AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0938970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0938970 MtrunA17_Chr6g0454691 90.066 151 12 1 1 151 1 148 2.78e-97 276
Msa0938970 MtrunA17_Chr6g0454651 93.103 87 6 0 65 151 1 87 3.47e-55 168
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0938970 AT5G39210.1 48.077 156 76 2 1 151 1 156 2.09e-43 140

Find 39 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATAACTTTGGTTTCTTAT+TGG 0.236348 6_3:+10855317 Msa0938970:five_prime_UTR
CATTCATGTTTATGAAGTTT+TGG 0.260089 6_3:-10855341 None:intergenic
TGAAAGAGTGGCTCACAAAT+TGG 0.283330 6_3:+10857088 Msa0938970:CDS
AAGAACTAAAACATTGAATT+AGG 0.310142 6_3:-10855943 None:intergenic
CAAACATGTTATTTACAGTT+TGG 0.325891 6_3:+10857347 Msa0938970:three_prime_UTR
GGTGATGTTATATGTATTGC+TGG 0.342148 6_3:-10855917 None:intergenic
AATTCATACGAGCTACTATA+TGG 0.345183 6_3:+10855293 Msa0938970:five_prime_UTR
GGATGAGAGGTTTGTGTCAG+AGG 0.390149 6_3:+10857047 Msa0938970:CDS
CTTGAAATTGATGGAGAAGT+TGG 0.397574 6_3:+10857195 Msa0938970:CDS
ATCAATTTCAAGTTCACAAA+AGG 0.404929 6_3:-10857184 None:intergenic
TACTATATGGATGATAACTT+TGG 0.434572 6_3:+10855306 Msa0938970:five_prime_UTR
AAATAGTTTAATTGAACACT+TGG 0.452882 6_3:+10857372 Msa0938970:three_prime_UTR
GTTTCATATCTTGCTAGATC+AGG 0.459128 6_3:-10857129 None:intergenic
TCAGTGGTATGAAGTTCGTT+TGG 0.464080 6_3:+10857224 Msa0938970:CDS
CAACTTGAGGCAGTCTATGA+TGG 0.478137 6_3:-10855970 None:intergenic
AATGTTCTAAATAACACAAA+TGG 0.505543 6_3:-10857304 None:intergenic
GTATTGCTGGATTCTGCATA+TGG 0.507197 6_3:-10855904 None:intergenic
ACAAACCTCTCATCCTTCCC+TGG 0.513237 6_3:-10857039 None:intergenic
GAAAGAAACAGCATCATCAA+TGG 0.526687 6_3:-10857151 None:intergenic
TGAAAGATACTTTGAAAGAG+TGG 0.529707 6_3:+10857076 Msa0938970:CDS
CTAAAACATTGAATTAGGCC+TGG 0.534335 6_3:-10855938 None:intergenic
TCAGGAGGAAGAGTCTTGCC+AGG 0.535490 6_3:-10857111 None:intergenic
GAGTGGCTCACAAATTGGCC+TGG 0.539314 6_3:+10857093 Msa0938970:CDS
CAACTATGACAATCACAAGT+TGG 0.543984 6_3:-10857276 None:intergenic
TCATATCTTGCTAGATCAGG+AGG 0.578859 6_3:-10857126 None:intergenic
ACTTGTGATTGTCATAGTTG+AGG 0.585919 6_3:+10857279 Msa0938970:three_prime_UTR
TAGAACCAGGGAAGGATGAG+AGG 0.587726 6_3:+10857034 Msa0938970:CDS
TTGTGTCAGTTACAAGAGAA+CGG 0.594667 6_3:-10857327 None:intergenic
AATTGATGGAGAAGTTGGAT+CGG 0.615121 6_3:+10857200 Msa0938970:CDS
ACTTATGTACTATTAGAACC+AGG 0.616078 6_3:+10857021 Msa0938970:CDS
CTGCAATCGAGTGCAACTTG+AGG 0.629225 6_3:-10855983 None:intergenic
TGTACTATTAGAACCAGGGA+AGG 0.630431 6_3:+10857026 Msa0938970:CDS
GAGAAGTTGGATCGGTTCAG+TGG 0.633875 6_3:+10857208 Msa0938970:CDS
CACAAAATAATTAATAACCA+TGG 0.640960 6_3:+10855372 Msa0938970:exon
GCAATACATATAACATCACC+AGG 0.652099 6_3:+10855920 Msa0938970:CDS
CTTATGTACTATTAGAACCA+GGG 0.664769 6_3:+10857022 Msa0938970:CDS
AGGCTGCAAAACAACTACCA+TGG 0.682488 6_3:-10855389 None:intergenic
CGATTGCAGAAGTAAAACAA+AGG 0.695066 6_3:+10855997 Msa0938970:CDS
ACTCTAACATTGAAACCATG+AGG 0.705525 6_3:-10855409 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTCTTATATTTAGTTTTA+AGG + chr6_3:10856089-10856108 Msa0938970:intron 10.0%
!!! GTTAGTTTTTTATTTATTTT+TGG - chr6_3:10856851-10856870 None:intergenic 10.0%
!!! ATTTCTTATATTTAGTTTTA+AGG + chr6_3:10856089-10856108 Msa0938970:intron 10.0%
!!! GTTAGTTTTTTATTTATTTT+TGG - chr6_3:10856851-10856870 None:intergenic 10.0%
!!! ATACATTACATTATTTTTAG+AGG + chr6_3:10855521-10855540 Msa0938970:intron 15.0%
!!! TACATTACATTATTTTTAGA+GGG + chr6_3:10855522-10855541 Msa0938970:intron 15.0%
!! TTAAATTACTATCAATGTTA+TGG - chr6_3:10855762-10855781 None:intergenic 15.0%
!!! AAATTTTGAAAACATACTAT+AGG - chr6_3:10856057-10856076 None:intergenic 15.0%
!! AATAAATAAATAAATCAACC+AGG + chr6_3:10856220-10856239 Msa0938970:intron 15.0%
!!! ATACATTACATTATTTTTAG+AGG + chr6_3:10855521-10855540 Msa0938970:intron 15.0%
!!! TACATTACATTATTTTTAGA+GGG + chr6_3:10855522-10855541 Msa0938970:intron 15.0%
!! TTAAATTACTATCAATGTTA+TGG - chr6_3:10855762-10855781 None:intergenic 15.0%
!!! AAATTTTGAAAACATACTAT+AGG - chr6_3:10856057-10856076 None:intergenic 15.0%
!! AATAAATAAATAAATCAACC+AGG + chr6_3:10856220-10856239 Msa0938970:intron 15.0%
!! CACAAAATAATTAATAACCA+TGG + chr6_3:10855372-10855391 Msa0938970:exon 20.0%
!! TATTATCAATACTAGTAAGT+AGG + chr6_3:10855568-10855587 Msa0938970:intron 20.0%
!! ATTATCAATACTAGTAAGTA+GGG + chr6_3:10855569-10855588 Msa0938970:intron 20.0%
!! AAGAACTAAAACATTGAATT+AGG - chr6_3:10855946-10855965 None:intergenic 20.0%
!!! TATTCTTGTGATTAGTTAAT+AGG + chr6_3:10856250-10856269 Msa0938970:intron 20.0%
!!! ATTCTTGTGATTAGTTAATA+GGG + chr6_3:10856251-10856270 Msa0938970:intron 20.0%
!! TTAGTCAAAACTAATTTACT+CGG + chr6_3:10856616-10856635 Msa0938970:intron 20.0%
!!! AATGTTCTAAATAACACAAA+TGG - chr6_3:10857307-10857326 None:intergenic 20.0%
!! AAATAGTTTAATTGAACACT+TGG + chr6_3:10857372-10857391 Msa0938970:three_prime_UTR 20.0%
!! CACAAAATAATTAATAACCA+TGG + chr6_3:10855372-10855391 Msa0938970:exon 20.0%
!! TATTATCAATACTAGTAAGT+AGG + chr6_3:10855568-10855587 Msa0938970:intron 20.0%
!! ATTATCAATACTAGTAAGTA+GGG + chr6_3:10855569-10855588 Msa0938970:intron 20.0%
!! AAGAACTAAAACATTGAATT+AGG - chr6_3:10855946-10855965 None:intergenic 20.0%
!!! TATTCTTGTGATTAGTTAAT+AGG + chr6_3:10856250-10856269 Msa0938970:intron 20.0%
!!! ATTCTTGTGATTAGTTAATA+GGG + chr6_3:10856251-10856270 Msa0938970:intron 20.0%
!! TTAGTCAAAACTAATTTACT+CGG + chr6_3:10856616-10856635 Msa0938970:intron 20.0%
!!! AATGTTCTAAATAACACAAA+TGG - chr6_3:10857307-10857326 None:intergenic 20.0%
!! AAATAGTTTAATTGAACACT+TGG + chr6_3:10857372-10857391 Msa0938970:three_prime_UTR 20.0%
! TACTATATGGATGATAACTT+TGG + chr6_3:10855306-10855325 Msa0938970:five_prime_UTR 25.0%
!! TGATAACTTTGGTTTCTTAT+TGG + chr6_3:10855317-10855336 Msa0938970:five_prime_UTR 25.0%
!! CATTCATGTTTATGAAGTTT+TGG - chr6_3:10855344-10855363 None:intergenic 25.0%
! ACTCATTTGTATAATTCCTT+AGG + chr6_3:10855593-10855612 Msa0938970:intron 25.0%
! TGAATGATTGTAAAATAGAG+TGG + chr6_3:10855693-10855712 Msa0938970:intron 25.0%
! TAAACAATTGACCATAATCT+TGG + chr6_3:10855779-10855798 Msa0938970:intron 25.0%
! AAACATTCATACCAAGATTA+TGG - chr6_3:10855793-10855812 None:intergenic 25.0%
!!! GTTTTGACTAATCATATGTT+TGG - chr6_3:10856607-10856626 None:intergenic 25.0%
!!! ATCAATTTCAAGTTCACAAA+AGG - chr6_3:10857187-10857206 None:intergenic 25.0%
!! TTTTGTGAACTTGAAATTGA+TGG + chr6_3:10857186-10857205 Msa0938970:CDS 25.0%
!! CAAACATGTTATTTACAGTT+TGG + chr6_3:10857347-10857366 Msa0938970:three_prime_UTR 25.0%
! TACTATATGGATGATAACTT+TGG + chr6_3:10855306-10855325 Msa0938970:five_prime_UTR 25.0%
!! TGATAACTTTGGTTTCTTAT+TGG + chr6_3:10855317-10855336 Msa0938970:five_prime_UTR 25.0%
!! CATTCATGTTTATGAAGTTT+TGG - chr6_3:10855344-10855363 None:intergenic 25.0%
! ACTCATTTGTATAATTCCTT+AGG + chr6_3:10855593-10855612 Msa0938970:intron 25.0%
! TGAATGATTGTAAAATAGAG+TGG + chr6_3:10855693-10855712 Msa0938970:intron 25.0%
! TAAACAATTGACCATAATCT+TGG + chr6_3:10855779-10855798 Msa0938970:intron 25.0%
! AAACATTCATACCAAGATTA+TGG - chr6_3:10855793-10855812 None:intergenic 25.0%
!!! GTTTTGACTAATCATATGTT+TGG - chr6_3:10856607-10856626 None:intergenic 25.0%
!!! ATCAATTTCAAGTTCACAAA+AGG - chr6_3:10857187-10857206 None:intergenic 25.0%
!! TTTTGTGAACTTGAAATTGA+TGG + chr6_3:10857186-10857205 Msa0938970:CDS 25.0%
!! CAAACATGTTATTTACAGTT+TGG + chr6_3:10857347-10857366 Msa0938970:three_prime_UTR 25.0%
AATTCATACGAGCTACTATA+TGG + chr6_3:10855293-10855312 Msa0938970:five_prime_UTR 30.0%
CATTTGTATAATTCCTTAGG+TGG + chr6_3:10855596-10855615 Msa0938970:intron 30.0%
TAAGGCAGAAAATTCCTATA+TGG - chr6_3:10855636-10855655 None:intergenic 30.0%
!! AATTTTCTGCCTTAACTTGA+TGG + chr6_3:10855642-10855661 Msa0938970:intron 30.0%
TGTTTCTTTCCATCAAGTTA+AGG - chr6_3:10855654-10855673 None:intergenic 30.0%
! GATTAGTTAATAGGGTTCTT+TGG + chr6_3:10856259-10856278 Msa0938970:intron 30.0%
!! CTTAACTTTCTCTGAAATCA+GGG - chr6_3:10856300-10856319 None:intergenic 30.0%
TGTGTGTTTGGAAAAAAGTT+TGG - chr6_3:10856446-10856465 None:intergenic 30.0%
TGCTCCTAAGAAATGTTATA+TGG + chr6_3:10856644-10856663 Msa0938970:intron 30.0%
AGGTTAAATGTGATAGTAAC+AGG + chr6_3:10856668-10856687 Msa0938970:intron 30.0%
CAGTCGAGATTCAAATATTA+GGG - chr6_3:10856754-10856773 None:intergenic 30.0%
CTAATATTTGAATCTCGACT+GGG + chr6_3:10856753-10856772 Msa0938970:intron 30.0%
ACTTATGTACTATTAGAACC+AGG + chr6_3:10857021-10857040 Msa0938970:CDS 30.0%
CTTATGTACTATTAGAACCA+GGG + chr6_3:10857022-10857041 Msa0938970:CDS 30.0%
! TGAAAGATACTTTGAAAGAG+TGG + chr6_3:10857076-10857095 Msa0938970:CDS 30.0%
AATTCATACGAGCTACTATA+TGG + chr6_3:10855293-10855312 Msa0938970:five_prime_UTR 30.0%
CATTTGTATAATTCCTTAGG+TGG + chr6_3:10855596-10855615 Msa0938970:intron 30.0%
TAAGGCAGAAAATTCCTATA+TGG - chr6_3:10855636-10855655 None:intergenic 30.0%
!! AATTTTCTGCCTTAACTTGA+TGG + chr6_3:10855642-10855661 Msa0938970:intron 30.0%
TGTTTCTTTCCATCAAGTTA+AGG - chr6_3:10855654-10855673 None:intergenic 30.0%
! GATTAGTTAATAGGGTTCTT+TGG + chr6_3:10856259-10856278 Msa0938970:intron 30.0%
!! CTTAACTTTCTCTGAAATCA+GGG - chr6_3:10856300-10856319 None:intergenic 30.0%
TGTGTGTTTGGAAAAAAGTT+TGG - chr6_3:10856446-10856465 None:intergenic 30.0%
TGCTCCTAAGAAATGTTATA+TGG + chr6_3:10856644-10856663 Msa0938970:intron 30.0%
AGGTTAAATGTGATAGTAAC+AGG + chr6_3:10856668-10856687 Msa0938970:intron 30.0%
CAGTCGAGATTCAAATATTA+GGG - chr6_3:10856754-10856773 None:intergenic 30.0%
CTAATATTTGAATCTCGACT+GGG + chr6_3:10856753-10856772 Msa0938970:intron 30.0%
ACTTATGTACTATTAGAACC+AGG + chr6_3:10857021-10857040 Msa0938970:CDS 30.0%
CTTATGTACTATTAGAACCA+GGG + chr6_3:10857022-10857041 Msa0938970:CDS 30.0%
! TGAAAGATACTTTGAAAGAG+TGG + chr6_3:10857076-10857095 Msa0938970:CDS 30.0%
ACTCTAACATTGAAACCATG+AGG - chr6_3:10855412-10855431 None:intergenic 35.0%
!! CTCCACTGTAAGCTATTTTA+TGG + chr6_3:10855439-10855458 Msa0938970:intron 35.0%
GCTCAAAAGCTGAAAAGATA+AGG - chr6_3:10855465-10855484 None:intergenic 35.0%
! CCTATATGGTAAGCCAATTT+TGG - chr6_3:10855622-10855641 None:intergenic 35.0%
! CCAAAATTGGCTTACCATAT+AGG + chr6_3:10855619-10855638 Msa0938970:intron 35.0%
GGTGATGTTATATGTATTGC+TGG - chr6_3:10855920-10855939 None:intergenic 35.0%
GCAATACATATAACATCACC+AGG + chr6_3:10855920-10855939 Msa0938970:CDS 35.0%
CTAAAACATTGAATTAGGCC+TGG - chr6_3:10855941-10855960 None:intergenic 35.0%
CGATTGCAGAAGTAAAACAA+AGG + chr6_3:10855997-10856016 Msa0938970:CDS 35.0%
AGATTTCAGAAGATACTGCA+GGG - chr6_3:10856029-10856048 None:intergenic 35.0%
!! GCTTAACTTTCTCTGAAATC+AGG - chr6_3:10856301-10856320 None:intergenic 35.0%
GAGAAAGTTAAGCATGTGTT+TGG + chr6_3:10856308-10856327 Msa0938970:intron 35.0%
AGTTAAGCATGTGTTTGGTA+TGG + chr6_3:10856313-10856332 Msa0938970:intron 35.0%
AATGCACTTTCACTGTGATT+TGG - chr6_3:10856405-10856424 None:intergenic 35.0%
! AAATCACAGTGAAAGTGCAT+TGG + chr6_3:10856404-10856423 Msa0938970:intron 35.0%
! AATCACAGTGAAAGTGCATT+GGG + chr6_3:10856405-10856424 Msa0938970:intron 35.0%
AAACATGCTAAGTGTGTGTT+TGG - chr6_3:10856458-10856477 None:intergenic 35.0%
AAACACACACTTAGCATGTT+TGG + chr6_3:10856457-10856476 Msa0938970:intron 35.0%
TTGACGTGGAAGATTTGATT+TGG + chr6_3:10856519-10856538 Msa0938970:intron 35.0%
! TTGGAGCTTTGATGAATTTG+CGG + chr6_3:10856538-10856557 Msa0938970:intron 35.0%
CCTGCCATATAACATTTCTT+AGG - chr6_3:10856651-10856670 None:intergenic 35.0%
CCTAAGAAATGTTATATGGC+AGG + chr6_3:10856648-10856667 Msa0938970:intron 35.0%
CCAGTCGAGATTCAAATATT+AGG - chr6_3:10856755-10856774 None:intergenic 35.0%
CCTAATATTTGAATCTCGAC+TGG + chr6_3:10856752-10856771 Msa0938970:intron 35.0%
TATCCAACTGTGCTTCAAAT+AGG + chr6_3:10856794-10856813 Msa0938970:intron 35.0%
! AATCCTATTTGAAGCACAGT+TGG - chr6_3:10856800-10856819 None:intergenic 35.0%
! CACTGAACTTTGTTTGTAAC+AGG + chr6_3:10856957-10856976 Msa0938970:intron 35.0%
! TGTAACAGGTTTTTGCAATG+AGG + chr6_3:10856971-10856990 Msa0938970:intron 35.0%
! TTTTTGCAATGAGGAGAAGA+AGG + chr6_3:10856980-10856999 Msa0938970:CDS 35.0%
! TTTTGCAATGAGGAGAAGAA+GGG + chr6_3:10856981-10857000 Msa0938970:CDS 35.0%
GTTTCATATCTTGCTAGATC+AGG - chr6_3:10857132-10857151 None:intergenic 35.0%
GAAAGAAACAGCATCATCAA+TGG - chr6_3:10857154-10857173 None:intergenic 35.0%
CTTGAAATTGATGGAGAAGT+TGG + chr6_3:10857195-10857214 Msa0938970:CDS 35.0%
AATTGATGGAGAAGTTGGAT+CGG + chr6_3:10857200-10857219 Msa0938970:CDS 35.0%
CAACTATGACAATCACAAGT+TGG - chr6_3:10857279-10857298 None:intergenic 35.0%
ACTTGTGATTGTCATAGTTG+AGG + chr6_3:10857279-10857298 Msa0938970:three_prime_UTR 35.0%
TTGTGTCAGTTACAAGAGAA+CGG - chr6_3:10857330-10857349 None:intergenic 35.0%
ACTCTAACATTGAAACCATG+AGG - chr6_3:10855412-10855431 None:intergenic 35.0%
!! CTCCACTGTAAGCTATTTTA+TGG + chr6_3:10855439-10855458 Msa0938970:intron 35.0%
GCTCAAAAGCTGAAAAGATA+AGG - chr6_3:10855465-10855484 None:intergenic 35.0%
! CCTATATGGTAAGCCAATTT+TGG - chr6_3:10855622-10855641 None:intergenic 35.0%
! CCAAAATTGGCTTACCATAT+AGG + chr6_3:10855619-10855638 Msa0938970:intron 35.0%
GGTGATGTTATATGTATTGC+TGG - chr6_3:10855920-10855939 None:intergenic 35.0%
GCAATACATATAACATCACC+AGG + chr6_3:10855920-10855939 Msa0938970:CDS 35.0%
CTAAAACATTGAATTAGGCC+TGG - chr6_3:10855941-10855960 None:intergenic 35.0%
CGATTGCAGAAGTAAAACAA+AGG + chr6_3:10855997-10856016 Msa0938970:CDS 35.0%
AGATTTCAGAAGATACTGCA+GGG - chr6_3:10856029-10856048 None:intergenic 35.0%
!! GCTTAACTTTCTCTGAAATC+AGG - chr6_3:10856301-10856320 None:intergenic 35.0%
GAGAAAGTTAAGCATGTGTT+TGG + chr6_3:10856308-10856327 Msa0938970:intron 35.0%
AGTTAAGCATGTGTTTGGTA+TGG + chr6_3:10856313-10856332 Msa0938970:intron 35.0%
AATGCACTTTCACTGTGATT+TGG - chr6_3:10856405-10856424 None:intergenic 35.0%
! AAATCACAGTGAAAGTGCAT+TGG + chr6_3:10856404-10856423 Msa0938970:intron 35.0%
! AATCACAGTGAAAGTGCATT+GGG + chr6_3:10856405-10856424 Msa0938970:intron 35.0%
AAACATGCTAAGTGTGTGTT+TGG - chr6_3:10856458-10856477 None:intergenic 35.0%
AAACACACACTTAGCATGTT+TGG + chr6_3:10856457-10856476 Msa0938970:intron 35.0%
TTGACGTGGAAGATTTGATT+TGG + chr6_3:10856519-10856538 Msa0938970:intron 35.0%
! TTGGAGCTTTGATGAATTTG+CGG + chr6_3:10856538-10856557 Msa0938970:intron 35.0%
CCTGCCATATAACATTTCTT+AGG - chr6_3:10856651-10856670 None:intergenic 35.0%
CCTAAGAAATGTTATATGGC+AGG + chr6_3:10856648-10856667 Msa0938970:intron 35.0%
CCAGTCGAGATTCAAATATT+AGG - chr6_3:10856755-10856774 None:intergenic 35.0%
CCTAATATTTGAATCTCGAC+TGG + chr6_3:10856752-10856771 Msa0938970:intron 35.0%
TATCCAACTGTGCTTCAAAT+AGG + chr6_3:10856794-10856813 Msa0938970:intron 35.0%
! AATCCTATTTGAAGCACAGT+TGG - chr6_3:10856800-10856819 None:intergenic 35.0%
! CACTGAACTTTGTTTGTAAC+AGG + chr6_3:10856957-10856976 Msa0938970:intron 35.0%
! TGTAACAGGTTTTTGCAATG+AGG + chr6_3:10856971-10856990 Msa0938970:intron 35.0%
! TTTTTGCAATGAGGAGAAGA+AGG + chr6_3:10856980-10856999 Msa0938970:CDS 35.0%
! TTTTGCAATGAGGAGAAGAA+GGG + chr6_3:10856981-10857000 Msa0938970:CDS 35.0%
GTTTCATATCTTGCTAGATC+AGG - chr6_3:10857132-10857151 None:intergenic 35.0%
GAAAGAAACAGCATCATCAA+TGG - chr6_3:10857154-10857173 None:intergenic 35.0%
CTTGAAATTGATGGAGAAGT+TGG + chr6_3:10857195-10857214 Msa0938970:CDS 35.0%
AATTGATGGAGAAGTTGGAT+CGG + chr6_3:10857200-10857219 Msa0938970:CDS 35.0%
CAACTATGACAATCACAAGT+TGG - chr6_3:10857279-10857298 None:intergenic 35.0%
ACTTGTGATTGTCATAGTTG+AGG + chr6_3:10857279-10857298 Msa0938970:three_prime_UTR 35.0%
TTGTGTCAGTTACAAGAGAA+CGG - chr6_3:10857330-10857349 None:intergenic 35.0%
GGCCATAAAATAGCTTACAG+TGG - chr6_3:10855444-10855463 None:intergenic 40.0%
ATTCCTTAGGTGGCCAAAAT+TGG + chr6_3:10855606-10855625 Msa0938970:intron 40.0%
! TGTTATGGCTGCATTTGCTA+TGG - chr6_3:10855747-10855766 None:intergenic 40.0%
GTATTGCTGGATTCTGCATA+TGG - chr6_3:10855907-10855926 None:intergenic 40.0%
GAGATTTCAGAAGATACTGC+AGG - chr6_3:10856030-10856049 None:intergenic 40.0%
TCACAAGAATACTAAGAGCC+TGG - chr6_3:10856241-10856260 None:intergenic 40.0%
!! ACTTTCTCTGAAATCAGGGT+TGG - chr6_3:10856296-10856315 None:intergenic 40.0%
CGTTGGAACTTGCAAAATCA+CGG + chr6_3:10856336-10856355 Msa0938970:intron 40.0%
TCACGGTGGAAAATCAAGTT+TGG + chr6_3:10856353-10856372 Msa0938970:intron 40.0%
CACGGTGGAAAATCAAGTTT+GGG + chr6_3:10856354-10856373 Msa0938970:intron 40.0%
! AGTGAAAGTGCATTGGGAAT+TGG + chr6_3:10856411-10856430 Msa0938970:intron 40.0%
!! AGTGCATTGGGAATTGGTTT+TGG + chr6_3:10856417-10856436 Msa0938970:intron 40.0%
!! ACTTAGCATGTTTGGTTCTG+CGG + chr6_3:10856465-10856484 Msa0938970:intron 40.0%
CGATGAAAATCATGTTGACG+TGG + chr6_3:10856505-10856524 Msa0938970:intron 40.0%
GCACAGTTGGATAATAAACG+CGG - chr6_3:10856787-10856806 None:intergenic 40.0%
AATAGGATTACCTCTCGTGA+AGG + chr6_3:10856811-10856830 Msa0938970:intron 40.0%
ATAGGATTACCTCTCGTGAA+GGG + chr6_3:10856812-10856831 Msa0938970:intron 40.0%
AACATACATGACCAAAGCCA+CGG - chr6_3:10856885-10856904 None:intergenic 40.0%
TGTACTATTAGAACCAGGGA+AGG + chr6_3:10857026-10857045 Msa0938970:CDS 40.0%
TGAAAGAGTGGCTCACAAAT+TGG + chr6_3:10857088-10857107 Msa0938970:CDS 40.0%
TCATATCTTGCTAGATCAGG+AGG - chr6_3:10857129-10857148 None:intergenic 40.0%
TCAGTGGTATGAAGTTCGTT+TGG + chr6_3:10857224-10857243 Msa0938970:CDS 40.0%
GGCCATAAAATAGCTTACAG+TGG - chr6_3:10855444-10855463 None:intergenic 40.0%
ATTCCTTAGGTGGCCAAAAT+TGG + chr6_3:10855606-10855625 Msa0938970:intron 40.0%
! TGTTATGGCTGCATTTGCTA+TGG - chr6_3:10855747-10855766 None:intergenic 40.0%
GTATTGCTGGATTCTGCATA+TGG - chr6_3:10855907-10855926 None:intergenic 40.0%
GAGATTTCAGAAGATACTGC+AGG - chr6_3:10856030-10856049 None:intergenic 40.0%
TCACAAGAATACTAAGAGCC+TGG - chr6_3:10856241-10856260 None:intergenic 40.0%
!! ACTTTCTCTGAAATCAGGGT+TGG - chr6_3:10856296-10856315 None:intergenic 40.0%
CGTTGGAACTTGCAAAATCA+CGG + chr6_3:10856336-10856355 Msa0938970:intron 40.0%
TCACGGTGGAAAATCAAGTT+TGG + chr6_3:10856353-10856372 Msa0938970:intron 40.0%
CACGGTGGAAAATCAAGTTT+GGG + chr6_3:10856354-10856373 Msa0938970:intron 40.0%
! AGTGAAAGTGCATTGGGAAT+TGG + chr6_3:10856411-10856430 Msa0938970:intron 40.0%
!! AGTGCATTGGGAATTGGTTT+TGG + chr6_3:10856417-10856436 Msa0938970:intron 40.0%
!! ACTTAGCATGTTTGGTTCTG+CGG + chr6_3:10856465-10856484 Msa0938970:intron 40.0%
CGATGAAAATCATGTTGACG+TGG + chr6_3:10856505-10856524 Msa0938970:intron 40.0%
GCACAGTTGGATAATAAACG+CGG - chr6_3:10856787-10856806 None:intergenic 40.0%
AATAGGATTACCTCTCGTGA+AGG + chr6_3:10856811-10856830 Msa0938970:intron 40.0%
ATAGGATTACCTCTCGTGAA+GGG + chr6_3:10856812-10856831 Msa0938970:intron 40.0%
AACATACATGACCAAAGCCA+CGG - chr6_3:10856885-10856904 None:intergenic 40.0%
TGTACTATTAGAACCAGGGA+AGG + chr6_3:10857026-10857045 Msa0938970:CDS 40.0%
TGAAAGAGTGGCTCACAAAT+TGG + chr6_3:10857088-10857107 Msa0938970:CDS 40.0%
TCATATCTTGCTAGATCAGG+AGG - chr6_3:10857129-10857148 None:intergenic 40.0%
TCAGTGGTATGAAGTTCGTT+TGG + chr6_3:10857224-10857243 Msa0938970:CDS 40.0%
AGGCTGCAAAACAACTACCA+TGG - chr6_3:10855392-10855411 None:intergenic 45.0%
!! GTAGTTGTTTTGCAGCCTCA+TGG + chr6_3:10855394-10855413 Msa0938970:CDS 45.0%
!! AAGCCAATTTTGGCCACCTA+AGG - chr6_3:10855612-10855631 None:intergenic 45.0%
CAACTTGAGGCAGTCTATGA+TGG - chr6_3:10855973-10855992 None:intergenic 45.0%
!! CTGAAATCAGGGTTGGTACT+TGG - chr6_3:10856289-10856308 None:intergenic 45.0%
TGGAACTTGCAAAATCACGG+TGG + chr6_3:10856339-10856358 Msa0938970:intron 45.0%
!! CTTAGCATGTTTGGTTCTGC+GGG + chr6_3:10856466-10856485 Msa0938970:intron 45.0%
!! TTAGCATGTTTGGTTCTGCG+GGG + chr6_3:10856467-10856486 Msa0938970:intron 45.0%
TTCAAGTGCCAACCATGGTT+AGG + chr6_3:10856692-10856711 Msa0938970:intron 45.0%
AGAGCTAATCTTTCACAGCG+TGG + chr6_3:10856725-10856744 Msa0938970:intron 45.0%
ATTTGAATCTCGACTGGGAG+AGG + chr6_3:10856758-10856777 Msa0938970:intron 45.0%
CTACATATTCCCTTCACGAG+AGG - chr6_3:10856824-10856843 None:intergenic 45.0%
AGGCTGCAAAACAACTACCA+TGG - chr6_3:10855392-10855411 None:intergenic 45.0%
!! GTAGTTGTTTTGCAGCCTCA+TGG + chr6_3:10855394-10855413 Msa0938970:CDS 45.0%
!! AAGCCAATTTTGGCCACCTA+AGG - chr6_3:10855612-10855631 None:intergenic 45.0%
CAACTTGAGGCAGTCTATGA+TGG - chr6_3:10855973-10855992 None:intergenic 45.0%
!! CTGAAATCAGGGTTGGTACT+TGG - chr6_3:10856289-10856308 None:intergenic 45.0%
TGGAACTTGCAAAATCACGG+TGG + chr6_3:10856339-10856358 Msa0938970:intron 45.0%
!! CTTAGCATGTTTGGTTCTGC+GGG + chr6_3:10856466-10856485 Msa0938970:intron 45.0%
!! TTAGCATGTTTGGTTCTGCG+GGG + chr6_3:10856467-10856486 Msa0938970:intron 45.0%
TTCAAGTGCCAACCATGGTT+AGG + chr6_3:10856692-10856711 Msa0938970:intron 45.0%
AGAGCTAATCTTTCACAGCG+TGG + chr6_3:10856725-10856744 Msa0938970:intron 45.0%
ATTTGAATCTCGACTGGGAG+AGG + chr6_3:10856758-10856777 Msa0938970:intron 45.0%
CTACATATTCCCTTCACGAG+AGG - chr6_3:10856824-10856843 None:intergenic 45.0%
CTGCAATCGAGTGCAACTTG+AGG - chr6_3:10855986-10856005 None:intergenic 50.0%
GCATGTGTTTGGTATGGCGT+TGG + chr6_3:10856319-10856338 Msa0938970:intron 50.0%
! CACTGTGATTTGGCTGAAGC+TGG - chr6_3:10856395-10856414 None:intergenic 50.0%
! CAGGTTTCAAGTGCCAACCA+TGG + chr6_3:10856687-10856706 Msa0938970:intron 50.0%
CCACTAGACCTAACCATGGT+TGG - chr6_3:10856703-10856722 None:intergenic 50.0%
CCAACCATGGTTAGGTCTAG+TGG + chr6_3:10856700-10856719 Msa0938970:intron 50.0%
CTCTCCACTAGACCTAACCA+TGG - chr6_3:10856707-10856726 None:intergenic 50.0%
! ACTAACTGTGTCAAGTGCCG+TGG + chr6_3:10856865-10856884 Msa0938970:intron 50.0%
TAGAACCAGGGAAGGATGAG+AGG + chr6_3:10857034-10857053 Msa0938970:CDS 50.0%
ACAAACCTCTCATCCTTCCC+TGG - chr6_3:10857042-10857061 None:intergenic 50.0%
GGATGAGAGGTTTGTGTCAG+AGG + chr6_3:10857047-10857066 Msa0938970:CDS 50.0%
! GAGAAGTTGGATCGGTTCAG+TGG + chr6_3:10857208-10857227 Msa0938970:CDS 50.0%
CTGCAATCGAGTGCAACTTG+AGG - chr6_3:10855986-10856005 None:intergenic 50.0%
GCATGTGTTTGGTATGGCGT+TGG + chr6_3:10856319-10856338 Msa0938970:intron 50.0%
! CACTGTGATTTGGCTGAAGC+TGG - chr6_3:10856395-10856414 None:intergenic 50.0%
! CAGGTTTCAAGTGCCAACCA+TGG + chr6_3:10856687-10856706 Msa0938970:intron 50.0%
CCACTAGACCTAACCATGGT+TGG - chr6_3:10856703-10856722 None:intergenic 50.0%
CCAACCATGGTTAGGTCTAG+TGG + chr6_3:10856700-10856719 Msa0938970:intron 50.0%
CTCTCCACTAGACCTAACCA+TGG - chr6_3:10856707-10856726 None:intergenic 50.0%
! ACTAACTGTGTCAAGTGCCG+TGG + chr6_3:10856865-10856884 Msa0938970:intron 50.0%
TAGAACCAGGGAAGGATGAG+AGG + chr6_3:10857034-10857053 Msa0938970:CDS 50.0%
ACAAACCTCTCATCCTTCCC+TGG - chr6_3:10857042-10857061 None:intergenic 50.0%
GGATGAGAGGTTTGTGTCAG+AGG + chr6_3:10857047-10857066 Msa0938970:CDS 50.0%
! GAGAAGTTGGATCGGTTCAG+TGG + chr6_3:10857208-10857227 Msa0938970:CDS 50.0%
! TGTGTCAAGTGCCGTGGCTT+TGG + chr6_3:10856871-10856890 Msa0938970:intron 55.0%
GAGTGGCTCACAAATTGGCC+TGG + chr6_3:10857093-10857112 Msa0938970:CDS 55.0%
TCAGGAGGAAGAGTCTTGCC+AGG - chr6_3:10857114-10857133 None:intergenic 55.0%
! TGTGTCAAGTGCCGTGGCTT+TGG + chr6_3:10856871-10856890 Msa0938970:intron 55.0%
GAGTGGCTCACAAATTGGCC+TGG + chr6_3:10857093-10857112 Msa0938970:CDS 55.0%
TCAGGAGGAAGAGTCTTGCC+AGG - chr6_3:10857114-10857133 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 10855283 10857452 10855283 ID=Msa0938970;Name=Msa0938970
chr6_3 mRNA 10855283 10857452 10855283 ID=Msa0938970-mRNA-1;Parent=Msa0938970;Name=Msa0938970-mRNA-1;_AED=0.01;_eAED=0.01;_QI=108|1|1|1|1|1|3|201|151
chr6_3 exon 10855283 10855445 10855283 ID=Msa0938970-mRNA-1:exon:3487;Parent=Msa0938970-mRNA-1
chr6_3 exon 10855891 10856018 10855891 ID=Msa0938970-mRNA-1:exon:3488;Parent=Msa0938970-mRNA-1
chr6_3 exon 10856979 10857452 10856979 ID=Msa0938970-mRNA-1:exon:3489;Parent=Msa0938970-mRNA-1
chr6_3 five_prime_UTR 10855283 10855390 10855283 ID=Msa0938970-mRNA-1:five_prime_utr;Parent=Msa0938970-mRNA-1
chr6_3 CDS 10855391 10855445 10855391 ID=Msa0938970-mRNA-1:cds;Parent=Msa0938970-mRNA-1
chr6_3 CDS 10855891 10856018 10855891 ID=Msa0938970-mRNA-1:cds;Parent=Msa0938970-mRNA-1
chr6_3 CDS 10856979 10857251 10856979 ID=Msa0938970-mRNA-1:cds;Parent=Msa0938970-mRNA-1
chr6_3 three_prime_UTR 10857252 10857452 10857252 ID=Msa0938970-mRNA-1:three_prime_utr;Parent=Msa0938970-mRNA-1
Gene Sequence

>Msa0938970

ATGGTAGTTGTTTTGCAGCCTCATGGTTTCAATGTTAGAGTTCAGCTTCTCCACTCTACAAAAAGTTACCATATGCAGAATCCAGCAATACATATAACATCACCAGGCCTAATTCAATGTTTTAGTTCTTCTATCCATCATAGACTGCCTCAAGTTGCACTCGATTGCAGAAGTAAAACAAAGGTTTTTGCAATGAGGAGAAGAAGGGCAAATGAAAGAACAGATACTTATGTACTATTAGAACCAGGGAAGGATGAGAGGTTTGTGTCAGAGGAAGAGTTGAAAGATACTTTGAAAGAGTGGCTCACAAATTGGCCTGGCAAGACTCTTCCTCCTGATCTAGCAAGATATGAAACCATTGATGATGCTGTTTCTTTCTTAGCAAAGTCCTTTTGTGAACTTGAAATTGATGGAGAAGTTGGATCGGTTCAGTGGTATGAAGTTCGTTTGGAATGA

Protein sequence

>Msa0938970

MVVVLQPHGFNVRVQLLHSTKSYHMQNPAIHITSPGLIQCFSSSIHHRLPQVALDCRSKTKVFAMRRRRANERTDTYVLLEPGKDERFVSEEELKDTLKEWLTNWPGKTLPPDLARYETIDDAVSFLAKSFCELEIDGEVGSVQWYEVRLE*