AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0007450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0007450 MtrunA17_Chr1g0148361 79.310 261 9 2 1 216 1 261 2.48e-147 410
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0007450 AT4G31115.1 43.814 194 58 3 45 192 53 241 6.86e-43 145
Msa0007450 AT4G31115.2 43.814 194 58 3 45 192 77 265 1.85e-42 144

Find 55 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATACCAGTGGGTGAAATTT+TGG 0.136941 1_1:+10714560 None:intergenic
GGACCTTCAACGGCTGAAAT+AGG 0.309804 1_1:+10712196 None:intergenic
ATGGATATGGACAACACTTC+TGG 0.311251 1_1:-10714597 Msa0007450:CDS
TATTATCTAAATCAGTCTTC+TGG 0.365085 1_1:-10711867 Msa0007450:CDS
TAAATAACTCACATGTTTCC+AGG 0.371138 1_1:+10712175 None:intergenic
AAATCTGTTTGCTACCAAAA+AGG 0.371402 1_1:-10714292 Msa0007450:CDS
TGTTAAAGGAAACACACTTT+TGG 0.376844 1_1:-10714925 Msa0007450:five_prime_UTR
GGTTGAAATGATTTCTTGTA+AGG 0.383448 1_1:-10713278 Msa0007450:intron
TGTAACAAATGGTATGGATA+TGG 0.393474 1_1:-10714610 Msa0007450:CDS
CTGAGCTTTGCAGCCTACTT+TGG 0.394426 1_1:-10711684 Msa0007450:three_prime_UTR
ACATATGATGATGATGTTCT+TGG 0.416434 1_1:-10714252 Msa0007450:CDS
CATACCATTTGTTACACAAA+AGG 0.421304 1_1:+10714617 None:intergenic
ATTTCAGCCGTTGAAGGTCC+TGG 0.421555 1_1:-10712193 Msa0007450:CDS
CATACAGATTCATTGATTGA+TGG 0.424863 1_1:-10714814 Msa0007450:exon
CTCAACAGATGAAGATTGCT+TGG 0.427861 1_1:-10713299 Msa0007450:CDS
TGGTACAAGGTTATGATGAA+TGG 0.432437 1_1:-10711905 Msa0007450:CDS
AACTTCAAAAGTTTAAGTTT+CGG 0.438791 1_1:+10713355 None:intergenic
CAATGAATCTGTATGGTAAA+GGG 0.446868 1_1:+10714822 None:intergenic
CTCTTGATGCTAACACATAC+AGG 0.460337 1_1:-10714140 Msa0007450:intron
TCAATGAATCTGTATGGTAA+AGG 0.470623 1_1:+10714821 None:intergenic
CTACTTCAACAGATGGTACA+AGG 0.480356 1_1:-10711918 Msa0007450:CDS
CCTTCCAAAATTTCACCCAC+TGG 0.481584 1_1:-10714564 Msa0007450:intron
GGTACAAGGTTATGATGAAT+GGG 0.494532 1_1:-10711904 Msa0007450:CDS
CATCAATCAATGAATCTGTA+TGG 0.497486 1_1:+10714815 None:intergenic
CATGTTTCCAGGACCTTCAA+CGG 0.498643 1_1:+10712186 None:intergenic
AACGGCTGAAATAGGCATTA+CGG 0.503607 1_1:+10712204 None:intergenic
TAGTAAGAAAATGGGCATCA+AGG 0.504994 1_1:-10714355 Msa0007450:CDS
ATACAGATTCATTGATTGAT+GGG 0.508048 1_1:-10714813 Msa0007450:intron
CAGAATGATGCAAGCTTTGG+TGG 0.509605 1_1:-10711958 Msa0007450:CDS
CTGCTGCAATTCCACTAGGC+TGG 0.511236 1_1:+10714196 None:intergenic
GAAATAGGCATTACGGTGAA+TGG 0.513014 1_1:+10712211 None:intergenic
ATGCCTATTTCAGCCGTTGA+AGG 0.519281 1_1:-10712199 Msa0007450:CDS
CTAAATCAGTCTTCTGGTGA+AGG 0.523077 1_1:-10711861 Msa0007450:CDS
GTCATCTAAATCTTTATACA+TGG 0.534975 1_1:-10711654 Msa0007450:three_prime_UTR
GTGCAGAATGATGCAAGCTT+TGG 0.547591 1_1:-10711961 Msa0007450:intron
GGTGAAGGCGGTGACTTCCT+CGG 0.560745 1_1:-10714334 Msa0007450:CDS
CAAGCAATCTTCATCTGTTG+AGG 0.563145 1_1:+10713300 None:intergenic
ACCATCTGTTGAAGTAGAAG+TGG 0.580440 1_1:+10711924 None:intergenic
GATGACAATGAGACCAAAGT+AGG 0.581697 1_1:+10711671 None:intergenic
AGAACATCATCATCATATGT+TGG 0.582748 1_1:+10714255 None:intergenic
GGCTTAGAAATTCACTGATG+TGG 0.588070 1_1:+10714217 None:intergenic
GAAAATGGGCATCAAGGTGA+AGG 0.588739 1_1:-10714349 Msa0007450:CDS
TATGATGATGATGTTCTTGG+AGG 0.598580 1_1:-10714249 Msa0007450:CDS
TTTCTTTGCATTTGAATCCG+AGG 0.616050 1_1:+10714317 None:intergenic
CTTCTGCATGCGAATACTAG+TGG 0.616059 1_1:-10714979 None:intergenic
TAGTAGAGACAACAGAGGGA+GGG 0.616278 1_1:-10711830 Msa0007450:CDS
GCCACTTCTACTTCAACAGA+TGG 0.618609 1_1:-10711925 Msa0007450:CDS
TTTGTAGTAGAGACAACAGA+GGG 0.633580 1_1:-10711834 Msa0007450:CDS
AGCACTGCTGCAATTCCACT+AGG 0.636774 1_1:+10714192 None:intergenic
GTAGTAGAGACAACAGAGGG+AGG 0.648680 1_1:-10711831 Msa0007450:CDS
GAATTTCTAAGCCAGCCTAG+TGG 0.653471 1_1:-10714207 Msa0007450:CDS
AATGGGCATCAAGGTGAAGG+CGG 0.660410 1_1:-10714346 Msa0007450:CDS
GTAACACGCAGATCTATGAA+AGG 0.668571 1_1:+10713322 None:intergenic
TGCAGCAGTGCTGAACACAA+AGG 0.690214 1_1:-10714181 Msa0007450:CDS
AAGTTGTGAGTAACAGACAG+TGG 0.698506 1_1:-10714889 Msa0007450:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATGAAAAAAAAAAACAT+TGG + chr1_1:10711803-10711822 None:intergenic 10.0%
!!! TATTTATTTTAGTAAGAAAA+TGG - chr1_1:10712215-10712234 Msa0007450:CDS 10.0%
!!! ATTTATTTTAGTAAGAAAAT+GGG - chr1_1:10712216-10712235 Msa0007450:CDS 10.0%
!!! ATTTTATAATATAGAAAATG+TGG - chr1_1:10714591-10714610 Msa0007450:CDS 10.0%
!!! CAATAAATTTATTTTTAGTT+TGG - chr1_1:10714836-10714855 Msa0007450:five_prime_UTR 10.0%
!!! TTTTGTTTTTTTACTGTTAA+AGG - chr1_1:10711640-10711659 Msa0007450:three_prime_UTR 15.0%
!!! ATTATTCTTTAAAGTTTGTT+TGG - chr1_1:10712497-10712516 Msa0007450:intron 15.0%
!! AAAATACTATTCCTTATATT+TGG - chr1_1:10712692-10712711 Msa0007450:intron 15.0%
!! TTTAGACAATTGATTATATA+AGG - chr1_1:10712982-10713001 Msa0007450:intron 15.0%
!! TGATTAAGATTTATTACATA+GGG + chr1_1:10713447-10713466 None:intergenic 15.0%
!! ATGATTAAGATTTATTACAT+AGG + chr1_1:10713448-10713467 None:intergenic 15.0%
!! TAAGTCTTCATATAAAAAAA+AGG + chr1_1:10713631-10713650 None:intergenic 15.0%
!!! TAAATAAATATGCATGTTTT+AGG + chr1_1:10713683-10713702 None:intergenic 15.0%
!!! TTTTTTTATAACCATGTTAT+CGG - chr1_1:10713898-10713917 Msa0007450:intron 15.0%
!! ATGTTTATTAATCATTTCTA+TGG - chr1_1:10714064-10714083 Msa0007450:intron 15.0%
!!! AATTTATTTTTAGTTTGGTA+AGG - chr1_1:10714841-10714860 Msa0007450:five_prime_UTR 15.0%
!! ACTATGAAATCTTGAAATTA+TGG + chr1_1:10711879-10711898 None:intergenic 20.0%
!! TTTCAAGATTTCATAGTTAT+TGG - chr1_1:10711882-10711901 Msa0007450:CDS 20.0%
!! ATTAAATTAAAGTCAAGTTC+AGG - chr1_1:10712560-10712579 Msa0007450:intron 20.0%
!! CTGAATATAGAAATAGAATT+AGG + chr1_1:10712613-10712632 None:intergenic 20.0%
!!! TTTTCAACCTATTTTGTATA+TGG + chr1_1:10712676-10712695 None:intergenic 20.0%
!! TTGATTATATAAGGTTCATT+TGG + chr1_1:10712952-10712971 None:intergenic 20.0%
!! CTTAGACAATTGATTATATA+AGG + chr1_1:10712961-10712980 None:intergenic 20.0%
!! TTGATTATATAAGGCTTATT+TGG - chr1_1:10712991-10713010 Msa0007450:intron 20.0%
!!! AACTTCAAAAGTTTAAGTTT+CGG + chr1_1:10713227-10713246 None:intergenic 20.0%
!! TTAATCATCATTCTTGAAAA+TGG - chr1_1:10713460-10713479 Msa0007450:intron 20.0%
!! AACAATTCTTCAAATCAAAA+TGG + chr1_1:10713603-10713622 None:intergenic 20.0%
!! GATGTATTCAAAAATGAAAT+GGG + chr1_1:10713789-10713808 None:intergenic 20.0%
!! TGATGTATTCAAAAATGAAA+TGG + chr1_1:10713790-10713809 None:intergenic 20.0%
!!! TATATTTTTTTTGCAGTTTG+AGG - chr1_1:10713811-10713830 Msa0007450:intron 20.0%
!!! ATATTTTTTTTGCAGTTTGA+GGG - chr1_1:10713812-10713831 Msa0007450:intron 20.0%
!! TAGAATCATATAATATCACA+AGG + chr1_1:10714547-10714566 None:intergenic 20.0%
!!! TCTTTTTCATAAACATCAAA+AGG + chr1_1:10714779-10714798 None:intergenic 20.0%
!! ATACAGATTCATTGATTGAT+GGG - chr1_1:10711766-10711785 Msa0007450:three_prime_UTR 25.0%
!! TTTATGTTCCATTGATAGTT+TGG - chr1_1:10711913-10711932 Msa0007450:CDS 25.0%
! AATCCAACAGGAAAAAAAAA+TGG + chr1_1:10712128-10712147 None:intergenic 25.0%
!! TAGTTTAACTCTTTCCTTTT+TGG + chr1_1:10712304-10712323 None:intergenic 25.0%
!! ACATATCTTCAATTCTTTTC+TGG - chr1_1:10712466-10712485 Msa0007450:intron 25.0%
!!! TCTTTAAAGTTTGTTTGGTT+TGG - chr1_1:10712502-10712521 Msa0007450:intron 25.0%
!!! GTTATTTTCATAAGCAATCT+TGG - chr1_1:10712841-10712860 Msa0007450:intron 25.0%
! TATATAAGGTTCATTTGGAT+TGG + chr1_1:10712947-10712966 None:intergenic 25.0%
! TATATAAGGCTTATTTGGAT+TGG - chr1_1:10712996-10713015 Msa0007450:intron 25.0%
! TTATGAACTTCGAAAAAATG+TGG + chr1_1:10714022-10714041 None:intergenic 25.0%
! AATTGAAATAGCAAGGATTA+AGG + chr1_1:10714251-10714270 None:intergenic 25.0%
! GATAAGAAATTGAAATAGCA+AGG + chr1_1:10714258-10714277 None:intergenic 25.0%
! TATTATCTAAATCAGTCTTC+TGG - chr1_1:10714712-10714731 Msa0007450:intron 25.0%
! GTCATCTAAATCTTTATACA+TGG - chr1_1:10714925-10714944 Msa0007450:five_prime_UTR 25.0%
! TGTTAAAGGAAACACACTTT+TGG - chr1_1:10711654-10711673 Msa0007450:three_prime_UTR 30.0%
CAATGAATCTGTATGGTAAA+GGG + chr1_1:10711760-10711779 None:intergenic 30.0%
TCAATGAATCTGTATGGTAA+AGG + chr1_1:10711761-10711780 None:intergenic 30.0%
CATCAATCAATGAATCTGTA+TGG + chr1_1:10711767-10711786 None:intergenic 30.0%
! CATACAGATTCATTGATTGA+TGG - chr1_1:10711765-10711784 Msa0007450:three_prime_UTR 30.0%
! CAATCCTTTTGTGTAACAAA+TGG - chr1_1:10711958-10711977 Msa0007450:CDS 30.0%
! CATACCATTTGTTACACAAA+AGG + chr1_1:10711965-10711984 None:intergenic 30.0%
! CTTTTGTGTAACAAATGGTA+TGG - chr1_1:10711963-10711982 Msa0007450:intron 30.0%
TGTAACAAATGGTATGGATA+TGG - chr1_1:10711969-10711988 Msa0007450:intron 30.0%
AGTTAAGTAAACATACCAGT+GGG + chr1_1:10712033-10712052 None:intergenic 30.0%
AAGTTAAGTAAACATACCAG+TGG + chr1_1:10712034-10712053 None:intergenic 30.0%
!!! CTTCCATTTTTTTTTCCTGT+TGG - chr1_1:10712122-10712141 Msa0007450:intron 30.0%
!!! TTTTTTTCCTGTTGGATTGT+AGG - chr1_1:10712130-10712149 Msa0007450:intron 30.0%
! AAATCTGTTTGCTACCAAAA+AGG - chr1_1:10712287-10712306 Msa0007450:intron 30.0%
AGAACATCATCATCATATGT+TGG + chr1_1:10712327-10712346 None:intergenic 30.0%
! ACATATGATGATGATGTTCT+TGG - chr1_1:10712327-10712346 Msa0007450:intron 30.0%
! TATCTTCAATTCTTTTCTGG+TGG - chr1_1:10712469-10712488 Msa0007450:intron 30.0%
AGTGTCACCATATACAAAAT+AGG - chr1_1:10712666-10712685 Msa0007450:intron 30.0%
AGTCACACATTCCAAATATA+AGG + chr1_1:10712706-10712725 None:intergenic 30.0%
! ATATTTGGAATGTGTGACTA+TGG - chr1_1:10712707-10712726 Msa0007450:intron 30.0%
TTTAGTTGCTTACTCATACA+GGG + chr1_1:10712733-10712752 None:intergenic 30.0%
ATTTAGTTGCTTACTCATAC+AGG + chr1_1:10712734-10712753 None:intergenic 30.0%
TATGAGTAAGCAACTAAATG+AGG - chr1_1:10712735-10712754 Msa0007450:intron 30.0%
TTCTTATTGTTCTTGTGTTG+TGG - chr1_1:10713044-10713063 Msa0007450:intron 30.0%
GGTTGAAATGATTTCTTGTA+AGG - chr1_1:10713301-10713320 Msa0007450:CDS 30.0%
AAGCTGTAAAATCCTGTAAA+GGG + chr1_1:10713331-10713350 None:intergenic 30.0%
AAAGCTGTAAAATCCTGTAA+AGG + chr1_1:10713332-10713351 None:intergenic 30.0%
TTATAATCAGGTGACTTCAT+GGG + chr1_1:10713512-10713531 None:intergenic 30.0%
TTTATAATCAGGTGACTTCA+TGG + chr1_1:10713513-10713532 None:intergenic 30.0%
! AAAAGACAGGCTTTATAATC+AGG + chr1_1:10713524-10713543 None:intergenic 30.0%
ATCACGTTTATCAAATCGTA+GGG + chr1_1:10713713-10713732 None:intergenic 30.0%
TATCACGTTTATCAAATCGT+AGG + chr1_1:10713714-10713733 None:intergenic 30.0%
AAATTAGTTAAAGGCAAAGC+TGG + chr1_1:10713937-10713956 None:intergenic 30.0%
!! TTTTTCGAAGTTCATAACAC+TGG - chr1_1:10714025-10714044 Msa0007450:intron 30.0%
ATATGGTAAATCACATGACA+TGG - chr1_1:10714098-10714117 Msa0007450:intron 30.0%
!!! TGCTGATACTGATTCATTTT+TGG - chr1_1:10714126-10714145 Msa0007450:intron 30.0%
TAAATAACTCACATGTTTCC+AGG + chr1_1:10714407-10714426 None:intergenic 30.0%
GAACAGAATGATAACTCTTA+TGG - chr1_1:10714465-10714484 Msa0007450:intron 30.0%
TAATTTGATTGCAGTGCTAG+TGG + chr1_1:10711831-10711850 None:intergenic 35.0%
!! AGAAAGCACCAAACTATCAA+TGG + chr1_1:10711924-10711943 None:intergenic 35.0%
!! GAAATTTTGGAAGGAATGTG+TGG + chr1_1:10712009-10712028 None:intergenic 35.0%
TAGTAAGAAAATGGGCATCA+AGG - chr1_1:10712224-10712243 Msa0007450:CDS 35.0%
TTTCTTTGCATTTGAATCCG+AGG + chr1_1:10712265-10712284 None:intergenic 35.0%
! TATGATGATGATGTTCTTGG+AGG - chr1_1:10712330-10712349 Msa0007450:intron 35.0%
TGTTACAGCATGAAAAAGAC+AGG + chr1_1:10713537-10713556 None:intergenic 35.0%
AGGTATCTGTATTGTGTTCA+TGG - chr1_1:10713871-10713890 Msa0007450:intron 35.0%
TCGAAAAAATGTGGTTGAGA+TGG + chr1_1:10714013-10714032 None:intergenic 35.0%
AATAAACATTGCTGCGACAT+GGG + chr1_1:10714053-10714072 None:intergenic 35.0%
TAATAAACATTGCTGCGACA+TGG + chr1_1:10714054-10714073 None:intergenic 35.0%
CTATGGATTTGCAGCATATA+TGG - chr1_1:10714081-10714100 Msa0007450:intron 35.0%
TGAAATAGCAAGGATTAAGG+AGG + chr1_1:10714248-10714267 None:intergenic 35.0%
TGGTACAAGGTTATGATGAA+TGG - chr1_1:10714674-10714693 Msa0007450:intron 35.0%
GGTACAAGGTTATGATGAAT+GGG - chr1_1:10714675-10714694 Msa0007450:intron 35.0%
! TTTTGTAGTAGAGACAACAG+AGG - chr1_1:10714744-10714763 Msa0007450:intron 35.0%
TTTGTAGTAGAGACAACAGA+GGG - chr1_1:10714745-10714764 Msa0007450:intron 35.0%
!! ACACTTTTGGTGACAGTTAG+AGG - chr1_1:10711667-10711686 Msa0007450:three_prime_UTR 40.0%
AAGTTGTGAGTAACAGACAG+TGG - chr1_1:10711690-10711709 Msa0007450:three_prime_UTR 40.0%
ATGGATATGGACAACACTTC+TGG - chr1_1:10711982-10712001 Msa0007450:intron 40.0%
! CATACCAGTGGGTGAAATTT+TGG + chr1_1:10712022-10712041 None:intergenic 40.0%
GTCAGATAGAGCAGAAACAA+AGG + chr1_1:10712075-10712094 None:intergenic 40.0%
! TTTGAGACCTACAATCCAAC+AGG + chr1_1:10712140-10712159 None:intergenic 40.0%
GGCTTAGAAATTCACTGATG+TGG + chr1_1:10712365-10712384 None:intergenic 40.0%
CTCTTGATGCTAACACATAC+AGG - chr1_1:10712439-10712458 Msa0007450:intron 40.0%
AGCATAAGCACTTGTGAGAA+TGG + chr1_1:10712904-10712923 None:intergenic 40.0%
GTAACACGCAGATCTATGAA+AGG + chr1_1:10713260-10713279 None:intergenic 40.0%
CAAGCAATCTTCATCTGTTG+AGG + chr1_1:10713282-10713301 None:intergenic 40.0%
CTCAACAGATGAAGATTGCT+TGG - chr1_1:10713280-10713299 Msa0007450:CDS 40.0%
! TTGTAAGGTGTTCCCTTTAC+AGG - chr1_1:10713316-10713335 Msa0007450:CDS 40.0%
! TCTTTTGGTAGAGCAACAGA+TGG - chr1_1:10713364-10713383 Msa0007450:CDS 40.0%
GTTTGAGGGTTCAGAAATTG+TGG - chr1_1:10713826-10713845 Msa0007450:intron 40.0%
! GAGCTAAATGAGCACTTTTC+AGG - chr1_1:10713851-10713870 Msa0007450:intron 40.0%
! GATACTTTGCACCGATAACA+TGG + chr1_1:10713912-10713931 None:intergenic 40.0%
TTAGTTAAAGGCAAAGCTGG+TGG + chr1_1:10713934-10713953 None:intergenic 40.0%
CCTTTAACTAATTTCCGCCA+GGG - chr1_1:10713943-10713962 Msa0007450:intron 40.0%
AGTCACTCAATTAGATTCCC+TGG + chr1_1:10713963-10713982 None:intergenic 40.0%
AGGGAATCTAATTGAGTGAC+TGG - chr1_1:10713962-10713981 Msa0007450:intron 40.0%
GAAGTTGAATCTCACACTTG+AGG - chr1_1:10714159-10714178 Msa0007450:CDS 40.0%
GAAATAGGCATTACGGTGAA+TGG + chr1_1:10714371-10714390 None:intergenic 40.0%
AACGGCTGAAATAGGCATTA+CGG + chr1_1:10714378-10714397 None:intergenic 40.0%
ACCATCTGTTGAAGTAGAAG+TGG + chr1_1:10714658-10714677 None:intergenic 40.0%
CTACTTCAACAGATGGTACA+AGG - chr1_1:10714661-10714680 Msa0007450:intron 40.0%
CTAAATCAGTCTTCTGGTGA+AGG - chr1_1:10714718-10714737 Msa0007450:intron 40.0%
GATGACAATGAGACCAAAGT+AGG + chr1_1:10714911-10714930 None:intergenic 40.0%
! CCAGTGGGTGAAATTTTGGA+AGG + chr1_1:10712018-10712037 None:intergenic 45.0%
CCTTCCAAAATTTCACCCAC+TGG - chr1_1:10712015-10712034 Msa0007450:intron 45.0%
GAAAATGGGCATCAAGGTGA+AGG - chr1_1:10712230-10712249 Msa0007450:intron 45.0%
GAATTTCTAAGCCAGCCTAG+TGG - chr1_1:10712372-10712391 Msa0007450:intron 45.0%
GCCTTTAACTAATTTCCGCC+AGG - chr1_1:10713942-10713961 Msa0007450:intron 45.0%
CCCTGGCGGAAATTAGTTAA+AGG + chr1_1:10713946-10713965 None:intergenic 45.0%
CACTCAATTAGATTCCCTGG+CGG + chr1_1:10713960-10713979 None:intergenic 45.0%
CTGGCCACCATTAGATTTAG+CGG - chr1_1:10713981-10714000 Msa0007450:intron 45.0%
TGGCCACCATTAGATTTAGC+GGG - chr1_1:10713982-10714001 Msa0007450:intron 45.0%
GAAGACCCCGCTAAATCTAA+TGG + chr1_1:10713991-10714010 None:intergenic 45.0%
ATGCCTATTTCAGCCGTTGA+AGG - chr1_1:10714380-10714399 Msa0007450:intron 45.0%
CATGTTTCCAGGACCTTCAA+CGG + chr1_1:10714396-10714415 None:intergenic 45.0%
GTGCAGAATGATGCAAGCTT+TGG - chr1_1:10714618-10714637 Msa0007450:CDS 45.0%
! CAGAATGATGCAAGCTTTGG+TGG - chr1_1:10714621-10714640 Msa0007450:CDS 45.0%
GCCACTTCTACTTCAACAGA+TGG - chr1_1:10714654-10714673 Msa0007450:intron 45.0%
TAGTAGAGACAACAGAGGGA+GGG - chr1_1:10714749-10714768 Msa0007450:intron 45.0%
!!! TTTAATTTTTTTTTTTCTTT+TGG - chr1_1:10713349-10713368 Msa0007450:CDS 5.0%
AATGGGCATCAAGGTGAAGG+CGG - chr1_1:10712233-10712252 Msa0007450:intron 50.0%
AGCACTGCTGCAATTCCACT+AGG + chr1_1:10712390-10712409 None:intergenic 50.0%
! TGCAGCAGTGCTGAACACAA+AGG - chr1_1:10712398-10712417 Msa0007450:intron 50.0%
GGCCACCATTAGATTTAGCG+GGG - chr1_1:10713983-10714002 Msa0007450:intron 50.0%
GACCCCGCTAAATCTAATGG+TGG + chr1_1:10713988-10714007 None:intergenic 50.0%
GGACCTTCAACGGCTGAAAT+AGG + chr1_1:10714386-10714405 None:intergenic 50.0%
ATTTCAGCCGTTGAAGGTCC+TGG - chr1_1:10714386-10714405 Msa0007450:intron 50.0%
GTAGTAGAGACAACAGAGGG+AGG - chr1_1:10714748-10714767 Msa0007450:intron 50.0%
CTGAGCTTTGCAGCCTACTT+TGG - chr1_1:10714895-10714914 Msa0007450:five_prime_UTR 50.0%
CTGCTGCAATTCCACTAGGC+TGG + chr1_1:10712386-10712405 None:intergenic 55.0%
GGTGAAGGCGGTGACTTCCT+CGG - chr1_1:10712245-10712264 Msa0007450:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 10711606 10714995 10711606 ID=Msa0007450;Name=Msa0007450
chr1_1 mRNA 10711606 10714995 10711606 ID=Msa0007450-mRNA-1;Parent=Msa0007450;Name=Msa0007450-mRNA-1;_AED=0.32;_eAED=0.32;_QI=178|0.8|1|1|0.2|0.83|6|212|216
chr1_1 exon 10711606 10711977 10711606 ID=Msa0007450-mRNA-1:exon:3939;Parent=Msa0007450-mRNA-1
chr1_1 exon 10712187 10712245 10712187 ID=Msa0007450-mRNA-1:exon:3938;Parent=Msa0007450-mRNA-1
chr1_1 exon 10713279 10713387 10713279 ID=Msa0007450-mRNA-1:exon:3937;Parent=Msa0007450-mRNA-1
chr1_1 exon 10714141 10714374 10714141 ID=Msa0007450-mRNA-1:exon:3936;Parent=Msa0007450-mRNA-1
chr1_1 exon 10714565 10714649 10714565 ID=Msa0007450-mRNA-1:exon:3935;Parent=Msa0007450-mRNA-1
chr1_1 exon 10714814 10714995 10714814 ID=Msa0007450-mRNA-1:exon:3934;Parent=Msa0007450-mRNA-1
chr1_1 five_prime_UTR 10714818 10714995 10714818 ID=Msa0007450-mRNA-1:five_prime_utr;Parent=Msa0007450-mRNA-1
chr1_1 CDS 10714814 10714817 10714814 ID=Msa0007450-mRNA-1:cds;Parent=Msa0007450-mRNA-1
chr1_1 CDS 10714565 10714649 10714565 ID=Msa0007450-mRNA-1:cds;Parent=Msa0007450-mRNA-1
chr1_1 CDS 10714141 10714374 10714141 ID=Msa0007450-mRNA-1:cds;Parent=Msa0007450-mRNA-1
chr1_1 CDS 10713279 10713387 10713279 ID=Msa0007450-mRNA-1:cds;Parent=Msa0007450-mRNA-1
chr1_1 CDS 10712187 10712245 10712187 ID=Msa0007450-mRNA-1:cds;Parent=Msa0007450-mRNA-1
chr1_1 CDS 10711818 10711977 10711818 ID=Msa0007450-mRNA-1:cds;Parent=Msa0007450-mRNA-1
chr1_1 three_prime_UTR 10711606 10711817 10711606 ID=Msa0007450-mRNA-1:three_prime_utr;Parent=Msa0007450-mRNA-1
Gene Sequence

>Msa0007450

ATGGCAAAAGCAATCCTTTTGTGTAACAAATGGTATGGATATGGACAACACTTCTGGACCACACATTCCTTCCAAAATTTCACCCACTGTAAGAAAATGGGCATCAAGGTGAAGGCGGTGACTTCCTCGGATTCAAATGCAAAGAAAGCAAATCTGTTTGCTACCAAAAAGGAAAGAGTTAAACTACCAACATATGATGATGATGTTCTTGGAGGAAACGAATACCACATCAGTGAATTTCTAAGCCAGCCTAGTGGAATTGCAGCAGTGCTGAACACAAAGGTCTTACAATCATTTCAATCTCTTGATGCTAACACATACAGGTGTGAACTTCCGAAACTTAAACTTTTGAAGTTTGAAGTTTCTCCTTTCATAGATCTGCGTGTTACCTCAACAGATGAAGATTGCTTGGTTGAAATGATTTCTTGTAAGATCTACACACGACCATTCACCGTAATGCCTATTTCAGCCGTTGAAGGTCCTGGAAACATAATGATGCAAGCTTTGGTGGACAAGCTCGTGCCACTTCTACTTCAACAGATGGTACAAGGTTATGATGAATGGGTTCAAAAGCAATTGTATTATCTAAATCAGTCTTCTGGTGAAGGAAATTTTGTAGTAGAGACAACAGAGGGAGGGAGAACCTTTTGA

Protein sequence

>Msa0007450

MAKAILLCNKWYGYGQHFWTTHSFQNFTHCKKMGIKVKAVTSSDSNAKKANLFATKKERVKLPTYDDDVLGGNEYHISEFLSQPSGIAAVLNTKVLQSFQSLDANTYRCELPKLKLLKFEVSPFIDLRVTSTDEDCLVEMISCKIYTRPFTVMPISAVEGPGNIMMQALVDKLVPLLLQQMVQGYDEWVQKQLYYLNQSSGEGNFVVETTEGGRTF*