Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0485370 | XP_024627754.1 | 97.368 | 190 | 5 | 0 | 3 | 192 | 67 | 256 | 4.87e-132 | 391 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0485370 | sp|Q9FNL7|PTR3_ARATH | 61.257 | 191 | 74 | 0 | 2 | 192 | 111 | 301 | 1.14e-77 | 245 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0485370 | A0A072VHL1 | 97.368 | 190 | 5 | 0 | 3 | 192 | 67 | 256 | 2.33e-132 | 391 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0016570 | Msa0485370 | 0.815478 | 9.058893e-52 | -8.615850e-47 |
Msa0016580 | Msa0485370 | 0.808711 | 2.708713e-50 | -8.615850e-47 |
Msa0110270 | Msa0485370 | 0.801481 | 8.823711e-49 | -8.615850e-47 |
Msa0142220 | Msa0485370 | 0.836138 | 1.115560e-56 | -8.615850e-47 |
Msa0232850 | Msa0485370 | 0.804350 | 2.253827e-49 | -8.615850e-47 |
Msa0452900 | Msa0485370 | 0.807436 | 5.060654e-50 | -8.615850e-47 |
Msa0273100 | Msa0485370 | 0.812920 | 3.324785e-51 | -8.615850e-47 |
Msa0306460 | Msa0485370 | 0.801710 | 7.917613e-49 | -8.615850e-47 |
Msa0363300 | Msa0485370 | 0.814581 | 1.432667e-51 | -8.615850e-47 |
Msa0485370 | Msa0604350 | 0.801766 | 7.711979e-49 | -8.615850e-47 |
Msa0485370 | Msa0636170 | 0.813148 | 2.963148e-51 | -8.615850e-47 |
Msa0485370 | Msa0678930 | 0.811121 | 8.202152e-51 | -8.615850e-47 |
Msa0485370 | Msa0694370 | 0.801817 | 7.530055e-49 | -8.615850e-47 |
Msa0485370 | Msa0726140 | 0.807471 | 4.972650e-50 | -8.615850e-47 |
Msa0485370 | Msa0729800 | 0.806503 | 7.972097e-50 | -8.615850e-47 |
Msa0485370 | Msa0733290 | 0.816182 | 6.307934e-52 | -8.615850e-47 |
Msa0485370 | Msa0741990 | 0.804167 | 2.459413e-49 | -8.615850e-47 |
Msa0485370 | Msa0743810 | 0.831637 | 1.490985e-55 | -8.615850e-47 |
Msa0485370 | Msa0745060 | 0.821603 | 3.698766e-53 | -8.615850e-47 |
Msa0485370 | Msa0767720 | 0.800164 | 1.638516e-48 | -8.615850e-47 |
Msa0485370 | Msa0789250 | 0.806310 | 8.754916e-50 | -8.615850e-47 |
Msa0485370 | Msa0811080 | 0.846604 | 1.957132e-59 | -8.615850e-47 |
Msa0485370 | Msa0825860 | 0.815810 | 7.637753e-52 | -8.615850e-47 |
Msa0485370 | Msa0826750 | 0.957242 | 4.354590e-115 | -8.615850e-47 |
Msa0485370 | Msa0885290 | 0.811167 | 8.016327e-51 | -8.615850e-47 |
Msa0485370 | Msa0888370 | 0.803728 | 3.035506e-49 | -8.615850e-47 |
Msa0485370 | Msa0989060 | 0.805514 | 1.286629e-49 | -8.615850e-47 |
Msa0485370 | Msa1024240 | 0.807361 | 5.249273e-50 | -8.615850e-47 |
Msa0485370 | Msa1092990 | 0.815252 | 1.016696e-51 | -8.615850e-47 |
Msa0485370 | Msa1146110 | 0.831046 | 2.084259e-55 | -8.615850e-47 |
Msa0485370 | Msa1160670 | 0.801944 | 7.089736e-49 | -8.615850e-47 |
Msa0485370 | Msa1160690 | 0.800007 | 1.763852e-48 | -8.615850e-47 |
Msa0485370 | Msa1187940 | 0.834242 | 3.356148e-56 | -8.615850e-47 |
Msa0485370 | Msa1187950 | 0.827681 | 1.367506e-54 | -8.615850e-47 |
Msa0485370 | Msa1269670 | 0.818696 | 1.713013e-52 | -8.615850e-47 |
Msa0485370 | Msa1270230 | 0.808293 | 3.326193e-50 | -8.615850e-47 |
Msa0485370 | Msa1283330 | 0.807460 | 5.000754e-50 | -8.615850e-47 |
Msa0485370 | Msa1285930 | 0.818618 | 1.784183e-52 | -8.615850e-47 |
Msa0485370 | Msa1287810 | 0.803023 | 4.248220e-49 | -8.615850e-47 |
Msa0485370 | Msa1340590 | 0.810930 | 9.021720e-51 | -8.615850e-47 |
Msa0485370 | Msa1397580 | 0.802293 | 6.008121e-49 | -8.615850e-47 |
Msa0485370 | Msa1422180 | 0.816437 | 5.532666e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0485370 | MtrunA17_Chr1g0166791 | 97.368 | 190 | 5 | 0 | 3 | 192 | 111 | 300 | 5.99e-135 | 390 |
Msa0485370 | MtrunA17_Chr1g0166741 | 84.375 | 192 | 30 | 0 | 1 | 192 | 112 | 303 | 9.86e-116 | 340 |
Msa0485370 | MtrunA17_Chr1g0166771 | 82.292 | 192 | 34 | 0 | 1 | 192 | 76 | 267 | 3.38e-114 | 335 |
Msa0485370 | MtrunA17_Chr1g0166731 | 75.916 | 191 | 46 | 0 | 2 | 192 | 8 | 198 | 4.04e-104 | 307 |
Msa0485370 | MtrunA17_Chr1g0166711 | 76.842 | 190 | 44 | 0 | 3 | 192 | 112 | 301 | 7.14e-103 | 308 |
Msa0485370 | MtrunA17_Chr1g0187241 | 71.649 | 194 | 53 | 1 | 1 | 192 | 111 | 304 | 6.79e-98 | 295 |
Msa0485370 | MtrunA17_Chr7g0261791 | 66.667 | 192 | 62 | 1 | 3 | 192 | 116 | 307 | 3.25e-85 | 263 |
Msa0485370 | MtrunA17_Chr7g0261661 | 61.579 | 190 | 72 | 1 | 4 | 192 | 1 | 190 | 6.16e-83 | 254 |
Msa0485370 | MtrunA17_Chr7g0261731 | 59.686 | 191 | 76 | 1 | 3 | 192 | 118 | 308 | 4.47e-82 | 247 |
Msa0485370 | MtrunA17_Chr7g0261751 | 59.474 | 190 | 76 | 1 | 3 | 191 | 118 | 307 | 2.68e-80 | 248 |
Msa0485370 | MtrunA17_Chr7g0261881 | 58.639 | 191 | 78 | 1 | 3 | 192 | 114 | 304 | 5.19e-80 | 249 |
Msa0485370 | MtrunA17_Chr7g0261771 | 59.686 | 191 | 76 | 1 | 3 | 192 | 118 | 308 | 1.39e-79 | 248 |
Msa0485370 | MtrunA17_Chr7g0261851 | 62.105 | 190 | 71 | 1 | 3 | 191 | 115 | 304 | 5.39e-79 | 246 |
Msa0485370 | MtrunA17_Chr7g0261811 | 57.068 | 191 | 81 | 1 | 3 | 192 | 114 | 304 | 3.46e-77 | 242 |
Msa0485370 | MtrunA17_Chr3g0114501 | 48.691 | 191 | 93 | 2 | 3 | 192 | 109 | 295 | 5.72e-58 | 191 |
Msa0485370 | MtrunA17_Chr8g0375291 | 44.444 | 189 | 102 | 1 | 3 | 191 | 127 | 312 | 1.14e-47 | 164 |
Msa0485370 | MtrunA17_Chr8g0375311 | 43.386 | 189 | 104 | 1 | 3 | 191 | 127 | 312 | 6.00e-47 | 162 |
Msa0485370 | MtrunA17_Chr8g0375331 | 46.429 | 168 | 87 | 1 | 3 | 170 | 111 | 275 | 1.16e-45 | 158 |
Msa0485370 | MtrunA17_Chr8g0375351 | 44.751 | 181 | 93 | 2 | 3 | 183 | 127 | 300 | 1.63e-45 | 158 |
Msa0485370 | MtrunA17_Chr3g0104011 | 46.842 | 190 | 97 | 3 | 3 | 192 | 109 | 294 | 2.24e-45 | 157 |
Msa0485370 | MtrunA17_Chr8g0375341 | 43.158 | 190 | 105 | 1 | 3 | 192 | 127 | 313 | 2.24e-45 | 157 |
Msa0485370 | MtrunA17_Chr3g0112651 | 39.583 | 192 | 109 | 3 | 2 | 193 | 20 | 204 | 1.20e-44 | 147 |
Msa0485370 | MtrunA17_Chr7g0240381 | 43.333 | 180 | 97 | 3 | 3 | 182 | 116 | 290 | 1.67e-44 | 155 |
Msa0485370 | MtrunA17_Chr8g0375321 | 40.526 | 190 | 110 | 1 | 3 | 192 | 124 | 310 | 2.47e-44 | 154 |
Msa0485370 | MtrunA17_Chr7g0241741 | 43.915 | 189 | 101 | 2 | 3 | 191 | 109 | 292 | 5.59e-44 | 153 |
Msa0485370 | MtrunA17_Chr3g0112611 | 40.625 | 192 | 107 | 4 | 1 | 192 | 117 | 301 | 2.84e-42 | 149 |
Msa0485370 | MtrunA17_Chr5g0422881 | 45.833 | 168 | 89 | 1 | 3 | 170 | 107 | 272 | 6.56e-42 | 148 |
Msa0485370 | MtrunA17_Chr3g0142111 | 40.838 | 191 | 107 | 3 | 3 | 191 | 133 | 319 | 1.55e-41 | 142 |
Msa0485370 | MtrunA17_Chr4g0008651 | 41.477 | 176 | 99 | 2 | 3 | 178 | 121 | 292 | 5.05e-41 | 145 |
Msa0485370 | MtrunA17_Chr4g0005901 | 42.328 | 189 | 104 | 2 | 3 | 191 | 119 | 302 | 1.03e-40 | 145 |
Msa0485370 | MtrunA17_Chr8g0375361 | 40.000 | 190 | 111 | 1 | 3 | 192 | 126 | 312 | 2.71e-40 | 144 |
Msa0485370 | MtrunA17_Chr3g0142091 | 43.750 | 192 | 104 | 3 | 3 | 192 | 113 | 302 | 5.31e-40 | 143 |
Msa0485370 | MtrunA17_Chr3g0112671 | 42.604 | 169 | 92 | 2 | 3 | 171 | 120 | 283 | 1.36e-39 | 142 |
Msa0485370 | MtrunA17_Chr3g0142101 | 39.583 | 192 | 110 | 3 | 3 | 192 | 122 | 309 | 2.53e-39 | 141 |
Msa0485370 | MtrunA17_Chr2g0284701 | 40.000 | 175 | 103 | 2 | 3 | 175 | 119 | 293 | 1.26e-38 | 139 |
Msa0485370 | MtrunA17_Chr4g0054891 | 35.938 | 192 | 122 | 1 | 1 | 192 | 195 | 385 | 3.80e-38 | 138 |
Msa0485370 | MtrunA17_Chr7g0217461 | 36.458 | 192 | 119 | 2 | 1 | 192 | 109 | 297 | 1.44e-37 | 136 |
Msa0485370 | MtrunA17_Chr5g0400371 | 38.418 | 177 | 108 | 1 | 16 | 192 | 212 | 387 | 2.83e-37 | 136 |
Msa0485370 | MtrunA17_Chr5g0399061 | 38.542 | 192 | 114 | 2 | 3 | 192 | 114 | 303 | 5.69e-37 | 134 |
Msa0485370 | MtrunA17_Chr7g0255611 | 38.690 | 168 | 101 | 1 | 3 | 170 | 116 | 281 | 8.11e-37 | 134 |
Msa0485370 | MtrunA17_Chr4g0056431 | 38.542 | 192 | 116 | 1 | 3 | 192 | 112 | 303 | 1.39e-36 | 134 |
Msa0485370 | MtrunA17_Chr7g0214461 | 36.842 | 190 | 118 | 2 | 3 | 192 | 165 | 352 | 3.83e-36 | 132 |
Msa0485370 | MtrunA17_Chr5g0399071 | 42.708 | 192 | 107 | 2 | 3 | 192 | 112 | 302 | 1.46e-35 | 130 |
Msa0485370 | MtrunA17_Chr3g0133341 | 33.679 | 193 | 124 | 2 | 3 | 192 | 101 | 292 | 1.48e-35 | 130 |
Msa0485370 | MtrunA17_Chr7g0218851 | 37.989 | 179 | 107 | 3 | 16 | 192 | 146 | 322 | 2.10e-35 | 130 |
Msa0485370 | MtrunA17_Chr1g0213711 | 37.037 | 189 | 116 | 3 | 3 | 191 | 108 | 293 | 4.29e-35 | 129 |
Msa0485370 | MtrunA17_Chr5g0439381 | 38.798 | 183 | 110 | 1 | 3 | 183 | 115 | 297 | 1.02e-34 | 128 |
Msa0485370 | MtrunA17_Chr7g0255621 | 38.095 | 168 | 102 | 1 | 3 | 170 | 107 | 272 | 2.28e-34 | 127 |
Msa0485370 | MtrunA17_Chr7g0255601 | 39.286 | 168 | 100 | 1 | 3 | 170 | 114 | 279 | 1.69e-33 | 125 |
Msa0485370 | MtrunA17_Chr5g0415961 | 38.411 | 151 | 91 | 1 | 3 | 153 | 111 | 259 | 5.18e-33 | 124 |
Msa0485370 | MtrunA17_Chr4g0063591 | 41.053 | 190 | 104 | 2 | 3 | 192 | 109 | 290 | 3.05e-32 | 121 |
Msa0485370 | MtrunA17_Chr4g0060001 | 37.500 | 192 | 115 | 1 | 3 | 194 | 116 | 302 | 7.09e-32 | 120 |
Msa0485370 | MtrunA17_Chr3g0082631 | 43.396 | 159 | 70 | 2 | 1 | 159 | 12 | 150 | 1.97e-31 | 118 |
Msa0485370 | MtrunA17_Chr4g0014871 | 37.912 | 182 | 98 | 4 | 1 | 179 | 115 | 284 | 5.27e-31 | 118 |
Msa0485370 | MtrunA17_Chr7g0240281 | 36.788 | 193 | 119 | 2 | 3 | 192 | 111 | 303 | 1.13e-30 | 117 |
Msa0485370 | MtrunA17_Chr4g0014801 | 42.963 | 135 | 73 | 2 | 25 | 157 | 128 | 260 | 1.22e-30 | 117 |
Msa0485370 | MtrunA17_Chr4g0014791 | 41.447 | 152 | 75 | 3 | 8 | 157 | 121 | 260 | 2.13e-30 | 116 |
Msa0485370 | MtrunA17_Chr4g0014781 | 40.385 | 156 | 79 | 3 | 8 | 161 | 121 | 264 | 2.60e-30 | 116 |
Msa0485370 | MtrunA17_Chr4g0069581 | 32.275 | 189 | 122 | 2 | 3 | 191 | 73 | 255 | 8.31e-30 | 114 |
Msa0485370 | MtrunA17_Chr7g0240271 | 35.233 | 193 | 120 | 2 | 3 | 192 | 111 | 301 | 8.47e-30 | 115 |
Msa0485370 | MtrunA17_Chr7g0214731 | 33.333 | 186 | 123 | 1 | 8 | 192 | 157 | 342 | 3.34e-29 | 113 |
Msa0485370 | MtrunA17_Chr7g0235521 | 34.896 | 192 | 120 | 2 | 4 | 192 | 1 | 190 | 4.57e-29 | 112 |
Msa0485370 | MtrunA17_Chr7g0240151 | 34.896 | 192 | 120 | 2 | 4 | 192 | 1 | 190 | 4.60e-29 | 112 |
Msa0485370 | MtrunA17_Chr8g0379971 | 34.031 | 191 | 108 | 3 | 3 | 175 | 107 | 297 | 1.03e-28 | 112 |
Msa0485370 | MtrunA17_Chr8g0362711 | 36.424 | 151 | 94 | 1 | 3 | 153 | 111 | 259 | 1.37e-28 | 111 |
Msa0485370 | MtrunA17_Chr7g0240211 | 34.896 | 192 | 120 | 2 | 4 | 192 | 1 | 190 | 1.87e-28 | 110 |
Msa0485370 | MtrunA17_Chr4g0014861 | 41.406 | 128 | 73 | 1 | 36 | 161 | 13 | 140 | 1.95e-28 | 110 |
Msa0485370 | MtrunA17_Chr7g0240181 | 34.896 | 192 | 120 | 2 | 4 | 192 | 1 | 190 | 2.00e-28 | 110 |
Msa0485370 | MtrunA17_Chr4g0059991 | 33.508 | 191 | 124 | 3 | 3 | 192 | 109 | 297 | 3.86e-28 | 110 |
Msa0485370 | MtrunA17_Chr7g0240131 | 34.375 | 192 | 121 | 2 | 4 | 192 | 1 | 190 | 4.08e-28 | 109 |
Msa0485370 | MtrunA17_Chr5g0415791 | 36.585 | 164 | 102 | 1 | 3 | 164 | 116 | 279 | 5.57e-28 | 109 |
Msa0485370 | MtrunA17_Chr4g0014841 | 38.849 | 139 | 81 | 2 | 25 | 161 | 128 | 264 | 6.75e-28 | 109 |
Msa0485370 | MtrunA17_Chr4g0011041 | 32.353 | 170 | 114 | 1 | 1 | 170 | 121 | 289 | 1.53e-26 | 105 |
Msa0485370 | MtrunA17_Chr8g0362801 | 35.366 | 164 | 102 | 3 | 4 | 164 | 1 | 163 | 1.80e-26 | 105 |
Msa0485370 | MtrunA17_Chr4g0011471 | 32.632 | 190 | 125 | 2 | 3 | 192 | 103 | 289 | 1.85e-26 | 105 |
Msa0485370 | MtrunA17_Chr2g0276751 | 31.868 | 182 | 121 | 3 | 1 | 182 | 123 | 301 | 2.00e-26 | 105 |
Msa0485370 | MtrunA17_Chr1g0193391 | 30.319 | 188 | 120 | 4 | 1 | 182 | 102 | 284 | 2.61e-26 | 105 |
Msa0485370 | MtrunA17_Chr4g0059971 | 32.124 | 193 | 123 | 5 | 3 | 194 | 121 | 306 | 9.59e-25 | 100 |
Msa0485370 | MtrunA17_Chr8g0353031 | 40.764 | 157 | 73 | 1 | 3 | 159 | 105 | 241 | 1.64e-24 | 99.8 |
Msa0485370 | MtrunA17_Chr4g0060061 | 38.017 | 121 | 75 | 0 | 29 | 149 | 8 | 128 | 2.16e-24 | 93.2 |
Msa0485370 | MtrunA17_Chr8g0379991 | 28.251 | 223 | 124 | 5 | 3 | 192 | 67 | 286 | 3.75e-24 | 99.0 |
Msa0485370 | MtrunA17_Chr4g0059981 | 32.099 | 162 | 108 | 2 | 3 | 163 | 118 | 278 | 7.09e-24 | 98.2 |
Msa0485370 | MtrunA17_Chr2g0325951 | 31.138 | 167 | 110 | 2 | 3 | 169 | 106 | 267 | 9.09e-24 | 97.8 |
Msa0485370 | MtrunA17_Chr2g0326211 | 32.911 | 158 | 101 | 2 | 12 | 169 | 115 | 267 | 1.05e-23 | 97.4 |
Msa0485370 | MtrunA17_Chr7g0271221 | 29.592 | 196 | 126 | 4 | 5 | 192 | 94 | 285 | 1.84e-23 | 97.1 |
Msa0485370 | MtrunA17_Chr3g0077151 | 35.075 | 134 | 84 | 1 | 36 | 166 | 132 | 265 | 2.56e-23 | 96.3 |
Msa0485370 | MtrunA17_Chr2g0325961 | 29.032 | 155 | 105 | 1 | 15 | 169 | 118 | 267 | 1.42e-20 | 88.6 |
Msa0485370 | MtrunA17_Chr2g0331521 | 28.426 | 197 | 124 | 8 | 3 | 194 | 109 | 293 | 1.43e-20 | 88.6 |
Msa0485370 | MtrunA17_Chr1g0147631 | 28.191 | 188 | 125 | 4 | 3 | 186 | 112 | 293 | 1.73e-20 | 88.6 |
Msa0485370 | MtrunA17_Chr7g0234151 | 30.108 | 186 | 114 | 4 | 1 | 182 | 1 | 174 | 1.81e-20 | 87.8 |
Msa0485370 | MtrunA17_Chr7g0234381 | 29.348 | 184 | 118 | 3 | 1 | 183 | 1 | 173 | 4.45e-20 | 86.7 |
Msa0485370 | MtrunA17_Chr5g0415841 | 31.481 | 162 | 109 | 1 | 4 | 163 | 1 | 162 | 4.61e-20 | 87.0 |
Msa0485370 | MtrunA17_Chr2g0331471 | 32.298 | 161 | 106 | 3 | 3 | 162 | 175 | 333 | 5.81e-20 | 87.0 |
Msa0485370 | MtrunA17_Chr2g0331481 | 32.530 | 166 | 99 | 5 | 3 | 162 | 112 | 270 | 1.88e-19 | 85.5 |
Msa0485370 | MtrunA17_Chr8g0362781 | 31.282 | 195 | 124 | 5 | 3 | 191 | 117 | 307 | 2.40e-19 | 85.1 |
Msa0485370 | MtrunA17_Chr7g0234181 | 30.168 | 179 | 113 | 3 | 6 | 183 | 1 | 168 | 3.06e-19 | 84.3 |
Msa0485370 | MtrunA17_Chr1g0157601 | 30.247 | 162 | 108 | 3 | 3 | 164 | 102 | 258 | 4.93e-19 | 84.3 |
Msa0485370 | MtrunA17_Chr2g0331511 | 29.897 | 194 | 126 | 6 | 3 | 194 | 108 | 293 | 7.06e-19 | 84.0 |
Msa0485370 | MtrunA17_Chr4g0003761 | 32.099 | 162 | 105 | 4 | 3 | 162 | 117 | 275 | 1.03e-18 | 83.2 |
Msa0485370 | MtrunA17_Chr1g0157611 | 26.797 | 153 | 107 | 3 | 10 | 162 | 110 | 257 | 1.48e-15 | 73.9 |
Msa0485370 | MtrunA17_Chr1g0157621 | 26.087 | 184 | 128 | 5 | 9 | 192 | 73 | 248 | 1.56e-15 | 73.9 |
Msa0485370 | MtrunA17_Chr8g0390331 | 25.946 | 185 | 130 | 3 | 3 | 182 | 102 | 284 | 1.72e-15 | 73.9 |
Msa0485370 | MtrunA17_Chr7g0261841 | 57.407 | 54 | 22 | 1 | 4 | 56 | 1 | 54 | 2.10e-15 | 68.2 |
Msa0485370 | MtrunA17_Chr6g0451841 | 32.192 | 146 | 76 | 4 | 50 | 175 | 127 | 269 | 7.12e-15 | 72.0 |
Msa0485370 | MtrunA17_Chr1g0147591 | 27.820 | 133 | 93 | 1 | 40 | 169 | 3 | 135 | 3.21e-14 | 68.2 |
Msa0485370 | MtrunA17_Chr7g0261831 | 56.250 | 48 | 20 | 1 | 146 | 192 | 1 | 48 | 2.19e-13 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0485370 | AT5G46050.2 | 61.376 | 189 | 73 | 0 | 4 | 192 | 1 | 189 | 2.56e-79 | 244 |
Msa0485370 | AT5G46050.1 | 61.257 | 191 | 74 | 0 | 2 | 192 | 111 | 301 | 1.16e-78 | 245 |
Msa0485370 | AT5G46040.1 | 58.947 | 190 | 78 | 0 | 3 | 192 | 112 | 301 | 1.45e-73 | 232 |
Msa0485370 | AT2G40460.1 | 46.114 | 193 | 99 | 3 | 1 | 192 | 107 | 295 | 9.04e-55 | 183 |
Msa0485370 | AT1G62200.1 | 46.316 | 190 | 102 | 0 | 3 | 192 | 137 | 326 | 2.84e-50 | 171 |
Msa0485370 | AT1G62200.2 | 46.561 | 189 | 101 | 0 | 3 | 191 | 137 | 325 | 1.00e-49 | 170 |
Msa0485370 | AT1G62200.3 | 46.561 | 189 | 101 | 0 | 3 | 191 | 151 | 339 | 1.36e-49 | 170 |
Msa0485370 | AT3G54140.1 | 45.833 | 192 | 100 | 2 | 1 | 192 | 107 | 294 | 6.65e-47 | 162 |
Msa0485370 | AT3G54140.2 | 45.833 | 192 | 100 | 2 | 1 | 192 | 107 | 294 | 6.65e-47 | 162 |
Msa0485370 | AT2G02040.1 | 44.211 | 190 | 103 | 1 | 3 | 192 | 126 | 312 | 5.92e-46 | 159 |
Msa0485370 | AT3G53960.1 | 44.444 | 180 | 94 | 3 | 3 | 182 | 122 | 295 | 2.04e-44 | 155 |
Msa0485370 | AT2G37900.2 | 43.182 | 176 | 95 | 2 | 3 | 178 | 44 | 214 | 2.92e-44 | 153 |
Msa0485370 | AT5G01180.2 | 44.503 | 191 | 93 | 2 | 1 | 187 | 108 | 289 | 3.89e-44 | 154 |
Msa0485370 | AT5G01180.3 | 44.503 | 191 | 93 | 2 | 1 | 187 | 108 | 289 | 3.89e-44 | 154 |
Msa0485370 | AT5G01180.1 | 44.503 | 191 | 93 | 2 | 1 | 187 | 108 | 289 | 3.89e-44 | 154 |
Msa0485370 | AT2G37900.1 | 43.182 | 176 | 95 | 2 | 3 | 178 | 123 | 293 | 7.16e-44 | 154 |
Msa0485370 | AT2G02020.2 | 42.077 | 183 | 96 | 2 | 3 | 178 | 127 | 306 | 2.95e-41 | 146 |
Msa0485370 | AT1G12110.1 | 42.708 | 192 | 107 | 1 | 3 | 191 | 112 | 303 | 1.29e-40 | 145 |
Msa0485370 | AT2G02020.1 | 44.848 | 165 | 88 | 1 | 3 | 167 | 127 | 288 | 1.31e-40 | 144 |
Msa0485370 | AT2G26690.2 | 40.741 | 189 | 104 | 2 | 3 | 191 | 76 | 256 | 1.34e-37 | 136 |
Msa0485370 | AT2G26690.3 | 40.741 | 189 | 104 | 2 | 3 | 191 | 64 | 244 | 1.59e-37 | 136 |
Msa0485370 | AT2G26690.1 | 40.741 | 189 | 104 | 2 | 3 | 191 | 109 | 289 | 2.09e-37 | 136 |
Msa0485370 | AT1G68570.2 | 44.311 | 167 | 91 | 1 | 3 | 169 | 78 | 242 | 5.24e-37 | 135 |
Msa0485370 | AT1G68570.1 | 44.311 | 167 | 91 | 1 | 3 | 169 | 108 | 272 | 6.56e-37 | 135 |
Msa0485370 | AT5G19640.1 | 37.368 | 190 | 114 | 2 | 3 | 192 | 144 | 328 | 4.36e-35 | 130 |
Msa0485370 | AT1G69850.1 | 39.073 | 151 | 89 | 1 | 3 | 153 | 110 | 257 | 6.77e-35 | 129 |
Msa0485370 | AT4G21680.1 | 39.896 | 193 | 110 | 5 | 1 | 192 | 111 | 298 | 1.81e-33 | 125 |
Msa0485370 | AT1G32450.1 | 37.017 | 181 | 108 | 4 | 16 | 192 | 135 | 313 | 4.49e-33 | 124 |
Msa0485370 | AT3G21670.1 | 40.476 | 168 | 98 | 1 | 3 | 168 | 114 | 281 | 5.76e-33 | 124 |
Msa0485370 | AT3G54450.1 | 38.608 | 158 | 91 | 2 | 32 | 189 | 109 | 260 | 3.41e-32 | 121 |
Msa0485370 | AT1G27040.2 | 37.086 | 151 | 95 | 0 | 3 | 153 | 108 | 258 | 3.58e-32 | 121 |
Msa0485370 | AT1G27040.1 | 37.086 | 151 | 95 | 0 | 3 | 153 | 112 | 262 | 3.58e-32 | 122 |
Msa0485370 | AT1G27040.3 | 37.086 | 151 | 95 | 0 | 3 | 153 | 80 | 230 | 3.81e-32 | 121 |
Msa0485370 | AT3G45690.1 | 36.310 | 168 | 101 | 3 | 3 | 170 | 103 | 264 | 8.12e-32 | 120 |
Msa0485370 | AT3G45720.1 | 39.306 | 173 | 98 | 4 | 3 | 175 | 104 | 269 | 6.64e-31 | 118 |
Msa0485370 | AT1G59740.1 | 34.320 | 169 | 111 | 0 | 1 | 169 | 124 | 292 | 7.31e-31 | 118 |
Msa0485370 | AT3G45680.1 | 36.416 | 173 | 104 | 3 | 3 | 175 | 105 | 271 | 4.19e-30 | 115 |
Msa0485370 | AT3G45650.1 | 35.556 | 180 | 110 | 3 | 3 | 182 | 107 | 280 | 4.81e-30 | 115 |
Msa0485370 | AT3G45650.2 | 35.556 | 180 | 110 | 3 | 3 | 182 | 107 | 280 | 6.22e-30 | 115 |
Msa0485370 | AT3G45710.1 | 36.994 | 173 | 103 | 3 | 1 | 173 | 104 | 270 | 6.34e-30 | 115 |
Msa0485370 | AT5G13400.1 | 36.709 | 158 | 96 | 2 | 3 | 156 | 149 | 306 | 1.67e-29 | 114 |
Msa0485370 | AT3G45700.1 | 37.288 | 177 | 105 | 3 | 1 | 177 | 99 | 269 | 2.28e-29 | 114 |
Msa0485370 | AT1G33440.1 | 36.571 | 175 | 107 | 2 | 1 | 174 | 121 | 292 | 3.77e-29 | 113 |
Msa0485370 | AT3G16180.1 | 34.706 | 170 | 108 | 2 | 3 | 169 | 108 | 277 | 1.33e-27 | 108 |
Msa0485370 | AT1G22540.1 | 37.423 | 163 | 93 | 4 | 1 | 160 | 113 | 269 | 5.73e-27 | 107 |
Msa0485370 | AT1G18880.1 | 32.632 | 190 | 124 | 2 | 3 | 192 | 104 | 289 | 6.92e-27 | 107 |
Msa0485370 | AT5G28470.1 | 37.423 | 163 | 99 | 2 | 3 | 164 | 102 | 262 | 7.89e-27 | 106 |
Msa0485370 | AT5G28470.2 | 37.423 | 163 | 99 | 2 | 3 | 164 | 102 | 262 | 8.02e-27 | 106 |
Msa0485370 | AT3G45660.2 | 32.778 | 180 | 115 | 3 | 3 | 182 | 127 | 300 | 7.10e-26 | 104 |
Msa0485370 | AT3G45660.1 | 32.778 | 180 | 115 | 3 | 3 | 182 | 106 | 279 | 7.16e-26 | 103 |
Msa0485370 | AT3G45660.3 | 32.778 | 180 | 115 | 3 | 3 | 182 | 106 | 279 | 7.16e-26 | 103 |
Msa0485370 | AT1G69870.1 | 34.146 | 164 | 104 | 2 | 3 | 164 | 136 | 297 | 2.08e-25 | 102 |
Msa0485370 | AT1G52190.1 | 32.515 | 163 | 108 | 2 | 3 | 163 | 106 | 268 | 9.64e-25 | 100 |
Msa0485370 | AT5G62680.1 | 31.414 | 191 | 127 | 2 | 3 | 192 | 128 | 315 | 9.93e-25 | 100 |
Msa0485370 | AT3G25260.1 | 35.065 | 154 | 89 | 2 | 3 | 156 | 106 | 248 | 1.34e-24 | 100 |
Msa0485370 | AT1G72125.1 | 34.810 | 158 | 91 | 3 | 3 | 156 | 114 | 263 | 2.73e-23 | 96.7 |
Msa0485370 | AT1G72140.1 | 35.263 | 190 | 106 | 4 | 1 | 182 | 117 | 297 | 4.19e-23 | 96.3 |
Msa0485370 | AT1G72120.1 | 33.333 | 147 | 90 | 2 | 39 | 181 | 142 | 284 | 1.71e-22 | 94.4 |
Msa0485370 | AT3G47960.1 | 32.292 | 192 | 122 | 5 | 3 | 192 | 146 | 331 | 2.23e-22 | 94.4 |
Msa0485370 | AT1G22570.2 | 32.867 | 143 | 90 | 1 | 39 | 175 | 111 | 253 | 5.37e-22 | 93.2 |
Msa0485370 | AT5G62730.2 | 39.130 | 115 | 70 | 0 | 40 | 154 | 103 | 217 | 6.67e-22 | 92.8 |
Msa0485370 | AT1G22570.1 | 32.867 | 143 | 90 | 1 | 39 | 175 | 148 | 290 | 6.69e-22 | 92.8 |
Msa0485370 | AT5G62730.1 | 39.130 | 115 | 70 | 0 | 40 | 154 | 162 | 276 | 7.77e-22 | 92.8 |
Msa0485370 | AT1G22550.1 | 36.066 | 122 | 74 | 1 | 39 | 156 | 151 | 272 | 8.67e-22 | 92.4 |
Msa0485370 | AT3G25280.1 | 34.416 | 154 | 90 | 2 | 3 | 156 | 106 | 248 | 8.68e-22 | 92.4 |
Msa0485370 | AT1G27080.2 | 33.714 | 175 | 108 | 4 | 1 | 170 | 55 | 226 | 1.07e-21 | 92.0 |
Msa0485370 | AT1G27080.1 | 33.714 | 175 | 108 | 4 | 1 | 170 | 97 | 268 | 1.28e-21 | 92.0 |
Msa0485370 | AT1G69860.1 | 32.903 | 155 | 103 | 1 | 3 | 156 | 103 | 257 | 2.09e-21 | 91.3 |
Msa0485370 | AT1G72130.1 | 35.849 | 159 | 88 | 3 | 1 | 156 | 108 | 255 | 2.72e-21 | 90.9 |
Msa0485370 | AT1G72130.2 | 37.121 | 132 | 80 | 1 | 28 | 156 | 6 | 137 | 2.36e-20 | 87.8 |
Msa0485370 | AT1G72130.3 | 37.121 | 132 | 80 | 1 | 28 | 156 | 6 | 137 | 2.36e-20 | 87.8 |
Msa0485370 | AT5G14940.1 | 28.931 | 159 | 96 | 4 | 34 | 175 | 110 | 268 | 1.11e-14 | 72.0 |
Msa0485370 | AT3G01350.1 | 29.747 | 158 | 89 | 6 | 40 | 175 | 116 | 273 | 2.97e-12 | 65.1 |
Find 46 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATCTTGAACTTCCCTTTAT+TGG | 0.093290 | 3_4:-3017955 | None:intergenic |
CTAAGCTCATATAGTTCTTT+TGG | 0.186385 | 3_4:-3017918 | None:intergenic |
GACCTTAACCATTCTATTAA+TGG | 0.209430 | 3_4:-3017850 | None:intergenic |
AGCTTAAGTCCCTTCTGTTT+AGG | 0.259719 | 3_4:-3017636 | None:intergenic |
GCTTAAGTCCCTTCTGTTTA+GGG | 0.263384 | 3_4:-3017635 | None:intergenic |
GGTTATGCTCTTCAAACTAC+TGG | 0.271325 | 3_4:+3017756 | Msa0485370:CDS |
TTGGAAGAGTATACCAATAA+AGG | 0.279634 | 3_4:+3017942 | Msa0485370:CDS |
AATATCAATCATCACATTCT+TGG | 0.288996 | 3_4:+3017785 | Msa0485370:CDS |
TTGATTCCACTCCAACATTC+AGG | 0.311811 | 3_4:+3017976 | Msa0485370:CDS |
CATGGCACTCAGGTGGCTTT+AGG | 0.329178 | 3_4:-3017470 | None:intergenic |
AGAACTATATGAGCTTAGTT+TGG | 0.332943 | 3_4:+3017923 | Msa0485370:CDS |
ACCTTAACCATTCTATTAAT+GGG | 0.343348 | 3_4:-3017849 | None:intergenic |
TTAAGCTCTCATTCTTCAAT+TGG | 0.369855 | 3_4:+3017652 | Msa0485370:CDS |
AGGTCTTTGTGGCAGCTATA+AGG | 0.381475 | 3_4:+3017868 | Msa0485370:CDS |
TTGTGGCAGCTATAAGGAAA+TGG | 0.394237 | 3_4:+3017874 | Msa0485370:CDS |
TCCCATTAATAGAATGGTTA+AGG | 0.420728 | 3_4:+3017848 | Msa0485370:CDS |
CACTCAGGTGGCTTTAGGCT+TGG | 0.427219 | 3_4:-3017465 | None:intergenic |
TATAGACACAAATTGCTCTC+AGG | 0.430110 | 3_4:+3017822 | Msa0485370:CDS |
TGTGGCAGCTATAAGGAAAT+GGG | 0.434197 | 3_4:+3017875 | Msa0485370:CDS |
AGCTCTCATTCTTCAATTGG+TGG | 0.436775 | 3_4:+3017655 | Msa0485370:CDS |
TAGGGTCAAAATCATCAAAC+TGG | 0.442660 | 3_4:-3017617 | None:intergenic |
TACATTATAGCAGTGGGAAC+AGG | 0.446451 | 3_4:+3017558 | Msa0485370:CDS |
GCACCAATGGTGGAAATGTT+GGG | 0.453768 | 3_4:-3017591 | None:intergenic |
TAGAATGGTTAAGGTCTTTG+TGG | 0.458228 | 3_4:+3017857 | Msa0485370:CDS |
AGCACCAATGGTGGAAATGT+TGG | 0.460196 | 3_4:-3017592 | None:intergenic |
GCCACCTGAGTGCCATGAAA+TGG | 0.462479 | 3_4:+3017476 | Msa0485370:CDS |
TGGAAGAGTATACCAATAAA+GGG | 0.463267 | 3_4:+3017943 | Msa0485370:CDS |
AATGGTGGAAATGTTGGGTT+TGG | 0.467028 | 3_4:-3017586 | None:intergenic |
AAACCCAACATTTCCACCAT+TGG | 0.488482 | 3_4:+3017588 | Msa0485370:CDS |
GTTATGCTCTTCAAACTACT+GGG | 0.509822 | 3_4:+3017757 | Msa0485370:CDS |
AGCAATTTGTGTCTATAGAA+AGG | 0.512454 | 3_4:-3017816 | None:intergenic |
AGGGAGTCCCATTAATAGAA+TGG | 0.517004 | 3_4:+3017842 | Msa0485370:CDS |
GATAATGTGAGTTGGACTCT+TGG | 0.517196 | 3_4:+3017735 | Msa0485370:CDS |
ATCAAACTGGTCAGCACCAA+TGG | 0.521017 | 3_4:-3017604 | None:intergenic |
TCAATCATCACATTCTTGGC+AGG | 0.532239 | 3_4:+3017789 | Msa0485370:CDS |
ATAGACACAAATTGCTCTCA+GGG | 0.558835 | 3_4:+3017823 | Msa0485370:CDS |
ACATCCATTTCATGGCACTC+AGG | 0.580049 | 3_4:-3017480 | None:intergenic |
TAGAACTTATACCTGAATGT+TGG | 0.584571 | 3_4:-3017987 | None:intergenic |
TCCATTTCATGGCACTCAGG+TGG | 0.585077 | 3_4:-3017477 | None:intergenic |
ATTATAGCAGTGGGAACAGG+TGG | 0.594427 | 3_4:+3017561 | Msa0485370:CDS |
TGCACTCTACATTATAGCAG+TGG | 0.606767 | 3_4:+3017551 | Msa0485370:CDS |
AAACTGGTCAGCACCAATGG+TGG | 0.606901 | 3_4:-3017601 | None:intergenic |
CTTATACCTGAATGTTGGAG+TGG | 0.608062 | 3_4:-3017982 | None:intergenic |
GCACTCTACATTATAGCAGT+GGG | 0.612549 | 3_4:+3017552 | Msa0485370:CDS |
ATATACAAGATAATGTGAGT+TGG | 0.624510 | 3_4:+3017727 | Msa0485370:CDS |
GTGGCAGCTATAAGGAAATG+GGG | 0.670574 | 3_4:+3017876 | Msa0485370:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATGTTTTCTTTATACATT+TGG | + | chr3_4:3016983-3017002 | Msa0485370:intron | 15.0% |
!! | TAATAATAATAATACAACAG+AGG | - | chr3_4:3017158-3017177 | None:intergenic | 15.0% |
!! | ACTACTACTTATATATTTAT+TGG | + | chr3_4:3017231-3017250 | Msa0485370:intron | 15.0% |
!! | CATATAATAATGTAAATGAA+AGG | - | chr3_4:3017295-3017314 | None:intergenic | 15.0% |
!!! | AAATGTTTTCTTTATACATT+TGG | + | chr3_4:3016983-3017002 | Msa0485370:intron | 15.0% |
!! | TAATAATAATAATACAACAG+AGG | - | chr3_4:3017158-3017177 | None:intergenic | 15.0% |
!! | ACTACTACTTATATATTTAT+TGG | + | chr3_4:3017231-3017250 | Msa0485370:intron | 15.0% |
!! | CATATAATAATGTAAATGAA+AGG | - | chr3_4:3017295-3017314 | None:intergenic | 15.0% |
!!! | ATTCTTAATCTCTCTTTTTT+TGG | + | chr3_4:3016958-3016977 | Msa0485370:intron | 20.0% |
!!! | ATTAAAGTATGTGTGTTATT+CGG | + | chr3_4:3017040-3017059 | Msa0485370:intron | 20.0% |
!! | GCATACCAATAAATATATAA+GGG | - | chr3_4:3017273-3017292 | None:intergenic | 20.0% |
!!! | ATTCTTAATCTCTCTTTTTT+TGG | + | chr3_4:3016958-3016977 | Msa0485370:intron | 20.0% |
!!! | ATTAAAGTATGTGTGTTATT+CGG | + | chr3_4:3017040-3017059 | Msa0485370:intron | 20.0% |
!! | GCATACCAATAAATATATAA+GGG | - | chr3_4:3017273-3017292 | None:intergenic | 20.0% |
! | ATTAAGAATGCATTATTGGT+TGG | - | chr3_4:3016947-3016966 | None:intergenic | 25.0% |
! | AGAGATTAAGAATGCATTAT+TGG | - | chr3_4:3016951-3016970 | None:intergenic | 25.0% |
! | TAATAATAATACAACAGAGG+TGG | - | chr3_4:3017155-3017174 | None:intergenic | 25.0% |
! | TACCAATAAATATATAAGGG+AGG | - | chr3_4:3017270-3017289 | None:intergenic | 25.0% |
! | GGCATACCAATAAATATATA+AGG | - | chr3_4:3017274-3017293 | None:intergenic | 25.0% |
!! | TGTTCATAATTCATGAGTTT+TGG | + | chr3_4:3017399-3017418 | Msa0485370:intron | 25.0% |
! | ATATACAAGATAATGTGAGT+TGG | + | chr3_4:3017727-3017746 | Msa0485370:CDS | 25.0% |
! | AATATCAATCATCACATTCT+TGG | + | chr3_4:3017785-3017804 | Msa0485370:CDS | 25.0% |
! | ACCTTAACCATTCTATTAAT+GGG | - | chr3_4:3017852-3017871 | None:intergenic | 25.0% |
!! | TAAGCTCATATAGTTCTTTT+GGG | - | chr3_4:3017920-3017939 | None:intergenic | 25.0% |
! | ATTAAGAATGCATTATTGGT+TGG | - | chr3_4:3016947-3016966 | None:intergenic | 25.0% |
! | AGAGATTAAGAATGCATTAT+TGG | - | chr3_4:3016951-3016970 | None:intergenic | 25.0% |
! | TAATAATAATACAACAGAGG+TGG | - | chr3_4:3017155-3017174 | None:intergenic | 25.0% |
! | TACCAATAAATATATAAGGG+AGG | - | chr3_4:3017270-3017289 | None:intergenic | 25.0% |
! | GGCATACCAATAAATATATA+AGG | - | chr3_4:3017274-3017293 | None:intergenic | 25.0% |
!! | TGTTCATAATTCATGAGTTT+TGG | + | chr3_4:3017399-3017418 | Msa0485370:intron | 25.0% |
! | ATATACAAGATAATGTGAGT+TGG | + | chr3_4:3017727-3017746 | Msa0485370:CDS | 25.0% |
! | AATATCAATCATCACATTCT+TGG | + | chr3_4:3017785-3017804 | Msa0485370:CDS | 25.0% |
! | ACCTTAACCATTCTATTAAT+GGG | - | chr3_4:3017852-3017871 | None:intergenic | 25.0% |
!! | TAAGCTCATATAGTTCTTTT+GGG | - | chr3_4:3017920-3017939 | None:intergenic | 25.0% |
TGCCTCCCTTATATATTTAT+TGG | + | chr3_4:3017265-3017284 | Msa0485370:intron | 30.0% | |
! | TGGTATTTCTCTGATTCTTT+TGG | + | chr3_4:3017374-3017393 | Msa0485370:intron | 30.0% |
! | GGTATTTCTCTGATTCTTTT+GGG | + | chr3_4:3017375-3017394 | Msa0485370:intron | 30.0% |
!! | AATTCATGAGTTTTGGTGAA+TGG | + | chr3_4:3017406-3017425 | Msa0485370:intron | 30.0% |
! | ATTTTGTCACATCCATTTCA+TGG | - | chr3_4:3017491-3017510 | None:intergenic | 30.0% |
TTAAGCTCTCATTCTTCAAT+TGG | + | chr3_4:3017652-3017671 | Msa0485370:CDS | 30.0% | |
AGCAATTTGTGTCTATAGAA+AGG | - | chr3_4:3017819-3017838 | None:intergenic | 30.0% | |
TCCCATTAATAGAATGGTTA+AGG | + | chr3_4:3017848-3017867 | Msa0485370:CDS | 30.0% | |
GACCTTAACCATTCTATTAA+TGG | - | chr3_4:3017853-3017872 | None:intergenic | 30.0% | |
! | CTAAGCTCATATAGTTCTTT+TGG | - | chr3_4:3017921-3017940 | None:intergenic | 30.0% |
AGAACTATATGAGCTTAGTT+TGG | + | chr3_4:3017923-3017942 | Msa0485370:CDS | 30.0% | |
! | TTGGAAGAGTATACCAATAA+AGG | + | chr3_4:3017942-3017961 | Msa0485370:CDS | 30.0% |
! | TGGAAGAGTATACCAATAAA+GGG | + | chr3_4:3017943-3017962 | Msa0485370:CDS | 30.0% |
AATCTTGAACTTCCCTTTAT+TGG | - | chr3_4:3017958-3017977 | None:intergenic | 30.0% | |
TAGAACTTATACCTGAATGT+TGG | - | chr3_4:3017990-3018009 | None:intergenic | 30.0% | |
TGCCTCCCTTATATATTTAT+TGG | + | chr3_4:3017265-3017284 | Msa0485370:intron | 30.0% | |
! | TGGTATTTCTCTGATTCTTT+TGG | + | chr3_4:3017374-3017393 | Msa0485370:intron | 30.0% |
! | GGTATTTCTCTGATTCTTTT+GGG | + | chr3_4:3017375-3017394 | Msa0485370:intron | 30.0% |
!! | AATTCATGAGTTTTGGTGAA+TGG | + | chr3_4:3017406-3017425 | Msa0485370:intron | 30.0% |
! | ATTTTGTCACATCCATTTCA+TGG | - | chr3_4:3017491-3017510 | None:intergenic | 30.0% |
TTAAGCTCTCATTCTTCAAT+TGG | + | chr3_4:3017652-3017671 | Msa0485370:CDS | 30.0% | |
AGCAATTTGTGTCTATAGAA+AGG | - | chr3_4:3017819-3017838 | None:intergenic | 30.0% | |
TCCCATTAATAGAATGGTTA+AGG | + | chr3_4:3017848-3017867 | Msa0485370:CDS | 30.0% | |
GACCTTAACCATTCTATTAA+TGG | - | chr3_4:3017853-3017872 | None:intergenic | 30.0% | |
! | CTAAGCTCATATAGTTCTTT+TGG | - | chr3_4:3017921-3017940 | None:intergenic | 30.0% |
AGAACTATATGAGCTTAGTT+TGG | + | chr3_4:3017923-3017942 | Msa0485370:CDS | 30.0% | |
! | TTGGAAGAGTATACCAATAA+AGG | + | chr3_4:3017942-3017961 | Msa0485370:CDS | 30.0% |
! | TGGAAGAGTATACCAATAAA+GGG | + | chr3_4:3017943-3017962 | Msa0485370:CDS | 30.0% |
AATCTTGAACTTCCCTTTAT+TGG | - | chr3_4:3017958-3017977 | None:intergenic | 30.0% | |
TAGAACTTATACCTGAATGT+TGG | - | chr3_4:3017990-3018009 | None:intergenic | 30.0% | |
TAATAATACAACAGAGGTGG+TGG | - | chr3_4:3017152-3017171 | None:intergenic | 35.0% | |
AGAAATACCAACAAGTAGCA+AGG | - | chr3_4:3017364-3017383 | None:intergenic | 35.0% | |
TAGGGTCAAAATCATCAAAC+TGG | - | chr3_4:3017620-3017639 | None:intergenic | 35.0% | |
!! | TGATTTTGACCCTAAACAGA+AGG | + | chr3_4:3017626-3017645 | Msa0485370:CDS | 35.0% |
!! | GATTTTGACCCTAAACAGAA+GGG | + | chr3_4:3017627-3017646 | Msa0485370:CDS | 35.0% |
GTTATGCTCTTCAAACTACT+GGG | + | chr3_4:3017757-3017776 | Msa0485370:CDS | 35.0% | |
TATAGACACAAATTGCTCTC+AGG | + | chr3_4:3017822-3017841 | Msa0485370:CDS | 35.0% | |
ATAGACACAAATTGCTCTCA+GGG | + | chr3_4:3017823-3017842 | Msa0485370:CDS | 35.0% | |
TAGAATGGTTAAGGTCTTTG+TGG | + | chr3_4:3017857-3017876 | Msa0485370:CDS | 35.0% | |
!! | TATAGTTCTTTTGGGTCTTC+AGG | - | chr3_4:3017912-3017931 | None:intergenic | 35.0% |
TAATAATACAACAGAGGTGG+TGG | - | chr3_4:3017152-3017171 | None:intergenic | 35.0% | |
AGAAATACCAACAAGTAGCA+AGG | - | chr3_4:3017364-3017383 | None:intergenic | 35.0% | |
TAGGGTCAAAATCATCAAAC+TGG | - | chr3_4:3017620-3017639 | None:intergenic | 35.0% | |
!! | TGATTTTGACCCTAAACAGA+AGG | + | chr3_4:3017626-3017645 | Msa0485370:CDS | 35.0% |
!! | GATTTTGACCCTAAACAGAA+GGG | + | chr3_4:3017627-3017646 | Msa0485370:CDS | 35.0% |
GTTATGCTCTTCAAACTACT+GGG | + | chr3_4:3017757-3017776 | Msa0485370:CDS | 35.0% | |
TATAGACACAAATTGCTCTC+AGG | + | chr3_4:3017822-3017841 | Msa0485370:CDS | 35.0% | |
ATAGACACAAATTGCTCTCA+GGG | + | chr3_4:3017823-3017842 | Msa0485370:CDS | 35.0% | |
TAGAATGGTTAAGGTCTTTG+TGG | + | chr3_4:3017857-3017876 | Msa0485370:CDS | 35.0% | |
!! | TATAGTTCTTTTGGGTCTTC+AGG | - | chr3_4:3017912-3017931 | None:intergenic | 35.0% |
TGAGAAACTCATGTAGTAGC+AGG | - | chr3_4:3017102-3017121 | None:intergenic | 40.0% | |
! | TATCAAGCCTTGCTACTTGT+TGG | + | chr3_4:3017354-3017373 | Msa0485370:intron | 40.0% |
!! | ATGAGTTTTGGTGAATGGCA+GGG | + | chr3_4:3017411-3017430 | Msa0485370:intron | 40.0% |
TGCACTCTACATTATAGCAG+TGG | + | chr3_4:3017551-3017570 | Msa0485370:CDS | 40.0% | |
GCACTCTACATTATAGCAGT+GGG | + | chr3_4:3017552-3017571 | Msa0485370:CDS | 40.0% | |
TACATTATAGCAGTGGGAAC+AGG | + | chr3_4:3017558-3017577 | Msa0485370:CDS | 40.0% | |
! | AATGGTGGAAATGTTGGGTT+TGG | - | chr3_4:3017589-3017608 | None:intergenic | 40.0% |
AAACCCAACATTTCCACCAT+TGG | + | chr3_4:3017588-3017607 | Msa0485370:CDS | 40.0% | |
GCTTAAGTCCCTTCTGTTTA+GGG | - | chr3_4:3017638-3017657 | None:intergenic | 40.0% | |
AGCTTAAGTCCCTTCTGTTT+AGG | - | chr3_4:3017639-3017658 | None:intergenic | 40.0% | |
AGCTCTCATTCTTCAATTGG+TGG | + | chr3_4:3017655-3017674 | Msa0485370:CDS | 40.0% | |
! | TGGATGTCCTGCATTGTTTT+TGG | + | chr3_4:3017675-3017694 | Msa0485370:CDS | 40.0% |
!! | GGATGTCCTGCATTGTTTTT+GGG | + | chr3_4:3017676-3017695 | Msa0485370:CDS | 40.0% |
TAGTGACCCAAAAACAATGC+AGG | - | chr3_4:3017685-3017704 | None:intergenic | 40.0% | |
! | GATAATGTGAGTTGGACTCT+TGG | + | chr3_4:3017735-3017754 | Msa0485370:CDS | 40.0% |
GGTTATGCTCTTCAAACTAC+TGG | + | chr3_4:3017756-3017775 | Msa0485370:CDS | 40.0% | |
TCAATCATCACATTCTTGGC+AGG | + | chr3_4:3017789-3017808 | Msa0485370:CDS | 40.0% | |
AGGGAGTCCCATTAATAGAA+TGG | + | chr3_4:3017842-3017861 | Msa0485370:CDS | 40.0% | |
TTGTGGCAGCTATAAGGAAA+TGG | + | chr3_4:3017874-3017893 | Msa0485370:CDS | 40.0% | |
TGTGGCAGCTATAAGGAAAT+GGG | + | chr3_4:3017875-3017894 | Msa0485370:CDS | 40.0% | |
TTGATTCCACTCCAACATTC+AGG | + | chr3_4:3017976-3017995 | Msa0485370:CDS | 40.0% | |
CTTATACCTGAATGTTGGAG+TGG | - | chr3_4:3017985-3018004 | None:intergenic | 40.0% | |
TGAGAAACTCATGTAGTAGC+AGG | - | chr3_4:3017102-3017121 | None:intergenic | 40.0% | |
! | TATCAAGCCTTGCTACTTGT+TGG | + | chr3_4:3017354-3017373 | Msa0485370:intron | 40.0% |
!! | ATGAGTTTTGGTGAATGGCA+GGG | + | chr3_4:3017411-3017430 | Msa0485370:intron | 40.0% |
TGCACTCTACATTATAGCAG+TGG | + | chr3_4:3017551-3017570 | Msa0485370:CDS | 40.0% | |
GCACTCTACATTATAGCAGT+GGG | + | chr3_4:3017552-3017571 | Msa0485370:CDS | 40.0% | |
TACATTATAGCAGTGGGAAC+AGG | + | chr3_4:3017558-3017577 | Msa0485370:CDS | 40.0% | |
! | AATGGTGGAAATGTTGGGTT+TGG | - | chr3_4:3017589-3017608 | None:intergenic | 40.0% |
AAACCCAACATTTCCACCAT+TGG | + | chr3_4:3017588-3017607 | Msa0485370:CDS | 40.0% | |
GCTTAAGTCCCTTCTGTTTA+GGG | - | chr3_4:3017638-3017657 | None:intergenic | 40.0% | |
AGCTTAAGTCCCTTCTGTTT+AGG | - | chr3_4:3017639-3017658 | None:intergenic | 40.0% | |
AGCTCTCATTCTTCAATTGG+TGG | + | chr3_4:3017655-3017674 | Msa0485370:CDS | 40.0% | |
! | TGGATGTCCTGCATTGTTTT+TGG | + | chr3_4:3017675-3017694 | Msa0485370:CDS | 40.0% |
!! | GGATGTCCTGCATTGTTTTT+GGG | + | chr3_4:3017676-3017695 | Msa0485370:CDS | 40.0% |
TAGTGACCCAAAAACAATGC+AGG | - | chr3_4:3017685-3017704 | None:intergenic | 40.0% | |
! | GATAATGTGAGTTGGACTCT+TGG | + | chr3_4:3017735-3017754 | Msa0485370:CDS | 40.0% |
GGTTATGCTCTTCAAACTAC+TGG | + | chr3_4:3017756-3017775 | Msa0485370:CDS | 40.0% | |
TCAATCATCACATTCTTGGC+AGG | + | chr3_4:3017789-3017808 | Msa0485370:CDS | 40.0% | |
AGGGAGTCCCATTAATAGAA+TGG | + | chr3_4:3017842-3017861 | Msa0485370:CDS | 40.0% | |
TTGTGGCAGCTATAAGGAAA+TGG | + | chr3_4:3017874-3017893 | Msa0485370:CDS | 40.0% | |
TGTGGCAGCTATAAGGAAAT+GGG | + | chr3_4:3017875-3017894 | Msa0485370:CDS | 40.0% | |
TTGATTCCACTCCAACATTC+AGG | + | chr3_4:3017976-3017995 | Msa0485370:CDS | 40.0% | |
CTTATACCTGAATGTTGGAG+TGG | - | chr3_4:3017985-3018004 | None:intergenic | 40.0% | |
! | TAATACAACAGAGGTGGTGG+TGG | - | chr3_4:3017149-3017168 | None:intergenic | 45.0% |
!! | CATGAGTTTTGGTGAATGGC+AGG | + | chr3_4:3017410-3017429 | Msa0485370:intron | 45.0% |
ACATCCATTTCATGGCACTC+AGG | - | chr3_4:3017483-3017502 | None:intergenic | 45.0% | |
ATTATAGCAGTGGGAACAGG+TGG | + | chr3_4:3017561-3017580 | Msa0485370:CDS | 45.0% | |
! | GCACCAATGGTGGAAATGTT+GGG | - | chr3_4:3017594-3017613 | None:intergenic | 45.0% |
! | AGCACCAATGGTGGAAATGT+TGG | - | chr3_4:3017595-3017614 | None:intergenic | 45.0% |
ATCAAACTGGTCAGCACCAA+TGG | - | chr3_4:3017607-3017626 | None:intergenic | 45.0% | |
AGGTCTTTGTGGCAGCTATA+AGG | + | chr3_4:3017868-3017887 | Msa0485370:CDS | 45.0% | |
GTGGCAGCTATAAGGAAATG+GGG | + | chr3_4:3017876-3017895 | Msa0485370:CDS | 45.0% | |
! | TAATACAACAGAGGTGGTGG+TGG | - | chr3_4:3017149-3017168 | None:intergenic | 45.0% |
!! | CATGAGTTTTGGTGAATGGC+AGG | + | chr3_4:3017410-3017429 | Msa0485370:intron | 45.0% |
ACATCCATTTCATGGCACTC+AGG | - | chr3_4:3017483-3017502 | None:intergenic | 45.0% | |
ATTATAGCAGTGGGAACAGG+TGG | + | chr3_4:3017561-3017580 | Msa0485370:CDS | 45.0% | |
! | GCACCAATGGTGGAAATGTT+GGG | - | chr3_4:3017594-3017613 | None:intergenic | 45.0% |
! | AGCACCAATGGTGGAAATGT+TGG | - | chr3_4:3017595-3017614 | None:intergenic | 45.0% |
ATCAAACTGGTCAGCACCAA+TGG | - | chr3_4:3017607-3017626 | None:intergenic | 45.0% | |
AGGTCTTTGTGGCAGCTATA+AGG | + | chr3_4:3017868-3017887 | Msa0485370:CDS | 45.0% | |
GTGGCAGCTATAAGGAAATG+GGG | + | chr3_4:3017876-3017895 | Msa0485370:CDS | 45.0% | |
GTAGTAGCAGGACAGACACA+GGG | - | chr3_4:3017090-3017109 | None:intergenic | 50.0% | |
TGTAGTAGCAGGACAGACAC+AGG | - | chr3_4:3017091-3017110 | None:intergenic | 50.0% | |
TGGAGGAGGAGATGTTGATG+TGG | - | chr3_4:3017129-3017148 | None:intergenic | 50.0% | |
TCCATTTCATGGCACTCAGG+TGG | - | chr3_4:3017480-3017499 | None:intergenic | 50.0% | |
AAACTGGTCAGCACCAATGG+TGG | - | chr3_4:3017604-3017623 | None:intergenic | 50.0% | |
GTAGTAGCAGGACAGACACA+GGG | - | chr3_4:3017090-3017109 | None:intergenic | 50.0% | |
TGTAGTAGCAGGACAGACAC+AGG | - | chr3_4:3017091-3017110 | None:intergenic | 50.0% | |
TGGAGGAGGAGATGTTGATG+TGG | - | chr3_4:3017129-3017148 | None:intergenic | 50.0% | |
TCCATTTCATGGCACTCAGG+TGG | - | chr3_4:3017480-3017499 | None:intergenic | 50.0% | |
AAACTGGTCAGCACCAATGG+TGG | - | chr3_4:3017604-3017623 | None:intergenic | 50.0% | |
TAGCAGGACAGACACAGGGA+CGG | - | chr3_4:3017086-3017105 | None:intergenic | 55.0% | |
!! | TACAACAGAGGTGGTGGTGG+AGG | - | chr3_4:3017146-3017165 | None:intergenic | 55.0% |
!! | CACTCAGGTGGCTTTAGGCT+TGG | - | chr3_4:3017468-3017487 | None:intergenic | 55.0% |
CATGGCACTCAGGTGGCTTT+AGG | - | chr3_4:3017473-3017492 | None:intergenic | 55.0% | |
GCCACCTGAGTGCCATGAAA+TGG | + | chr3_4:3017476-3017495 | Msa0485370:CDS | 55.0% | |
TAGCAGGACAGACACAGGGA+CGG | - | chr3_4:3017086-3017105 | None:intergenic | 55.0% | |
!! | TACAACAGAGGTGGTGGTGG+AGG | - | chr3_4:3017146-3017165 | None:intergenic | 55.0% |
!! | CACTCAGGTGGCTTTAGGCT+TGG | - | chr3_4:3017468-3017487 | None:intergenic | 55.0% |
CATGGCACTCAGGTGGCTTT+AGG | - | chr3_4:3017473-3017492 | None:intergenic | 55.0% | |
GCCACCTGAGTGCCATGAAA+TGG | + | chr3_4:3017476-3017495 | Msa0485370:CDS | 55.0% | |
AGCAGGACAGACACAGGGAC+GGG | - | chr3_4:3017085-3017104 | None:intergenic | 60.0% | |
!! | AACAGAGGTGGTGGTGGAGG+AGG | - | chr3_4:3017143-3017162 | None:intergenic | 60.0% |
AGCAGGACAGACACAGGGAC+GGG | - | chr3_4:3017085-3017104 | None:intergenic | 60.0% | |
!! | AACAGAGGTGGTGGTGGAGG+AGG | - | chr3_4:3017143-3017162 | None:intergenic | 60.0% |
AGGACAGACACAGGGACGGG+CGG | - | chr3_4:3017082-3017101 | None:intergenic | 65.0% | |
AGGACAGACACAGGGACGGG+CGG | - | chr3_4:3017082-3017101 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 3016846 | 3018010 | 3016846 | ID=Msa0485370;Name=Msa0485370 |
chr3_4 | mRNA | 3016846 | 3018010 | 3016846 | ID=Msa0485370-mRNA-1;Parent=Msa0485370;Name=Msa0485370-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|0.5|0|0.5|2|0|194 |
chr3_4 | exon | 3016846 | 3016851 | 3016846 | ID=Msa0485370-mRNA-1:exon:1046;Parent=Msa0485370-mRNA-1 |
chr3_4 | exon | 3017432 | 3018010 | 3017432 | ID=Msa0485370-mRNA-1:exon:1047;Parent=Msa0485370-mRNA-1 |
chr3_4 | CDS | 3016846 | 3016851 | 3016846 | ID=Msa0485370-mRNA-1:cds;Parent=Msa0485370-mRNA-1 |
chr3_4 | CDS | 3017432 | 3018010 | 3017432 | ID=Msa0485370-mRNA-1:cds;Parent=Msa0485370-mRNA-1 |
Gene Sequence |
Protein sequence |