Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0594140 | XP_039688589.1 | 73.913 | 69 | 4 | 2 | 1 | 68 | 75 | 130 | 2.10e-22 | 93.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007450 | Msa0594140 | 0.815069 | 1.116639e-51 | -8.615850e-47 |
| Msa0010460 | Msa0594140 | -0.809935 | 1.479670e-50 | -8.615850e-47 |
| Msa0075850 | Msa0594140 | 0.800358 | 1.496253e-48 | -8.615850e-47 |
| Msa0155540 | Msa0594140 | 0.800985 | 1.114679e-48 | -8.615850e-47 |
| Msa0230400 | Msa0594140 | 0.800161 | 1.641208e-48 | -8.615850e-47 |
| Msa0376900 | Msa0594140 | 0.803624 | 3.190170e-49 | -8.615850e-47 |
| Msa0396970 | Msa0594140 | 0.805273 | 1.445233e-49 | -8.615850e-47 |
| Msa0413180 | Msa0594140 | 0.807186 | 5.716108e-50 | -8.615850e-47 |
| Msa0476180 | Msa0594140 | 0.802264 | 6.092643e-49 | -8.615850e-47 |
| Msa0477780 | Msa0594140 | 0.835950 | 1.244943e-56 | -8.615850e-47 |
| Msa0253410 | Msa0594140 | 0.809740 | 1.629483e-50 | -8.615850e-47 |
| Msa0274780 | Msa0594140 | 0.811298 | 7.509777e-51 | -8.615850e-47 |
| Msa0315480 | Msa0594140 | 0.801928 | 7.142796e-49 | -8.615850e-47 |
| Msa0538240 | Msa0594140 | 0.863696 | 2.070317e-64 | -8.615850e-47 |
| Msa0594140 | Msa0594150 | 0.811052 | 8.491137e-51 | -8.615850e-47 |
| Msa0594140 | Msa0594180 | 0.818858 | 1.574141e-52 | -8.615850e-47 |
| Msa0594140 | Msa0607300 | 0.803025 | 4.244791e-49 | -8.615850e-47 |
| Msa0594140 | Msa0633880 | 0.826867 | 2.143579e-54 | -8.615850e-47 |
| Msa0594140 | Msa0703760 | 0.805847 | 1.095243e-49 | -8.615850e-47 |
| Msa0594140 | Msa0709480 | 0.809297 | 2.029057e-50 | -8.615850e-47 |
| Msa0594140 | Msa0938970 | 0.819031 | 1.438017e-52 | -8.615850e-47 |
| Msa0594140 | Msa0975910 | 0.805472 | 1.313156e-49 | -8.615850e-47 |
| Msa0594140 | Msa1028460 | 0.804870 | 1.755124e-49 | -8.615850e-47 |
| Msa0594140 | Msa1070900 | 0.803726 | 3.038521e-49 | -8.615850e-47 |
| Msa0594140 | Msa1084490 | 0.804696 | 1.908591e-49 | -8.615850e-47 |
| Msa0594140 | Msa1090230 | 0.800722 | 1.261403e-48 | -8.615850e-47 |
| Msa0594140 | Msa1125780 | 0.801434 | 9.019272e-49 | -8.615850e-47 |
| Msa0594140 | Msa1125950 | 0.802595 | 5.207409e-49 | -8.615850e-47 |
| Msa0594140 | Msa1149760 | 0.815248 | 1.018779e-51 | -8.615850e-47 |
| Msa0594140 | Msa1166180 | 0.805926 | 1.054136e-49 | -8.615850e-47 |
| Msa0594140 | Msa1166280 | 0.805155 | 1.530007e-49 | -8.615850e-47 |
| Msa0594140 | Msa1171340 | 0.800896 | 1.162044e-48 | -8.615850e-47 |
| Msa0594140 | Msa1200920 | 0.831478 | 1.631639e-55 | -8.615850e-47 |
| Msa0594140 | Msa1214900 | 0.807390 | 5.174808e-50 | -8.615850e-47 |
| Msa0594140 | Msa1271600 | 0.800899 | 1.160613e-48 | -8.615850e-47 |
| Msa0594140 | Msa1367940 | 0.823158 | 1.610283e-53 | -8.615850e-47 |
| Msa0594140 | Msa1376640 | 0.800077 | 1.706605e-48 | -8.615850e-47 |
| Msa0594140 | Msa1460650 | 0.803507 | 3.373422e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0594140 | MtrunA17_Chr4g0012941 | 87.179 | 39 | 4 | 1 | 1 | 38 | 41 | 79 | 3.02e-18 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 26 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACTGCTTCACAACAATA+TGG | 0.222130 | 4_2:+21238581 | None:intergenic |
| GAATACCACATAAGGCAAAT+AGG | 0.312154 | 4_2:+21238450 | None:intergenic |
| ATTCGTTGCATGTATCGTTT+TGG | 0.351230 | 4_2:-21238714 | Msa0594140:five_prime_UTR |
| AATCTATCAGCTTCTGCAAT+AGG | 0.389891 | 4_2:+21238671 | None:intergenic |
| AGTAAGAGTATAAATAATAA+AGG | 0.397290 | 4_2:+21238646 | None:intergenic |
| AATACCACATAAGGCAAATA+GGG | 0.405661 | 4_2:+21238451 | None:intergenic |
| GAAATATAACCTTGAAGAAA+AGG | 0.420263 | 4_2:+21238614 | None:intergenic |
| TGGTTATATTTACAGAATCA+AGG | 0.425590 | 4_2:-21235959 | Msa0594140:intron |
| AGTTGATATCGCGAGTAATC+TGG | 0.431895 | 4_2:+21238417 | None:intergenic |
| GTGGAAGTTGTGGCGGATGT+TGG | 0.448150 | 4_2:-21235934 | Msa0594140:CDS |
| TCACTGCTTCACAACAATAT+GGG | 0.474158 | 4_2:+21238582 | None:intergenic |
| TTGTGACTGCTAGAGAGATA+TGG | 0.476164 | 4_2:-21238513 | Msa0594140:exon |
| GCTGCCCTATTTGCCTTATG+TGG | 0.498988 | 4_2:-21238455 | Msa0594140:CDS |
| GGTTATATTTACAGAATCAA+GGG | 0.515885 | 4_2:-21235958 | Msa0594140:intron |
| GGGTGTTTGAATACCACATA+AGG | 0.517200 | 4_2:+21238442 | None:intergenic |
| AAATTAAGCACTCTATATAG+TGG | 0.524276 | 4_2:+21235894 | None:intergenic |
| CCTTGAAGAAAAGGATAGCA+TGG | 0.525784 | 4_2:+21238623 | None:intergenic |
| TTCTTTAAAGACTTTGAATG+TGG | 0.531694 | 4_2:-21238486 | Msa0594140:CDS |
| AAGACTTTGAATGTGGAGAA+TGG | 0.533346 | 4_2:-21238479 | Msa0594140:CDS |
| AATCAAGGGTGTGGAAGTTG+TGG | 0.551229 | 4_2:-21235944 | Msa0594140:CDS |
| TATTTACAGAATCAAGGGTG+TGG | 0.556405 | 4_2:-21235953 | Msa0594140:intron |
| TTGTGGCGGATGTTGGATCA+AGG | 0.564536 | 4_2:-21235927 | Msa0594140:CDS |
| GATATCGCGAGTAATCTGGT+AGG | 0.618889 | 4_2:+21238421 | None:intergenic |
| ATATCGCGAGTAATCTGGTA+GGG | 0.629903 | 4_2:+21238422 | None:intergenic |
| TAGACGATCATCATAGTCGA+TGG | 0.640137 | 4_2:+21238541 | None:intergenic |
| CAAGGGTGTGGAAGTTGTGG+CGG | 0.655854 | 4_2:-21235941 | Msa0594140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATATAATATAATCTATT+TGG | - | chr4_2:21236315-21236334 | Msa0594140:intron | 10.0% |
| !! | TAAAATAAACAATTTAGTTA+AGG | - | chr4_2:21237128-21237147 | Msa0594140:intron | 10.0% |
| !!! | TTTATCTAAATTCATTTTTA+AGG | + | chr4_2:21237287-21237306 | None:intergenic | 10.0% |
| !! | AAAATATAGTAAAATATATC+AGG | + | chr4_2:21237403-21237422 | None:intergenic | 10.0% |
| !!! | TTTTTTTTAACAAACAAAAA+TGG | + | chr4_2:21238118-21238137 | None:intergenic | 10.0% |
| !!! | AGTAAGAGTATAAATAATAA+AGG | + | chr4_2:21235971-21235990 | None:intergenic | 15.0% |
| !!! | TTGATTTTTATTTTCTTTTC+TGG | - | chr4_2:21236793-21236812 | Msa0594140:intron | 15.0% |
| !!! | TGATTTTTATTTTCTTTTCT+GGG | - | chr4_2:21236794-21236813 | Msa0594140:intron | 15.0% |
| !! | AAAATTAATAAAGTATATGG+TGG | - | chr4_2:21236978-21236997 | Msa0594140:intron | 15.0% |
| !! | TAACCTTAAATATCTAATAT+GGG | + | chr4_2:21237021-21237040 | None:intergenic | 15.0% |
| !! | TTAACCTTAAATATCTAATA+TGG | + | chr4_2:21237022-21237041 | None:intergenic | 15.0% |
| !! | TAATTTGACAGAAAATATAT+TGG | - | chr4_2:21237222-21237241 | Msa0594140:intron | 15.0% |
| !! | TAAAATATATCAGGAAATAA+CGG | + | chr4_2:21237394-21237413 | None:intergenic | 15.0% |
| !! | CTAAATTATCCTTAAAAAAA+AGG | + | chr4_2:21237472-21237491 | None:intergenic | 15.0% |
| !!! | GTTCAAATATTTTTCATTTA+AGG | + | chr4_2:21237681-21237700 | None:intergenic | 15.0% |
| !!! | TACTTTTGTTGATTATTTAA+TGG | - | chr4_2:21238401-21238420 | Msa0594140:intron | 15.0% |
| !!! | ATAAATTTCTTATTTACCTT+TGG | + | chr4_2:21238619-21238638 | None:intergenic | 15.0% |
| !!! | TTATTAATGACTTCTTTTAT+TGG | - | chr4_2:21238635-21238654 | Msa0594140:five_prime_UTR | 15.0% |
| !! | TCAATGTTATGTTATTGTTA+TGG | + | chr4_2:21236272-21236291 | None:intergenic | 20.0% |
| !! | AATCTCGTTTATATATTAGT+TGG | - | chr4_2:21236524-21236543 | Msa0594140:intron | 20.0% |
| !!! | AGATTGTTGATGATTATTTT+TGG | - | chr4_2:21236747-21236766 | Msa0594140:intron | 20.0% |
| !!! | ATTTAAGGTTAAAGTGTTAA+CGG | - | chr4_2:21237030-21237049 | Msa0594140:intron | 20.0% |
| !!! | TGAGAAGTTTTTTTTAGTTA+AGG | - | chr4_2:21237097-21237116 | Msa0594140:intron | 20.0% |
| !!! | GAGAAGTTTTTTTTAGTTAA+GGG | - | chr4_2:21237098-21237117 | Msa0594140:intron | 20.0% |
| !! | ATTATGCCTAAAAAATTTGA+AGG | - | chr4_2:21237163-21237182 | Msa0594140:intron | 20.0% |
| !!! | TCATTTTTAAGGATTTGATA+GGG | + | chr4_2:21237276-21237295 | None:intergenic | 20.0% |
| !!! | TTCATTTTTAAGGATTTGAT+AGG | + | chr4_2:21237277-21237296 | None:intergenic | 20.0% |
| !! | ATACCAATATTGCAATTAAT+CGG | - | chr4_2:21237308-21237327 | Msa0594140:intron | 20.0% |
| !! | AAAATATATCAGGAAATAAC+GGG | + | chr4_2:21237393-21237412 | None:intergenic | 20.0% |
| !!! | TTCTTTCATCCTTTTTTTTA+AGG | - | chr4_2:21237460-21237479 | Msa0594140:intron | 20.0% |
| !!! | TGAAATGAGTCAATTATTTT+AGG | + | chr4_2:21237933-21237952 | None:intergenic | 20.0% |
| !! | AAATACACTAATATTTGACA+AGG | - | chr4_2:21238195-21238214 | Msa0594140:intron | 20.0% |
| !! | AATACACTAATATTTGACAA+GGG | - | chr4_2:21238196-21238215 | Msa0594140:intron | 20.0% |
| !! | AAGAAAAATGTATTAGTGAA+GGG | + | chr4_2:21238244-21238263 | None:intergenic | 20.0% |
| !! | TAAGAAAAATGTATTAGTGA+AGG | + | chr4_2:21238245-21238264 | None:intergenic | 20.0% |
| !!! | ATAAAGCTAGAGTTTTTTTA+GGG | + | chr4_2:21238542-21238561 | None:intergenic | 20.0% |
| !!! | CAATTTTGAAAATAAATCCT+AGG | + | chr4_2:21238575-21238594 | None:intergenic | 20.0% |
| !!! | TAGTTAATGAATTTTTCCAA+AGG | - | chr4_2:21238600-21238619 | Msa0594140:five_prime_UTR | 20.0% |
| ! | GAAATATAACCTTGAAGAAA+AGG | + | chr4_2:21236003-21236022 | None:intergenic | 25.0% |
| !! | TTCTTTAAAGACTTTGAATG+TGG | - | chr4_2:21236128-21236147 | Msa0594140:intron | 25.0% |
| !! | TTAGTGAAAGTATACATACT+TGG | + | chr4_2:21236226-21236245 | None:intergenic | 25.0% |
| ! | TCGTTTATATATTAGTTGGT+AGG | - | chr4_2:21236528-21236547 | Msa0594140:intron | 25.0% |
| ! | TAATATAATATGCAGCACAA+CGG | + | chr4_2:21236697-21236716 | None:intergenic | 25.0% |
| !!! | TTTTATTTTCTTTTCTGGGT+AGG | - | chr4_2:21236798-21236817 | Msa0594140:intron | 25.0% |
| ! | GGGAAAAAATTAGATATTGA+TGG | - | chr4_2:21236879-21236898 | Msa0594140:intron | 25.0% |
| !! | AATTAGATATTGATGGTTCA+CGG | - | chr4_2:21236886-21236905 | Msa0594140:intron | 25.0% |
| !!! | TTTTTTAAAAAGAAGACCGT+TGG | + | chr4_2:21236936-21236955 | None:intergenic | 25.0% |
| !! | ATATGGGCTAAAATTAAAAG+TGG | + | chr4_2:21237005-21237024 | None:intergenic | 25.0% |
| ! | TAGCCCATATTAGATATTTA+AGG | - | chr4_2:21237015-21237034 | Msa0594140:intron | 25.0% |
| ! | TTTCTTGCCTTTATATGTTA+TGG | + | chr4_2:21237062-21237081 | None:intergenic | 25.0% |
| ! | CTAAAAAAAACTTCTCAAAG+TGG | + | chr4_2:21237094-21237113 | None:intergenic | 25.0% |
| !!! | TTCATGCCTTCAAATTTTTT+AGG | + | chr4_2:21237172-21237191 | None:intergenic | 25.0% |
| ! | TATCCGATTAATTGCAATAT+TGG | + | chr4_2:21237314-21237333 | None:intergenic | 25.0% |
| ! | GTCAAGGAGTTATATATTTA+GGG | + | chr4_2:21237510-21237529 | None:intergenic | 25.0% |
| ! | AGTCAAGGAGTTATATATTT+AGG | + | chr4_2:21237511-21237530 | None:intergenic | 25.0% |
| ! | TCATTGATAAATACAATGAG+GGG | + | chr4_2:21237635-21237654 | None:intergenic | 25.0% |
| ! | CTCATTGATAAATACAATGA+GGG | + | chr4_2:21237636-21237655 | None:intergenic | 25.0% |
| ! | TCTCATTGATAAATACAATG+AGG | + | chr4_2:21237637-21237656 | None:intergenic | 25.0% |
| !!! | AATGAGAGAAACTTTTTCAT+GGG | - | chr4_2:21237650-21237669 | Msa0594140:intron | 25.0% |
| !! | TGCTCAAAAGTTTTTCATTT+GGG | - | chr4_2:21237804-21237823 | Msa0594140:intron | 25.0% |
| ! | CCATGAAAGAATTAAAGATA+CGG | - | chr4_2:21237834-21237853 | Msa0594140:intron | 25.0% |
| ! | AGAAAAATGTATTAGTGAAG+GGG | + | chr4_2:21238243-21238262 | None:intergenic | 25.0% |
| ! | AAAACTCACTTAAATTGAGA+CGG | - | chr4_2:21238286-21238305 | Msa0594140:intron | 25.0% |
| ! | AATTCAAAGACAGTCTTTAT+TGG | - | chr4_2:21238364-21238383 | Msa0594140:intron | 25.0% |
| ! | ATTCAAAGACAGTCTTTATT+GGG | - | chr4_2:21238365-21238384 | Msa0594140:intron | 25.0% |
| !! | TTTAAGATTGAGTCACTATT+TGG | - | chr4_2:21238470-21238489 | Msa0594140:CDS | 25.0% |
| !!! | TAAAGCTAGAGTTTTTTTAG+GGG | + | chr4_2:21238541-21238560 | None:intergenic | 25.0% |
| !!! | GATAAAGCTAGAGTTTTTTT+AGG | + | chr4_2:21238543-21238562 | None:intergenic | 25.0% |
| ! | TGGTTATATTTACAGAATCA+AGG | - | chr4_2:21238655-21238674 | Msa0594140:five_prime_UTR | 25.0% |
| ! | GGTTATATTTACAGAATCAA+GGG | - | chr4_2:21238656-21238675 | Msa0594140:five_prime_UTR | 25.0% |
| ! | AAATTAAGCACTCTATATAG+TGG | + | chr4_2:21238723-21238742 | None:intergenic | 25.0% |
| AATACCACATAAGGCAAATA+GGG | + | chr4_2:21236166-21236185 | None:intergenic | 30.0% | |
| ! | ACTTGTGCTTTATGAGATTT+TGG | - | chr4_2:21236627-21236646 | Msa0594140:intron | 30.0% |
| ! | TTTATGAGATTTTGGACCAA+GGG | - | chr4_2:21236635-21236654 | Msa0594140:intron | 30.0% |
| AATATAATATGCAGCACAAC+GGG | + | chr4_2:21236696-21236715 | None:intergenic | 30.0% | |
| ! | TATTTTGCGTATGAAGTTGA+AGG | - | chr4_2:21236721-21236740 | Msa0594140:intron | 30.0% |
| AGTAAGAAGATGAAGAAAAG+AGG | - | chr4_2:21236858-21236877 | Msa0594140:intron | 30.0% | |
| GTAAGAAGATGAAGAAAAGA+GGG | - | chr4_2:21236859-21236878 | Msa0594140:intron | 30.0% | |
| CATATAAAGGCAAGAAACTT+AGG | - | chr4_2:21237065-21237084 | Msa0594140:intron | 30.0% | |
| ATAACTCCTTGACTAAATGA+TGG | - | chr4_2:21237517-21237536 | Msa0594140:intron | 30.0% | |
| TAACTCCTTGACTAAATGAT+GGG | - | chr4_2:21237518-21237537 | Msa0594140:intron | 30.0% | |
| AAATTCCCATCATTTAGTCA+AGG | + | chr4_2:21237526-21237545 | None:intergenic | 30.0% | |
| ! | TGACTAAATGATGGGAATTT+AGG | - | chr4_2:21237526-21237545 | Msa0594140:intron | 30.0% |
| !!! | CAATGAGAGAAACTTTTTCA+TGG | - | chr4_2:21237649-21237668 | Msa0594140:intron | 30.0% |
| ! | GTGCTCAAAAGTTTTTCATT+TGG | - | chr4_2:21237803-21237822 | Msa0594140:intron | 30.0% |
| ! | GCTCAAAAGTTTTTCATTTG+GGG | - | chr4_2:21237805-21237824 | Msa0594140:intron | 30.0% |
| CCGTATCTTTAATTCTTTCA+TGG | + | chr4_2:21237837-21237856 | None:intergenic | 30.0% | |
| ACAAGAGACTCACTTATTAA+GGG | + | chr4_2:21237898-21237917 | None:intergenic | 30.0% | |
| TACAAGAGACTCACTTATTA+AGG | + | chr4_2:21237899-21237918 | None:intergenic | 30.0% | |
| !! | GCTTTATCGTTTTTATTCCT+AGG | - | chr4_2:21238555-21238574 | Msa0594140:five_prime_UTR | 30.0% |
| ! | ATTCGTTGCATGTATCGTTT+TGG | - | chr4_2:21235900-21235919 | Msa0594140:exon | 35.0% |
| AATCTATCAGCTTCTGCAAT+AGG | + | chr4_2:21235946-21235965 | None:intergenic | 35.0% | |
| TCACTGCTTCACAACAATAT+GGG | + | chr4_2:21236035-21236054 | None:intergenic | 35.0% | |
| TTCACTGCTTCACAACAATA+TGG | + | chr4_2:21236036-21236055 | None:intergenic | 35.0% | |
| AAGACTTTGAATGTGGAGAA+TGG | - | chr4_2:21236135-21236154 | Msa0594140:intron | 35.0% | |
| GAATACCACATAAGGCAAAT+AGG | + | chr4_2:21236167-21236186 | None:intergenic | 35.0% | |
| ! | CTTTATGAGATTTTGGACCA+AGG | - | chr4_2:21236634-21236653 | Msa0594140:intron | 35.0% |
| GAGAGGACCATAACATATAA+AGG | - | chr4_2:21237052-21237071 | Msa0594140:intron | 35.0% | |
| ATGGGAATTTAGGAAGTTGT+TGG | - | chr4_2:21237536-21237555 | Msa0594140:intron | 35.0% | |
| !! | CAAGAGTATTTACAAGGAGA+AGG | + | chr4_2:21238035-21238054 | None:intergenic | 35.0% |
| TCCTTGTAAATACTCTTGAG+TGG | - | chr4_2:21238037-21238056 | Msa0594140:intron | 35.0% | |
| !! | ACCACTCAAGAGTATTTACA+AGG | + | chr4_2:21238041-21238060 | None:intergenic | 35.0% |
| !! | AACTAATACTTCTGAGACAC+TGG | + | chr4_2:21238437-21238456 | None:intergenic | 35.0% |
| TATTTACAGAATCAAGGGTG+TGG | - | chr4_2:21238661-21238680 | Msa0594140:five_prime_UTR | 35.0% | |
| CCTTGAAGAAAAGGATAGCA+TGG | + | chr4_2:21235994-21236013 | None:intergenic | 40.0% | |
| ! | CCATGCTATCCTTTTCTTCA+AGG | - | chr4_2:21235991-21236010 | Msa0594140:intron | 40.0% |
| TAGACGATCATCATAGTCGA+TGG | + | chr4_2:21236076-21236095 | None:intergenic | 40.0% | |
| TTGTGACTGCTAGAGAGATA+TGG | - | chr4_2:21236101-21236120 | Msa0594140:intron | 40.0% | |
| GGGTGTTTGAATACCACATA+AGG | + | chr4_2:21236175-21236194 | None:intergenic | 40.0% | |
| ATATCGCGAGTAATCTGGTA+GGG | + | chr4_2:21236195-21236214 | None:intergenic | 40.0% | |
| ! | AGTTGATATCGCGAGTAATC+TGG | + | chr4_2:21236200-21236219 | None:intergenic | 40.0% |
| AATAGAGTTGCACGATCCAA+CGG | - | chr4_2:21236917-21236936 | Msa0594140:intron | 40.0% | |
| ! | AGGTTAAAGTGTTAACGGAG+AGG | - | chr4_2:21237035-21237054 | Msa0594140:intron | 40.0% |
| TTGAGCACACTCACATCAAA+TGG | + | chr4_2:21237791-21237810 | None:intergenic | 40.0% | |
| ACTCACTTATTAAGGGACGA+AGG | + | chr4_2:21237891-21237910 | None:intergenic | 40.0% | |
| !! | TACAAGGAGAAGGTGCTAAA+AGG | + | chr4_2:21238025-21238044 | None:intergenic | 40.0% |
| ACTCACTTAAATTGAGACGG+AGG | - | chr4_2:21238289-21238308 | Msa0594140:intron | 40.0% | |
| CTCACTTAAATTGAGACGGA+GGG | - | chr4_2:21238290-21238309 | Msa0594140:intron | 40.0% | |
| GATATCGCGAGTAATCTGGT+AGG | + | chr4_2:21236196-21236215 | None:intergenic | 45.0% | |
| GGACCAAGGGATTTCGAAAA+CGG | - | chr4_2:21236648-21236667 | Msa0594140:intron | 45.0% | |
| GACCAAGGGATTTCGAAAAC+GGG | - | chr4_2:21236649-21236668 | Msa0594140:intron | 45.0% | |
| !! | GAGAAGGTGCTAAAAGGAGA+AGG | + | chr4_2:21238019-21238038 | None:intergenic | 45.0% |
| ! | AATCAAGGGTGTGGAAGTTG+TGG | - | chr4_2:21238670-21238689 | Msa0594140:five_prime_UTR | 45.0% |
| !! | AAAAAAAATATATAATCTAT+AGG | - | chr4_2:21236340-21236359 | Msa0594140:intron | 5.0% |
| !! | AAAAAAATTAATAAAGTATA+TGG | - | chr4_2:21236975-21236994 | Msa0594140:intron | 5.0% |
| !!! | ATAAAATTTAGATTTTTTTT+TGG | - | chr4_2:21237424-21237443 | Msa0594140:intron | 5.0% |
| GCTGCCCTATTTGCCTTATG+TGG | - | chr4_2:21236159-21236178 | Msa0594140:intron | 50.0% | |
| ! | CTCCCGTTTTCGAAATCCCT+TGG | + | chr4_2:21236654-21236673 | None:intergenic | 50.0% |
| CCGCACAAGGCATGCTAAAA+GGG | + | chr4_2:21238066-21238085 | None:intergenic | 50.0% | |
| ! | CCCTTTTAGCATGCCTTGTG+CGG | - | chr4_2:21238063-21238082 | Msa0594140:intron | 50.0% |
| ! | CCTTTTAGCATGCCTTGTGC+GGG | - | chr4_2:21238064-21238083 | Msa0594140:intron | 50.0% |
| ! | CTTTTAGCATGCCTTGTGCG+GGG | - | chr4_2:21238065-21238084 | Msa0594140:intron | 50.0% |
| ! | TTTTAGCATGCCTTGTGCGG+GGG | - | chr4_2:21238066-21238085 | Msa0594140:intron | 50.0% |
| !! | TTGTGGCGGATGTTGGATCA+AGG | - | chr4_2:21238687-21238706 | Msa0594140:five_prime_UTR | 50.0% |
| CCCGCACAAGGCATGCTAAA+AGG | + | chr4_2:21238067-21238086 | None:intergenic | 55.0% | |
| TAGCAGATAACCCCCGCACA+AGG | + | chr4_2:21238079-21238098 | None:intergenic | 55.0% | |
| ! | CAAGGGTGTGGAAGTTGTGG+CGG | - | chr4_2:21238673-21238692 | Msa0594140:five_prime_UTR | 55.0% |
| !! | GTGGAAGTTGTGGCGGATGT+TGG | - | chr4_2:21238680-21238699 | Msa0594140:five_prime_UTR | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 21235887 | 21238749 | 21235887 | ID=Msa0594140;Name=Msa0594140 |
| chr4_2 | mRNA | 21235887 | 21238749 | 21235887 | ID=Msa0594140-mRNA-1;Parent=Msa0594140;Name=Msa0594140-mRNA-1;_AED=0.36;_eAED=0.36;_QI=233|0.5|0.66|1|1|1|3|19|68 |
| chr4_2 | exon | 21235887 | 21235966 | 21235887 | ID=Msa0594140-mRNA-1:exon:5949;Parent=Msa0594140-mRNA-1 |
| chr4_2 | exon | 21237778 | 21237816 | 21237778 | ID=Msa0594140-mRNA-1:exon:5948;Parent=Msa0594140-mRNA-1 |
| chr4_2 | exon | 21238410 | 21238749 | 21238410 | ID=Msa0594140-mRNA-1:exon:5947;Parent=Msa0594140-mRNA-1 |
| chr4_2 | five_prime_UTR | 21238517 | 21238749 | 21238517 | ID=Msa0594140-mRNA-1:five_prime_utr;Parent=Msa0594140-mRNA-1 |
| chr4_2 | CDS | 21238410 | 21238516 | 21238410 | ID=Msa0594140-mRNA-1:cds;Parent=Msa0594140-mRNA-1 |
| chr4_2 | CDS | 21237778 | 21237816 | 21237778 | ID=Msa0594140-mRNA-1:cds;Parent=Msa0594140-mRNA-1 |
| chr4_2 | CDS | 21235906 | 21235966 | 21235906 | ID=Msa0594140-mRNA-1:cds;Parent=Msa0594140-mRNA-1 |
| chr4_2 | three_prime_UTR | 21235887 | 21235905 | 21235887 | ID=Msa0594140-mRNA-1:three_prime_utr;Parent=Msa0594140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
