AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0155540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0155540 MtrunA17_Chr1g0166331 96.575 146 5 0 1 146 1 146 2.35e-101 286
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0155540 AT2G33450.1 72.662 139 27 4 15 146 9 143 6.08e-61 184

Find 48 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATTGTAATTGAGTAAA+AGG 0.215746 1_4:+20990429 Msa0155540:three_prime_UTR
GGCCCTGTTTGATTTCTTTC+CGG 0.253338 1_4:-20990203 None:intergenic
ATCAAGTCCATTCTTCTCTA+TGG 0.282588 1_4:-20990353 None:intergenic
ACTGCAGTTTCTTTGTCTTA+TGG 0.293382 1_4:-20990246 None:intergenic
TGAGAAGAGGCAAATAAGAT+TGG 0.357215 1_4:+20988371 Msa0155540:five_prime_UTR
CAAAGAGATTTCCATTTGTA+AGG 0.365050 1_4:-20990571 None:intergenic
ATCTCCAGTACAAGAGAGTT+TGG 0.396333 1_4:+20990275 Msa0155540:CDS
AAGAGAGTTTGGTGGGAAGC+TGG 0.407615 1_4:+20990286 Msa0155540:CDS
CTAGCAACAATTGGTTGAAA+AGG 0.417846 1_4:-20988719 None:intergenic
CTTTGTCTTATGGTTTGAAA+AGG 0.427226 1_4:-20990236 None:intergenic
GTTTGAAAAGGATACTTTGT+TGG 0.430284 1_4:-20990224 None:intergenic
AATAACTTACTAGCAACAAT+TGG 0.433902 1_4:-20988728 None:intergenic
ATTCAAAGTCTTCATTATGA+AGG 0.438728 1_4:-20990601 None:intergenic
GTTTGATTTCTTTCCGGTGA+AGG 0.440508 1_4:-20990197 None:intergenic
GAGAAGAGGCAAATAAGATT+GGG 0.441444 1_4:+20988372 Msa0155540:five_prime_UTR
TATGTCATGAACCTTACAAA+TGG 0.454496 1_4:+20990560 Msa0155540:three_prime_UTR
TCACCGGAAAGAAATCAAAC+AGG 0.457839 1_4:+20990200 Msa0155540:CDS
AAAGCTTCGTTTGTCAACTA+AGG 0.463346 1_4:+20990321 Msa0155540:CDS
TTAAAGAAAATAATATTTGA+AGG 0.467368 1_4:+20988323 None:intergenic
AAATAATATTTGAAGGGTCG+TGG 0.469175 1_4:+20988330 Msa0155540:five_prime_UTR
TGAAAAGGAGAAGCAACAAT+TGG 0.492986 1_4:-20988704 None:intergenic
CCCACCAAACTCTCTTGTAC+TGG 0.493476 1_4:-20990279 None:intergenic
TTTGATTTCTTTCCGGTGAA+GGG 0.493506 1_4:-20990196 None:intergenic
TGAAGAGGGTTTGTGAGTGT+TGG 0.509301 1_4:-20988485 None:intergenic
TTCAAAGTCTTCATTATGAA+GGG 0.513570 1_4:-20990600 None:intergenic
AGAGAGTTTGGTGGGAAGCT+GGG 0.527154 1_4:+20990287 Msa0155540:CDS
TTGAAAACCATAGAGAAGAA+TGG 0.536514 1_4:+20990346 Msa0155540:CDS
GAGAGAGTGTGTCCCTTCAC+CGG 0.545165 1_4:+20990184 Msa0155540:intron
TTACGGGGTGAGAATGAAGA+GGG 0.545764 1_4:-20988499 None:intergenic
GAAGAAGAAAGAACAATGGC+GGG 0.548186 1_4:+20988403 Msa0155540:exon
AGAGGCAAATAAGATTGGGT+TGG 0.549434 1_4:+20988376 Msa0155540:five_prime_UTR
TAAAGAAAATAATATTTGAA+GGG 0.557238 1_4:+20988324 None:intergenic
GCGGGTTCTGCAGTATCACT+TGG 0.558417 1_4:+20988421 Msa0155540:CDS
AATAATATTTGAAGGGTCGT+GGG 0.560559 1_4:+20988331 Msa0155540:five_prime_UTR
CCAGTACAAGAGAGTTTGGT+GGG 0.561288 1_4:+20990279 Msa0155540:CDS
TTCTTGAGTTCTCAGTTAAG+CGG 0.574373 1_4:+20988641 Msa0155540:CDS
GTTACGGGGTGAGAATGAAG+AGG 0.589375 1_4:-20988500 None:intergenic
ACAGGAGTTGATTCTGACTA+CGG 0.589928 1_4:+20990514 Msa0155540:three_prime_UTR
CAATAACATAATTTGAGAAG+AGG 0.591525 1_4:+20988358 Msa0155540:five_prime_UTR
TCAAAGTCTTCATTATGAAG+GGG 0.615498 1_4:-20990599 None:intergenic
AATATTTGAAGGGTCGTGGG+TGG 0.615951 1_4:+20988334 Msa0155540:five_prime_UTR
GGAGAAGCAACAATTGGTGA+GGG 0.617414 1_4:-20988698 None:intergenic
AGAAGAAGAAAGAACAATGG+CGG 0.618264 1_4:+20988402 Msa0155540:exon
AGGAGAAGCAACAATTGGTG+AGG 0.627644 1_4:-20988699 None:intergenic
TCCAGTACAAGAGAGTTTGG+TGG 0.629835 1_4:+20990278 Msa0155540:CDS
CACCGGAAAGAAATCAAACA+GGG 0.654830 1_4:+20990201 Msa0155540:CDS
ATAAGAAGAAGAAAGAACAA+TGG 0.678608 1_4:+20988399 Msa0155540:exon
GCGCATAGAAGCGAAGACGA+AGG 0.687146 1_4:-20988449 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATAAAAATAAAAAAGAA+CGG - chr1_4:20988849-20988868 None:intergenic 10.0%
!! ATTTACAATAATAATAATCA+GGG - chr1_4:20990128-20990147 None:intergenic 10.0%
!!! TTTCTTTATGTATTATTTTT+AGG + chr1_4:20990490-20990509 Msa0155540:three_prime_UTR 10.0%
!!! TTCTTTATGTATTATTTTTA+GGG + chr1_4:20990491-20990510 Msa0155540:three_prime_UTR 10.0%
!! ACAATAAAAATAAAAAAGAA+CGG - chr1_4:20988849-20988868 None:intergenic 10.0%
!! ATTTACAATAATAATAATCA+GGG - chr1_4:20990128-20990147 None:intergenic 10.0%
!!! TTTCTTTATGTATTATTTTT+AGG + chr1_4:20990490-20990509 Msa0155540:three_prime_UTR 10.0%
!!! TTCTTTATGTATTATTTTTA+GGG + chr1_4:20990491-20990510 Msa0155540:three_prime_UTR 10.0%
!!! CATTTTTTTGAAATTATTAC+CGG - chr1_4:20989008-20989027 None:intergenic 15.0%
!!! TAGCTCTAATTTTAATAAAA+TGG + chr1_4:20989110-20989129 Msa0155540:intron 15.0%
!!! CTTTTATTTTCATAACAATA+GGG + chr1_4:20989452-20989471 Msa0155540:intron 15.0%
!!! AAAAAATAACATATTTCTGT+TGG + chr1_4:20989630-20989649 Msa0155540:intron 15.0%
!!! TATTTTTTCGTATTTTATTG+CGG + chr1_4:20989661-20989680 Msa0155540:intron 15.0%
!! TAAATGATTAGTGTTAAAAA+TGG + chr1_4:20989918-20989937 Msa0155540:intron 15.0%
!! AAATGATTAGTGTTAAAAAT+GGG + chr1_4:20989919-20989938 Msa0155540:intron 15.0%
!!! TCCATTAAATAATAAGTTTT+TGG + chr1_4:20989998-20990017 Msa0155540:intron 15.0%
!! GATTTACAATAATAATAATC+AGG - chr1_4:20990129-20990148 None:intergenic 15.0%
!! TATTGTAAATCAATTTAACT+TGG + chr1_4:20990138-20990157 Msa0155540:intron 15.0%
!!! CATTTTTTTGAAATTATTAC+CGG - chr1_4:20989008-20989027 None:intergenic 15.0%
!!! TAGCTCTAATTTTAATAAAA+TGG + chr1_4:20989110-20989129 Msa0155540:intron 15.0%
!!! CTTTTATTTTCATAACAATA+GGG + chr1_4:20989452-20989471 Msa0155540:intron 15.0%
!!! AAAAAATAACATATTTCTGT+TGG + chr1_4:20989630-20989649 Msa0155540:intron 15.0%
!!! TATTTTTTCGTATTTTATTG+CGG + chr1_4:20989661-20989680 Msa0155540:intron 15.0%
!! TAAATGATTAGTGTTAAAAA+TGG + chr1_4:20989918-20989937 Msa0155540:intron 15.0%
!! AAATGATTAGTGTTAAAAAT+GGG + chr1_4:20989919-20989938 Msa0155540:intron 15.0%
!!! TCCATTAAATAATAAGTTTT+TGG + chr1_4:20989998-20990017 Msa0155540:intron 15.0%
!! GATTTACAATAATAATAATC+AGG - chr1_4:20990129-20990148 None:intergenic 15.0%
!! TATTGTAAATCAATTTAACT+TGG + chr1_4:20990138-20990157 Msa0155540:intron 15.0%
!!! ATTTTTGTGATTTCAGAATT+AGG + chr1_4:20988617-20988636 Msa0155540:intron 20.0%
!!! TTTTTGTGATTTCAGAATTA+GGG + chr1_4:20988618-20988637 Msa0155540:intron 20.0%
!! CGGTAATAATTTCAAAAAAA+TGG + chr1_4:20989006-20989025 Msa0155540:intron 20.0%
!! AAGGAATGTTACAATATTTA+AGG + chr1_4:20989427-20989446 Msa0155540:intron 20.0%
!! CCTATTGTTATGAAAATAAA+AGG - chr1_4:20989454-20989473 None:intergenic 20.0%
!!! CCTTTTATTTTCATAACAAT+AGG + chr1_4:20989451-20989470 Msa0155540:intron 20.0%
!! CAAAAAAGAACTATTACAAT+AGG - chr1_4:20989763-20989782 None:intergenic 20.0%
!! AATGATTAGTGTTAAAAATG+GGG + chr1_4:20989920-20989939 Msa0155540:intron 20.0%
!! GCCAAAAACTTATTATTTAA+TGG - chr1_4:20990002-20990021 None:intergenic 20.0%
!!! AACCAAATATGTGTATTTTT+GGG - chr1_4:20990051-20990070 None:intergenic 20.0%
!!! TAACCAAATATGTGTATTTT+TGG - chr1_4:20990052-20990071 None:intergenic 20.0%
!! TATGATTGTAATTGAGTAAA+AGG + chr1_4:20990429-20990448 Msa0155540:three_prime_UTR 20.0%
!! ACAACAAAAATTAATGAACA+TGG - chr1_4:20990461-20990480 None:intergenic 20.0%
!!! ATTTTTGTGATTTCAGAATT+AGG + chr1_4:20988617-20988636 Msa0155540:intron 20.0%
!!! TTTTTGTGATTTCAGAATTA+GGG + chr1_4:20988618-20988637 Msa0155540:intron 20.0%
!! CGGTAATAATTTCAAAAAAA+TGG + chr1_4:20989006-20989025 Msa0155540:intron 20.0%
!! AAGGAATGTTACAATATTTA+AGG + chr1_4:20989427-20989446 Msa0155540:intron 20.0%
!! CCTATTGTTATGAAAATAAA+AGG - chr1_4:20989454-20989473 None:intergenic 20.0%
!!! CCTTTTATTTTCATAACAAT+AGG + chr1_4:20989451-20989470 Msa0155540:intron 20.0%
!! CAAAAAAGAACTATTACAAT+AGG - chr1_4:20989763-20989782 None:intergenic 20.0%
!! AATGATTAGTGTTAAAAATG+GGG + chr1_4:20989920-20989939 Msa0155540:intron 20.0%
!! GCCAAAAACTTATTATTTAA+TGG - chr1_4:20990002-20990021 None:intergenic 20.0%
!!! AACCAAATATGTGTATTTTT+GGG - chr1_4:20990051-20990070 None:intergenic 20.0%
!!! TAACCAAATATGTGTATTTT+TGG - chr1_4:20990052-20990071 None:intergenic 20.0%
!! TATGATTGTAATTGAGTAAA+AGG + chr1_4:20990429-20990448 Msa0155540:three_prime_UTR 20.0%
!! ACAACAAAAATTAATGAACA+TGG - chr1_4:20990461-20990480 None:intergenic 20.0%
! CAATAACATAATTTGAGAAG+AGG + chr1_4:20988358-20988377 Msa0155540:five_prime_UTR 25.0%
! ATAAGAAGAAGAAAGAACAA+TGG + chr1_4:20988399-20988418 Msa0155540:exon 25.0%
! TTAGTTAGTTAGTTAGTTAC+GGG - chr1_4:20988518-20988537 None:intergenic 25.0%
! GTTAGTTAGTTAGTTAGTTA+CGG - chr1_4:20988519-20988538 None:intergenic 25.0%
! AATAACTTACTAGCAACAAT+TGG - chr1_4:20988731-20988750 None:intergenic 25.0%
! TAACACATCTACAAAAAACA+AGG - chr1_4:20989350-20989369 None:intergenic 25.0%
!! ATTTTCATAACAATAGGGAT+AGG + chr1_4:20989457-20989476 Msa0155540:intron 25.0%
!! TGATTTTGTCAAGTTATTAG+TGG - chr1_4:20989507-20989526 None:intergenic 25.0%
! AACATATGTTCTATACAAAC+AGG - chr1_4:20989881-20989900 None:intergenic 25.0%
! GTTTGTATAGAACATATGTT+AGG + chr1_4:20989881-20989900 Msa0155540:intron 25.0%
!!! TATGTATTATTTTTAGGGAC+AGG + chr1_4:20990496-20990515 Msa0155540:three_prime_UTR 25.0%
! TTCAAAGTCTTCATTATGAA+GGG - chr1_4:20990603-20990622 None:intergenic 25.0%
! ATTCAAAGTCTTCATTATGA+AGG - chr1_4:20990604-20990623 None:intergenic 25.0%
! CAATAACATAATTTGAGAAG+AGG + chr1_4:20988358-20988377 Msa0155540:five_prime_UTR 25.0%
! ATAAGAAGAAGAAAGAACAA+TGG + chr1_4:20988399-20988418 Msa0155540:exon 25.0%
! TTAGTTAGTTAGTTAGTTAC+GGG - chr1_4:20988518-20988537 None:intergenic 25.0%
! GTTAGTTAGTTAGTTAGTTA+CGG - chr1_4:20988519-20988538 None:intergenic 25.0%
! AATAACTTACTAGCAACAAT+TGG - chr1_4:20988731-20988750 None:intergenic 25.0%
! TAACACATCTACAAAAAACA+AGG - chr1_4:20989350-20989369 None:intergenic 25.0%
!! ATTTTCATAACAATAGGGAT+AGG + chr1_4:20989457-20989476 Msa0155540:intron 25.0%
!! TGATTTTGTCAAGTTATTAG+TGG - chr1_4:20989507-20989526 None:intergenic 25.0%
! AACATATGTTCTATACAAAC+AGG - chr1_4:20989881-20989900 None:intergenic 25.0%
! GTTTGTATAGAACATATGTT+AGG + chr1_4:20989881-20989900 Msa0155540:intron 25.0%
!!! TATGTATTATTTTTAGGGAC+AGG + chr1_4:20990496-20990515 Msa0155540:three_prime_UTR 25.0%
! TTCAAAGTCTTCATTATGAA+GGG - chr1_4:20990603-20990622 None:intergenic 25.0%
! ATTCAAAGTCTTCATTATGA+AGG - chr1_4:20990604-20990623 None:intergenic 25.0%
AAATAATATTTGAAGGGTCG+TGG + chr1_4:20988330-20988349 Msa0155540:five_prime_UTR 30.0%
AATAATATTTGAAGGGTCGT+GGG + chr1_4:20988331-20988350 Msa0155540:five_prime_UTR 30.0%
TAGTTAGTTAGTTAGTTACG+GGG - chr1_4:20988517-20988536 None:intergenic 30.0%
! TCAGAGTGAATATCGATTAT+TGG - chr1_4:20988758-20988777 None:intergenic 30.0%
AAATGTTATTGATGTTGTGC+CGG + chr1_4:20989037-20989056 Msa0155540:intron 30.0%
AAGGAACTATTGCATAAAGA+CGG - chr1_4:20989331-20989350 None:intergenic 30.0%
! TTCAGTCTGAAGTATATTAG+AGG + chr1_4:20989398-20989417 Msa0155540:intron 30.0%
! TCTGAAGTATATTAGAGGAT+AGG + chr1_4:20989403-20989422 Msa0155540:intron 30.0%
AGTATATTAGAGGATAGGAA+AGG + chr1_4:20989408-20989427 Msa0155540:intron 30.0%
TGCTTAAGAAACTCAGTTAT+AGG - chr1_4:20989834-20989853 None:intergenic 30.0%
CACCCAAAAATACACATATT+TGG + chr1_4:20990046-20990065 Msa0155540:intron 30.0%
TAGACACTAATGATGTAGTT+TGG - chr1_4:20990088-20990107 None:intergenic 30.0%
ACTACATCATTAGTGTCTAA+AGG + chr1_4:20990089-20990108 Msa0155540:intron 30.0%
!! CAATTTAACTTGGTGTACTT+TGG + chr1_4:20990148-20990167 Msa0155540:intron 30.0%
GTTTGAAAAGGATACTTTGT+TGG - chr1_4:20990227-20990246 None:intergenic 30.0%
CTTTGTCTTATGGTTTGAAA+AGG - chr1_4:20990239-20990258 None:intergenic 30.0%
TTGAAAACCATAGAGAAGAA+TGG + chr1_4:20990346-20990365 Msa0155540:CDS 30.0%
TATGTCATGAACCTTACAAA+TGG + chr1_4:20990560-20990579 Msa0155540:three_prime_UTR 30.0%
CAAAGAGATTTCCATTTGTA+AGG - chr1_4:20990574-20990593 None:intergenic 30.0%
TCAAAGTCTTCATTATGAAG+GGG - chr1_4:20990602-20990621 None:intergenic 30.0%
AAATAATATTTGAAGGGTCG+TGG + chr1_4:20988330-20988349 Msa0155540:five_prime_UTR 30.0%
AATAATATTTGAAGGGTCGT+GGG + chr1_4:20988331-20988350 Msa0155540:five_prime_UTR 30.0%
TAGTTAGTTAGTTAGTTACG+GGG - chr1_4:20988517-20988536 None:intergenic 30.0%
! TCAGAGTGAATATCGATTAT+TGG - chr1_4:20988758-20988777 None:intergenic 30.0%
AAATGTTATTGATGTTGTGC+CGG + chr1_4:20989037-20989056 Msa0155540:intron 30.0%
AAGGAACTATTGCATAAAGA+CGG - chr1_4:20989331-20989350 None:intergenic 30.0%
! TTCAGTCTGAAGTATATTAG+AGG + chr1_4:20989398-20989417 Msa0155540:intron 30.0%
! TCTGAAGTATATTAGAGGAT+AGG + chr1_4:20989403-20989422 Msa0155540:intron 30.0%
AGTATATTAGAGGATAGGAA+AGG + chr1_4:20989408-20989427 Msa0155540:intron 30.0%
TGCTTAAGAAACTCAGTTAT+AGG - chr1_4:20989834-20989853 None:intergenic 30.0%
CACCCAAAAATACACATATT+TGG + chr1_4:20990046-20990065 Msa0155540:intron 30.0%
TAGACACTAATGATGTAGTT+TGG - chr1_4:20990088-20990107 None:intergenic 30.0%
ACTACATCATTAGTGTCTAA+AGG + chr1_4:20990089-20990108 Msa0155540:intron 30.0%
!! CAATTTAACTTGGTGTACTT+TGG + chr1_4:20990148-20990167 Msa0155540:intron 30.0%
GTTTGAAAAGGATACTTTGT+TGG - chr1_4:20990227-20990246 None:intergenic 30.0%
CTTTGTCTTATGGTTTGAAA+AGG - chr1_4:20990239-20990258 None:intergenic 30.0%
TTGAAAACCATAGAGAAGAA+TGG + chr1_4:20990346-20990365 Msa0155540:CDS 30.0%
TATGTCATGAACCTTACAAA+TGG + chr1_4:20990560-20990579 Msa0155540:three_prime_UTR 30.0%
CAAAGAGATTTCCATTTGTA+AGG - chr1_4:20990574-20990593 None:intergenic 30.0%
TCAAAGTCTTCATTATGAAG+GGG - chr1_4:20990602-20990621 None:intergenic 30.0%
TGAGAAGAGGCAAATAAGAT+TGG + chr1_4:20988371-20988390 Msa0155540:five_prime_UTR 35.0%
GAGAAGAGGCAAATAAGATT+GGG + chr1_4:20988372-20988391 Msa0155540:five_prime_UTR 35.0%
AGAAGAAGAAAGAACAATGG+CGG + chr1_4:20988402-20988421 Msa0155540:exon 35.0%
TTCTTGAGTTCTCAGTTAAG+CGG + chr1_4:20988641-20988660 Msa0155540:CDS 35.0%
TGAAAAGGAGAAGCAACAAT+TGG - chr1_4:20988707-20988726 None:intergenic 35.0%
CTAGCAACAATTGGTTGAAA+AGG - chr1_4:20988722-20988741 None:intergenic 35.0%
GTATATCGCAATCAGATTAG+AGG - chr1_4:20988893-20988912 None:intergenic 35.0%
TGACAATGACATGTAAACAC+CGG + chr1_4:20988986-20989005 Msa0155540:intron 35.0%
!! CATACTAGTTTGTTTCTTGC+AGG + chr1_4:20989228-20989247 Msa0155540:intron 35.0%
CATAACAATAGGGATAGGAA+AGG + chr1_4:20989462-20989481 Msa0155540:intron 35.0%
TGTCAAGTTATTAGTGGTGT+CGG - chr1_4:20989501-20989520 None:intergenic 35.0%
! ATGTGTCACTCTATGAAAGT+TGG - chr1_4:20989715-20989734 None:intergenic 35.0%
ATACCCTTCCTAGTTTATGT+TGG + chr1_4:20989737-20989756 Msa0155540:intron 35.0%
ACAATAGGCCAACATAAACT+AGG - chr1_4:20989748-20989767 None:intergenic 35.0%
ATAAGAGAACATGCATGACA+TGG + chr1_4:20989794-20989813 Msa0155540:intron 35.0%
! AGTTTAAGACCTCTTTGCAT+AGG + chr1_4:20989953-20989972 Msa0155540:intron 35.0%
ACATTATGTCCTATGCAAAG+AGG - chr1_4:20989965-20989984 None:intergenic 35.0%
! TTTGATTTCTTTCCGGTGAA+GGG - chr1_4:20990199-20990218 None:intergenic 35.0%
ACTGCAGTTTCTTTGTCTTA+TGG - chr1_4:20990249-20990268 None:intergenic 35.0%
AAAGCTTCGTTTGTCAACTA+AGG + chr1_4:20990321-20990340 Msa0155540:CDS 35.0%
ATCAAGTCCATTCTTCTCTA+TGG - chr1_4:20990356-20990375 None:intergenic 35.0%
ACTTGATGCAGTTGCAAAAA+AGG + chr1_4:20990369-20990388 Msa0155540:CDS 35.0%
TGAGAAGAGGCAAATAAGAT+TGG + chr1_4:20988371-20988390 Msa0155540:five_prime_UTR 35.0%
GAGAAGAGGCAAATAAGATT+GGG + chr1_4:20988372-20988391 Msa0155540:five_prime_UTR 35.0%
AGAAGAAGAAAGAACAATGG+CGG + chr1_4:20988402-20988421 Msa0155540:exon 35.0%
TTCTTGAGTTCTCAGTTAAG+CGG + chr1_4:20988641-20988660 Msa0155540:CDS 35.0%
TGAAAAGGAGAAGCAACAAT+TGG - chr1_4:20988707-20988726 None:intergenic 35.0%
CTAGCAACAATTGGTTGAAA+AGG - chr1_4:20988722-20988741 None:intergenic 35.0%
GTATATCGCAATCAGATTAG+AGG - chr1_4:20988893-20988912 None:intergenic 35.0%
TGACAATGACATGTAAACAC+CGG + chr1_4:20988986-20989005 Msa0155540:intron 35.0%
!! CATACTAGTTTGTTTCTTGC+AGG + chr1_4:20989228-20989247 Msa0155540:intron 35.0%
CATAACAATAGGGATAGGAA+AGG + chr1_4:20989462-20989481 Msa0155540:intron 35.0%
TGTCAAGTTATTAGTGGTGT+CGG - chr1_4:20989501-20989520 None:intergenic 35.0%
! ATGTGTCACTCTATGAAAGT+TGG - chr1_4:20989715-20989734 None:intergenic 35.0%
ATACCCTTCCTAGTTTATGT+TGG + chr1_4:20989737-20989756 Msa0155540:intron 35.0%
ACAATAGGCCAACATAAACT+AGG - chr1_4:20989748-20989767 None:intergenic 35.0%
ATAAGAGAACATGCATGACA+TGG + chr1_4:20989794-20989813 Msa0155540:intron 35.0%
! AGTTTAAGACCTCTTTGCAT+AGG + chr1_4:20989953-20989972 Msa0155540:intron 35.0%
ACATTATGTCCTATGCAAAG+AGG - chr1_4:20989965-20989984 None:intergenic 35.0%
! TTTGATTTCTTTCCGGTGAA+GGG - chr1_4:20990199-20990218 None:intergenic 35.0%
ACTGCAGTTTCTTTGTCTTA+TGG - chr1_4:20990249-20990268 None:intergenic 35.0%
AAAGCTTCGTTTGTCAACTA+AGG + chr1_4:20990321-20990340 Msa0155540:CDS 35.0%
ATCAAGTCCATTCTTCTCTA+TGG - chr1_4:20990356-20990375 None:intergenic 35.0%
ACTTGATGCAGTTGCAAAAA+AGG + chr1_4:20990369-20990388 Msa0155540:CDS 35.0%
AGAGGCAAATAAGATTGGGT+TGG + chr1_4:20988376-20988395 Msa0155540:five_prime_UTR 40.0%
GAAGAAGAAAGAACAATGGC+GGG + chr1_4:20988403-20988422 Msa0155540:exon 40.0%
! CTGTTGCTAGTTTACGTACA+TGG + chr1_4:20988959-20988978 Msa0155540:intron 40.0%
CTGATACGTGTTAGAGACAA+CGG + chr1_4:20989175-20989194 Msa0155540:intron 40.0%
TGATACGTGTTAGAGACAAC+GGG + chr1_4:20989176-20989195 Msa0155540:intron 40.0%
CAATTATATGTGTCCGACAC+CGG + chr1_4:20989539-20989558 Msa0155540:intron 40.0%
AATTATATGTGTCCGACACC+GGG + chr1_4:20989540-20989559 Msa0155540:intron 40.0%
CCATAGTCAGCTATTAAGCA+CGG - chr1_4:20989588-20989607 None:intergenic 40.0%
TTATTGCGGACAGAAGAGTT+TGG + chr1_4:20989675-20989694 Msa0155540:intron 40.0%
AGGCCAACATAAACTAGGAA+GGG - chr1_4:20989743-20989762 None:intergenic 40.0%
TAGGCCAACATAAACTAGGA+AGG - chr1_4:20989744-20989763 None:intergenic 40.0%
CTCTTAGCTAGAGATACCAT+GGG + chr1_4:20990021-20990040 Msa0155540:intron 40.0%
!!! TGTATTTTTGGGTGAACCCA+TGG - chr1_4:20990040-20990059 None:intergenic 40.0%
! GTTTGATTTCTTTCCGGTGA+AGG - chr1_4:20990200-20990219 None:intergenic 40.0%
TCACCGGAAAGAAATCAAAC+AGG + chr1_4:20990200-20990219 Msa0155540:CDS 40.0%
CACCGGAAAGAAATCAAACA+GGG + chr1_4:20990201-20990220 Msa0155540:CDS 40.0%
ATCTCCAGTACAAGAGAGTT+TGG + chr1_4:20990275-20990294 Msa0155540:CDS 40.0%
! ACAGGAGTTGATTCTGACTA+CGG + chr1_4:20990514-20990533 Msa0155540:three_prime_UTR 40.0%
AGAGGCAAATAAGATTGGGT+TGG + chr1_4:20988376-20988395 Msa0155540:five_prime_UTR 40.0%
GAAGAAGAAAGAACAATGGC+GGG + chr1_4:20988403-20988422 Msa0155540:exon 40.0%
! CTGTTGCTAGTTTACGTACA+TGG + chr1_4:20988959-20988978 Msa0155540:intron 40.0%
CTGATACGTGTTAGAGACAA+CGG + chr1_4:20989175-20989194 Msa0155540:intron 40.0%
TGATACGTGTTAGAGACAAC+GGG + chr1_4:20989176-20989195 Msa0155540:intron 40.0%
CAATTATATGTGTCCGACAC+CGG + chr1_4:20989539-20989558 Msa0155540:intron 40.0%
AATTATATGTGTCCGACACC+GGG + chr1_4:20989540-20989559 Msa0155540:intron 40.0%
CCATAGTCAGCTATTAAGCA+CGG - chr1_4:20989588-20989607 None:intergenic 40.0%
TTATTGCGGACAGAAGAGTT+TGG + chr1_4:20989675-20989694 Msa0155540:intron 40.0%
AGGCCAACATAAACTAGGAA+GGG - chr1_4:20989743-20989762 None:intergenic 40.0%
TAGGCCAACATAAACTAGGA+AGG - chr1_4:20989744-20989763 None:intergenic 40.0%
CTCTTAGCTAGAGATACCAT+GGG + chr1_4:20990021-20990040 Msa0155540:intron 40.0%
!!! TGTATTTTTGGGTGAACCCA+TGG - chr1_4:20990040-20990059 None:intergenic 40.0%
! GTTTGATTTCTTTCCGGTGA+AGG - chr1_4:20990200-20990219 None:intergenic 40.0%
TCACCGGAAAGAAATCAAAC+AGG + chr1_4:20990200-20990219 Msa0155540:CDS 40.0%
CACCGGAAAGAAATCAAACA+GGG + chr1_4:20990201-20990220 Msa0155540:CDS 40.0%
ATCTCCAGTACAAGAGAGTT+TGG + chr1_4:20990275-20990294 Msa0155540:CDS 40.0%
! ACAGGAGTTGATTCTGACTA+CGG + chr1_4:20990514-20990533 Msa0155540:three_prime_UTR 40.0%
AATATTTGAAGGGTCGTGGG+TGG + chr1_4:20988334-20988353 Msa0155540:five_prime_UTR 45.0%
TGAAGAGGGTTTGTGAGTGT+TGG - chr1_4:20988488-20988507 None:intergenic 45.0%
TTACGGGGTGAGAATGAAGA+GGG - chr1_4:20988502-20988521 None:intergenic 45.0%
GGAGAAGCAACAATTGGTGA+GGG - chr1_4:20988701-20988720 None:intergenic 45.0%
AGGAGAAGCAACAATTGGTG+AGG - chr1_4:20988702-20988721 None:intergenic 45.0%
CACAAGTCAGTGTCAAACAC+CGG - chr1_4:20989059-20989078 None:intergenic 45.0%
TATTAAGCACGGACACTCCT+TGG - chr1_4:20989577-20989596 None:intergenic 45.0%
CCGTGCTTAATAGCTGACTA+TGG + chr1_4:20989585-20989604 Msa0155540:intron 45.0%
AGAACATGCATGACATGGTG+TGG + chr1_4:20989799-20989818 Msa0155540:intron 45.0%
GCTCTTAGCTAGAGATACCA+TGG + chr1_4:20990020-20990039 Msa0155540:intron 45.0%
! GGCCCTGTTTGATTTCTTTC+CGG - chr1_4:20990206-20990225 None:intergenic 45.0%
TCCAGTACAAGAGAGTTTGG+TGG + chr1_4:20990278-20990297 Msa0155540:CDS 45.0%
CCAGTACAAGAGAGTTTGGT+GGG + chr1_4:20990279-20990298 Msa0155540:CDS 45.0%
GATGCAGTTGCAAAAAAGGC+TGG + chr1_4:20990373-20990392 Msa0155540:CDS 45.0%
AATATTTGAAGGGTCGTGGG+TGG + chr1_4:20988334-20988353 Msa0155540:five_prime_UTR 45.0%
TGAAGAGGGTTTGTGAGTGT+TGG - chr1_4:20988488-20988507 None:intergenic 45.0%
TTACGGGGTGAGAATGAAGA+GGG - chr1_4:20988502-20988521 None:intergenic 45.0%
GGAGAAGCAACAATTGGTGA+GGG - chr1_4:20988701-20988720 None:intergenic 45.0%
AGGAGAAGCAACAATTGGTG+AGG - chr1_4:20988702-20988721 None:intergenic 45.0%
CACAAGTCAGTGTCAAACAC+CGG - chr1_4:20989059-20989078 None:intergenic 45.0%
TATTAAGCACGGACACTCCT+TGG - chr1_4:20989577-20989596 None:intergenic 45.0%
CCGTGCTTAATAGCTGACTA+TGG + chr1_4:20989585-20989604 Msa0155540:intron 45.0%
AGAACATGCATGACATGGTG+TGG + chr1_4:20989799-20989818 Msa0155540:intron 45.0%
GCTCTTAGCTAGAGATACCA+TGG + chr1_4:20990020-20990039 Msa0155540:intron 45.0%
! GGCCCTGTTTGATTTCTTTC+CGG - chr1_4:20990206-20990225 None:intergenic 45.0%
TCCAGTACAAGAGAGTTTGG+TGG + chr1_4:20990278-20990297 Msa0155540:CDS 45.0%
CCAGTACAAGAGAGTTTGGT+GGG + chr1_4:20990279-20990298 Msa0155540:CDS 45.0%
GATGCAGTTGCAAAAAAGGC+TGG + chr1_4:20990373-20990392 Msa0155540:CDS 45.0%
!!! TATTTTTTGAATTAAAAAAA+AGG - chr1_4:20989618-20989637 None:intergenic 5.0%
!!! TATTTTTTGAATTAAAAAAA+AGG - chr1_4:20989618-20989637 None:intergenic 5.0%
GTTACGGGGTGAGAATGAAG+AGG - chr1_4:20988503-20988522 None:intergenic 50.0%
! TCCTTGGATTAGACGTGTCC+CGG - chr1_4:20989561-20989580 None:intergenic 50.0%
CCCACCAAACTCTCTTGTAC+TGG - chr1_4:20990282-20990301 None:intergenic 50.0%
! AAGAGAGTTTGGTGGGAAGC+TGG + chr1_4:20990286-20990305 Msa0155540:CDS 50.0%
! AGAGAGTTTGGTGGGAAGCT+GGG + chr1_4:20990287-20990306 Msa0155540:CDS 50.0%
GTTACGGGGTGAGAATGAAG+AGG - chr1_4:20988503-20988522 None:intergenic 50.0%
! TCCTTGGATTAGACGTGTCC+CGG - chr1_4:20989561-20989580 None:intergenic 50.0%
CCCACCAAACTCTCTTGTAC+TGG - chr1_4:20990282-20990301 None:intergenic 50.0%
! AAGAGAGTTTGGTGGGAAGC+TGG + chr1_4:20990286-20990305 Msa0155540:CDS 50.0%
! AGAGAGTTTGGTGGGAAGCT+GGG + chr1_4:20990287-20990306 Msa0155540:CDS 50.0%
GCGGGTTCTGCAGTATCACT+TGG + chr1_4:20988421-20988440 Msa0155540:CDS 55.0%
GCGCATAGAAGCGAAGACGA+AGG - chr1_4:20988452-20988471 None:intergenic 55.0%
GATTAGACGTGTCCCGGTGT+CGG - chr1_4:20989555-20989574 None:intergenic 55.0%
ACCGGGACACGTCTAATCCA+AGG + chr1_4:20989557-20989576 Msa0155540:intron 55.0%
! GAGAGAGTGTGTCCCTTCAC+CGG + chr1_4:20990184-20990203 Msa0155540:intron 55.0%
GCGGGTTCTGCAGTATCACT+TGG + chr1_4:20988421-20988440 Msa0155540:CDS 55.0%
GCGCATAGAAGCGAAGACGA+AGG - chr1_4:20988452-20988471 None:intergenic 55.0%
GATTAGACGTGTCCCGGTGT+CGG - chr1_4:20989555-20989574 None:intergenic 55.0%
ACCGGGACACGTCTAATCCA+AGG + chr1_4:20989557-20989576 Msa0155540:intron 55.0%
! GAGAGAGTGTGTCCCTTCAC+CGG + chr1_4:20990184-20990203 Msa0155540:intron 55.0%
GCTTTGACGCGCAGGCTGTG+TGG + chr1_4:20988927-20988946 Msa0155540:intron 65.0%
GCTTTGACGCGCAGGCTGTG+TGG + chr1_4:20988927-20988946 Msa0155540:intron 65.0%
CGCGCAGGCTGTGTGGAGCA+CGG + chr1_4:20988934-20988953 Msa0155540:intron 70.0%
GCGCAGGCTGTGTGGAGCAC+GGG + chr1_4:20988935-20988954 Msa0155540:intron 70.0%
CGCGCAGGCTGTGTGGAGCA+CGG + chr1_4:20988934-20988953 Msa0155540:intron 70.0%
GCGCAGGCTGTGTGGAGCAC+GGG + chr1_4:20988935-20988954 Msa0155540:intron 70.0%
CTGCGCGCGCTTTGACGCGC+AGG + chr1_4:20988919-20988938 Msa0155540:intron 75.0%
CTGCGCGCGCTTTGACGCGC+AGG + chr1_4:20988919-20988938 Msa0155540:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 20988326 20990661 20988326 ID=Msa0155540;Name=Msa0155540
chr1_4 mRNA 20988326 20990661 20988326 ID=Msa0155540-mRNA-1;Parent=Msa0155540;Name=Msa0155540-mRNA-1;_AED=0.02;_eAED=0.02;_QI=92|1|1|1|1|1|3|244|146
chr1_4 exon 20988326 20988517 20988326 ID=Msa0155540-mRNA-1:exon:7584;Parent=Msa0155540-mRNA-1
chr1_4 exon 20988633 20988740 20988633 ID=Msa0155540-mRNA-1:exon:7585;Parent=Msa0155540-mRNA-1
chr1_4 exon 20990185 20990661 20990185 ID=Msa0155540-mRNA-1:exon:7586;Parent=Msa0155540-mRNA-1
chr1_4 five_prime_UTR 20988326 20988417 20988326 ID=Msa0155540-mRNA-1:five_prime_utr;Parent=Msa0155540-mRNA-1
chr1_4 CDS 20988418 20988517 20988418 ID=Msa0155540-mRNA-1:cds;Parent=Msa0155540-mRNA-1
chr1_4 CDS 20988633 20988740 20988633 ID=Msa0155540-mRNA-1:cds;Parent=Msa0155540-mRNA-1
chr1_4 CDS 20990185 20990417 20990185 ID=Msa0155540-mRNA-1:cds;Parent=Msa0155540-mRNA-1
chr1_4 three_prime_UTR 20990418 20990661 20990418 ID=Msa0155540-mRNA-1:three_prime_utr;Parent=Msa0155540-mRNA-1
Gene Sequence

>Msa0155540

ATGGCGGGTTCTGCAGTATCACTTGGAAACACCTTCGTCTTCGCTTCTATGCGCACAATCTCATCAACCAACACTCACAAACCCTCTTCATTCTCACCCCAATTAGGGTTCTTGAGTTCTCAGTTAAGCGGTCTCAAAATCTCGTCTCAGACTTCGATTAAATTGCCCTCACCAATTGTTGCTTCTCCTTTTCAACCAATTGTTGCTAAGAGAGTGTGTCCCTTCACCGGAAAGAAATCAAACAGGGCCAACAAAGTATCCTTTTCAAACCATAAGACAAAGAAACTGCAGTTCGTAAATCTCCAGTACAAGAGAGTTTGGTGGGAAGCTGGGAAGCGTTATGTAAAGCTTCGTTTGTCAACTAAGGCGTTGAAAACCATAGAGAAGAATGGACTTGATGCAGTTGCAAAAAAGGCTGGAATTGATCTCAGTAAGAAATGA

Protein sequence

>Msa0155540

MAGSAVSLGNTFVFASMRTISSTNTHKPSSFSPQLGFLSSQLSGLKISSQTSIKLPSPIVASPFQPIVAKRVCPFTGKKSNRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLSKK*