AlfalfaGEDB | Msa0605370

M. sativa cultivar zhongmu-4 / Msa0605370

KEGG: K03809
GO: -
PFAM: PF03358.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0605370	XP_013456379.1	95.041	242	6	1	1	242	1	236	3.24e-165	466

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0605370	sp\|O23207\|FQRL2_ARATH	65.504	258	73	2	1	242	1	258	2.14e-113	329

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0605370	A0A072UX31	95.041	242	6	1	1	242	1	236	1.55e-165	466

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0061500	Msa0605370	0.805010	1.641147e-49	-8.615850e-47
Msa0078640	Msa0605370	0.831782	1.373403e-55	-8.615850e-47
Msa0092410	Msa0605370	0.805902	1.066904e-49	-8.615850e-47
Msa0105410	Msa0605370	0.808451	3.077631e-50	-8.615850e-47
Msa0172080	Msa0605370	0.803839	2.877640e-49	-8.615850e-47
Msa0187830	Msa0605370	0.802621	5.144044e-49	-8.615850e-47
Msa0217700	Msa0605370	0.805261	1.453956e-49	-8.615850e-47
Msa0227340	Msa0605370	0.830565	2.733831e-55	-8.615850e-47
Msa0264830	Msa0605370	0.834663	2.630640e-56	-8.615850e-47
Msa0267790	Msa0605370	0.822007	2.982847e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0605370	MtrunA17_Chr4g0034601	95.041	242	6	1	1	242	1	236	2.98e-169	466
Msa0605370	MtrunA17_Chr5g0403681	66.255	243	75	2	1	242	1	237	5.47e-114	327
Msa0605370	MtrunA17_Chr8g0361451	69.022	184	56	1	57	240	3	185	6.45e-88	259
Msa0605370	MtrunA17_Chr2g0318961	69.565	184	55	1	57	240	3	185	9.45e-88	258
Msa0605370	MtrunA17_Chr5g0429671	64.865	185	65	0	58	242	5	189	3.52e-86	254
Msa0605370	MtrunA17_Chr4g0048841	65.746	181	61	1	60	240	41	220	1.33e-80	241
Msa0605370	MtrunA17_Chr2g0280641	61.202	183	70	1	58	240	4	185	4.87e-75	226
Msa0605370	MtrunA17_Chr8g0361461	72.449	98	27	0	140	237	2	99	3.91e-46	149
Msa0605370	MtrunA17_Chr4g0048831	68.317	101	28	1	140	240	2	98	9.46e-44	143

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0605370	AT4G36750.1	65.504	258	73	2	1	242	1	258	2.17e-114	329
Msa0605370	AT4G27270.1	68.852	183	56	1	58	240	4	185	4.56e-89	262
Msa0605370	AT5G54500.1	68.852	183	56	1	58	240	4	185	7.76e-87	256
Msa0605370	AT4G27270.3	68.000	175	55	1	66	240	1	174	3.96e-83	246
Msa0605370	AT4G27270.2	68.000	175	55	1	66	240	1	174	3.96e-83	246
Msa0605370	AT5G58800.1	58.378	185	77	0	58	242	5	189	9.74e-78	233
Msa0605370	AT5G58800.2	58.378	185	77	0	58	242	5	189	9.74e-78	233
Msa0605370	AT5G54500.2	66.250	160	53	1	58	217	4	162	1.09e-71	219
Msa0605370	AT4G27270.4	71.111	135	38	1	106	240	1	134	1.18e-65	201

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Find 81 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGGTTGATTCTGTTGA+TGG	0.375228	4_2:-51179329	Msa0605370:CDS
AAATTCTCAGCAGATATCAA+AGG	0.642913	4_2:+51179218	None:intergenic
AACAAATGTTGGATTTATGA+AGG	0.414289	4_2:+51179753	None:intergenic
AAGACAGAGAGGTGGGTGGG+TGG	0.571460	4_2:+51179840	None:intergenic
AAGCTTGCTGGTGTTCCTGC+TGG	0.298841	4_2:-51179089	Msa0605370:CDS
AATCTTGTTGTGTTTATTGT+TGG	0.373601	4_2:-51177261	Msa0605370:three_prime_UTR
ACAAGCAACTGAAGCTGAGT+TGG	0.528852	4_2:-51177405	Msa0605370:CDS
AGAATTTGGTGGAGGCTGAT+GGG	0.527716	4_2:-51179202	Msa0605370:CDS
AGATGTAGCAACAATAGATG+TGG	0.630772	4_2:-51179447	Msa0605370:CDS
AGCACCTGAGAAAGATGATG+AGG	0.634435	4_2:-51179243	Msa0605370:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCAAAATTTCAATGGGGAA+AGG	-	chr4_2:51177440-51177459	Msa0605370:CDS	30.0%
TTGTTTCATTCTGTGGAATT+TGG	+	chr4_2:51177535-51177554	None:intergenic	30.0%
TTATTCAATGTATGGTCATG+TGG	-	chr4_2:51177640-51177659	Msa0605370:intron	30.0%
TTGGCAAGATCATTGAAAAA+AGG	-	chr4_2:51177668-51177687	Msa0605370:intron	30.0%
TGGCAAGATCATTGAAAAAA+GGG	-	chr4_2:51177669-51177688	Msa0605370:intron	30.0%
AAATTCTCAGCAGATATCAA+AGG	+	chr4_2:51177800-51177819	None:intergenic	30.0%
TTTGATATCTGCTGAGAATT+TGG	-	chr4_2:51177799-51177818	Msa0605370:intron	30.0%
CACTGTTATTACGAGTAATA+AGG	-	chr4_2:51178199-51178218	Msa0605370:intron	30.0%
TTACGAGTAATAAGGTGATT+TGG	-	chr4_2:51178207-51178226	Msa0605370:intron	30.0%
TAACATTAATCCTAAAGTCG+AGG	+	chr4_2:51178438-51178457	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	51177106	51179931	51177106	ID=Msa0605370;Name=Msa0605370
chr4_2	mRNA	51177106	51179931	51177106	ID=Msa0605370-mRNA-1;Parent=Msa0605370;Name=Msa0605370-mRNA-1;_AED=0.00;_eAED=0.00;_QI=346\|1\|1\|1\|1\|1\|2\|282\|242
chr4_2	exon	51177106	51177571	51177106	ID=Msa0605370-mRNA-1:exon:12216;Parent=Msa0605370-mRNA-1
chr4_2	exon	51179041	51179931	51179041	ID=Msa0605370-mRNA-1:exon:12215;Parent=Msa0605370-mRNA-1
chr4_2	five_prime_UTR	51179586	51179931	51179586	ID=Msa0605370-mRNA-1:five_prime_utr;Parent=Msa0605370-mRNA-1
chr4_2	CDS	51179041	51179585	51179041	ID=Msa0605370-mRNA-1:cds;Parent=Msa0605370-mRNA-1
chr4_2	CDS	51177388	51177571	51177388	ID=Msa0605370-mRNA-1:cds;Parent=Msa0605370-mRNA-1
chr4_2	three_prime_UTR	51177106	51177387	51177106	ID=Msa0605370-mRNA-1:three_prime_utr;Parent=Msa0605370-mRNA-1

Gene Sequence

>Msa0605370

ATGGGGAAAGGAAGAGGTTGCATACCAAGCAAGAAAAAAGCACCAACTACAGAAGAGAATGAACCTCTTAGTGTTGAAAGCCAAATTCCACAGAATGAAACAACAAGTAGAAGCATAGATGTAGCAACAATAGATGTGGCAACAACATCAGAAGAAGCAGTGAAAAAGCTCAAAGTTTACATTGTTTTTTATTCAATGTATGGTCATGTGGAATCATTGGCAAGATCATTGAAAAAAGGGGTTGATTCTGTTGATGGAGTTGAAGGGTTTTTGTACCGTGTCGTAGAGACGCTGCCAAAGGAAGTGTTGGAACTAATGAAAGCACCTGAGAAAGATGATGAGGTTCCTTTGATATCTGCTGAGAATTTGGTGGAGGCTGATGGGTTGTTGTTTGGGTTTCCGACGAGGTTTGGTAGTATGGCGGCACAGATGAAGGGACTTTTCGATTCCACGGGGCAGTTGTGGAAGGAACAGAAGCTTGCTGGTGTTCCTGCTGGGTTTTTTGTTAGCACTGGTACTCAAGGTGGTGGCCAAGAAACTACAGCCTGGACAGCAATAACACAATTAGTCCACCATGGAATGCTCTATGTTCCTATTGGATATACTTTTGGTGCTGGAATGTTTGAAATGGACTCAATTAGAGGTGGATCTCCATATGGTGCTGGAACCTATGCAGGAGATGGTTCAAGACAAGCAACTGAAGCTGAGTTGGCACTTGCTGAGTATTAA

Protein sequence

>Msa0605370

MGKGRGCIPSKKKAPTTEENEPLSVESQIPQNETTSRSIDVATIDVATTSEEAVKKLKVYIVFYSMYGHVESLARSLKKGVDSVDGVEGFLYRVVETLPKEVLELMKAPEKDDEVPLISAENLVEADGLLFGFPTRFGSMAAQMKGLFDSTGQLWKEQKLAGVPAGFFVSTGTQGGGQETTAWTAITQLVHHGMLYVPIGYTFGAGMFEMDSIRGGSPYGAGTYAGDGSRQATEAELALAEY*