AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0396970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0396970 MtrunA17_Chr3g0084331 97.765 179 4 0 1 179 1 179 3.28e-130 362
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0396970 AT1G50900.1 81.538 130 23 1 51 179 46 175 1.73e-76 226

Find 47 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGCAGTACTTCAACTATA+TGG 0.189978 3_2:+15916058 Msa0396970:intron
GCTGAAGGTGCTGGTATTTA+TGG 0.229748 3_2:+15914945 Msa0396970:CDS
TATGCAGCACTGACACTTAA+AGG 0.234259 3_2:+15916491 Msa0396970:three_prime_UTR
AGAAACTTGTGAAGTGATTA+AGG 0.234288 3_2:-15914778 None:intergenic
TCAAGCTTCACCTCTAAATT+TGG 0.237887 3_2:+15914864 Msa0396970:CDS
ATTTCATATGATTTGGCCTT+TGG 0.261082 3_2:+15916391 Msa0396970:three_prime_UTR
CTATGTTATTTCATATGATT+TGG 0.267320 3_2:+15916384 Msa0396970:three_prime_UTR
TCTAAATTTGGACCCTCTAA+TGG 0.274812 3_2:+15914876 Msa0396970:CDS
CCACAAACTTGTCTTCTTCT+CGG 0.286283 3_2:+15914802 Msa0396970:CDS
TTGTCTTCTTCTCGGTTTCT+TGG 0.293903 3_2:+15914810 Msa0396970:CDS
TTCACATGCTGGTTCAAGTT+TGG 0.342748 3_2:+15914906 Msa0396970:CDS
TGAGGGAACATATGATAAAA+TGG 0.343607 3_2:+15916094 Msa0396970:CDS
TTGCAGTACTTCAACTATAT+GGG 0.353317 3_2:+15916059 Msa0396970:intron
GTAGTTGAAATGGCAAATAA+TGG 0.406753 3_2:-15916331 None:intergenic
GGATTTAGAATTTGAAATGA+TGG 0.407382 3_2:-15914757 None:intergenic
TGATAGAGATGATGTTGAAC+AGG 0.411754 3_2:+15914989 Msa0396970:CDS
AAACAGCTATGTAGTTGAAA+TGG 0.418113 3_2:-15916341 None:intergenic
CTAAATTTGGACCCTCTAAT+GGG 0.424402 3_2:+15914877 Msa0396970:CDS
TGTGAATCTTGACCCATTAG+AGG 0.437901 3_2:-15914889 None:intergenic
ATTAGAGGGTCCAAATTTAG+AGG 0.451507 3_2:-15914874 None:intergenic
ATGGGGATGCTTGCCGTTGA+GGG 0.451718 3_2:+15916077 Msa0396970:CDS
GGTATTAGAGTTAAGAGTGT+TGG 0.475847 3_2:+15914831 Msa0396970:CDS
TATCAAAATCATCACGAGAC+TGG 0.487504 3_2:-15914971 None:intergenic
CCGAGAAGAAGACAAGTTTG+TGG 0.501506 3_2:-15914802 None:intergenic
TAGAATTTGAAATGATGGGT+TGG 0.518105 3_2:-15914752 None:intergenic
TATGGGGATGCTTGCCGTTG+AGG 0.520774 3_2:+15916076 Msa0396970:CDS
AGGTGACTTGCCGAAAATTG+AGG 0.540400 3_2:+15916178 Msa0396970:CDS
ATGGGTCAAGATTCACATGC+TGG 0.548494 3_2:+15914895 Msa0396970:CDS
TGCAGTACTTCAACTATATG+GGG 0.549121 3_2:+15916060 Msa0396970:intron
TTTATCATATGTTCCCTCAA+CGG 0.549605 3_2:-15916090 None:intergenic
GATTTAGAATTTGAAATGAT+GGG 0.552146 3_2:-15914756 None:intergenic
ATTGAGGAACTCTTGAAAGC+AGG 0.563985 3_2:+15916194 Msa0396970:CDS
GGTGTTGATGCTGAAGGTGC+TGG 0.568178 3_2:+15914936 Msa0396970:CDS
CGCAGATGGACGGACAGCGT+TGG 0.577773 3_2:+15916238 Msa0396970:CDS
AACAACAGTAGAATGTCCAC+AGG 0.585605 3_2:-15916143 None:intergenic
CATGCTAATAATGAATCCAA+AGG 0.599508 3_2:-15916407 None:intergenic
ATGTAAAAGACGCAGATGGA+CGG 0.600271 3_2:+15916228 Msa0396970:CDS
TATGATGTAAAAGACGCAGA+TGG 0.606140 3_2:+15916224 Msa0396970:CDS
GTGAATCTTGACCCATTAGA+GGG 0.615376 3_2:-15914888 None:intergenic
CTGTTGTTAGCTGCATCAGA+AGG 0.617450 3_2:+15916158 Msa0396970:CDS
TTAGAGTTAAGAGTGTTGGA+TGG 0.638432 3_2:+15914835 Msa0396970:CDS
AACACAACACAACACAACAA+TGG 0.639555 3_2:+15914707 Msa0396970:exon
TATATCTATGATAGTCACAA+GGG 0.643596 3_2:-15916452 None:intergenic
GTATATCTATGATAGTCACA+AGG 0.656418 3_2:-15916453 None:intergenic
GGGAACATATGATAAAATGG+AGG 0.672409 3_2:+15916097 Msa0396970:CDS
GTGTTTGAAACTGACACATG+TGG 0.753712 3_2:+15916539 Msa0396970:three_prime_UTR
ACAACAGTAGAATGTCCACA+GGG 0.763235 3_2:-15916142 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATGATATATTTGTTT+TGG + chr3_2:15915089-15915108 Msa0396970:intron 10.0%
!!! TTTTAATGATATATTTGTTT+TGG + chr3_2:15915089-15915108 Msa0396970:intron 10.0%
!!! AACAAAGTTTATTTTTTGAA+AGG + chr3_2:15915023-15915042 Msa0396970:intron 15.0%
!!! TAAAATCTATTTGTTTTACT+AGG - chr3_2:15915253-15915272 None:intergenic 15.0%
!!! ATTTTTTAAAAAACCATTTG+AGG - chr3_2:15915395-15915414 None:intergenic 15.0%
!! ATAAAGATGAACATAAAATT+TGG + chr3_2:15915843-15915862 Msa0396970:intron 15.0%
!! TAAAGATGAACATAAAATTT+GGG + chr3_2:15915844-15915863 Msa0396970:intron 15.0%
!!! AACAAAGTTTATTTTTTGAA+AGG + chr3_2:15915023-15915042 Msa0396970:intron 15.0%
!!! TAAAATCTATTTGTTTTACT+AGG - chr3_2:15915253-15915272 None:intergenic 15.0%
!!! ATTTTTTAAAAAACCATTTG+AGG - chr3_2:15915395-15915414 None:intergenic 15.0%
!! ATAAAGATGAACATAAAATT+TGG + chr3_2:15915843-15915862 Msa0396970:intron 15.0%
!! TAAAGATGAACATAAAATTT+GGG + chr3_2:15915844-15915863 Msa0396970:intron 15.0%
!!! GATTTAGAATTTGAAATGAT+GGG - chr3_2:15914759-15914778 None:intergenic 20.0%
!!! TTTTATAACTGCATAGAAAT+TGG + chr3_2:15915752-15915771 Msa0396970:intron 20.0%
!! TTTATAACTGCATAGAAATT+GGG + chr3_2:15915753-15915772 Msa0396970:intron 20.0%
!!! ATTTTCCTGTTTAAAAATGA+AGG - chr3_2:15915939-15915958 None:intergenic 20.0%
!!! CTATGTTATTTCATATGATT+TGG + chr3_2:15916384-15916403 Msa0396970:three_prime_UTR 20.0%
!!! GATTTAGAATTTGAAATGAT+GGG - chr3_2:15914759-15914778 None:intergenic 20.0%
!!! TTTTATAACTGCATAGAAAT+TGG + chr3_2:15915752-15915771 Msa0396970:intron 20.0%
!! TTTATAACTGCATAGAAATT+GGG + chr3_2:15915753-15915772 Msa0396970:intron 20.0%
!!! ATTTTCCTGTTTAAAAATGA+AGG - chr3_2:15915939-15915958 None:intergenic 20.0%
!!! CTATGTTATTTCATATGATT+TGG + chr3_2:15916384-15916403 Msa0396970:three_prime_UTR 20.0%
!! GGATTTAGAATTTGAAATGA+TGG - chr3_2:15914760-15914779 None:intergenic 25.0%
! TATAAAATGCAGTCACAAAA+TGG - chr3_2:15915137-15915156 None:intergenic 25.0%
! TGTGAATGAAGCATAAAAAA+GGG - chr3_2:15915198-15915217 None:intergenic 25.0%
! ATGTGAATGAAGCATAAAAA+AGG - chr3_2:15915199-15915218 None:intergenic 25.0%
!! AGATTTTATCTATGAGAGAT+TGG + chr3_2:15915265-15915284 Msa0396970:intron 25.0%
! GGAAATTATCTCCTAATTTA+AGG - chr3_2:15915367-15915386 None:intergenic 25.0%
! TAAAAAACCATTTGAGGAAA+GGG - chr3_2:15915389-15915408 None:intergenic 25.0%
! TTAAAAAACCATTTGAGGAA+AGG - chr3_2:15915390-15915409 None:intergenic 25.0%
! TGAGTTTACAATATCTAGTA+AGG + chr3_2:15915507-15915526 Msa0396970:intron 25.0%
!!! TTTTTTAACTTGTGTAACCA+TGG + chr3_2:15915558-15915577 Msa0396970:intron 25.0%
! GAAAGTGAAAATGTAATTGA+AGG + chr3_2:15915775-15915794 Msa0396970:intron 25.0%
! TATATCTATGATAGTCACAA+GGG - chr3_2:15916455-15916474 None:intergenic 25.0%
!! GGATTTAGAATTTGAAATGA+TGG - chr3_2:15914760-15914779 None:intergenic 25.0%
! TATAAAATGCAGTCACAAAA+TGG - chr3_2:15915137-15915156 None:intergenic 25.0%
! TGTGAATGAAGCATAAAAAA+GGG - chr3_2:15915198-15915217 None:intergenic 25.0%
! ATGTGAATGAAGCATAAAAA+AGG - chr3_2:15915199-15915218 None:intergenic 25.0%
!! AGATTTTATCTATGAGAGAT+TGG + chr3_2:15915265-15915284 Msa0396970:intron 25.0%
! GGAAATTATCTCCTAATTTA+AGG - chr3_2:15915367-15915386 None:intergenic 25.0%
! TAAAAAACCATTTGAGGAAA+GGG - chr3_2:15915389-15915408 None:intergenic 25.0%
! TTAAAAAACCATTTGAGGAA+AGG - chr3_2:15915390-15915409 None:intergenic 25.0%
! TGAGTTTACAATATCTAGTA+AGG + chr3_2:15915507-15915526 Msa0396970:intron 25.0%
!!! TTTTTTAACTTGTGTAACCA+TGG + chr3_2:15915558-15915577 Msa0396970:intron 25.0%
! GAAAGTGAAAATGTAATTGA+AGG + chr3_2:15915775-15915794 Msa0396970:intron 25.0%
! TATATCTATGATAGTCACAA+GGG - chr3_2:15916455-15916474 None:intergenic 25.0%
!! TAGAATTTGAAATGATGGGT+TGG - chr3_2:15914755-15914774 None:intergenic 30.0%
AGAAACTTGTGAAGTGATTA+AGG - chr3_2:15914781-15914800 None:intergenic 30.0%
! TGGTTCAAGTTTGGTAAAAA+TGG + chr3_2:15914915-15914934 Msa0396970:CDS 30.0%
GTGAATGAAGCATAAAAAAG+GGG - chr3_2:15915197-15915216 None:intergenic 30.0%
ACACTTACTAATTGTCTCTA+AGG - chr3_2:15915342-15915361 None:intergenic 30.0%
AGTAAGTGTCACCTTAAATT+AGG + chr3_2:15915353-15915372 Msa0396970:intron 30.0%
AAAAAACCATTTGAGGAAAG+GGG - chr3_2:15915388-15915407 None:intergenic 30.0%
!! CATAAGTTTGCTTTTGATTC+TGG + chr3_2:15915446-15915465 Msa0396970:intron 30.0%
!! TCTGTCCTTCATTTTTAAAC+AGG + chr3_2:15915931-15915950 Msa0396970:intron 30.0%
TTCTCTTATAGACTGTCATT+AGG + chr3_2:15915960-15915979 Msa0396970:intron 30.0%
TTTGCAGTACTTCAACTATA+TGG + chr3_2:15916058-15916077 Msa0396970:intron 30.0%
TTGCAGTACTTCAACTATAT+GGG + chr3_2:15916059-15916078 Msa0396970:intron 30.0%
TTTATCATATGTTCCCTCAA+CGG - chr3_2:15916093-15916112 None:intergenic 30.0%
TGAGGGAACATATGATAAAA+TGG + chr3_2:15916094-15916113 Msa0396970:CDS 30.0%
! TTCAAGAGTTCCTCAATTTT+CGG - chr3_2:15916191-15916210 None:intergenic 30.0%
GTAGTTGAAATGGCAAATAA+TGG - chr3_2:15916334-15916353 None:intergenic 30.0%
AAACAGCTATGTAGTTGAAA+TGG - chr3_2:15916344-15916363 None:intergenic 30.0%
! ATTTCATATGATTTGGCCTT+TGG + chr3_2:15916391-15916410 Msa0396970:three_prime_UTR 30.0%
CATGCTAATAATGAATCCAA+AGG - chr3_2:15916410-15916429 None:intergenic 30.0%
GTATATCTATGATAGTCACA+AGG - chr3_2:15916456-15916475 None:intergenic 30.0%
!! TAGAATTTGAAATGATGGGT+TGG - chr3_2:15914755-15914774 None:intergenic 30.0%
AGAAACTTGTGAAGTGATTA+AGG - chr3_2:15914781-15914800 None:intergenic 30.0%
! TGGTTCAAGTTTGGTAAAAA+TGG + chr3_2:15914915-15914934 Msa0396970:CDS 30.0%
GTGAATGAAGCATAAAAAAG+GGG - chr3_2:15915197-15915216 None:intergenic 30.0%
ACACTTACTAATTGTCTCTA+AGG - chr3_2:15915342-15915361 None:intergenic 30.0%
AGTAAGTGTCACCTTAAATT+AGG + chr3_2:15915353-15915372 Msa0396970:intron 30.0%
AAAAAACCATTTGAGGAAAG+GGG - chr3_2:15915388-15915407 None:intergenic 30.0%
!! CATAAGTTTGCTTTTGATTC+TGG + chr3_2:15915446-15915465 Msa0396970:intron 30.0%
!! TCTGTCCTTCATTTTTAAAC+AGG + chr3_2:15915931-15915950 Msa0396970:intron 30.0%
TTCTCTTATAGACTGTCATT+AGG + chr3_2:15915960-15915979 Msa0396970:intron 30.0%
TTTGCAGTACTTCAACTATA+TGG + chr3_2:15916058-15916077 Msa0396970:intron 30.0%
TTGCAGTACTTCAACTATAT+GGG + chr3_2:15916059-15916078 Msa0396970:intron 30.0%
TTTATCATATGTTCCCTCAA+CGG - chr3_2:15916093-15916112 None:intergenic 30.0%
TGAGGGAACATATGATAAAA+TGG + chr3_2:15916094-15916113 Msa0396970:CDS 30.0%
! TTCAAGAGTTCCTCAATTTT+CGG - chr3_2:15916191-15916210 None:intergenic 30.0%
GTAGTTGAAATGGCAAATAA+TGG - chr3_2:15916334-15916353 None:intergenic 30.0%
AAACAGCTATGTAGTTGAAA+TGG - chr3_2:15916344-15916363 None:intergenic 30.0%
! ATTTCATATGATTTGGCCTT+TGG + chr3_2:15916391-15916410 Msa0396970:three_prime_UTR 30.0%
CATGCTAATAATGAATCCAA+AGG - chr3_2:15916410-15916429 None:intergenic 30.0%
GTATATCTATGATAGTCACA+AGG - chr3_2:15916456-15916475 None:intergenic 30.0%
AACACAACACAACACAACAA+TGG + chr3_2:15914707-15914726 Msa0396970:exon 35.0%
! GGTATTAGAGTTAAGAGTGT+TGG + chr3_2:15914831-15914850 Msa0396970:CDS 35.0%
!! TTAGAGTTAAGAGTGTTGGA+TGG + chr3_2:15914835-15914854 Msa0396970:CDS 35.0%
TCAAGCTTCACCTCTAAATT+TGG + chr3_2:15914864-15914883 Msa0396970:CDS 35.0%
ATTAGAGGGTCCAAATTTAG+AGG - chr3_2:15914877-15914896 None:intergenic 35.0%
TCTAAATTTGGACCCTCTAA+TGG + chr3_2:15914876-15914895 Msa0396970:CDS 35.0%
CTAAATTTGGACCCTCTAAT+GGG + chr3_2:15914877-15914896 Msa0396970:CDS 35.0%
!! AAAAATGGTGTTGATGCTGA+AGG + chr3_2:15914930-15914949 Msa0396970:CDS 35.0%
TATCAAAATCATCACGAGAC+TGG - chr3_2:15914974-15914993 None:intergenic 35.0%
TGATAGAGATGATGTTGAAC+AGG + chr3_2:15914989-15915008 Msa0396970:CDS 35.0%
TAATTTCCCCTTTCCTCAAA+TGG + chr3_2:15915379-15915398 Msa0396970:intron 35.0%
TGAGAATGATGTTAGTTGCT+AGG + chr3_2:15915532-15915551 Msa0396970:intron 35.0%
GGAGTGTGCTTAAGTATTAA+TGG + chr3_2:15915587-15915606 Msa0396970:intron 35.0%
!!! CTCAGTGATGATTTTGAGTT+GGG - chr3_2:15915911-15915930 None:intergenic 35.0%
!! ACTCAGTGATGATTTTGAGT+TGG - chr3_2:15915912-15915931 None:intergenic 35.0%
TGCAGTACTTCAACTATATG+GGG + chr3_2:15916060-15916079 Msa0396970:intron 35.0%
GGGAACATATGATAAAATGG+AGG + chr3_2:15916097-15916116 Msa0396970:CDS 35.0%
TATGATGTAAAAGACGCAGA+TGG + chr3_2:15916224-15916243 Msa0396970:CDS 35.0%
AACACAACACAACACAACAA+TGG + chr3_2:15914707-15914726 Msa0396970:exon 35.0%
! GGTATTAGAGTTAAGAGTGT+TGG + chr3_2:15914831-15914850 Msa0396970:CDS 35.0%
!! TTAGAGTTAAGAGTGTTGGA+TGG + chr3_2:15914835-15914854 Msa0396970:CDS 35.0%
TCAAGCTTCACCTCTAAATT+TGG + chr3_2:15914864-15914883 Msa0396970:CDS 35.0%
ATTAGAGGGTCCAAATTTAG+AGG - chr3_2:15914877-15914896 None:intergenic 35.0%
TCTAAATTTGGACCCTCTAA+TGG + chr3_2:15914876-15914895 Msa0396970:CDS 35.0%
CTAAATTTGGACCCTCTAAT+GGG + chr3_2:15914877-15914896 Msa0396970:CDS 35.0%
!! AAAAATGGTGTTGATGCTGA+AGG + chr3_2:15914930-15914949 Msa0396970:CDS 35.0%
TATCAAAATCATCACGAGAC+TGG - chr3_2:15914974-15914993 None:intergenic 35.0%
TGATAGAGATGATGTTGAAC+AGG + chr3_2:15914989-15915008 Msa0396970:CDS 35.0%
TAATTTCCCCTTTCCTCAAA+TGG + chr3_2:15915379-15915398 Msa0396970:intron 35.0%
TGAGAATGATGTTAGTTGCT+AGG + chr3_2:15915532-15915551 Msa0396970:intron 35.0%
GGAGTGTGCTTAAGTATTAA+TGG + chr3_2:15915587-15915606 Msa0396970:intron 35.0%
!!! CTCAGTGATGATTTTGAGTT+GGG - chr3_2:15915911-15915930 None:intergenic 35.0%
!! ACTCAGTGATGATTTTGAGT+TGG - chr3_2:15915912-15915931 None:intergenic 35.0%
TGCAGTACTTCAACTATATG+GGG + chr3_2:15916060-15916079 Msa0396970:intron 35.0%
GGGAACATATGATAAAATGG+AGG + chr3_2:15916097-15916116 Msa0396970:CDS 35.0%
TATGATGTAAAAGACGCAGA+TGG + chr3_2:15916224-15916243 Msa0396970:CDS 35.0%
CCACAAACTTGTCTTCTTCT+CGG + chr3_2:15914802-15914821 Msa0396970:CDS 40.0%
TTGTCTTCTTCTCGGTTTCT+TGG + chr3_2:15914810-15914829 Msa0396970:CDS 40.0%
GTGAATCTTGACCCATTAGA+GGG - chr3_2:15914891-15914910 None:intergenic 40.0%
TGTGAATCTTGACCCATTAG+AGG - chr3_2:15914892-15914911 None:intergenic 40.0%
!! TTCACATGCTGGTTCAAGTT+TGG + chr3_2:15914906-15914925 Msa0396970:CDS 40.0%
AAAAAAGGGGACATGCAACA+AGG - chr3_2:15915184-15915203 None:intergenic 40.0%
! TCTATGAGAGATTGGTTCAG+TGG + chr3_2:15915273-15915292 Msa0396970:intron 40.0%
TTGGTTCAGTGGTAAGAGTT+TGG + chr3_2:15915284-15915303 Msa0396970:intron 40.0%
! GGCTTTGTAACCTTAAGAGA+CGG + chr3_2:15915305-15915324 Msa0396970:intron 40.0%
GATTCAAACTCCGTCTCTTA+AGG - chr3_2:15915318-15915337 None:intergenic 40.0%
! TAACTTGTGTAACCATGGTC+AGG + chr3_2:15915563-15915582 Msa0396970:intron 40.0%
! TAATTGAAGGAAAGCGCGAA+TGG + chr3_2:15915788-15915807 Msa0396970:intron 40.0%
AAGCCAAAAAATTCACCCTG+TGG + chr3_2:15916127-15916146 Msa0396970:CDS 40.0%
!!! TGTCCACAGGGTGAATTTTT+TGG - chr3_2:15916133-15916152 None:intergenic 40.0%
ACAACAGTAGAATGTCCACA+GGG - chr3_2:15916145-15916164 None:intergenic 40.0%
AACAACAGTAGAATGTCCAC+AGG - chr3_2:15916146-15916165 None:intergenic 40.0%
ATTGAGGAACTCTTGAAAGC+AGG + chr3_2:15916194-15916213 Msa0396970:CDS 40.0%
ATGTAAAAGACGCAGATGGA+CGG + chr3_2:15916228-15916247 Msa0396970:CDS 40.0%
!! TATGCAGCACTGACACTTAA+AGG + chr3_2:15916491-15916510 Msa0396970:three_prime_UTR 40.0%
! GTGTTTGAAACTGACACATG+TGG + chr3_2:15916539-15916558 Msa0396970:three_prime_UTR 40.0%
CCACAAACTTGTCTTCTTCT+CGG + chr3_2:15914802-15914821 Msa0396970:CDS 40.0%
TTGTCTTCTTCTCGGTTTCT+TGG + chr3_2:15914810-15914829 Msa0396970:CDS 40.0%
GTGAATCTTGACCCATTAGA+GGG - chr3_2:15914891-15914910 None:intergenic 40.0%
TGTGAATCTTGACCCATTAG+AGG - chr3_2:15914892-15914911 None:intergenic 40.0%
!! TTCACATGCTGGTTCAAGTT+TGG + chr3_2:15914906-15914925 Msa0396970:CDS 40.0%
AAAAAAGGGGACATGCAACA+AGG - chr3_2:15915184-15915203 None:intergenic 40.0%
! TCTATGAGAGATTGGTTCAG+TGG + chr3_2:15915273-15915292 Msa0396970:intron 40.0%
TTGGTTCAGTGGTAAGAGTT+TGG + chr3_2:15915284-15915303 Msa0396970:intron 40.0%
! GGCTTTGTAACCTTAAGAGA+CGG + chr3_2:15915305-15915324 Msa0396970:intron 40.0%
GATTCAAACTCCGTCTCTTA+AGG - chr3_2:15915318-15915337 None:intergenic 40.0%
! TAACTTGTGTAACCATGGTC+AGG + chr3_2:15915563-15915582 Msa0396970:intron 40.0%
! TAATTGAAGGAAAGCGCGAA+TGG + chr3_2:15915788-15915807 Msa0396970:intron 40.0%
AAGCCAAAAAATTCACCCTG+TGG + chr3_2:15916127-15916146 Msa0396970:CDS 40.0%
!!! TGTCCACAGGGTGAATTTTT+TGG - chr3_2:15916133-15916152 None:intergenic 40.0%
ACAACAGTAGAATGTCCACA+GGG - chr3_2:15916145-15916164 None:intergenic 40.0%
AACAACAGTAGAATGTCCAC+AGG - chr3_2:15916146-15916165 None:intergenic 40.0%
ATTGAGGAACTCTTGAAAGC+AGG + chr3_2:15916194-15916213 Msa0396970:CDS 40.0%
ATGTAAAAGACGCAGATGGA+CGG + chr3_2:15916228-15916247 Msa0396970:CDS 40.0%
!! TATGCAGCACTGACACTTAA+AGG + chr3_2:15916491-15916510 Msa0396970:three_prime_UTR 40.0%
! GTGTTTGAAACTGACACATG+TGG + chr3_2:15916539-15916558 Msa0396970:three_prime_UTR 40.0%
CCGAGAAGAAGACAAGTTTG+TGG - chr3_2:15914805-15914824 None:intergenic 45.0%
ATGGGTCAAGATTCACATGC+TGG + chr3_2:15914895-15914914 Msa0396970:CDS 45.0%
!! GCTGAAGGTGCTGGTATTTA+TGG + chr3_2:15914945-15914964 Msa0396970:CDS 45.0%
CAAAGAGAATGTGCATGCGA+TGG + chr3_2:15916008-15916027 Msa0396970:intron 45.0%
CTGTTGTTAGCTGCATCAGA+AGG + chr3_2:15916158-15916177 Msa0396970:CDS 45.0%
! AGGTGACTTGCCGAAAATTG+AGG + chr3_2:15916178-15916197 Msa0396970:CDS 45.0%
CCGAGAAGAAGACAAGTTTG+TGG - chr3_2:15914805-15914824 None:intergenic 45.0%
ATGGGTCAAGATTCACATGC+TGG + chr3_2:15914895-15914914 Msa0396970:CDS 45.0%
!! GCTGAAGGTGCTGGTATTTA+TGG + chr3_2:15914945-15914964 Msa0396970:CDS 45.0%
CAAAGAGAATGTGCATGCGA+TGG + chr3_2:15916008-15916027 Msa0396970:intron 45.0%
CTGTTGTTAGCTGCATCAGA+AGG + chr3_2:15916158-15916177 Msa0396970:CDS 45.0%
! AGGTGACTTGCCGAAAATTG+AGG + chr3_2:15916178-15916197 Msa0396970:CDS 45.0%
CTTGTGTAACCATGGTCAGG+AGG + chr3_2:15915566-15915585 Msa0396970:intron 50.0%
CTTGTGTAACCATGGTCAGG+AGG + chr3_2:15915566-15915585 Msa0396970:intron 50.0%
!! GGTGTTGATGCTGAAGGTGC+TGG + chr3_2:15914936-15914955 Msa0396970:CDS 55.0%
AAGCACACTCCTCCTGACCA+TGG - chr3_2:15915578-15915597 None:intergenic 55.0%
TATGGGGATGCTTGCCGTTG+AGG + chr3_2:15916076-15916095 Msa0396970:CDS 55.0%
ATGGGGATGCTTGCCGTTGA+GGG + chr3_2:15916077-15916096 Msa0396970:CDS 55.0%
!! GGTGTTGATGCTGAAGGTGC+TGG + chr3_2:15914936-15914955 Msa0396970:CDS 55.0%
AAGCACACTCCTCCTGACCA+TGG - chr3_2:15915578-15915597 None:intergenic 55.0%
TATGGGGATGCTTGCCGTTG+AGG + chr3_2:15916076-15916095 Msa0396970:CDS 55.0%
ATGGGGATGCTTGCCGTTGA+GGG + chr3_2:15916077-15916096 Msa0396970:CDS 55.0%
CGCAGATGGACGGACAGCGT+TGG + chr3_2:15916238-15916257 Msa0396970:CDS 65.0%
CGCAGATGGACGGACAGCGT+TGG + chr3_2:15916238-15916257 Msa0396970:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 15914660 15916579 15914660 ID=Msa0396970;Name=Msa0396970
chr3_2 mRNA 15914660 15916579 15914660 ID=Msa0396970-mRNA-1;Parent=Msa0396970;Name=Msa0396970-mRNA-1;_AED=0.02;_eAED=0.02;_QI=66|1|1|1|1|1|2|260|179
chr3_2 exon 15914660 15915010 15914660 ID=Msa0396970-mRNA-1:exon:3564;Parent=Msa0396970-mRNA-1
chr3_2 exon 15916065 15916579 15916065 ID=Msa0396970-mRNA-1:exon:3565;Parent=Msa0396970-mRNA-1
chr3_2 five_prime_UTR 15914660 15914725 15914660 ID=Msa0396970-mRNA-1:five_prime_utr;Parent=Msa0396970-mRNA-1
chr3_2 CDS 15914726 15915010 15914726 ID=Msa0396970-mRNA-1:cds;Parent=Msa0396970-mRNA-1
chr3_2 CDS 15916065 15916319 15916065 ID=Msa0396970-mRNA-1:cds;Parent=Msa0396970-mRNA-1
chr3_2 three_prime_UTR 15916320 15916579 15916320 ID=Msa0396970-mRNA-1:three_prime_utr;Parent=Msa0396970-mRNA-1
Gene Sequence

>Msa0396970

ATGGCTTCAATCACATGCATAACTCACCAACCCATCATTTCAAATTCTAAATCCTTAATCACTTCACAAGTTTCTTCCACAAACTTGTCTTCTTCTCGGTTTCTTGGTATTAGAGTTAAGAGTGTTGGATGGTCAAGCTCAAGCTTCACCTCTAAATTTGGACCCTCTAATGGGTCAAGATTCACATGCTGGTTCAAGTTTGGTAAAAATGGTGTTGATGCTGAAGGTGCTGGTATTTATGGTAGCCAGTCTCGTGATGATTTTGATAGAGATGATGTTGAACAGTACTTCAACTATATGGGGATGCTTGCCGTTGAGGGAACATATGATAAAATGGAGGCTCTTCTAAGCCAAAAAATTCACCCTGTGGACATTCTACTGTTGTTAGCTGCATCAGAAGGTGACTTGCCGAAAATTGAGGAACTCTTGAAAGCAGGAGCAAAATATGATGTAAAAGACGCAGATGGACGGACAGCGTTGGATAGAGCTAATGCTGAAGTTAAAGATTTCATTCTTAATTTTTCAGTGCAGAGAGCATGA

Protein sequence

>Msa0396970

MASITCITHQPIISNSKSLITSQVSSTNLSSSRFLGIRVKSVGWSSSSFTSKFGPSNGSRFTCWFKFGKNGVDAEGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQKIHPVDILLLLAASEGDLPKIEELLKAGAKYDVKDADGRTALDRANAEVKDFILNFSVQRA*