AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0975910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0975910 MtrunA17_Chr6g0454691 84.106 151 11 2 1 141 1 148 3.05e-87 251
Msa0975910 MtrunA17_Chr6g0454651 93.103 87 6 0 55 141 1 87 3.05e-55 167
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0975910 AT5G39210.1 50.725 138 62 2 8 141 21 156 2.99e-41 135

Find 37 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATAACTTTGGTTTCTTAT+TGG 0.236348 6_4:+9699509 Msa0975910:five_prime_UTR
CATTCATGTTTATGAAGTTT+TGG 0.260089 6_4:-9699533 None:intergenic
TGAAAGAGTGGCTCACAAAT+TGG 0.283330 6_4:+9701301 Msa0975910:CDS
AAGAACTAAAACATTGAATT+AGG 0.310142 6_4:-9700156 None:intergenic
CAAACATGTTATTTACAGTT+TGG 0.325891 6_4:+9701560 Msa0975910:three_prime_UTR
GGTGATGTTATATGTATTGC+TGG 0.342148 6_4:-9700130 None:intergenic
AATTCATACGAGCTACTATA+TGG 0.345183 6_4:+9699485 Msa0975910:five_prime_UTR
GGATGAGAGGTTTGTGTCAG+AGG 0.390149 6_4:+9701260 Msa0975910:CDS
CTTGAAATTGATGGAGAAGT+TGG 0.397574 6_4:+9701408 Msa0975910:CDS
ATCAATTTCAAGTTCACAAA+AGG 0.404929 6_4:-9701397 None:intergenic
TACTATATGGATGATAACTT+TGG 0.434572 6_4:+9699498 Msa0975910:five_prime_UTR
AAATAGTTTAATTGAACACT+TGG 0.452882 6_4:+9701585 Msa0975910:three_prime_UTR
GTTTCATATCTTGCTAGATC+AGG 0.459128 6_4:-9701342 None:intergenic
TCAGTGGTATGAAGTTCGTT+TGG 0.464080 6_4:+9701437 Msa0975910:CDS
CAACTTGAGGCAGTCTATGA+TGG 0.478137 6_4:-9700183 None:intergenic
AATGTTCTAAATAACACAAA+TGG 0.505543 6_4:-9701517 None:intergenic
GTATTGCTGGATTCTGCATA+TGG 0.507197 6_4:-9700117 None:intergenic
ACAAACCTCTCATCCTTCCC+TGG 0.513237 6_4:-9701252 None:intergenic
GAAAGAAACAGCATCATCAA+TGG 0.526687 6_4:-9701364 None:intergenic
TGAAAGATACTTTGAAAGAG+TGG 0.529707 6_4:+9701289 Msa0975910:CDS
CTAAAACATTGAATTAGGCC+TGG 0.534335 6_4:-9700151 None:intergenic
TCAGGAGGAAGAGTCTTGCC+AGG 0.535490 6_4:-9701324 None:intergenic
GAGTGGCTCACAAATTGGCC+TGG 0.539314 6_4:+9701306 Msa0975910:CDS
CAACTATGACAATCACAAGT+TGG 0.543984 6_4:-9701489 None:intergenic
TCATATCTTGCTAGATCAGG+AGG 0.578859 6_4:-9701339 None:intergenic
ACTTGTGATTGTCATAGTTG+AGG 0.585919 6_4:+9701492 Msa0975910:three_prime_UTR
TAGAACCAGGGAAGGATGAG+AGG 0.587726 6_4:+9701247 Msa0975910:CDS
TTGTGTCAGTTACAAGAGAA+CGG 0.594667 6_4:-9701540 None:intergenic
AATTGATGGAGAAGTTGGAT+CGG 0.615121 6_4:+9701413 Msa0975910:CDS
ACTTATGTACTATTAGAACC+AGG 0.616078 6_4:+9701234 Msa0975910:CDS
TGTACTATTAGAACCAGGGA+AGG 0.630431 6_4:+9701239 Msa0975910:CDS
GAGAAGTTGGATCGGTTCAG+TGG 0.633875 6_4:+9701421 Msa0975910:CDS
CACAAAATAATTAATAACCA+TGG 0.640960 6_4:+9699564 Msa0975910:exon
GCAATACATATAACATCACC+AGG 0.652099 6_4:+9700133 Msa0975910:CDS
CTTATGTACTATTAGAACCA+GGG 0.664769 6_4:+9701235 Msa0975910:CDS
AGGCTGCAAAACAACTACCA+TGG 0.682488 6_4:-9699581 None:intergenic
ACTCTAACATTGAAACCATG+AGG 0.705525 6_4:-9699601 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTCTTATATTTAGTTTTA+AGG + chr6_4:9700300-9700319 Msa0975910:intron 10.0%
!!! ATTTCTTATATTTAGTTTTA+AGG + chr6_4:9700300-9700319 Msa0975910:intron 10.0%
!!! ATACATTACATTATTTTTAG+AGG + chr6_4:9699715-9699734 Msa0975910:intron 15.0%
!!! TACATTACATTATTTTTAGA+GGG + chr6_4:9699716-9699735 Msa0975910:intron 15.0%
!! AATAAATAAATAAATCAACC+AGG + chr6_4:9700431-9700450 Msa0975910:intron 15.0%
!!! ATACATTACATTATTTTTAG+AGG + chr6_4:9699715-9699734 Msa0975910:intron 15.0%
!!! TACATTACATTATTTTTAGA+GGG + chr6_4:9699716-9699735 Msa0975910:intron 15.0%
!! AATAAATAAATAAATCAACC+AGG + chr6_4:9700431-9700450 Msa0975910:intron 15.0%
!! CACAAAATAATTAATAACCA+TGG + chr6_4:9699564-9699583 Msa0975910:exon 20.0%
!! TATTATCAATACTAGTAAGT+AGG + chr6_4:9699762-9699781 Msa0975910:intron 20.0%
!! ATTATCAATACTAGTAAGTA+GGG + chr6_4:9699763-9699782 Msa0975910:intron 20.0%
!! AAGAACTAAAACATTGAATT+AGG - chr6_4:9700159-9700178 None:intergenic 20.0%
!!! GTTTTTTGAAAACATACTAT+AGG - chr6_4:9700270-9700289 None:intergenic 20.0%
!!! TATTCTTGTGATTAGTTAAT+AGG + chr6_4:9700461-9700480 Msa0975910:intron 20.0%
!!! ATTCTTGTGATTAGTTAATA+GGG + chr6_4:9700462-9700481 Msa0975910:intron 20.0%
!! TTAGTCAAAACTAATTTACT+CGG + chr6_4:9700828-9700847 Msa0975910:intron 20.0%
!!! AATGTTCTAAATAACACAAA+TGG - chr6_4:9701520-9701539 None:intergenic 20.0%
!! AAATAGTTTAATTGAACACT+TGG + chr6_4:9701585-9701604 Msa0975910:three_prime_UTR 20.0%
!! CACAAAATAATTAATAACCA+TGG + chr6_4:9699564-9699583 Msa0975910:exon 20.0%
!! TATTATCAATACTAGTAAGT+AGG + chr6_4:9699762-9699781 Msa0975910:intron 20.0%
!! ATTATCAATACTAGTAAGTA+GGG + chr6_4:9699763-9699782 Msa0975910:intron 20.0%
!! AAGAACTAAAACATTGAATT+AGG - chr6_4:9700159-9700178 None:intergenic 20.0%
!!! GTTTTTTGAAAACATACTAT+AGG - chr6_4:9700270-9700289 None:intergenic 20.0%
!!! TATTCTTGTGATTAGTTAAT+AGG + chr6_4:9700461-9700480 Msa0975910:intron 20.0%
!!! ATTCTTGTGATTAGTTAATA+GGG + chr6_4:9700462-9700481 Msa0975910:intron 20.0%
!! TTAGTCAAAACTAATTTACT+CGG + chr6_4:9700828-9700847 Msa0975910:intron 20.0%
!!! AATGTTCTAAATAACACAAA+TGG - chr6_4:9701520-9701539 None:intergenic 20.0%
!! AAATAGTTTAATTGAACACT+TGG + chr6_4:9701585-9701604 Msa0975910:three_prime_UTR 20.0%
! TACTATATGGATGATAACTT+TGG + chr6_4:9699498-9699517 Msa0975910:five_prime_UTR 25.0%
!! TGATAACTTTGGTTTCTTAT+TGG + chr6_4:9699509-9699528 Msa0975910:five_prime_UTR 25.0%
!! CATTCATGTTTATGAAGTTT+TGG - chr6_4:9699536-9699555 None:intergenic 25.0%
! CATTTGTATAATTCCTTAGA+TGG + chr6_4:9699790-9699809 Msa0975910:intron 25.0%
! TGAATGATTGTAAAATAGAG+TGG + chr6_4:9699888-9699907 Msa0975910:intron 25.0%
! TAAACAATTGACCATAATCT+TGG + chr6_4:9699992-9700011 Msa0975910:intron 25.0%
! AAACATTCATACCAAGATTA+TGG - chr6_4:9700006-9700025 None:intergenic 25.0%
!!! GTTTTGACTAATCATATGTT+TGG - chr6_4:9700819-9700838 None:intergenic 25.0%
!!! ATCAATTTCAAGTTCACAAA+AGG - chr6_4:9701400-9701419 None:intergenic 25.0%
!! TTTTGTGAACTTGAAATTGA+TGG + chr6_4:9701399-9701418 Msa0975910:CDS 25.0%
!! CAAACATGTTATTTACAGTT+TGG + chr6_4:9701560-9701579 Msa0975910:three_prime_UTR 25.0%
! TACTATATGGATGATAACTT+TGG + chr6_4:9699498-9699517 Msa0975910:five_prime_UTR 25.0%
!! TGATAACTTTGGTTTCTTAT+TGG + chr6_4:9699509-9699528 Msa0975910:five_prime_UTR 25.0%
!! CATTCATGTTTATGAAGTTT+TGG - chr6_4:9699536-9699555 None:intergenic 25.0%
! CATTTGTATAATTCCTTAGA+TGG + chr6_4:9699790-9699809 Msa0975910:intron 25.0%
! TGAATGATTGTAAAATAGAG+TGG + chr6_4:9699888-9699907 Msa0975910:intron 25.0%
! TAAACAATTGACCATAATCT+TGG + chr6_4:9699992-9700011 Msa0975910:intron 25.0%
! AAACATTCATACCAAGATTA+TGG - chr6_4:9700006-9700025 None:intergenic 25.0%
!!! GTTTTGACTAATCATATGTT+TGG - chr6_4:9700819-9700838 None:intergenic 25.0%
!!! ATCAATTTCAAGTTCACAAA+AGG - chr6_4:9701400-9701419 None:intergenic 25.0%
!! TTTTGTGAACTTGAAATTGA+TGG + chr6_4:9701399-9701418 Msa0975910:CDS 25.0%
!! CAAACATGTTATTTACAGTT+TGG + chr6_4:9701560-9701579 Msa0975910:three_prime_UTR 25.0%
AATTCATACGAGCTACTATA+TGG + chr6_4:9699485-9699504 Msa0975910:five_prime_UTR 30.0%
CAGAAAATTCCTATATGGTA+AGG - chr6_4:9699825-9699844 None:intergenic 30.0%
GTTTCTTTCCATCAAGTTAA+GGG - chr6_4:9699848-9699867 None:intergenic 30.0%
TGTTTCTTTCCATCAAGTTA+AGG - chr6_4:9699849-9699868 None:intergenic 30.0%
! GATTAGTTAATAGGGTTCTT+TGG + chr6_4:9700470-9700489 Msa0975910:intron 30.0%
!! CTTAACTTTCTCTGAAATCA+GGG - chr6_4:9700511-9700530 None:intergenic 30.0%
TGTGTGTTTGGAAAAAAGTT+TGG - chr6_4:9700658-9700677 None:intergenic 30.0%
TGCTCCTAAGAAATGTTATA+TGG + chr6_4:9700856-9700875 Msa0975910:intron 30.0%
AGGTTAAATGTGATAGTAAC+AGG + chr6_4:9700880-9700899 Msa0975910:intron 30.0%
CAGTCGAGATTCAAATATTA+GGG - chr6_4:9700966-9700985 None:intergenic 30.0%
CTAATATTTGAATCTCGACT+GGG + chr6_4:9700965-9700984 Msa0975910:intron 30.0%
ACTTATGTACTATTAGAACC+AGG + chr6_4:9701234-9701253 Msa0975910:CDS 30.0%
CTTATGTACTATTAGAACCA+GGG + chr6_4:9701235-9701254 Msa0975910:CDS 30.0%
! TGAAAGATACTTTGAAAGAG+TGG + chr6_4:9701289-9701308 Msa0975910:CDS 30.0%
AATTCATACGAGCTACTATA+TGG + chr6_4:9699485-9699504 Msa0975910:five_prime_UTR 30.0%
CAGAAAATTCCTATATGGTA+AGG - chr6_4:9699825-9699844 None:intergenic 30.0%
GTTTCTTTCCATCAAGTTAA+GGG - chr6_4:9699848-9699867 None:intergenic 30.0%
TGTTTCTTTCCATCAAGTTA+AGG - chr6_4:9699849-9699868 None:intergenic 30.0%
! GATTAGTTAATAGGGTTCTT+TGG + chr6_4:9700470-9700489 Msa0975910:intron 30.0%
!! CTTAACTTTCTCTGAAATCA+GGG - chr6_4:9700511-9700530 None:intergenic 30.0%
TGTGTGTTTGGAAAAAAGTT+TGG - chr6_4:9700658-9700677 None:intergenic 30.0%
TGCTCCTAAGAAATGTTATA+TGG + chr6_4:9700856-9700875 Msa0975910:intron 30.0%
AGGTTAAATGTGATAGTAAC+AGG + chr6_4:9700880-9700899 Msa0975910:intron 30.0%
CAGTCGAGATTCAAATATTA+GGG - chr6_4:9700966-9700985 None:intergenic 30.0%
CTAATATTTGAATCTCGACT+GGG + chr6_4:9700965-9700984 Msa0975910:intron 30.0%
ACTTATGTACTATTAGAACC+AGG + chr6_4:9701234-9701253 Msa0975910:CDS 30.0%
CTTATGTACTATTAGAACCA+GGG + chr6_4:9701235-9701254 Msa0975910:CDS 30.0%
! TGAAAGATACTTTGAAAGAG+TGG + chr6_4:9701289-9701308 Msa0975910:CDS 30.0%
ACTCTAACATTGAAACCATG+AGG - chr6_4:9699604-9699623 None:intergenic 35.0%
!! CTCCACTGTAAGCTATTTTA+TGG + chr6_4:9699631-9699650 Msa0975910:intron 35.0%
GCTCAAAAGCTGAAAAGATA+AGG - chr6_4:9699657-9699676 None:intergenic 35.0%
! CCTATATGGTAAGGCAATTT+TGG - chr6_4:9699816-9699835 None:intergenic 35.0%
CCAAAATTGCCTTACCATAT+AGG + chr6_4:9699813-9699832 Msa0975910:intron 35.0%
AAGGGCAGAAAATTCCTATA+TGG - chr6_4:9699830-9699849 None:intergenic 35.0%
!! ATTTTCTGCCCTTAACTTGA+TGG + chr6_4:9699837-9699856 Msa0975910:intron 35.0%
AGCCATAACATTGAGGTTAT+TGG + chr6_4:9699952-9699971 Msa0975910:intron 35.0%
CTCCAATAACCTCAATGTTA+TGG - chr6_4:9699957-9699976 None:intergenic 35.0%
GGTGATGTTATATGTATTGC+TGG - chr6_4:9700133-9700152 None:intergenic 35.0%
GCAATACATATAACATCACC+AGG + chr6_4:9700133-9700152 Msa0975910:CDS 35.0%
CTAAAACATTGAATTAGGCC+TGG - chr6_4:9700154-9700173 None:intergenic 35.0%
CGATTGCAGAAGTAAAACAA+AGG + chr6_4:9700210-9700229 Msa0975910:intron 35.0%
AGATTTCAGAAGATACTGCA+GGG - chr6_4:9700242-9700261 None:intergenic 35.0%
AAATAAATCAACCAGGCTCT+TGG + chr6_4:9700438-9700457 Msa0975910:intron 35.0%
!! GCTTAACTTTCTCTGAAATC+AGG - chr6_4:9700512-9700531 None:intergenic 35.0%
GAGAAAGTTAAGCATGTGTT+TGG + chr6_4:9700519-9700538 Msa0975910:intron 35.0%
AGTTAAGCATGTGTTTGGTA+TGG + chr6_4:9700524-9700543 Msa0975910:intron 35.0%
AATGCACTTTCACTGTGATT+TGG - chr6_4:9700616-9700635 None:intergenic 35.0%
! AAATCACAGTGAAAGTGCAT+TGG + chr6_4:9700615-9700634 Msa0975910:intron 35.0%
! AATCACAGTGAAAGTGCATT+GGG + chr6_4:9700616-9700635 Msa0975910:intron 35.0%
AAACATGCTAAGTGTGTGTT+TGG - chr6_4:9700670-9700689 None:intergenic 35.0%
AAACACACACTTAGCATGTT+TGG + chr6_4:9700669-9700688 Msa0975910:intron 35.0%
TTGACGTGGAAGATTTGATT+TGG + chr6_4:9700731-9700750 Msa0975910:intron 35.0%
! TTGGAGCTTTGATGAATTTG+CGG + chr6_4:9700750-9700769 Msa0975910:intron 35.0%
CCTGCCATATAACATTTCTT+AGG - chr6_4:9700863-9700882 None:intergenic 35.0%
CCTAAGAAATGTTATATGGC+AGG + chr6_4:9700860-9700879 Msa0975910:intron 35.0%
CCAGTCGAGATTCAAATATT+AGG - chr6_4:9700967-9700986 None:intergenic 35.0%
CCTAATATTTGAATCTCGAC+TGG + chr6_4:9700964-9700983 Msa0975910:intron 35.0%
TATCCAACTGTGCTTCAAAT+AGG + chr6_4:9701006-9701025 Msa0975910:intron 35.0%
! AATCCTATTTGAAGCACAGT+TGG - chr6_4:9701012-9701031 None:intergenic 35.0%
! CACTGAACTTTGTTTGTAAC+AGG + chr6_4:9701170-9701189 Msa0975910:intron 35.0%
! TGTAACAGGTTTTTGCAATG+AGG + chr6_4:9701184-9701203 Msa0975910:intron 35.0%
! TTTTTGCAATGAGGAGAAGA+AGG + chr6_4:9701193-9701212 Msa0975910:CDS 35.0%
! TTTTGCAATGAGGAGAAGAA+GGG + chr6_4:9701194-9701213 Msa0975910:CDS 35.0%
GTTTCATATCTTGCTAGATC+AGG - chr6_4:9701345-9701364 None:intergenic 35.0%
GAAAGAAACAGCATCATCAA+TGG - chr6_4:9701367-9701386 None:intergenic 35.0%
CTTGAAATTGATGGAGAAGT+TGG + chr6_4:9701408-9701427 Msa0975910:CDS 35.0%
AATTGATGGAGAAGTTGGAT+CGG + chr6_4:9701413-9701432 Msa0975910:CDS 35.0%
CAACTATGACAATCACAAGT+TGG - chr6_4:9701492-9701511 None:intergenic 35.0%
ACTTGTGATTGTCATAGTTG+AGG + chr6_4:9701492-9701511 Msa0975910:three_prime_UTR 35.0%
TTGTGTCAGTTACAAGAGAA+CGG - chr6_4:9701543-9701562 None:intergenic 35.0%
ACTCTAACATTGAAACCATG+AGG - chr6_4:9699604-9699623 None:intergenic 35.0%
!! CTCCACTGTAAGCTATTTTA+TGG + chr6_4:9699631-9699650 Msa0975910:intron 35.0%
GCTCAAAAGCTGAAAAGATA+AGG - chr6_4:9699657-9699676 None:intergenic 35.0%
! CCTATATGGTAAGGCAATTT+TGG - chr6_4:9699816-9699835 None:intergenic 35.0%
CCAAAATTGCCTTACCATAT+AGG + chr6_4:9699813-9699832 Msa0975910:intron 35.0%
AAGGGCAGAAAATTCCTATA+TGG - chr6_4:9699830-9699849 None:intergenic 35.0%
!! ATTTTCTGCCCTTAACTTGA+TGG + chr6_4:9699837-9699856 Msa0975910:intron 35.0%
AGCCATAACATTGAGGTTAT+TGG + chr6_4:9699952-9699971 Msa0975910:intron 35.0%
CTCCAATAACCTCAATGTTA+TGG - chr6_4:9699957-9699976 None:intergenic 35.0%
GGTGATGTTATATGTATTGC+TGG - chr6_4:9700133-9700152 None:intergenic 35.0%
GCAATACATATAACATCACC+AGG + chr6_4:9700133-9700152 Msa0975910:CDS 35.0%
CTAAAACATTGAATTAGGCC+TGG - chr6_4:9700154-9700173 None:intergenic 35.0%
CGATTGCAGAAGTAAAACAA+AGG + chr6_4:9700210-9700229 Msa0975910:intron 35.0%
AGATTTCAGAAGATACTGCA+GGG - chr6_4:9700242-9700261 None:intergenic 35.0%
AAATAAATCAACCAGGCTCT+TGG + chr6_4:9700438-9700457 Msa0975910:intron 35.0%
!! GCTTAACTTTCTCTGAAATC+AGG - chr6_4:9700512-9700531 None:intergenic 35.0%
GAGAAAGTTAAGCATGTGTT+TGG + chr6_4:9700519-9700538 Msa0975910:intron 35.0%
AGTTAAGCATGTGTTTGGTA+TGG + chr6_4:9700524-9700543 Msa0975910:intron 35.0%
AATGCACTTTCACTGTGATT+TGG - chr6_4:9700616-9700635 None:intergenic 35.0%
! AAATCACAGTGAAAGTGCAT+TGG + chr6_4:9700615-9700634 Msa0975910:intron 35.0%
! AATCACAGTGAAAGTGCATT+GGG + chr6_4:9700616-9700635 Msa0975910:intron 35.0%
AAACATGCTAAGTGTGTGTT+TGG - chr6_4:9700670-9700689 None:intergenic 35.0%
AAACACACACTTAGCATGTT+TGG + chr6_4:9700669-9700688 Msa0975910:intron 35.0%
TTGACGTGGAAGATTTGATT+TGG + chr6_4:9700731-9700750 Msa0975910:intron 35.0%
! TTGGAGCTTTGATGAATTTG+CGG + chr6_4:9700750-9700769 Msa0975910:intron 35.0%
CCTGCCATATAACATTTCTT+AGG - chr6_4:9700863-9700882 None:intergenic 35.0%
CCTAAGAAATGTTATATGGC+AGG + chr6_4:9700860-9700879 Msa0975910:intron 35.0%
CCAGTCGAGATTCAAATATT+AGG - chr6_4:9700967-9700986 None:intergenic 35.0%
CCTAATATTTGAATCTCGAC+TGG + chr6_4:9700964-9700983 Msa0975910:intron 35.0%
TATCCAACTGTGCTTCAAAT+AGG + chr6_4:9701006-9701025 Msa0975910:intron 35.0%
! AATCCTATTTGAAGCACAGT+TGG - chr6_4:9701012-9701031 None:intergenic 35.0%
! CACTGAACTTTGTTTGTAAC+AGG + chr6_4:9701170-9701189 Msa0975910:intron 35.0%
! TGTAACAGGTTTTTGCAATG+AGG + chr6_4:9701184-9701203 Msa0975910:intron 35.0%
! TTTTTGCAATGAGGAGAAGA+AGG + chr6_4:9701193-9701212 Msa0975910:CDS 35.0%
! TTTTGCAATGAGGAGAAGAA+GGG + chr6_4:9701194-9701213 Msa0975910:CDS 35.0%
GTTTCATATCTTGCTAGATC+AGG - chr6_4:9701345-9701364 None:intergenic 35.0%
GAAAGAAACAGCATCATCAA+TGG - chr6_4:9701367-9701386 None:intergenic 35.0%
CTTGAAATTGATGGAGAAGT+TGG + chr6_4:9701408-9701427 Msa0975910:CDS 35.0%
AATTGATGGAGAAGTTGGAT+CGG + chr6_4:9701413-9701432 Msa0975910:CDS 35.0%
CAACTATGACAATCACAAGT+TGG - chr6_4:9701492-9701511 None:intergenic 35.0%
ACTTGTGATTGTCATAGTTG+AGG + chr6_4:9701492-9701511 Msa0975910:three_prime_UTR 35.0%
TTGTGTCAGTTACAAGAGAA+CGG - chr6_4:9701543-9701562 None:intergenic 35.0%
GGCCATAAAATAGCTTACAG+TGG - chr6_4:9699636-9699655 None:intergenic 40.0%
!! AAGGCAATTTTGGCCATCTA+AGG - chr6_4:9699806-9699825 None:intergenic 40.0%
! TGTTATGGCTGCATTTGCTA+TGG - chr6_4:9699942-9699961 None:intergenic 40.0%
CAAATGCAGCCATAACATTG+AGG + chr6_4:9699945-9699964 Msa0975910:intron 40.0%
GTATTGCTGGATTCTGCATA+TGG - chr6_4:9700120-9700139 None:intergenic 40.0%
GAGATTTCAGAAGATACTGC+AGG - chr6_4:9700243-9700262 None:intergenic 40.0%
!! ACTTTCTCTGAAATCAGGGT+TGG - chr6_4:9700507-9700526 None:intergenic 40.0%
CGTTGGAACTTGCAAAATCA+CGG + chr6_4:9700547-9700566 Msa0975910:intron 40.0%
TCACGGTGGAAAATCAAGTT+TGG + chr6_4:9700564-9700583 Msa0975910:intron 40.0%
CACGGTGGAAAATCAAGTTT+GGG + chr6_4:9700565-9700584 Msa0975910:intron 40.0%
! AGTGAAAGTGCATTGGGAAT+TGG + chr6_4:9700622-9700641 Msa0975910:intron 40.0%
!! AGTGCATTGGGAATTGGTTT+TGG + chr6_4:9700628-9700647 Msa0975910:intron 40.0%
!!! GTGCATTGGGAATTGGTTTT+GGG + chr6_4:9700629-9700648 Msa0975910:intron 40.0%
!! ACTTAGCATGTTTGGTTCTG+CGG + chr6_4:9700677-9700696 Msa0975910:intron 40.0%
CGATGAAAATCATGTTGACG+TGG + chr6_4:9700717-9700736 Msa0975910:intron 40.0%
GCACAGTTGGATAATAAACG+CGG - chr6_4:9700999-9701018 None:intergenic 40.0%
AATAGGATTACCTCTCGTGA+AGG + chr6_4:9701023-9701042 Msa0975910:intron 40.0%
ATAGGATTACCTCTCGTGAA+GGG + chr6_4:9701024-9701043 Msa0975910:intron 40.0%
AACATACATGACCAAAGCCA+CGG - chr6_4:9701098-9701117 None:intergenic 40.0%
TGTACTATTAGAACCAGGGA+AGG + chr6_4:9701239-9701258 Msa0975910:CDS 40.0%
TGAAAGAGTGGCTCACAAAT+TGG + chr6_4:9701301-9701320 Msa0975910:CDS 40.0%
TCATATCTTGCTAGATCAGG+AGG - chr6_4:9701342-9701361 None:intergenic 40.0%
TCAGTGGTATGAAGTTCGTT+TGG + chr6_4:9701437-9701456 Msa0975910:CDS 40.0%
GGCCATAAAATAGCTTACAG+TGG - chr6_4:9699636-9699655 None:intergenic 40.0%
!! AAGGCAATTTTGGCCATCTA+AGG - chr6_4:9699806-9699825 None:intergenic 40.0%
! TGTTATGGCTGCATTTGCTA+TGG - chr6_4:9699942-9699961 None:intergenic 40.0%
CAAATGCAGCCATAACATTG+AGG + chr6_4:9699945-9699964 Msa0975910:intron 40.0%
GTATTGCTGGATTCTGCATA+TGG - chr6_4:9700120-9700139 None:intergenic 40.0%
GAGATTTCAGAAGATACTGC+AGG - chr6_4:9700243-9700262 None:intergenic 40.0%
!! ACTTTCTCTGAAATCAGGGT+TGG - chr6_4:9700507-9700526 None:intergenic 40.0%
CGTTGGAACTTGCAAAATCA+CGG + chr6_4:9700547-9700566 Msa0975910:intron 40.0%
TCACGGTGGAAAATCAAGTT+TGG + chr6_4:9700564-9700583 Msa0975910:intron 40.0%
CACGGTGGAAAATCAAGTTT+GGG + chr6_4:9700565-9700584 Msa0975910:intron 40.0%
! AGTGAAAGTGCATTGGGAAT+TGG + chr6_4:9700622-9700641 Msa0975910:intron 40.0%
!! AGTGCATTGGGAATTGGTTT+TGG + chr6_4:9700628-9700647 Msa0975910:intron 40.0%
!!! GTGCATTGGGAATTGGTTTT+GGG + chr6_4:9700629-9700648 Msa0975910:intron 40.0%
!! ACTTAGCATGTTTGGTTCTG+CGG + chr6_4:9700677-9700696 Msa0975910:intron 40.0%
CGATGAAAATCATGTTGACG+TGG + chr6_4:9700717-9700736 Msa0975910:intron 40.0%
GCACAGTTGGATAATAAACG+CGG - chr6_4:9700999-9701018 None:intergenic 40.0%
AATAGGATTACCTCTCGTGA+AGG + chr6_4:9701023-9701042 Msa0975910:intron 40.0%
ATAGGATTACCTCTCGTGAA+GGG + chr6_4:9701024-9701043 Msa0975910:intron 40.0%
AACATACATGACCAAAGCCA+CGG - chr6_4:9701098-9701117 None:intergenic 40.0%
TGTACTATTAGAACCAGGGA+AGG + chr6_4:9701239-9701258 Msa0975910:CDS 40.0%
TGAAAGAGTGGCTCACAAAT+TGG + chr6_4:9701301-9701320 Msa0975910:CDS 40.0%
TCATATCTTGCTAGATCAGG+AGG - chr6_4:9701342-9701361 None:intergenic 40.0%
TCAGTGGTATGAAGTTCGTT+TGG + chr6_4:9701437-9701456 Msa0975910:CDS 40.0%
AGGCTGCAAAACAACTACCA+TGG - chr6_4:9699584-9699603 None:intergenic 45.0%
!! GTAGTTGTTTTGCAGCCTCA+TGG + chr6_4:9699586-9699605 Msa0975910:CDS 45.0%
CAACTTGAGGCAGTCTATGA+TGG - chr6_4:9700186-9700205 None:intergenic 45.0%
TCACAAGAATACCAAGAGCC+TGG - chr6_4:9700452-9700471 None:intergenic 45.0%
!! CTGAAATCAGGGTTGGTACT+TGG - chr6_4:9700500-9700519 None:intergenic 45.0%
TGGAACTTGCAAAATCACGG+TGG + chr6_4:9700550-9700569 Msa0975910:intron 45.0%
!! CTTAGCATGTTTGGTTCTGC+GGG + chr6_4:9700678-9700697 Msa0975910:intron 45.0%
!! TTAGCATGTTTGGTTCTGCG+GGG + chr6_4:9700679-9700698 Msa0975910:intron 45.0%
TTCAAGTGCCAACCATGGTT+AGG + chr6_4:9700904-9700923 Msa0975910:intron 45.0%
AGAGCTAATCTTTCACAGCG+TGG + chr6_4:9700937-9700956 Msa0975910:intron 45.0%
ATTTGAATCTCGACTGGGAG+AGG + chr6_4:9700970-9700989 Msa0975910:intron 45.0%
CTACATATTCCCTTCACGAG+AGG - chr6_4:9701036-9701055 None:intergenic 45.0%
AGGCTGCAAAACAACTACCA+TGG - chr6_4:9699584-9699603 None:intergenic 45.0%
!! GTAGTTGTTTTGCAGCCTCA+TGG + chr6_4:9699586-9699605 Msa0975910:CDS 45.0%
CAACTTGAGGCAGTCTATGA+TGG - chr6_4:9700186-9700205 None:intergenic 45.0%
TCACAAGAATACCAAGAGCC+TGG - chr6_4:9700452-9700471 None:intergenic 45.0%
!! CTGAAATCAGGGTTGGTACT+TGG - chr6_4:9700500-9700519 None:intergenic 45.0%
TGGAACTTGCAAAATCACGG+TGG + chr6_4:9700550-9700569 Msa0975910:intron 45.0%
!! CTTAGCATGTTTGGTTCTGC+GGG + chr6_4:9700678-9700697 Msa0975910:intron 45.0%
!! TTAGCATGTTTGGTTCTGCG+GGG + chr6_4:9700679-9700698 Msa0975910:intron 45.0%
TTCAAGTGCCAACCATGGTT+AGG + chr6_4:9700904-9700923 Msa0975910:intron 45.0%
AGAGCTAATCTTTCACAGCG+TGG + chr6_4:9700937-9700956 Msa0975910:intron 45.0%
ATTTGAATCTCGACTGGGAG+AGG + chr6_4:9700970-9700989 Msa0975910:intron 45.0%
CTACATATTCCCTTCACGAG+AGG - chr6_4:9701036-9701055 None:intergenic 45.0%
!!! TTAGTTTTTTTATTTATTTT+TGG - chr6_4:9701063-9701082 None:intergenic 5.0%
!!! TTAGTTTTTTTATTTATTTT+TGG - chr6_4:9701063-9701082 None:intergenic 5.0%
CTGCAATCGAGTGCAACTTG+AGG - chr6_4:9700199-9700218 None:intergenic 50.0%
GCATGTGTTTGGTATGGCGT+TGG + chr6_4:9700530-9700549 Msa0975910:intron 50.0%
! CACTGTGATTTGGCTGAAGC+TGG - chr6_4:9700606-9700625 None:intergenic 50.0%
! CAGGTTTCAAGTGCCAACCA+TGG + chr6_4:9700899-9700918 Msa0975910:intron 50.0%
CCACTAGACCTAACCATGGT+TGG - chr6_4:9700915-9700934 None:intergenic 50.0%
CCAACCATGGTTAGGTCTAG+TGG + chr6_4:9700912-9700931 Msa0975910:intron 50.0%
CTCTCCACTAGACCTAACCA+TGG - chr6_4:9700919-9700938 None:intergenic 50.0%
! ACTAACTGTGTCAAGTGCCG+TGG + chr6_4:9701078-9701097 Msa0975910:intron 50.0%
TAGAACCAGGGAAGGATGAG+AGG + chr6_4:9701247-9701266 Msa0975910:CDS 50.0%
ACAAACCTCTCATCCTTCCC+TGG - chr6_4:9701255-9701274 None:intergenic 50.0%
GGATGAGAGGTTTGTGTCAG+AGG + chr6_4:9701260-9701279 Msa0975910:CDS 50.0%
! GAGAAGTTGGATCGGTTCAG+TGG + chr6_4:9701421-9701440 Msa0975910:CDS 50.0%
CTGCAATCGAGTGCAACTTG+AGG - chr6_4:9700199-9700218 None:intergenic 50.0%
GCATGTGTTTGGTATGGCGT+TGG + chr6_4:9700530-9700549 Msa0975910:intron 50.0%
! CACTGTGATTTGGCTGAAGC+TGG - chr6_4:9700606-9700625 None:intergenic 50.0%
! CAGGTTTCAAGTGCCAACCA+TGG + chr6_4:9700899-9700918 Msa0975910:intron 50.0%
CCACTAGACCTAACCATGGT+TGG - chr6_4:9700915-9700934 None:intergenic 50.0%
CCAACCATGGTTAGGTCTAG+TGG + chr6_4:9700912-9700931 Msa0975910:intron 50.0%
CTCTCCACTAGACCTAACCA+TGG - chr6_4:9700919-9700938 None:intergenic 50.0%
! ACTAACTGTGTCAAGTGCCG+TGG + chr6_4:9701078-9701097 Msa0975910:intron 50.0%
TAGAACCAGGGAAGGATGAG+AGG + chr6_4:9701247-9701266 Msa0975910:CDS 50.0%
ACAAACCTCTCATCCTTCCC+TGG - chr6_4:9701255-9701274 None:intergenic 50.0%
GGATGAGAGGTTTGTGTCAG+AGG + chr6_4:9701260-9701279 Msa0975910:CDS 50.0%
! GAGAAGTTGGATCGGTTCAG+TGG + chr6_4:9701421-9701440 Msa0975910:CDS 50.0%
! TGTGTCAAGTGCCGTGGCTT+TGG + chr6_4:9701084-9701103 Msa0975910:intron 55.0%
GAGTGGCTCACAAATTGGCC+TGG + chr6_4:9701306-9701325 Msa0975910:CDS 55.0%
TCAGGAGGAAGAGTCTTGCC+AGG - chr6_4:9701327-9701346 None:intergenic 55.0%
! TGTGTCAAGTGCCGTGGCTT+TGG + chr6_4:9701084-9701103 Msa0975910:intron 55.0%
GAGTGGCTCACAAATTGGCC+TGG + chr6_4:9701306-9701325 Msa0975910:CDS 55.0%
TCAGGAGGAAGAGTCTTGCC+AGG - chr6_4:9701327-9701346 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 9699475 9701665 9699475 ID=Msa0975910;Name=Msa0975910
chr6_4 mRNA 9699475 9701665 9699475 ID=Msa0975910-mRNA-1;Parent=Msa0975910;Name=Msa0975910-mRNA-1;_AED=0.02;_eAED=0.02;_QI=108|0.5|0.66|1|0.5|0.66|3|201|141
chr6_4 exon 9699475 9699637 9699475 ID=Msa0975910-mRNA-1:exon:3562;Parent=Msa0975910-mRNA-1
chr6_4 exon 9700104 9700201 9700104 ID=Msa0975910-mRNA-1:exon:3563;Parent=Msa0975910-mRNA-1
chr6_4 exon 9701192 9701665 9701192 ID=Msa0975910-mRNA-1:exon:3564;Parent=Msa0975910-mRNA-1
chr6_4 five_prime_UTR 9699475 9699582 9699475 ID=Msa0975910-mRNA-1:five_prime_utr;Parent=Msa0975910-mRNA-1
chr6_4 CDS 9699583 9699637 9699583 ID=Msa0975910-mRNA-1:cds;Parent=Msa0975910-mRNA-1
chr6_4 CDS 9700104 9700201 9700104 ID=Msa0975910-mRNA-1:cds;Parent=Msa0975910-mRNA-1
chr6_4 CDS 9701192 9701464 9701192 ID=Msa0975910-mRNA-1:cds;Parent=Msa0975910-mRNA-1
chr6_4 three_prime_UTR 9701465 9701665 9701465 ID=Msa0975910-mRNA-1:three_prime_utr;Parent=Msa0975910-mRNA-1
Gene Sequence

>Msa0975910

ATGGTAGTTGTTTTGCAGCCTCATGGTTTCAATGTTAGAGTTCAGCTTCTCCACTCTACAAAAAGTTACCATATGCAGAATCCAGCAATACATATAACATCACCAGGCCTAATTCAATGTTTTAGTTCTTCTATCCATCATAGACTGCCTCAAGTTTTTGCAATGAGGAGAAGAAGGGCAAATGAAAGAACAGATACTTATGTACTATTAGAACCAGGGAAGGATGAGAGGTTTGTGTCAGAGGAAGAGTTGAAAGATACTTTGAAAGAGTGGCTCACAAATTGGCCTGGCAAGACTCTTCCTCCTGATCTAGCAAGATATGAAACCATTGATGATGCTGTTTCTTTCTTAGCAAAGTCCTTTTGTGAACTTGAAATTGATGGAGAAGTTGGATCGGTTCAGTGGTATGAAGTTCGTTTGGAATGA

Protein sequence

>Msa0975910

MVVVLQPHGFNVRVQLLHSTKSYHMQNPAIHITSPGLIQCFSSSIHHRLPQVFAMRRRRANERTDTYVLLEPGKDERFVSEEELKDTLKEWLTNWPGKTLPPDLARYETIDDAVSFLAKSFCELEIDGEVGSVQWYEVRLE*