191 |
| Msa0529900 | AT2G32060.1 | 72.000 | 125 | 34 | 1 | 64 | 188 | 21 | 144 | 5.80e-63 | 191 |
| Msa0529900 | AT2G32060.2 | 72.000 | 125 | 34 | 1 | 64 | 188 | 21 | 144 | 5.80e-63 | 191 |
| Msa0529900 | AT1G15930.1 | 73.600 | 125 | 32 | 1 | 64 | 188 | 21 | 144 | 3.52e-62 | 189 |
| Msa0529900 | AT1G15930.2 | 73.600 | 125 | 32 | 1 | 64 | 188 | 21 | 144 | 3.52e-62 | 189 |
Find 54 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGCCGTGGTCAGGATTT+TGG | 0.169284 | 4_1:+3716643 | Msa0529900:intron |
| CTTCTAGTTGGTGTTATCTA+AGG | 0.245010 | 4_1:+3716787 | Msa0529900:three_prime_UTR |
| ACAAAAGTGATTAACTAAAT+TGG | 0.262326 | 4_1:-3716859 | None:intergenic |
| CCTGTTGCCGCCCCTGCTGC+TGG | 0.273301 | 4_1:+3715841 | Msa0529900:CDS |
| GCCCCTGCTGCTGGAATTCC+AGG | 0.275871 | 4_1:+3715850 | Msa0529900:CDS |
| ATGGAGATTCTTACTGTTTG+TGG | 0.343710 | 4_1:-3714252 | None:intergenic |
| CCAGCAGCAGGGGCGGCAAC+AGG | 0.352403 | 4_1:-3715841 | None:intergenic |
| TCGCCTGGAATTCCAGCAGC+AGG | 0.403859 | 4_1:-3715853 | None:intergenic |
| ATGATATCCATTGGCTCGCC+TGG | 0.406108 | 4_1:-3715868 | None:intergenic |
| CTGTGCAAAGTTCCTTTGTA+TGG | 0.406738 | 4_1:+3716931 | Msa0529900:three_prime_UTR |
| TGCGAAGACACTTGGAGAAT+GGG | 0.446345 | 4_1:+3716089 | Msa0529900:CDS |
| TTGACGAGTTTAACATAGTC+AGG | 0.447855 | 4_1:-3716021 | None:intergenic |
| GTGCGAAGACACTTGGAGAA+TGG | 0.457537 | 4_1:+3716088 | Msa0529900:CDS |
| AAATCTACAAGGAAAATGTC+AGG | 0.461137 | 4_1:+3714377 | Msa0529900:CDS |
| TCATCACAAACTCGTTGGAT+TGG | 0.464455 | 4_1:+3714180 | Msa0529900:CDS |
| CTGCTCCTGTGTGGTGGTCA+AGG | 0.470678 | 4_1:+3716548 | Msa0529900:CDS |
| GTGCTGCAGAACAACATTGT+AGG | 0.480720 | 4_1:-3716680 | None:intergenic |
| CTGCCTTGCAACTTGTGCTT+AGG | 0.487542 | 4_1:+3715893 | Msa0529900:CDS |
| TGCATTCATCACAAACTCGT+TGG | 0.494711 | 4_1:+3714175 | Msa0529900:CDS |
| GGAAAAGCTAGGAAGGTAAC+TGG | 0.499679 | 4_1:+3716525 | Msa0529900:CDS |
| CGCCTGGAATTCCAGCAGCA+GGG | 0.501362 | 4_1:-3715852 | None:intergenic |
| CTTGCACGTGGCCTCCATGA+AGG | 0.502412 | 4_1:+3715937 | Msa0529900:CDS |
| GTTCCTAGTGCGAAGACACT+TGG | 0.512562 | 4_1:+3716081 | Msa0529900:CDS |
| TCTCCAAGTGTCTTCGCACT+AGG | 0.516396 | 4_1:-3716084 | None:intergenic |
| CTTAGGAAGTCACTGGCATA+TGG | 0.527492 | 4_1:+3715910 | Msa0529900:CDS |
| TGGAATTCCAGCAGCAGGGG+CGG | 0.535141 | 4_1:-3715848 | None:intergenic |
| GCCTGGAATTCCAGCAGCAG+GGG | 0.541122 | 4_1:-3715851 | None:intergenic |
| CGAGTTTAACATAGTCAGGC+TGG | 0.546098 | 4_1:-3716017 | None:intergenic |
| AGGAAGTCACTGGCATATGG+TGG | 0.559341 | 4_1:+3715913 | Msa0529900:CDS |
| AACTGGCTGCTCCTGTGTGG+TGG | 0.564611 | 4_1:+3716542 | Msa0529900:CDS |
| AGAAGCAAAATTCATTCTCA+AGG | 0.566617 | 4_1:-3716769 | None:intergenic |
| CTCACTGAACTCAACGCCGC+CGG | 0.569077 | 4_1:+3714213 | Msa0529900:CDS |
| AAGGCAGTCATGATATCCAT+TGG | 0.578468 | 4_1:-3715877 | None:intergenic |
| ACTTGTGCTTAGGAAGTCAC+TGG | 0.586574 | 4_1:+3715903 | Msa0529900:CDS |
| CTCCGAGGGAAAAGCTAGGA+AGG | 0.586953 | 4_1:+3716518 | Msa0529900:CDS |
| TGGAATTCCAGGCGAGCCAA+TGG | 0.589710 | 4_1:+3715861 | Msa0529900:CDS |
| ACGCCGCCGGAGTTCTTCGT+CGG | 0.592254 | 4_1:+3714226 | Msa0529900:CDS |
| TGGCTGCCGACGAAGAACTC+CGG | 0.602640 | 4_1:-3714232 | None:intergenic |
| CTTCCTAAGCACAAGTTGCA+AGG | 0.603957 | 4_1:-3715896 | None:intergenic |
| TGACTATGTTAAACTCGTCA+AGG | 0.611176 | 4_1:+3716023 | Msa0529900:CDS |
| GCATATGGTGGGCTTGCACG+TGG | 0.612030 | 4_1:+3715925 | Msa0529900:CDS |
| GGAAGTCACTGGCATATGGT+GGG | 0.612935 | 4_1:+3715914 | Msa0529900:CDS |
| AAGACACTTGGAGAATGGGC+TGG | 0.622300 | 4_1:+3716093 | Msa0529900:CDS |
| TTGACTCCGAGGGAAAAGCT+AGG | 0.623449 | 4_1:+3716514 | Msa0529900:CDS |
| AATCTACAAGGAAAATGTCA+GGG | 0.638387 | 4_1:+3714378 | Msa0529900:CDS |
| GGTAACTGGCTGCTCCTGTG+TGG | 0.642490 | 4_1:+3716539 | Msa0529900:CDS |
| AAAGTAATTGAGAAGAACAC+AGG | 0.649204 | 4_1:+3715964 | Msa0529900:CDS |
| TTGTGTAAGATTGACTCCGA+GGG | 0.654398 | 4_1:+3716504 | Msa0529900:CDS |
| CTGCCGACGAAGAACTCCGG+CGG | 0.657958 | 4_1:-3714229 | None:intergenic |
| CACGGTACGGTACCATACAA+AGG | 0.658963 | 4_1:-3716943 | None:intergenic |
| GTTGTGTAAGATTGACTCCG+AGG | 0.676451 | 4_1:+3716503 | Msa0529900:intron |
| ATTTCAGTGACATAATGTCA+CGG | 0.679250 | 4_1:-3716961 | None:intergenic |
| TTATACCTTGACCACCACAC+AGG | 0.686928 | 4_1:-3716553 | None:intergenic |
| AGTGACATAATGTCACGGTA+CGG | 0.687302 | 4_1:-3716956 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTGTGC+AGG | + | chr4_1:3714331-3714350 | Msa0529900:intron | 15.0% |
| !!! | GTTGAATATGAATTTTAATA+CGG | + | chr4_1:3714418-3714437 | Msa0529900:intron | 15.0% |
| !!! | TTTTGTTTAGTTTATTTGAT+TGG | + | chr4_1:3714504-3714523 | Msa0529900:intron | 15.0% |
| !!! | CAAGATTCTAAAAAAAAATA+TGG | - | chr4_1:3715251-3715270 | None:intergenic | 15.0% |
| !!! | TTTGTTGTATTAATTATTGT+TGG | + | chr4_1:3716467-3716486 | Msa0529900:intron | 15.0% |
| !!! | AAAAGTATTGAAAAACTGAA+AGG | - | chr4_1:3714287-3714306 | None:intergenic | 20.0% |
| !!! | TATGAATTTTAATACGGATA+TGG | + | chr4_1:3714424-3714443 | Msa0529900:intron | 20.0% |
| !!! | GTAAAGAGACATAATTTTAT+TGG | + | chr4_1:3714531-3714550 | Msa0529900:intron | 20.0% |
| !!! | CAGAATATTGTTAATTTGAT+TGG | + | chr4_1:3714566-3714585 | Msa0529900:intron | 20.0% |
| !!! | TTGCAATTTTTGATATTTGT+GGG | + | chr4_1:3715157-3715176 | Msa0529900:intron | 20.0% |
| !!! | AACAATTATGTCATGTTTTA+GGG | - | chr4_1:3715214-3715233 | None:intergenic | 20.0% |
| !!! | ATTTCCATTCTGAAATTTAA+TGG | + | chr4_1:3716132-3716151 | Msa0529900:intron | 20.0% |
| !! | ATATCCATTAAATTTCAGAA+TGG | - | chr4_1:3716139-3716158 | None:intergenic | 20.0% |
| !! | AGTTCAATTCAAATATAGTT+TGG | - | chr4_1:3716261-3716280 | None:intergenic | 20.0% |
| !!! | AGATATGCTAATTAATTTTG+TGG | - | chr4_1:3716412-3716431 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTCTTTTTTCGAT+TGG | + | chr4_1:3716594-3716613 | Msa0529900:intron | 20.0% |
| !!! | TTTCTTTCATTTTCATTATG+TGG | + | chr4_1:3716742-3716761 | Msa0529900:three_prime_UTR | 20.0% |
| !! | ACAAAAGTGATTAACTAAAT+TGG | - | chr4_1:3716862-3716881 | None:intergenic | 20.0% |
| !!! | CTTGTTTTTTCAAATCTACA+AGG | + | chr4_1:3714366-3714385 | Msa0529900:CDS | 25.0% |
| ! | AATTAACAATATTCTGCAGT+AGG | - | chr4_1:3714562-3714581 | None:intergenic | 25.0% |
| !! | TAATTTGATTGGAGTATTAG+AGG | + | chr4_1:3714577-3714596 | Msa0529900:intron | 25.0% |
| ! | ATCATTTGTGAAACTGTTTA+TGG | + | chr4_1:3714642-3714661 | Msa0529900:intron | 25.0% |
| ! | TCATTTGTGAAACTGTTTAT+GGG | + | chr4_1:3714643-3714662 | Msa0529900:intron | 25.0% |
| ! | CAAAAATAAGCTAATCCATA+CGG | + | chr4_1:3714986-3715005 | Msa0529900:intron | 25.0% |
| ! | AAAAATAAGCTAATCCATAC+GGG | + | chr4_1:3714987-3715006 | Msa0529900:intron | 25.0% |
| ! | CCAAAAAAAAAACGACATAA+GGG | - | chr4_1:3715030-3715049 | None:intergenic | 25.0% |
| ! | ACCAAAAAAAAAACGACATA+AGG | - | chr4_1:3715031-3715050 | None:intergenic | 25.0% |
| !!! | TTATGTCGTTTTTTTTTTGG+TGG | + | chr4_1:3715030-3715049 | Msa0529900:intron | 25.0% |
| ! | GACAATGTATAATATATGCA+AGG | - | chr4_1:3715078-3715097 | None:intergenic | 25.0% |
| !! | GTTGCAATTTTTGATATTTG+TGG | + | chr4_1:3715156-3715175 | Msa0529900:intron | 25.0% |
| !!! | ACAATTATGTCATGTTTTAG+GGG | - | chr4_1:3715213-3715232 | None:intergenic | 25.0% |
| !! | CAACAATTATGTCATGTTTT+AGG | - | chr4_1:3715215-3715234 | None:intergenic | 25.0% |
| !! | AACCATAATATCCAAGTTTT+TGG | - | chr4_1:3715550-3715569 | None:intergenic | 25.0% |
| !!! | GGATATTATGGTTATTTTTG+TGG | + | chr4_1:3715557-3715576 | Msa0529900:intron | 25.0% |
| ! | CAAATTACACAAACAAAAGA+AGG | - | chr4_1:3715681-3715700 | None:intergenic | 25.0% |
| ! | TCTAAGTAACAATTCATCTA+TGG | + | chr4_1:3715762-3715781 | Msa0529900:intron | 25.0% |
| ! | TTACTTGTTTGTTTATGCAT+TGG | + | chr4_1:3716192-3716211 | Msa0529900:intron | 25.0% |
| ! | TACTTGTTTGTTTATGCATT+GGG | + | chr4_1:3716193-3716212 | Msa0529900:intron | 25.0% |
| ! | AACGCATTACAAAAAATGAA+TGG | + | chr4_1:3716311-3716330 | Msa0529900:intron | 25.0% |
| ! | ACGCATTACAAAAAATGAAT+GGG | + | chr4_1:3716312-3716331 | Msa0529900:intron | 25.0% |
| ! | CAAGCAAAATTAAAGAATGA+TGG | + | chr4_1:3716350-3716369 | Msa0529900:intron | 25.0% |
| !! | TAATTAATTTTGTGGTGTAG+TGG | - | chr4_1:3716404-3716423 | None:intergenic | 25.0% |
| ! | TGAAAGAAAAACACAATGTA+TGG | - | chr4_1:3716731-3716750 | None:intergenic | 25.0% |
| !!! | TAATCACTTTTGTTTTGCTA+TGG | + | chr4_1:3716869-3716888 | Msa0529900:three_prime_UTR | 25.0% |
| AAATCTACAAGGAAAATGTC+AGG | + | chr4_1:3714377-3714396 | Msa0529900:CDS | 30.0% | |
| AATCTACAAGGAAAATGTCA+GGG | + | chr4_1:3714378-3714397 | Msa0529900:CDS | 30.0% | |
| CAAATAAGTCCAATTCAAAC+AGG | - | chr4_1:3714603-3714622 | None:intergenic | 30.0% | |
| !! | TTTTCATAAACTAGCTTGAC+AGG | - | chr4_1:3714844-3714863 | None:intergenic | 30.0% |
| ! | GTTTTCACTAACAAATAGTC+TGG | - | chr4_1:3714913-3714932 | None:intergenic | 30.0% |
| !!! | CCCTTATGTCGTTTTTTTTT+TGG | + | chr4_1:3715027-3715046 | Msa0529900:intron | 30.0% |
| TATAATATATGCAAGGTCCA+GGG | - | chr4_1:3715071-3715090 | None:intergenic | 30.0% | |
| ! | TTTTGATATTTGTGGGTACA+CGG | + | chr4_1:3715164-3715183 | Msa0529900:intron | 30.0% |
| TGACATAATTGTTGCAATTG+CGG | + | chr4_1:3715221-3715240 | Msa0529900:intron | 30.0% | |
| !! | TCTTGTGTGGTTTGTTTATT+TGG | + | chr4_1:3715302-3715321 | Msa0529900:intron | 30.0% |
| TAAGAATTGCAACTTAGACA+CGG | - | chr4_1:3715374-3715393 | None:intergenic | 30.0% | |
| TCTAAGTTGCAATTCTTACA+TGG | + | chr4_1:3715376-3715395 | Msa0529900:intron | 30.0% | |
| CTAAGTTGCAATTCTTACAT+GGG | + | chr4_1:3715377-3715396 | Msa0529900:intron | 30.0% | |
| CGCAAATCGCAATATAAAAA+TGG | - | chr4_1:3715459-3715478 | None:intergenic | 30.0% | |
| CACCAAAAACTTGGATATTA+TGG | + | chr4_1:3715545-3715564 | Msa0529900:intron | 30.0% | |
| !!! | TATGGTTATTTTTGTGGTTG+TGG | + | chr4_1:3715563-3715582 | Msa0529900:intron | 30.0% |
| !!! | ATGGTTATTTTTGTGGTTGT+GGG | + | chr4_1:3715564-3715583 | Msa0529900:intron | 30.0% |
| CATGACAATGATTCTCTATA+AGG | + | chr4_1:3715635-3715654 | Msa0529900:intron | 30.0% | |
| AAAGTAATTGAGAAGAACAC+AGG | + | chr4_1:3715964-3715983 | Msa0529900:CDS | 30.0% | |
| ATTACAAAAAATGAATGGGC+AGG | + | chr4_1:3716316-3716335 | Msa0529900:intron | 30.0% | |
| AGAAGCAAAATTCATTCTCA+AGG | - | chr4_1:3716772-3716791 | None:intergenic | 30.0% | |
| ! | GAATGAATTTTGCTTCTAGT+TGG | + | chr4_1:3716775-3716794 | Msa0529900:three_prime_UTR | 30.0% |
| ! | CAATATGATTTTGCTACTCT+CGG | + | chr4_1:3716822-3716841 | Msa0529900:three_prime_UTR | 30.0% |
| ATTTCAGTGACATAATGTCA+CGG | - | chr4_1:3716964-3716983 | None:intergenic | 30.0% | |
| ATGGAGATTCTTACTGTTTG+TGG | - | chr4_1:3714255-3714274 | None:intergenic | 35.0% | |
| AACTGAAAGGAAAACGATGA+TGG | - | chr4_1:3714274-3714293 | None:intergenic | 35.0% | |
| TATTAGAGGCCTGTTTGAAT+TGG | + | chr4_1:3714591-3714610 | Msa0529900:intron | 35.0% | |
| ACCTGCTAAATAAGCTGTTT+AGG | + | chr4_1:3714752-3714771 | Msa0529900:intron | 35.0% | |
| CCTGCTAAATAAGCTGTTTA+GGG | + | chr4_1:3714753-3714772 | Msa0529900:intron | 35.0% | |
| TAAGGGCTCTGTTTGAATAA+GGG | - | chr4_1:3715013-3715032 | None:intergenic | 35.0% | |
| ATAAGGGCTCTGTTTGAATA+AGG | - | chr4_1:3715014-3715033 | None:intergenic | 35.0% | |
| !!! | TGTCGTTTTTTTTTTGGTGG+TGG | + | chr4_1:3715033-3715052 | Msa0529900:intron | 35.0% |
| GTATAATATATGCAAGGTCC+AGG | - | chr4_1:3715072-3715091 | None:intergenic | 35.0% | |
| TTTGATATTTGTGGGTACAC+GGG | + | chr4_1:3715165-3715184 | Msa0529900:intron | 35.0% | |
| ! | TTCTCTGTTCAGGACATTTT+TGG | + | chr4_1:3715401-3715420 | Msa0529900:intron | 35.0% |
| GCCAGAAAATGTGGATAAAT+GGG | + | chr4_1:3715491-3715510 | Msa0529900:intron | 35.0% | |
| CCAGAAAATGTGGATAAATG+GGG | + | chr4_1:3715492-3715511 | Msa0529900:intron | 35.0% | |
| CAGAAAATGTGGATAAATGG+GGG | + | chr4_1:3715493-3715512 | Msa0529900:intron | 35.0% | |
| AGAAAATGTGGATAAATGGG+GGG | + | chr4_1:3715494-3715513 | Msa0529900:intron | 35.0% | |
| TTGTCATGCAATGACGAAAT+AGG | - | chr4_1:3715623-3715642 | None:intergenic | 35.0% | |
| ATACAGAACAACACAAGACA+CGG | - | chr4_1:3715712-3715731 | None:intergenic | 35.0% | |
| ! | CTTGTGTTGTTCTGTATGTT+TGG | + | chr4_1:3715715-3715734 | Msa0529900:intron | 35.0% |
| !! | GATATTTTTGCTATGCAGTG+AGG | + | chr4_1:3715798-3715817 | Msa0529900:intron | 35.0% |
| !! | CAATTACTTTTGCACCTTCA+TGG | - | chr4_1:3715954-3715973 | None:intergenic | 35.0% |
| TTGACGAGTTTAACATAGTC+AGG | - | chr4_1:3716024-3716043 | None:intergenic | 35.0% | |
| TGACTATGTTAAACTCGTCA+AGG | + | chr4_1:3716023-3716042 | Msa0529900:CDS | 35.0% | |
| TATGCATTGGGATACTTATC+AGG | + | chr4_1:3716205-3716224 | Msa0529900:intron | 35.0% | |
| ! | ACTATTGAAAGCACAAGTTG+TGG | + | chr4_1:3716278-3716297 | Msa0529900:intron | 35.0% |
| ! | TTAATTTTGTGGTGTAGTGG+TGG | - | chr4_1:3716401-3716420 | None:intergenic | 35.0% |
| CACATTCAACAGTTAAAACC+AGG | - | chr4_1:3716627-3716646 | None:intergenic | 35.0% | |
| !!! | CTGGTTTTAACTGTTGAATG+TGG | + | chr4_1:3716625-3716644 | Msa0529900:intron | 35.0% |
| !! | CTTCTAGTTGGTGTTATCTA+AGG | + | chr4_1:3716787-3716806 | Msa0529900:three_prime_UTR | 35.0% |
| TGCATTCATCACAAACTCGT+TGG | + | chr4_1:3714175-3714194 | Msa0529900:CDS | 40.0% | |
| TCATCACAAACTCGTTGGAT+TGG | + | chr4_1:3714180-3714199 | Msa0529900:CDS | 40.0% | |
| CCCTAAACAGCTTATTTAGC+AGG | - | chr4_1:3714756-3714775 | None:intergenic | 40.0% | |
| ! | TAAGCTGTTTAGGGCTTGTT+TGG | + | chr4_1:3714762-3714781 | Msa0529900:intron | 40.0% |
| !!! | TTTTTTTTTTGGTGGTGGCC+AGG | + | chr4_1:3715038-3715057 | Msa0529900:intron | 40.0% |
| !!! | TTTTTTTTTGGTGGTGGCCA+GGG | + | chr4_1:3715039-3715058 | Msa0529900:intron | 40.0% |
| !! | GCTTGTGTAGTTTGTTTGTC+TGG | + | chr4_1:3715330-3715349 | Msa0529900:intron | 40.0% |
| TTACATGGGTTTCTCTGTTC+AGG | + | chr4_1:3715391-3715410 | Msa0529900:intron | 40.0% | |
| CTTGATATCGCCAGAAAATG+TGG | + | chr4_1:3715482-3715501 | Msa0529900:intron | 40.0% | |
| CGCCAGAAAATGTGGATAAA+TGG | + | chr4_1:3715490-3715509 | Msa0529900:intron | 40.0% | |
| ! | CCCCATTTATCCACATTTTC+TGG | - | chr4_1:3715495-3715514 | None:intergenic | 40.0% |
| TTGTGGAGACACCAAAAACT+TGG | + | chr4_1:3715536-3715555 | Msa0529900:intron | 40.0% | |
| GTTGTTCTGTATGTTTGGTC+TGG | + | chr4_1:3715720-3715739 | Msa0529900:intron | 40.0% | |
| AAGGCAGTCATGATATCCAT+TGG | - | chr4_1:3715880-3715899 | None:intergenic | 40.0% | |
| !! | TTACTTTTGCACCTTCATGG+AGG | - | chr4_1:3715951-3715970 | None:intergenic | 40.0% |
| GTCAATCTTACACAACTGCA+AGG | - | chr4_1:3716499-3716518 | None:intergenic | 40.0% | |
| ! | TTGTGTAAGATTGACTCCGA+GGG | + | chr4_1:3716504-3716523 | Msa0529900:CDS | 40.0% |
| !! | TTTTCGATTGGTGTTTTGCC+TGG | + | chr4_1:3716606-3716625 | Msa0529900:intron | 40.0% |
| CTGTGCAAAGTTCCTTTGTA+TGG | + | chr4_1:3716931-3716950 | Msa0529900:three_prime_UTR | 40.0% | |
| AGTGACATAATGTCACGGTA+CGG | - | chr4_1:3716959-3716978 | None:intergenic | 40.0% | |
| TGTTTGAATAAGGGCCCGTA+TGG | - | chr4_1:3715004-3715023 | None:intergenic | 45.0% | |
| CGGGATTCATTCTGTAGTTG+TGG | + | chr4_1:3715184-3715203 | Msa0529900:intron | 45.0% | |
| TCTTATCTGTGCGTCTTGTG+TGG | + | chr4_1:3715289-3715308 | Msa0529900:intron | 45.0% | |
| CTTCCTAAGCACAAGTTGCA+AGG | - | chr4_1:3715899-3715918 | None:intergenic | 45.0% | |
| ACTTGTGCTTAGGAAGTCAC+TGG | + | chr4_1:3715903-3715922 | Msa0529900:CDS | 45.0% | |
| CTTAGGAAGTCACTGGCATA+TGG | + | chr4_1:3715910-3715929 | Msa0529900:CDS | 45.0% | |
| CGAGTTTAACATAGTCAGGC+TGG | - | chr4_1:3716020-3716039 | None:intergenic | 45.0% | |
| TGCGAAGACACTTGGAGAAT+GGG | + | chr4_1:3716089-3716108 | Msa0529900:CDS | 45.0% | |
| CTTACACAACTGCAAGGAGA+AGG | - | chr4_1:3716493-3716512 | None:intergenic | 45.0% | |
| ! | GTTGTGTAAGATTGACTCCG+AGG | + | chr4_1:3716503-3716522 | Msa0529900:intron | 45.0% |
| !! | TACCTTCCTAGCTTTTCCCT+CGG | - | chr4_1:3716523-3716542 | None:intergenic | 45.0% |
| GGAAAAGCTAGGAAGGTAAC+TGG | + | chr4_1:3716525-3716544 | Msa0529900:CDS | 45.0% | |
| TTATACCTTGACCACCACAC+AGG | - | chr4_1:3716556-3716575 | None:intergenic | 45.0% | |
| TTAACTGTTGAATGTGGCCG+TGG | + | chr4_1:3716631-3716650 | Msa0529900:intron | 45.0% | |
| GTGCTGCAGAACAACATTGT+AGG | - | chr4_1:3716683-3716702 | None:intergenic | 45.0% | |
| CCTCGTGAGCTTATCTCAGT+TGG | - | chr4_1:3715105-3715124 | None:intergenic | 50.0% | |
| CCAACTGAGATAAGCTCACG+AGG | + | chr4_1:3715102-3715121 | Msa0529900:intron | 50.0% | |
| GATGCAGCTGTTGCATGTTG+TGG | + | chr4_1:3715519-3715538 | Msa0529900:intron | 50.0% | |
| !! | ATGATATCCATTGGCTCGCC+TGG | - | chr4_1:3715871-3715890 | None:intergenic | 50.0% |
| CTGCCTTGCAACTTGTGCTT+AGG | + | chr4_1:3715893-3715912 | Msa0529900:CDS | 50.0% | |
| AGGAAGTCACTGGCATATGG+TGG | + | chr4_1:3715913-3715932 | Msa0529900:CDS | 50.0% | |
| GGAAGTCACTGGCATATGGT+GGG | + | chr4_1:3715914-3715933 | Msa0529900:CDS | 50.0% | |
| GTTCCTAGTGCGAAGACACT+TGG | + | chr4_1:3716081-3716100 | Msa0529900:CDS | 50.0% | |
| TCTCCAAGTGTCTTCGCACT+AGG | - | chr4_1:3716087-3716106 | None:intergenic | 50.0% | |
| GTGCGAAGACACTTGGAGAA+TGG | + | chr4_1:3716088-3716107 | Msa0529900:CDS | 50.0% | |
| AAGACACTTGGAGAATGGGC+TGG | + | chr4_1:3716093-3716112 | Msa0529900:CDS | 50.0% | |
| GGTGTAGTGGTGGTTCTTGT+TGG | - | chr4_1:3716391-3716410 | None:intergenic | 50.0% | |
| TTGACTCCGAGGGAAAAGCT+AGG | + | chr4_1:3716514-3716533 | Msa0529900:CDS | 50.0% | |
| CACGGTACGGTACCATACAA+AGG | - | chr4_1:3716946-3716965 | None:intergenic | 50.0% | |
| AAGGTCCAGGGTTTGAACCC+TGG | - | chr4_1:3715059-3715078 | None:intergenic | 55.0% | |
| TGGAATTCCAGGCGAGCCAA+TGG | + | chr4_1:3715861-3715880 | Msa0529900:CDS | 55.0% | |
| CTCCGAGGGAAAAGCTAGGA+AGG | + | chr4_1:3716518-3716537 | Msa0529900:CDS | 55.0% | |
| TGTTGAATGTGGCCGTGGTC+AGG | + | chr4_1:3716636-3716655 | Msa0529900:intron | 55.0% | |
| ! | TGTGGCCGTGGTCAGGATTT+TGG | + | chr4_1:3716643-3716662 | Msa0529900:intron | 55.0% |
| ! | GTGGCCGTGGTCAGGATTTT+GGG | + | chr4_1:3716644-3716663 | Msa0529900:intron | 55.0% |
| ! | TGGCCGTGGTCAGGATTTTG+GGG | + | chr4_1:3716645-3716664 | Msa0529900:intron | 55.0% |
| CCTCCCCAAAATCCTGACCA+CGG | - | chr4_1:3716651-3716670 | None:intergenic | 55.0% | |
| CTCACTGAACTCAACGCCGC+CGG | + | chr4_1:3714213-3714232 | Msa0529900:CDS | 60.0% | |
| TGGCTGCCGACGAAGAACTC+CGG | - | chr4_1:3714235-3714254 | None:intergenic | 60.0% | |
| TGGAATTCCAGCAGCAGGGG+CGG | - | chr4_1:3715851-3715870 | None:intergenic | 60.0% | |
| GCCTGGAATTCCAGCAGCAG+GGG | - | chr4_1:3715854-3715873 | None:intergenic | 60.0% | |
| CGCCTGGAATTCCAGCAGCA+GGG | - | chr4_1:3715855-3715874 | None:intergenic | 60.0% | |
| TCGCCTGGAATTCCAGCAGC+AGG | - | chr4_1:3715856-3715875 | None:intergenic | 60.0% | |
| !! | GCATATGGTGGGCTTGCACG+TGG | + | chr4_1:3715925-3715944 | Msa0529900:CDS | 60.0% |
| CTTGCACGTGGCCTCCATGA+AGG | + | chr4_1:3715937-3715956 | Msa0529900:CDS | 60.0% | |
| GGTAACTGGCTGCTCCTGTG+TGG | + | chr4_1:3716539-3716558 | Msa0529900:CDS | 60.0% | |
| AACTGGCTGCTCCTGTGTGG+TGG | + | chr4_1:3716542-3716561 | Msa0529900:CDS | 60.0% | |
| CTGCTCCTGTGTGGTGGTCA+AGG | + | chr4_1:3716548-3716567 | Msa0529900:CDS | 60.0% | |
| !! | CCGTGGTCAGGATTTTGGGG+AGG | + | chr4_1:3716648-3716667 | Msa0529900:intron | 60.0% |
| ACGCCGCCGGAGTTCTTCGT+CGG | + | chr4_1:3714226-3714245 | Msa0529900:CDS | 65.0% | |
| CTGCCGACGAAGAACTCCGG+CGG | - | chr4_1:3714232-3714251 | None:intergenic | 65.0% | |
| GGTGGCCAGGGTTCAAACCC+TGG | + | chr4_1:3715051-3715070 | Msa0529900:intron | 65.0% | |
| GCCCCTGCTGCTGGAATTCC+AGG | + | chr4_1:3715850-3715869 | Msa0529900:CDS | 65.0% | |
| CCAGCAGCAGGGGCGGCAAC+AGG | - | chr4_1:3715844-3715863 | None:intergenic | 75.0% | |
| CCTGTTGCCGCCCCTGCTGC+TGG | + | chr4_1:3715841-3715860 | Msa0529900:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 3714168 | 3716993 | 3714168 | ID=Msa0529900;Name=Msa0529900 |
| chr4_1 | mRNA | 3714168 | 3716993 | 3714168 | ID=Msa0529900-mRNA-1;Parent=Msa0529900;Name=Msa0529900-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.8|1|0.75|1|5|276|188 |
| chr4_1 | exon | 3714168 | 3714260 | 3714168 | ID=Msa0529900-mRNA-1:exon:1088;Parent=Msa0529900-mRNA-1 |
| chr4_1 | exon | 3714353 | 3714399 | 3714353 | ID=Msa0529900-mRNA-1:exon:1089;Parent=Msa0529900-mRNA-1 |
| chr4_1 | exon | 3715816 | 3716116 | 3715816 | ID=Msa0529900-mRNA-1:exon:1090;Parent=Msa0529900-mRNA-1 |
| chr4_1 | exon | 3716504 | 3716569 | 3716504 | ID=Msa0529900-mRNA-1:exon:1091;Parent=Msa0529900-mRNA-1 |
| chr4_1 | exon | 3716658 | 3716993 | 3716658 | ID=Msa0529900-mRNA-1:exon:1092;Parent=Msa0529900-mRNA-1 |
| chr4_1 | CDS | 3714168 | 3714260 | 3714168 | ID=Msa0529900-mRNA-1:cds;Parent=Msa0529900-mRNA-1 |
| chr4_1 | CDS | 3714353 | 3714399 | 3714353 | ID=Msa0529900-mRNA-1:cds;Parent=Msa0529900-mRNA-1 |
| chr4_1 | CDS | 3715816 | 3716116 | 3715816 | ID=Msa0529900-mRNA-1:cds;Parent=Msa0529900-mRNA-1 |
| chr4_1 | CDS | 3716504 | 3716569 | 3716504 | ID=Msa0529900-mRNA-1:cds;Parent=Msa0529900-mRNA-1 |
| chr4_1 | CDS | 3716658 | 3716717 | 3716658 | ID=Msa0529900-mRNA-1:cds;Parent=Msa0529900-mRNA-1 |
| chr4_1 | three_prime_UTR | 3716718 | 3716993 | 3716718 | ID=Msa0529900-mRNA-1:three_prime_utr;Parent=Msa0529900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
