Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0741990 | XP_013467905.1 | 77.778 | 315 | 25 | 2 | 2 | 273 | 556 | 868 | 1.57e-158 | 474 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0741990 | sp|P93422|SYHC_ORYSJ | 55.063 | 316 | 93 | 5 | 2 | 273 | 478 | 788 | 4.26e-105 | 326 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0741990 | A0A072VJI1 | 77.778 | 315 | 25 | 2 | 2 | 273 | 556 | 868 | 7.49e-159 | 474 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015750 | Msa0741990 | 0.834899 | 2.295047e-56 | -8.615850e-47 |
| Msa0016570 | Msa0741990 | 0.864223 | 1.419234e-64 | -8.615850e-47 |
| Msa0016580 | Msa0741990 | 0.855310 | 6.875292e-62 | -8.615850e-47 |
| Msa0102070 | Msa0741990 | 0.833296 | 5.786037e-56 | -8.615850e-47 |
| Msa0110270 | Msa0741990 | 0.853385 | 2.474276e-61 | -8.615850e-47 |
| Msa0111510 | Msa0741990 | 0.826732 | 2.308565e-54 | -8.615850e-47 |
| Msa0639610 | Msa0741990 | 0.810275 | 1.249995e-50 | -8.615850e-47 |
| Msa0668260 | Msa0741990 | 0.816466 | 5.451116e-52 | -8.615850e-47 |
| Msa0678930 | Msa0741990 | 0.872287 | 3.570511e-67 | -8.615850e-47 |
| Msa0694370 | Msa0741990 | 0.816744 | 4.723165e-52 | -8.615850e-47 |
| Msa0726140 | Msa0741990 | 0.856657 | 2.774507e-62 | -8.615850e-47 |
| Msa0729800 | Msa0741990 | 0.813727 | 2.210937e-51 | -8.615850e-47 |
| Msa0733290 | Msa0741990 | 0.820863 | 5.477053e-53 | -8.615850e-47 |
| Msa0741990 | Msa0743810 | 0.834473 | 2.937171e-56 | -8.615850e-47 |
| Msa0741990 | Msa0745060 | 0.854272 | 1.374849e-61 | -8.615850e-47 |
| Msa0741990 | Msa0764960 | 0.801575 | 8.440468e-49 | -8.615850e-47 |
| Msa0741990 | Msa0766630 | 0.806204 | 9.216665e-50 | -8.615850e-47 |
| Msa0741990 | Msa0767720 | 0.819984 | 8.715820e-53 | -8.615850e-47 |
| Msa0741990 | Msa0783160 | 0.834089 | 3.666518e-56 | -8.615850e-47 |
| Msa0741990 | Msa0787600 | 0.818696 | 1.712756e-52 | -8.615850e-47 |
| Msa0741990 | Msa0789250 | 0.815963 | 7.059909e-52 | -8.615850e-47 |
| Msa0741990 | Msa0808010 | 0.813634 | 2.317237e-51 | -8.615850e-47 |
| Msa0741990 | Msa0808020 | 0.809975 | 1.450284e-50 | -8.615850e-47 |
| Msa0741990 | Msa0811080 | 0.844444 | 7.533160e-59 | -8.615850e-47 |
| Msa0741990 | Msa0825860 | 0.850151 | 2.044312e-60 | -8.615850e-47 |
| Msa0741990 | Msa0846330 | 0.808772 | 2.627919e-50 | -8.615850e-47 |
| Msa0741990 | Msa0846350 | 0.832822 | 7.588893e-56 | -8.615850e-47 |
| Msa0741990 | Msa0865320 | 0.829267 | 5.663491e-55 | -8.615850e-47 |
| Msa0741990 | Msa0884150 | 0.802792 | 4.742067e-49 | -8.615850e-47 |
| Msa0741990 | Msa0885280 | 0.811068 | 8.422099e-51 | -8.615850e-47 |
| Msa0741990 | Msa0885290 | 0.844094 | 9.354512e-59 | -8.615850e-47 |
| Msa0741990 | Msa0896080 | 0.811014 | 8.651235e-51 | -8.615850e-47 |
| Msa0741990 | Msa0954910 | 0.812394 | 4.333306e-51 | -8.615850e-47 |
| Msa0741990 | Msa0969260 | 0.820825 | 5.590586e-53 | -8.615850e-47 |
| Msa0741990 | Msa0979410 | 0.800125 | 1.668843e-48 | -8.615850e-47 |
| Msa0741990 | Msa0981370 | 0.819683 | 1.021060e-52 | -8.615850e-47 |
| Msa0741990 | Msa0989060 | 0.815126 | 1.084545e-51 | -8.615850e-47 |
| Msa0741990 | Msa1016280 | 0.837312 | 5.597992e-57 | -8.615850e-47 |
| Msa0741990 | Msa1024240 | 0.830669 | 2.578383e-55 | -8.615850e-47 |
| Msa0741990 | Msa1025360 | 0.840493 | 8.411429e-58 | -8.615850e-47 |
| Msa0741990 | Msa1025370 | 0.830098 | 3.555945e-55 | -8.615850e-47 |
| Msa0741990 | Msa1037200 | 0.806878 | 6.641948e-50 | -8.615850e-47 |
| Msa0741990 | Msa1044830 | 0.835779 | 1.375380e-56 | -8.615850e-47 |
| Msa0741990 | Msa1044840 | 0.837960 | 3.818308e-57 | -8.615850e-47 |
| Msa0741990 | Msa1054790 | 0.803361 | 3.616627e-49 | -8.615850e-47 |
| Msa0741990 | Msa1077460 | 0.815889 | 7.334775e-52 | -8.615850e-47 |
| Msa0741990 | Msa1092990 | 0.841751 | 3.928695e-58 | -8.615850e-47 |
| Msa0741990 | Msa1096580 | 0.808416 | 3.130745e-50 | -8.615850e-47 |
| Msa0741990 | Msa1100980 | 0.829816 | 4.164363e-55 | -8.615850e-47 |
| Msa0741990 | Msa1109440 | 0.819522 | 1.111508e-52 | -8.615850e-47 |
| Msa0741990 | Msa1135220 | 0.811002 | 8.703175e-51 | -8.615850e-47 |
| Msa0741990 | Msa1135740 | 0.808621 | 2.830616e-50 | -8.615850e-47 |
| Msa0741990 | Msa1136090 | 0.827932 | 1.190158e-54 | -8.615850e-47 |
| Msa0741990 | Msa1146110 | 0.857653 | 1.409740e-62 | -8.615850e-47 |
| Msa0741990 | Msa1148020 | 0.800086 | 1.699440e-48 | -8.615850e-47 |
| Msa0741990 | Msa1150370 | 0.811849 | 5.697446e-51 | -8.615850e-47 |
| Msa0741990 | Msa1160670 | 0.816504 | 5.346354e-52 | -8.615850e-47 |
| Msa0741990 | Msa1160690 | 0.803818 | 2.907902e-49 | -8.615850e-47 |
| Msa0741990 | Msa1164120 | 0.807763 | 4.312007e-50 | -8.615850e-47 |
| Msa0741990 | Msa1187940 | 0.845197 | 4.717876e-59 | -8.615850e-47 |
| Msa0741990 | Msa1187950 | 0.855682 | 5.354572e-62 | -8.615850e-47 |
| Msa0741990 | Msa1192640 | 0.853055 | 3.077255e-61 | -8.615850e-47 |
| Msa0741990 | Msa1260100 | 0.809769 | 1.606193e-50 | -8.615850e-47 |
| Msa0741990 | Msa1269670 | 0.851337 | 9.476065e-61 | -8.615850e-47 |
| Msa0741990 | Msa1270230 | 0.843846 | 1.090082e-58 | -8.615850e-47 |
| Msa0741990 | Msa1270240 | 0.831497 | 1.614069e-55 | -8.615850e-47 |
| Msa0741990 | Msa1270270 | 0.825164 | 5.442486e-54 | -8.615850e-47 |
| Msa0741990 | Msa1283330 | 0.841080 | 5.900838e-58 | -8.615850e-47 |
| Msa0741990 | Msa1284680 | 0.808275 | 3.355742e-50 | -8.615850e-47 |
| Msa0741990 | Msa1285930 | 0.875717 | 2.472749e-68 | -8.615850e-47 |
| Msa0741990 | Msa1287800 | 0.837151 | 6.156810e-57 | -8.615850e-47 |
| Msa0741990 | Msa1287810 | 0.847616 | 1.032941e-59 | -8.615850e-47 |
| Msa0741990 | Msa1287820 | 0.810223 | 1.282782e-50 | -8.615850e-47 |
| Msa0741990 | Msa1289420 | 0.815774 | 7.782052e-52 | -8.615850e-47 |
| Msa0741990 | Msa1289430 | 0.829069 | 6.324504e-55 | -8.615850e-47 |
| Msa0741990 | Msa1297210 | 0.805778 | 1.132664e-49 | -8.615850e-47 |
| Msa0741990 | Msa1307890 | 0.804570 | 2.027573e-49 | -8.615850e-47 |
| Msa0741990 | Msa1320300 | 0.805111 | 1.563139e-49 | -8.615850e-47 |
| Msa0741990 | Msa1340590 | 0.808438 | 3.097790e-50 | -8.615850e-47 |
| Msa0741990 | Msa1382690 | 0.803146 | 4.005880e-49 | -8.615850e-47 |
| Msa0741990 | Msa1397580 | 0.803348 | 3.639701e-49 | -8.615850e-47 |
| Msa0741990 | Msa1404000 | 0.843152 | 1.670606e-58 | -8.615850e-47 |
| Msa0741990 | Msa1415310 | 0.808603 | 2.856444e-50 | -8.615850e-47 |
| Msa0741990 | Msa1422180 | 0.830157 | 3.439616e-55 | -8.615850e-47 |
| Msa0741990 | Msa1433120 | 0.846623 | 1.933585e-59 | -8.615850e-47 |
| Msa0741990 | Msa1438250 | 0.804763 | 1.847598e-49 | -8.615850e-47 |
| Msa0741990 | Msa1451570 | 0.852272 | 5.148264e-61 | -8.615850e-47 |
| Msa0131770 | Msa0741990 | 0.806602 | 7.595642e-50 | -8.615850e-47 |
| Msa0142220 | Msa0741990 | 0.847804 | 9.169236e-60 | -8.615850e-47 |
| Msa0153910 | Msa0741990 | 0.843294 | 1.530847e-58 | -8.615850e-47 |
| Msa0200000 | Msa0741990 | 0.806442 | 8.208213e-50 | -8.615850e-47 |
| Msa0227480 | Msa0741990 | 0.818937 | 1.510319e-52 | -8.615850e-47 |
| Msa0365500 | Msa0741990 | 0.806480 | 8.058558e-50 | -8.615850e-47 |
| Msa0371730 | Msa0741990 | 0.820428 | 6.895319e-53 | -8.615850e-47 |
| Msa0384800 | Msa0741990 | 0.825961 | 3.522364e-54 | -8.615850e-47 |
| Msa0406120 | Msa0741990 | 0.822678 | 2.083000e-53 | -8.615850e-47 |
| Msa0407750 | Msa0741990 | 0.818057 | 2.390710e-52 | -8.615850e-47 |
| Msa0414410 | Msa0741990 | 0.801337 | 9.441964e-49 | -8.615850e-47 |
| Msa0414420 | Msa0741990 | 0.840011 | 1.124318e-57 | -8.615850e-47 |
| Msa0436780 | Msa0741990 | 0.809084 | 2.253738e-50 | -8.615850e-47 |
| Msa0436800 | Msa0741990 | 0.819093 | 1.391721e-52 | -8.615850e-47 |
| Msa0444130 | Msa0741990 | 0.822736 | 2.019378e-53 | -8.615850e-47 |
| Msa0450000 | Msa0741990 | 0.814341 | 1.618502e-51 | -8.615850e-47 |
| Msa0452900 | Msa0741990 | 0.852893 | 3.423984e-61 | -8.615850e-47 |
| Msa0453120 | Msa0741990 | 0.836990 | 6.769192e-57 | -8.615850e-47 |
| Msa0267000 | Msa0741990 | 0.824622 | 7.305367e-54 | -8.615850e-47 |
| Msa0267010 | Msa0741990 | 0.830685 | 2.555324e-55 | -8.615850e-47 |
| Msa0270520 | Msa0741990 | 0.814410 | 1.562648e-51 | -8.615850e-47 |
| Msa0273100 | Msa0741990 | 0.821192 | 4.600939e-53 | -8.615850e-47 |
| Msa0304170 | Msa0741990 | 0.842021 | 3.333496e-58 | -8.615850e-47 |
| Msa0306460 | Msa0741990 | 0.833073 | 6.574593e-56 | -8.615850e-47 |
| Msa0342240 | Msa0741990 | 0.851944 | 6.378807e-61 | -8.615850e-47 |
| Msa0360510 | Msa0741990 | 0.832230 | 1.064285e-55 | -8.615850e-47 |
| Msa0485370 | Msa0741990 | 0.804167 | 2.459413e-49 | -8.615850e-47 |
| Msa0491590 | Msa0741990 | 0.822647 | 2.118566e-53 | -8.615850e-47 |
| Msa0506270 | Msa0741990 | 0.812379 | 4.367930e-51 | -8.615850e-47 |
| Msa0564890 | Msa0741990 | 0.840847 | 6.794253e-58 | -8.615850e-47 |
| Msa0589780 | Msa0741990 | 0.816898 | 4.361395e-52 | -8.615850e-47 |
| Msa0592680 | Msa0741990 | 0.815451 | 9.182779e-52 | -8.615850e-47 |
| Msa0600700 | Msa0741990 | 0.801638 | 8.193585e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0741990 | MtrunA17_Chr1g0177811 | 77.778 | 315 | 25 | 2 | 2 | 273 | 556 | 868 | 1.44e-162 | 474 |
| Msa0741990 | MtrunA17_Chr5g0443461 | 75.410 | 122 | 28 | 1 | 2 | 123 | 85 | 204 | 9.21e-52 | 169 |
| Msa0741990 | MtrunA17_Chr7g0264611 | 24.812 | 266 | 163 | 7 | 25 | 258 | 263 | 523 | 1.86e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0741990 | AT3G02760.2 | 53.185 | 314 | 98 | 5 | 4 | 271 | 573 | 883 | 2.41e-96 | 303 |
| Msa0741990 | AT3G02760.1 | 53.185 | 314 | 98 | 5 | 4 | 271 | 573 | 883 | 2.41e-96 | 303 |
| Msa0741990 | AT3G46100.1 | 25.461 | 271 | 163 | 7 | 21 | 258 | 218 | 482 | 6.74e-17 | 80.9 |
Find 82 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGTCCTAGTGAGCATATT+AGG | 0.192256 | 5_1:-61795005 | Msa0741990:CDS |
| AGCTACAAATCTAGCAAATA+TGG | 0.281370 | 5_1:+61796839 | None:intergenic |
| AATCGAAACAAGATCTAAAT+AGG | 0.287403 | 5_1:+61794703 | None:intergenic |
| TCCTTGACCAAATTCTTTCT+AGG | 0.288967 | 5_1:+61794768 | None:intergenic |
| AGAGGTCTTGATTATTATAC+TGG | 0.307339 | 5_1:-61795596 | Msa0741990:CDS |
| CGAGAGAGTATTTGCGATAA+TGG | 0.309456 | 5_1:-61795327 | Msa0741990:CDS |
| GTTAAATCATAGAAAGTTAC+TGG | 0.318905 | 5_1:-61796349 | Msa0741990:CDS |
| AAACATCCCTAGAAAGAATT+TGG | 0.334515 | 5_1:-61794775 | Msa0741990:CDS |
| CAATGTGACTTTGATATTGC+TGG | 0.336628 | 5_1:-61796725 | Msa0741990:five_prime_UTR |
| GAGCTTTAAATAAAATTTCC+AGG | 0.351718 | 5_1:+61795669 | None:intergenic |
| ATTCTAACAACCTCAAAATC+TGG | 0.356532 | 5_1:+61796682 | None:intergenic |
| TTGAACCAAACATCCCTATC+AGG | 0.368156 | 5_1:+61795384 | None:intergenic |
| GATTTATGATCTTGCTGATC+AGG | 0.370898 | 5_1:-61797024 | Msa0741990:intron |
| TTGAATTGCGAGAAACTCTA+TGG | 0.389595 | 5_1:-61797062 | Msa0741990:five_prime_UTR |
| GGTCGATATGATAACCTGAT+AGG | 0.391800 | 5_1:-61795398 | Msa0741990:CDS |
| GATCTTGTTTCGATTGGCTT+GGG | 0.395726 | 5_1:-61794695 | Msa0741990:CDS |
| TGCTTGATGAGCTCAACATT+GGG | 0.396393 | 5_1:-61796648 | Msa0741990:CDS |
| GTGGGGAGCTATGTTCTTTG+AGG | 0.396927 | 5_1:-61796877 | Msa0741990:five_prime_UTR |
| TGGGGTGAAAGCAGAGTTCT+TGG | 0.399585 | 5_1:-61794934 | Msa0741990:CDS |
| AGATCTTGTTTCGATTGGCT+TGG | 0.405660 | 5_1:-61794696 | Msa0741990:CDS |
| GTTGGTGAACTGTGGGATGA+TGG | 0.405860 | 5_1:-61794954 | Msa0741990:CDS |
| GCTAGATTTGTAGCTATGAA+TGG | 0.407948 | 5_1:-61796831 | Msa0741990:five_prime_UTR |
| TTGGTGAACTGTGGGATGAT+GGG | 0.423484 | 5_1:-61794953 | Msa0741990:CDS |
| GATAACCTGATAGGGATGTT+TGG | 0.424615 | 5_1:-61795389 | Msa0741990:CDS |
| AAGTCCTAGTGAGCATATTA+GGG | 0.434249 | 5_1:-61795004 | Msa0741990:CDS |
| GCAAATATGTGGAGCACCTC+AGG | 0.438842 | 5_1:-61796316 | Msa0741990:CDS |
| TATTTAGATCTTGTTTCGAT+TGG | 0.439674 | 5_1:-61794701 | Msa0741990:CDS |
| CACGGTATCTTCCTTTAGAC+GGG | 0.454920 | 5_1:+61796756 | None:intergenic |
| AAATAGGATGCTACAAATAC+CGG | 0.454966 | 5_1:+61794719 | None:intergenic |
| CCTTGACCAAATTCTTTCTA+GGG | 0.460132 | 5_1:+61794769 | None:intergenic |
| GATGATACTTGTTGGTGAAC+GGG | 0.462677 | 5_1:-61794856 | Msa0741990:CDS |
| GCTCACTAGGACTTCTGTCT+TGG | 0.464076 | 5_1:+61795013 | None:intergenic |
| ATGCTACAAATACCGGGACT+TGG | 0.480370 | 5_1:+61794726 | None:intergenic |
| GTTTCTCGCAATTCAAAGAC+AGG | 0.484105 | 5_1:+61797069 | None:intergenic |
| AGTCACATTGATAAAATTCA+CGG | 0.491051 | 5_1:+61796738 | None:intergenic |
| CCAAGACTTACTCCAACTGC+TGG | 0.492326 | 5_1:+61795353 | None:intergenic |
| ACTAGGACTTCTGTCTTGGT+TGG | 0.498862 | 5_1:+61795017 | None:intergenic |
| GAGGCACGGTGCCACAGCCT+TGG | 0.500657 | 5_1:-61797097 | Msa0741990:five_prime_UTR |
| ATGGTCTGACATCTTTGAAA+AGG | 0.502813 | 5_1:-61796812 | Msa0741990:five_prime_UTR |
| CCAGCAGTTGGAGTAAGTCT+TGG | 0.503274 | 5_1:-61795353 | Msa0741990:CDS |
| TCACGGTATCTTCCTTTAGA+CGG | 0.504569 | 5_1:+61796755 | None:intergenic |
| TCAAAGCAAGTTCCAGCAGT+TGG | 0.509043 | 5_1:-61795365 | Msa0741990:CDS |
| TAATTCAAATCGTCTTGATA+AGG | 0.512542 | 5_1:-61795642 | Msa0741990:CDS |
| CAAAAGTATCAAGAATCCCT+TGG | 0.513316 | 5_1:-61794878 | Msa0741990:CDS |
| TGGTCAAGGAACTTCGGAAA+CGG | 0.514207 | 5_1:-61794755 | Msa0741990:CDS |
| AGAAGGGACAACCCGTCTAA+AGG | 0.515018 | 5_1:-61796767 | Msa0741990:five_prime_UTR |
| TTCAAATCGTCTTGATAAGG+TGG | 0.524034 | 5_1:-61795639 | Msa0741990:CDS |
| GCACTAGCTGCAAAGCTAGT+TGG | 0.526132 | 5_1:-61794972 | Msa0741990:CDS |
| AGTATAATAATCAAGACCTC+TGG | 0.528138 | 5_1:+61795598 | None:intergenic |
| CAGGTTGGTTCAATTGCTGC+TGG | 0.530641 | 5_1:-61795422 | Msa0741990:CDS |
| AGTGCTTTCTTAGAAAATGC+TGG | 0.533444 | 5_1:-61795713 | Msa0741990:CDS |
| CATTCCCTAATATGCTCACT+AGG | 0.533716 | 5_1:+61795000 | None:intergenic |
| TGCTACAAATACCGGGACTT+GGG | 0.534214 | 5_1:+61794727 | None:intergenic |
| TTGCTTGATGAGCTCAACAT+TGG | 0.534227 | 5_1:-61796649 | Msa0741990:CDS |
| AGAATTTGGTCAAGGAACTT+CGG | 0.539021 | 5_1:-61794761 | Msa0741990:CDS |
| CAACTGATAAGCCTCGAGTC+AGG | 0.540687 | 5_1:-61794813 | Msa0741990:CDS |
| ATCCCTTGGATGATACTTGT+TGG | 0.551773 | 5_1:-61794864 | Msa0741990:CDS |
| TGGTGAACTGTGGGATGATG+GGG | 0.553463 | 5_1:-61794952 | Msa0741990:CDS |
| GGATGATACTTGTTGGTGAA+CGG | 0.564673 | 5_1:-61794857 | Msa0741990:CDS |
| GTCGATATGATAACCTGATA+GGG | 0.575105 | 5_1:-61795397 | Msa0741990:CDS |
| GGAGCAAGAGCAACAGCAGA+AGG | 0.575602 | 5_1:-61795306 | Msa0741990:CDS |
| GACAGGTGTATCCAAGGCTG+TGG | 0.579031 | 5_1:+61797086 | None:intergenic |
| TTCAAAGACAGGTGTATCCA+AGG | 0.588118 | 5_1:+61797080 | None:intergenic |
| CCCTAGAAAGAATTTGGTCA+AGG | 0.591194 | 5_1:-61794769 | Msa0741990:CDS |
| CAAAGCTAGTTGGTGAACTG+TGG | 0.591938 | 5_1:-61794962 | Msa0741990:CDS |
| AATCATAGAAAGTTACTGGA+TGG | 0.593254 | 5_1:-61796345 | Msa0741990:CDS |
| GGTGAACGGGAAATAAAAGA+AGG | 0.600425 | 5_1:-61794843 | Msa0741990:CDS |
| TCACCAACAAGTATCATCCA+AGG | 0.611109 | 5_1:+61794861 | None:intergenic |
| TTATCAAAACTGAAACAAGA+TGG | 0.616367 | 5_1:-61795737 | Msa0741990:CDS |
| TTTGACTTGAGTCTTGCCAG+AGG | 0.617274 | 5_1:-61795614 | Msa0741990:CDS |
| GCTTGATGAGCTCAACATTG+GGG | 0.624676 | 5_1:-61796647 | Msa0741990:CDS |
| TGTTGATGCATTGAATGACC+TGG | 0.626342 | 5_1:-61795687 | Msa0741990:CDS |
| AAACGGTTAAACCCAAGTCC+CGG | 0.628093 | 5_1:-61794738 | Msa0741990:CDS |
| GATGGCATGATGCAAATATG+TGG | 0.628341 | 5_1:-61796327 | Msa0741990:CDS |
| TTACATCATTACCTGACTCG+AGG | 0.629762 | 5_1:+61794802 | None:intergenic |
| AAAGCTAGTTGGTGAACTGT+GGG | 0.635647 | 5_1:-61794961 | Msa0741990:CDS |
| GTTGGTTCAATTGCTGCTGG+TGG | 0.636788 | 5_1:-61795419 | Msa0741990:CDS |
| AAAAGATAAAGTCTACAGAA+GGG | 0.637354 | 5_1:-61796783 | Msa0741990:five_prime_UTR |
| CACCAACAAGTATCATCCAA+GGG | 0.637651 | 5_1:+61794862 | None:intergenic |
| ACAGCAGAAGGATAAGAACC+AGG | 0.639760 | 5_1:-61795294 | Msa0741990:intron |
| AATAGGATGCTACAAATACC+GGG | 0.646508 | 5_1:+61794720 | None:intergenic |
| ACGGGAAATAAAAGAAGGCA+CGG | 0.674425 | 5_1:-61794838 | Msa0741990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAATAAAAATCATTACAA+AGG | + | chr5_1:61795628-61795647 | None:intergenic | 15.0% |
| !! | ACTAAAGCAAAAATATAAAA+AGG | + | chr5_1:61796602-61796621 | None:intergenic | 15.0% |
| !!! | TTTTATATTTTTGCTTTAGT+TGG | - | chr5_1:61796602-61796621 | Msa0741990:intron | 15.0% |
| !!! | TAATAAAAGAAGTTTTTGAG+AGG | - | chr5_1:61794699-61794718 | Msa0741990:CDS | 20.0% |
| !! | TTGAATAGATAAAGTTGAAT+GGG | - | chr5_1:61794897-61794916 | Msa0741990:CDS | 20.0% |
| !! | TAAATTATAGCAAATAAGCT+GGG | + | chr5_1:61795287-61795306 | None:intergenic | 20.0% |
| !! | TTAAATTATAGCAAATAAGC+TGG | + | chr5_1:61795288-61795307 | None:intergenic | 20.0% |
| !!! | TGAATGATAATGATATTGTA+AGG | + | chr5_1:61795311-61795330 | None:intergenic | 20.0% |
| !!! | TGATTTTTATTATGATTGTG+CGG | - | chr5_1:61795634-61795653 | Msa0741990:CDS | 20.0% |
| !!! | AGTTTTGATAATACTGTTAA+AGG | + | chr5_1:61796069-61796088 | None:intergenic | 20.0% |
| !! | AAATATAAAAAGGAAAACAC+TGG | + | chr5_1:61796592-61796611 | None:intergenic | 20.0% |
| !!! | ACTTTGTTGTTTTTATTAGA+TGG | - | chr5_1:61796770-61796789 | Msa0741990:five_prime_UTR | 20.0% |
| !!! | TGAGTTGATTTTAAGAACAT+TGG | - | chr5_1:61794843-61794862 | Msa0741990:CDS | 25.0% |
| !!! | GAGTTGATTTTAAGAACATT+GGG | - | chr5_1:61794844-61794863 | Msa0741990:CDS | 25.0% |
| ! | CTTGAATAGATAAAGTTGAA+TGG | - | chr5_1:61794896-61794915 | Msa0741990:CDS | 25.0% |
| ! | AAAAAGATAAAGTCTACAGA+AGG | - | chr5_1:61795031-61795050 | Msa0741990:intron | 25.0% |
| ! | AAAAGATAAAGTCTACAGAA+GGG | - | chr5_1:61795032-61795051 | Msa0741990:intron | 25.0% |
| ! | AGTCACATTGATAAAATTCA+CGG | + | chr5_1:61795080-61795099 | None:intergenic | 25.0% |
| ! | ATGAAAGTTAACCACTAAAT+TGG | + | chr5_1:61795366-61795385 | None:intergenic | 25.0% |
| ! | GTTAAATCATAGAAAGTTAC+TGG | - | chr5_1:61795466-61795485 | Msa0741990:intron | 25.0% |
| ! | AGATAAGAAAAGAAATGGTT+AGG | - | chr5_1:61795579-61795598 | Msa0741990:CDS | 25.0% |
| ! | GATAAGAAAAGAAATGGTTA+GGG | - | chr5_1:61795580-61795599 | Msa0741990:CDS | 25.0% |
| ! | CTTATCAATGAGAAATAGTT+TGG | - | chr5_1:61795756-61795775 | Msa0741990:intron | 25.0% |
| ! | ATTATACCAAAAGAATGCAA+AGG | + | chr5_1:61795807-61795826 | None:intergenic | 25.0% |
| ! | TATAGTTGCATGATTTATTG+AGG | - | chr5_1:61795832-61795851 | Msa0741990:intron | 25.0% |
| !! | TGTTCTAAACTGTTAAAATC+AGG | - | chr5_1:61795909-61795928 | Msa0741990:intron | 25.0% |
| !! | AATGCCATGATTTTGTAATT+TGG | - | chr5_1:61795946-61795965 | Msa0741990:intron | 25.0% |
| ! | CAAACCAAATTACAAAATCA+TGG | + | chr5_1:61795953-61795972 | None:intergenic | 25.0% |
| !! | GGAACTTTTGTTAAAGAAAA+AGG | - | chr5_1:61796035-61796054 | Msa0741990:intron | 25.0% |
| ! | TTATCAAAACTGAAACAAGA+TGG | - | chr5_1:61796078-61796097 | Msa0741990:intron | 25.0% |
| !!! | GAGCTTTAAATAAAATTTCC+AGG | + | chr5_1:61796149-61796168 | None:intergenic | 25.0% |
| !!! | GGAAATTTTATTTAAAGCTC+TGG | - | chr5_1:61796149-61796168 | Msa0741990:intron | 25.0% |
| ! | TAATTCAAATCGTCTTGATA+AGG | - | chr5_1:61796173-61796192 | Msa0741990:intron | 25.0% |
| !!! | ATATTTGAAGCTGTTTTCAA+AGG | - | chr5_1:61796246-61796265 | Msa0741990:intron | 25.0% |
| !!! | TATTTGAAGCTGTTTTCAAA+GGG | - | chr5_1:61796247-61796266 | Msa0741990:intron | 25.0% |
| ! | AATCGAAACAAGATCTAAAT+AGG | + | chr5_1:61797115-61797134 | None:intergenic | 25.0% |
| !! | TATTTAGATCTTGTTTCGAT+TGG | - | chr5_1:61797114-61797133 | Msa0741990:five_prime_UTR | 25.0% |
| AGCTACAAATCTAGCAAATA+TGG | + | chr5_1:61794979-61794998 | None:intergenic | 30.0% | |
| ! | GCTGGTTCTTATGAAAAAAA+TGG | - | chr5_1:61795108-61795127 | Msa0741990:intron | 30.0% |
| ATTCTAACAACCTCAAAATC+TGG | + | chr5_1:61795136-61795155 | None:intergenic | 30.0% | |
| GTCACATTTAACAAGATCAT+GGG | + | chr5_1:61795252-61795271 | None:intergenic | 30.0% | |
| AGTCACATTTAACAAGATCA+TGG | + | chr5_1:61795253-61795272 | None:intergenic | 30.0% | |
| ATCATTCATTTGAATGTGTC+TGG | - | chr5_1:61795323-61795342 | Msa0741990:CDS | 30.0% | |
| ! | ACTGTAGTTTTCCAATTTAG+TGG | - | chr5_1:61795352-61795371 | Msa0741990:CDS | 30.0% |
| ACAACAGAAGAAAGATAGTA+AGG | + | chr5_1:61795423-61795442 | None:intergenic | 30.0% | |
| AATCATAGAAAGTTACTGGA+TGG | - | chr5_1:61795470-61795489 | Msa0741990:intron | 30.0% | |
| !!! | ATAGTTCTAAACTTTTCCTG+AGG | + | chr5_1:61795518-61795537 | None:intergenic | 30.0% |
| CGAACAGATAAGAAAAGAAA+TGG | - | chr5_1:61795574-61795593 | Msa0741990:CDS | 30.0% | |
| ! | GAAATAGTTTGGTTTAACCA+TGG | - | chr5_1:61795767-61795786 | Msa0741990:intron | 30.0% |
| AACAAAAGTTCCGATTCTAT+CGG | + | chr5_1:61796027-61796046 | None:intergenic | 30.0% | |
| AGTATAATAATCAAGACCTC+TGG | + | chr5_1:61796220-61796239 | None:intergenic | 30.0% | |
| AGAGGTCTTGATTATTATAC+TGG | - | chr5_1:61796219-61796238 | Msa0741990:intron | 30.0% | |
| !! | ATTTGAAGCTGTTTTCAAAG+GGG | - | chr5_1:61796248-61796267 | Msa0741990:intron | 30.0% |
| ACAGAAGAAACATTTCAGAA+TGG | + | chr5_1:61796309-61796328 | None:intergenic | 30.0% | |
| TGCATTTATCTTCTGCTTTA+TGG | - | chr5_1:61796362-61796381 | Msa0741990:intron | 30.0% | |
| TTTATGGTTTATACACAGGT+TGG | - | chr5_1:61796378-61796397 | Msa0741990:intron | 30.0% | |
| GTTTAAATGTGAGTTACCAA+GGG | + | chr5_1:61796724-61796743 | None:intergenic | 30.0% | |
| TGTTTAAATGTGAGTTACCA+AGG | + | chr5_1:61796725-61796744 | None:intergenic | 30.0% | |
| AAACATCCCTAGAAAGAATT+TGG | - | chr5_1:61797040-61797059 | Msa0741990:five_prime_UTR | 30.0% | |
| AAATAGGATGCTACAAATAC+CGG | + | chr5_1:61797099-61797118 | None:intergenic | 30.0% | |
| !! | AAAGAAGTTTTTGAGAGGCA+CGG | - | chr5_1:61794704-61794723 | Msa0741990:CDS | 35.0% |
| TTGAATTGCGAGAAACTCTA+TGG | - | chr5_1:61794753-61794772 | Msa0741990:CDS | 35.0% | |
| GATTTATGATCTTGCTGATC+AGG | - | chr5_1:61794791-61794810 | Msa0741990:CDS | 35.0% | |
| GCTAGATTTGTAGCTATGAA+TGG | - | chr5_1:61794984-61795003 | Msa0741990:CDS | 35.0% | |
| ! | ATGGTCTGACATCTTTGAAA+AGG | - | chr5_1:61795003-61795022 | Msa0741990:CDS | 35.0% |
| CAATGTGACTTTGATATTGC+TGG | - | chr5_1:61795090-61795109 | Msa0741990:intron | 35.0% | |
| ! | AAAAATGGCTCCAGATTTTG+AGG | - | chr5_1:61795123-61795142 | Msa0741990:intron | 35.0% |
| ! | TTTAACCATGGAGTTCTAGT+CGG | - | chr5_1:61795779-61795798 | Msa0741990:intron | 35.0% |
| TAATTAAGTAACCAGTGACG+CGG | + | chr5_1:61795867-61795886 | None:intergenic | 35.0% | |
| !!! | TGTACCGACTTTTATGTTGT+AGG | - | chr5_1:61795971-61795990 | Msa0741990:intron | 35.0% |
| TCCACCTACAACATAAAAGT+CGG | + | chr5_1:61795978-61795997 | None:intergenic | 35.0% | |
| AGTGCTTTCTTAGAAAATGC+TGG | - | chr5_1:61796102-61796121 | Msa0741990:intron | 35.0% | |
| TTCAAATCGTCTTGATAAGG+TGG | - | chr5_1:61796176-61796195 | Msa0741990:intron | 35.0% | |
| !! | TTTGAAGCTGTTTTCAAAGG+GGG | - | chr5_1:61796249-61796268 | Msa0741990:intron | 35.0% |
| CTGCTTTATGGTTTATACAC+AGG | - | chr5_1:61796374-61796393 | Msa0741990:intron | 35.0% | |
| GTCGATATGATAACCTGATA+GGG | - | chr5_1:61796418-61796437 | Msa0741990:intron | 35.0% | |
| AATCAAGCATTATGATCACC+TGG | + | chr5_1:61796542-61796561 | None:intergenic | 35.0% | |
| AAGTCCTAGTGAGCATATTA+GGG | - | chr5_1:61796811-61796830 | Msa0741990:five_prime_UTR | 35.0% | |
| !! | AGAGCTTTGATCTTCTTTTG+TGG | + | chr5_1:61796908-61796927 | None:intergenic | 35.0% |
| !! | CAAAAGTATCAAGAATCCCT+TGG | - | chr5_1:61796937-61796956 | Msa0741990:intron | 35.0% |
| CCTTGACCAAATTCTTTCTA+GGG | + | chr5_1:61797049-61797068 | None:intergenic | 35.0% | |
| TCCTTGACCAAATTCTTTCT+AGG | + | chr5_1:61797050-61797069 | None:intergenic | 35.0% | |
| AGAATTTGGTCAAGGAACTT+CGG | - | chr5_1:61797054-61797073 | Msa0741990:five_prime_UTR | 35.0% | |
| AATAGGATGCTACAAATACC+GGG | + | chr5_1:61797098-61797117 | None:intergenic | 35.0% | |
| TTCAAAGACAGGTGTATCCA+AGG | + | chr5_1:61794738-61794757 | None:intergenic | 40.0% | |
| GTTTCTCGCAATTCAAAGAC+AGG | + | chr5_1:61794749-61794768 | None:intergenic | 40.0% | |
| ATGGGTTTGAGCTAATTGAC+AGG | - | chr5_1:61794915-61794934 | Msa0741990:CDS | 40.0% | |
| TGGGTTTGAGCTAATTGACA+GGG | - | chr5_1:61794916-61794935 | Msa0741990:CDS | 40.0% | |
| TTTGAGCTAATTGACAGGGT+GGG | - | chr5_1:61794920-61794939 | Msa0741990:CDS | 40.0% | |
| TCACGGTATCTTCCTTTAGA+CGG | + | chr5_1:61795063-61795082 | None:intergenic | 40.0% | |
| TTGCTTGATGAGCTCAACAT+TGG | - | chr5_1:61795166-61795185 | Msa0741990:intron | 40.0% | |
| TGCTTGATGAGCTCAACATT+GGG | - | chr5_1:61795167-61795186 | Msa0741990:intron | 40.0% | |
| GATGGCATGATGCAAATATG+TGG | - | chr5_1:61795488-61795507 | Msa0741990:intron | 40.0% | |
| GTTGTGCTTAAACTGTTCCT+TGG | - | chr5_1:61795666-61795685 | Msa0741990:CDS | 40.0% | |
| !!! | GCACGTTTTGAAAGATGGTT+AGG | - | chr5_1:61795692-61795711 | Msa0741990:CDS | 40.0% |
| !! | ACCGACTTTTATGTTGTAGG+TGG | - | chr5_1:61795974-61795993 | Msa0741990:intron | 40.0% |
| ATGTTGTAGGTGGAAGAGAA+AGG | - | chr5_1:61795984-61796003 | Msa0741990:intron | 40.0% | |
| TGTTGATGCATTGAATGACC+TGG | - | chr5_1:61796128-61796147 | Msa0741990:intron | 40.0% | |
| CCTCAAGGATGAACTATGAA+GGG | + | chr5_1:61796335-61796354 | None:intergenic | 40.0% | |
| CCTTCATAGTTCATCCTTGA+GGG | - | chr5_1:61796333-61796352 | Msa0741990:CDS | 40.0% | |
| GGTCGATATGATAACCTGAT+AGG | - | chr5_1:61796417-61796436 | Msa0741990:intron | 40.0% | |
| GATAACCTGATAGGGATGTT+TGG | - | chr5_1:61796426-61796445 | Msa0741990:intron | 40.0% | |
| TTGAACCAAACATCCCTATC+AGG | + | chr5_1:61796434-61796453 | None:intergenic | 40.0% | |
| !! | CGAGAGAGTATTTGCGATAA+TGG | - | chr5_1:61796488-61796507 | Msa0741990:intron | 40.0% |
| !! | GAAACGCAGAAGCTCTAAAT+TGG | + | chr5_1:61796669-61796688 | None:intergenic | 40.0% |
| TAGTAACTGTGATTCACCCT+TGG | - | chr5_1:61796705-61796724 | Msa0741990:exon | 40.0% | |
| GAAGTCCTAGTGAGCATATT+AGG | - | chr5_1:61796810-61796829 | Msa0741990:five_prime_UTR | 40.0% | |
| CATTCCCTAATATGCTCACT+AGG | + | chr5_1:61796818-61796837 | None:intergenic | 40.0% | |
| !! | AAAGCTAGTTGGTGAACTGT+GGG | - | chr5_1:61796854-61796873 | Msa0741990:five_prime_UTR | 40.0% |
| ATCCCTTGGATGATACTTGT+TGG | - | chr5_1:61796951-61796970 | Msa0741990:intron | 40.0% | |
| CACCAACAAGTATCATCCAA+GGG | + | chr5_1:61796956-61796975 | None:intergenic | 40.0% | |
| TCACCAACAAGTATCATCCA+AGG | + | chr5_1:61796957-61796976 | None:intergenic | 40.0% | |
| ! | GGATGATACTTGTTGGTGAA+CGG | - | chr5_1:61796958-61796977 | Msa0741990:intron | 40.0% |
| ! | GATGATACTTGTTGGTGAAC+GGG | - | chr5_1:61796959-61796978 | Msa0741990:intron | 40.0% |
| GGTGAACGGGAAATAAAAGA+AGG | - | chr5_1:61796972-61796991 | Msa0741990:intron | 40.0% | |
| ACGGGAAATAAAAGAAGGCA+CGG | - | chr5_1:61796977-61796996 | Msa0741990:intron | 40.0% | |
| ! | TTACATCATTACCTGACTCG+AGG | + | chr5_1:61797016-61797035 | None:intergenic | 40.0% |
| CCCTAGAAAGAATTTGGTCA+AGG | - | chr5_1:61797046-61797065 | Msa0741990:five_prime_UTR | 40.0% | |
| ! | AGATCTTGTTTCGATTGGCT+TGG | - | chr5_1:61797119-61797138 | Msa0741990:five_prime_UTR | 40.0% |
| !! | GATCTTGTTTCGATTGGCTT+GGG | - | chr5_1:61797120-61797139 | Msa0741990:five_prime_UTR | 40.0% |
| GTTTGAGCTAATTGACAGGG+TGG | - | chr5_1:61794919-61794938 | Msa0741990:CDS | 45.0% | |
| TTGAGCTAATTGACAGGGTG+GGG | - | chr5_1:61794921-61794940 | Msa0741990:CDS | 45.0% | |
| CACGGTATCTTCCTTTAGAC+GGG | + | chr5_1:61795062-61795081 | None:intergenic | 45.0% | |
| GCTTGATGAGCTCAACATTG+GGG | - | chr5_1:61795168-61795187 | Msa0741990:intron | 45.0% | |
| ! | GCTCAACATTGGGGATTTTG+AGG | - | chr5_1:61795177-61795196 | Msa0741990:intron | 45.0% |
| !! | TGCCTGCTGATTGAGTTTTG+CGG | - | chr5_1:61795223-61795242 | Msa0741990:intron | 45.0% |
| CTTTCAAAACGTGCAAGCCA+AGG | + | chr5_1:61795686-61795705 | None:intergenic | 45.0% | |
| !!! | GGCTTGCACGTTTTGAAAGA+TGG | - | chr5_1:61795687-61795706 | Msa0741990:CDS | 45.0% |
| !! | TCGGTGCCTTTGCATTCTTT+TGG | - | chr5_1:61795798-61795817 | Msa0741990:intron | 45.0% |
| !! | TTTGACTTGAGTCTTGCCAG+AGG | - | chr5_1:61796201-61796220 | Msa0741990:intron | 45.0% |
| CCCTTCATAGTTCATCCTTG+AGG | - | chr5_1:61796332-61796351 | Msa0741990:CDS | 45.0% | |
| CCCTCAAGGATGAACTATGA+AGG | + | chr5_1:61796336-61796355 | None:intergenic | 45.0% | |
| TAAATGCATTGCGACCCTCA+AGG | + | chr5_1:61796350-61796369 | None:intergenic | 45.0% | |
| TCAAAGCAAGTTCCAGCAGT+TGG | - | chr5_1:61796450-61796469 | Msa0741990:intron | 45.0% | |
| ACAGCAGAAGGATAAGAACC+AGG | - | chr5_1:61796521-61796540 | Msa0741990:intron | 45.0% | |
| CATCTAGATTTCGTGCGTCT+GGG | + | chr5_1:61796644-61796663 | None:intergenic | 45.0% | |
| ACTAGGACTTCTGTCTTGGT+TGG | + | chr5_1:61796801-61796820 | None:intergenic | 45.0% | |
| !! | CAAAGCTAGTTGGTGAACTG+TGG | - | chr5_1:61796853-61796872 | Msa0741990:five_prime_UTR | 45.0% |
| TTGGTGAACTGTGGGATGAT+GGG | - | chr5_1:61796862-61796881 | Msa0741990:five_prime_UTR | 45.0% | |
| TGGTCAAGGAACTTCGGAAA+CGG | - | chr5_1:61797060-61797079 | Msa0741990:five_prime_UTR | 45.0% | |
| AAACGGTTAAACCCAAGTCC+CGG | - | chr5_1:61797077-61797096 | Msa0741990:five_prime_UTR | 45.0% | |
| TGCTACAAATACCGGGACTT+GGG | + | chr5_1:61797091-61797110 | None:intergenic | 45.0% | |
| ATGCTACAAATACCGGGACT+TGG | + | chr5_1:61797092-61797111 | None:intergenic | 45.0% | |
| GTGGGGAGCTATGTTCTTTG+AGG | - | chr5_1:61794938-61794957 | Msa0741990:CDS | 50.0% | |
| AGAAGGGACAACCCGTCTAA+AGG | - | chr5_1:61795048-61795067 | Msa0741990:intron | 50.0% | |
| !! | GCCTGCTGATTGAGTTTTGC+GGG | - | chr5_1:61795224-61795243 | Msa0741990:intron | 50.0% |
| ! | GCAAATATGTGGAGCACCTC+AGG | - | chr5_1:61795499-61795518 | Msa0741990:intron | 50.0% |
| GTCGAGACAGCCGATAGAAT+CGG | - | chr5_1:61796014-61796033 | Msa0741990:intron | 50.0% | |
| !!! | TGTTTTCAAAGGGGGTGCTC+AGG | - | chr5_1:61796257-61796276 | Msa0741990:intron | 50.0% |
| !! | CAGGTTGGTTCAATTGCTGC+TGG | - | chr5_1:61796393-61796412 | Msa0741990:intron | 50.0% |
| ! | GTTGGTTCAATTGCTGCTGG+TGG | - | chr5_1:61796396-61796415 | Msa0741990:intron | 50.0% |
| CCAAGACTTACTCCAACTGC+TGG | + | chr5_1:61796465-61796484 | None:intergenic | 50.0% | |
| CCAGCAGTTGGAGTAAGTCT+TGG | - | chr5_1:61796462-61796481 | Msa0741990:intron | 50.0% | |
| GCATCTAGATTTCGTGCGTC+TGG | + | chr5_1:61796645-61796664 | None:intergenic | 50.0% | |
| GCTCACTAGGACTTCTGTCT+TGG | + | chr5_1:61796805-61796824 | None:intergenic | 50.0% | |
| GCACTAGCTGCAAAGCTAGT+TGG | - | chr5_1:61796843-61796862 | Msa0741990:five_prime_UTR | 50.0% | |
| ! | GTTGGTGAACTGTGGGATGA+TGG | - | chr5_1:61796861-61796880 | Msa0741990:five_prime_UTR | 50.0% |
| TGGTGAACTGTGGGATGATG+GGG | - | chr5_1:61796863-61796882 | Msa0741990:five_prime_UTR | 50.0% | |
| TGGGGTGAAAGCAGAGTTCT+TGG | - | chr5_1:61796881-61796900 | Msa0741990:five_prime_UTR | 50.0% | |
| CAACTGATAAGCCTCGAGTC+AGG | - | chr5_1:61797002-61797021 | Msa0741990:intron | 50.0% | |
| GACAGGTGTATCCAAGGCTG+TGG | + | chr5_1:61794732-61794751 | None:intergenic | 55.0% | |
| GCCCGCAAAACTCAATCAGC+AGG | + | chr5_1:61795228-61795247 | None:intergenic | 55.0% | |
| !! | AGGCACCGACTAGAACTCCA+TGG | + | chr5_1:61795787-61795806 | None:intergenic | 55.0% |
| GGAGCAAGAGCAACAGCAGA+AGG | - | chr5_1:61796509-61796528 | Msa0741990:intron | 55.0% | |
| GGATGCAAACACCGCGTCAC+TGG | - | chr5_1:61795853-61795872 | Msa0741990:intron | 60.0% | |
| !! | GAGGCACGGTGCCACAGCCT+TGG | - | chr5_1:61794718-61794737 | Msa0741990:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 61794686 | 61797151 | 61794686 | ID=Msa0741990;Name=Msa0741990 |
| chr5_1 | mRNA | 61794686 | 61797151 | 61794686 | ID=Msa0741990-mRNA-1;Parent=Msa0741990;Name=Msa0741990-mRNA-1;_AED=0.17;_eAED=0.17;_QI=308|0.4|0.33|1|0.8|0.66|6|0|292 |
| chr5_1 | exon | 61794686 | 61795048 | 61794686 | ID=Msa0741990-mRNA-1:exon:18054;Parent=Msa0741990-mRNA-1 |
| chr5_1 | exon | 61795295 | 61795441 | 61795295 | ID=Msa0741990-mRNA-1:exon:18053;Parent=Msa0741990-mRNA-1 |
| chr5_1 | exon | 61795559 | 61795761 | 61795559 | ID=Msa0741990-mRNA-1:exon:18052;Parent=Msa0741990-mRNA-1 |
| chr5_1 | exon | 61796292 | 61796376 | 61796292 | ID=Msa0741990-mRNA-1:exon:18051;Parent=Msa0741990-mRNA-1 |
| chr5_1 | exon | 61796639 | 61796900 | 61796639 | ID=Msa0741990-mRNA-1:exon:18050;Parent=Msa0741990-mRNA-1 |
| chr5_1 | exon | 61797025 | 61797151 | 61797025 | ID=Msa0741990-mRNA-1:exon:18049;Parent=Msa0741990-mRNA-1 |
| chr5_1 | five_prime_UTR | 61797025 | 61797151 | 61797025 | ID=Msa0741990-mRNA-1:five_prime_utr;Parent=Msa0741990-mRNA-1 |
| chr5_1 | five_prime_UTR | 61796720 | 61796900 | 61796720 | ID=Msa0741990-mRNA-1:five_prime_utr;Parent=Msa0741990-mRNA-1 |
| chr5_1 | CDS | 61796639 | 61796719 | 61796639 | ID=Msa0741990-mRNA-1:cds;Parent=Msa0741990-mRNA-1 |
| chr5_1 | CDS | 61796292 | 61796376 | 61796292 | ID=Msa0741990-mRNA-1:cds;Parent=Msa0741990-mRNA-1 |
| chr5_1 | CDS | 61795559 | 61795761 | 61795559 | ID=Msa0741990-mRNA-1:cds;Parent=Msa0741990-mRNA-1 |
| chr5_1 | CDS | 61795295 | 61795441 | 61795295 | ID=Msa0741990-mRNA-1:cds;Parent=Msa0741990-mRNA-1 |
| chr5_1 | CDS | 61794686 | 61795048 | 61794686 | ID=Msa0741990-mRNA-1:cds;Parent=Msa0741990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
