AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0555190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0555190 MtrunA17_Chr4g0041011 97.534 365 9 0 1 365 1 365 0.0 754
Msa0555190 MtrunA17_Chr2g0325481 79.439 321 66 0 43 363 46 366 0.0 563
Msa0555190 MtrunA17_Chr2g0283581 58.708 356 141 4 12 364 7 359 2.73e-153 436
Msa0555190 MtrunA17_Chr4g0045951 59.434 318 128 1 47 363 45 362 7.13e-142 407
Msa0555190 MtrunA17_Chr4g0045941 57.944 321 134 1 44 363 30 350 2.80e-139 400
Msa0555190 MtrunA17_Chr3g0097891 55.625 320 139 2 47 363 31 350 8.08e-135 388
Msa0555190 MtrunA17_Chr2g0314801 55.975 318 136 3 47 360 33 350 3.31e-131 379
Msa0555190 MtrunA17_Chr5g0413851 51.253 359 160 4 8 363 13 359 1.38e-129 375
Msa0555190 MtrunA17_Chr3g0085071 51.051 333 156 2 34 365 39 365 5.12e-128 372
Msa0555190 MtrunA17_Chr3g0091031 49.699 332 160 2 35 365 25 350 2.87e-124 361
Msa0555190 MtrunA17_Chr3g0085081 49.398 332 161 2 35 365 25 350 4.05e-123 358
Msa0555190 MtrunA17_Chr5g0430371 46.779 357 165 5 32 363 43 399 3.91e-118 348
Msa0555190 MtrunA17_Chr3g0105301 48.955 335 154 4 46 363 42 376 4.85e-116 342
Msa0555190 MtrunA17_Chr2g0314791 47.401 327 152 6 47 363 29 345 9.26e-105 311
Msa0555190 MtrunA17_Chr1g0171171 39.881 336 180 7 42 363 48 375 2.40e-87 268
Msa0555190 MtrunA17_Chr1g0175671 38.315 368 200 6 20 363 145 509 4.90e-87 272
Msa0555190 MtrunA17_Chr7g0258851 39.296 341 182 6 47 363 248 587 2.15e-85 270
Msa0555190 MtrunA17_Chr1g0210771 38.024 334 180 9 47 363 59 382 5.28e-83 257
Msa0555190 MtrunA17_Chr4g0071391 33.151 365 220 7 21 363 84 446 3.26e-80 252
Msa0555190 MtrunA17_Chr4g0068111 37.644 348 190 8 41 363 108 453 8.00e-80 252
Msa0555190 MtrunA17_Chr5g0437291 38.040 347 185 9 47 363 165 511 1.72e-79 252
Msa0555190 MtrunA17_Chr3g0113671 38.372 344 185 9 47 363 106 449 6.25e-79 249
Msa0555190 MtrunA17_Chr1g0213281 36.494 348 193 7 42 363 170 515 6.56e-79 251
Msa0555190 MtrunA17_Chr7g0269991 36.607 336 189 8 47 363 137 467 1.57e-77 246
Msa0555190 MtrunA17_Chr3g0114101 36.010 386 217 11 5 363 48 430 1.83e-75 239
Msa0555190 MtrunA17_Chr5g0437601 36.182 351 199 7 38 363 74 424 2.29e-74 236
Msa0555190 MtrunA17_Chr8g0360521 32.274 409 223 12 2 363 8 409 1.89e-73 234
Msa0555190 MtrunA17_Chr4g0006991 34.795 342 198 7 47 363 86 427 2.11e-73 234
Msa0555190 MtrunA17_Chr5g0413271 32.665 349 218 4 31 363 129 476 3.82e-72 232
Msa0555190 MtrunA17_Chr8g0368461 33.705 359 202 7 40 363 171 528 5.10e-70 228
Msa0555190 MtrunA17_Chr4g0005491 32.768 354 209 8 41 365 56 409 7.35e-68 219
Msa0555190 MtrunA17_Chr7g0259711 35.465 344 193 9 47 363 91 432 8.66e-68 220
Msa0555190 MtrunA17_Chr3g0126021 37.318 343 190 8 41 363 122 459 8.92e-68 220
Msa0555190 MtrunA17_Chr1g0209921 47.598 229 113 6 44 268 41 266 2.79e-67 213
Msa0555190 MtrunA17_Chr7g0243301 31.443 388 233 10 6 363 25 409 3.73e-67 217
Msa0555190 MtrunA17_Chr2g0287901 34.402 343 199 7 44 361 94 435 5.34e-67 218
Msa0555190 MtrunA17_Chr7g0242701 34.699 366 212 8 23 363 64 427 3.06e-66 215
Msa0555190 MtrunA17_Chr4g0005481 34.795 342 197 8 46 363 107 446 3.26e-66 216
Msa0555190 MtrunA17_Chr8g0384151 32.047 337 199 9 47 363 90 416 5.18e-57 191
Msa0555190 MtrunA17_Chr1g0178081 30.027 373 174 12 16 363 31 341 1.22e-45 159
Msa0555190 MtrunA17_Chr4g0049421 29.395 347 205 13 47 359 48 388 1.94e-38 141
Msa0555190 MtrunA17_Chr6g0455901 29.730 407 235 13 5 364 15 417 6.57e-38 140
Msa0555190 MtrunA17_Chr6g0476041 27.869 366 209 11 41 363 161 514 1.20e-36 139
Msa0555190 MtrunA17_Chr8g0384421 29.839 372 222 16 23 363 109 472 3.21e-35 134
Msa0555190 MtrunA17_Chr1g0188191 29.296 355 198 14 47 359 234 577 1.39e-34 134
Msa0555190 MtrunA17_Chr5g0414051 30.899 356 197 16 47 363 75 420 7.93e-34 129
Msa0555190 MtrunA17_Chr6g0456691 27.431 401 242 13 1 363 30 419 3.66e-32 125
Msa0555190 MtrunA17_Chr5g0414091 29.143 350 214 12 46 363 84 431 6.84e-32 124
Msa0555190 MtrunA17_Chr5g0414061 29.143 350 210 13 47 363 94 438 1.31e-31 124
Msa0555190 MtrunA17_Chr6g0456681 26.781 351 217 10 47 363 64 408 1.33e-30 120
Msa0555190 MtrunA17_Chr7g0226991 27.793 367 226 12 31 363 41 402 1.74e-30 120
Msa0555190 MtrunA17_Chr8g0391481 27.920 351 218 10 47 365 27 374 3.95e-30 119
Msa0555190 MtrunA17_Chr2g0283851 27.635 351 222 9 40 359 47 396 1.01e-29 118
Msa0555190 MtrunA17_Chr5g0414041 28.329 353 213 11 46 363 86 433 2.01e-29 117
Msa0555190 MtrunA17_Chr4g0070341 26.648 364 224 12 30 363 121 471 2.17e-29 118
Msa0555190 MtrunA17_Chr8g0347321 26.972 393 220 16 19 363 66 439 1.24e-28 115
Msa0555190 MtrunA17_Chr3g0140371 28.814 354 204 15 47 363 18 360 1.19e-26 108
Msa0555190 MtrunA17_Chr3g0085101 42.982 114 64 1 231 343 1 114 1.37e-26 102
Msa0555190 MtrunA17_Chr6g0451321 27.066 351 215 10 46 363 115 457 5.98e-26 108
Msa0555190 MtrunA17_Chr8g0387921 24.438 356 218 9 44 359 71 415 4.62e-24 102
Msa0555190 MtrunA17_Chr7g0221291 34.247 146 82 2 4 135 22 167 7.68e-20 85.9
Msa0555190 MtrunA17_Chr7g0221271 32.857 140 94 0 34 173 66 205 2.14e-19 85.5
Msa0555190 MtrunA17_Chr1g0209931 44.944 89 40 3 279 363 9 92 1.23e-16 74.7
Msa0555190 MtrunA17_Chr5g0429211 48.684 76 39 0 101 176 194 269 3.74e-16 77.8
Msa0555190 MtrunA17_Chr2g0287911 45.763 59 25 1 44 102 58 109 2.06e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0555190 AT2G42570.1 62.865 342 125 2 24 363 23 364 5.93e-166 468
Msa0555190 AT2G31110.2 62.733 322 119 1 44 364 42 363 1.08e-162 460
Msa0555190 AT1G29050.1 61.180 322 124 1 44 364 58 379 1.31e-154 440
Msa0555190 AT2G34070.1 60.938 320 123 2 47 364 65 384 6.82e-149 426
Msa0555190 AT3G14850.2 56.698 321 135 3 44 360 31 351 4.90e-133 384
Msa0555190 AT1G78710.1 50.147 339 162 5 29 363 21 356 5.89e-123 359
Msa0555190 AT2G30900.1 51.077 325 153 4 47 365 43 367 8.71e-121 353
Msa0555190 AT2G34070.2 60.800 250 96 2 117 364 1 250 6.70e-113 329
Msa0555190 AT5G58600.1 48.512 336 155 5 46 363 65 400 2.13e-110 328
Msa0555190 AT2G31110.3 62.385 218 82 0 44 261 42 259 6.37e-106 312
Msa0555190 AT2G30010.1 45.322 342 163 5 46 363 55 396 6.73e-104 311
Msa0555190 AT2G30010.2 45.322 342 163 5 46 363 98 439 1.41e-103 312
Msa0555190 AT2G31110.1 63.462 208 75 1 158 364 8 215 3.60e-102 300
Msa0555190 AT3G14850.1 55.645 248 106 3 117 360 1 248 7.67e-96 286
Msa0555190 AT1G78710.2 42.319 345 139 6 23 363 8 296 5.95e-91 275
Msa0555190 AT5G06700.1 41.935 341 173 6 47 363 255 594 2.84e-89 281
Msa0555190 AT3G54260.1 37.500 376 202 7 12 363 8 374 1.63e-85 264
Msa0555190 AT3G12060.1 39.181 342 183 5 46 363 195 535 6.04e-85 268
Msa0555190 AT2G30900.2 50.847 236 108 3 47 280 43 272 2.76e-84 257
Msa0555190 AT3G62390.1 37.870 338 189 6 47 365 138 473 1.40e-80 254
Msa0555190 AT5G58600.2 51.111 225 108 2 46 268 65 289 1.83e-79 245
Msa0555190 AT5G49340.1 36.544 353 181 7 45 363 98 441 5.67e-79 249
Msa0555190 AT3G55990.1 35.519 366 207 9 25 363 120 483 4.87e-78 248
Msa0555190 AT5G20590.1 35.882 340 194 7 47 363 141 479 2.11e-77 246
Msa0555190 AT1G73140.1 35.580 371 202 11 19 363 46 405 4.86e-75 238
Msa0555190 AT2G40160.2 35.714 350 193 9 47 365 77 425 8.93e-75 238
Msa0555190 AT2G40160.1 35.756 344 189 9 47 359 77 419 3.00e-74 236
Msa0555190 AT1G60790.1 36.047 344 192 7 47 363 190 532 9.01e-74 238
Msa0555190 AT2G40150.1 34.571 350 196 8 47 363 71 420 3.12e-73 234
Msa0555190 AT3G11030.1 35.694 353 199 9 38 363 97 448 1.10e-71 231
Msa0555190 AT5G01620.2 34.571 350 202 8 39 363 102 449 2.97e-71 229
Msa0555190 AT5G01620.1 34.571 350 202 8 39 363 102 449 2.97e-71 229
Msa0555190 AT5G01360.2 33.421 380 223 9 10 363 3 378 3.03e-71 227
Msa0555190 AT5G01620.3 34.571 350 202 8 39 363 110 457 4.91e-71 229
Msa0555190 AT5G01360.1 33.696 368 214 9 22 363 71 434 1.25e-70 227
Msa0555190 AT2G40320.1 35.097 359 208 8 30 363 64 422 1.60e-70 227
Msa0555190 AT5G19160.1 34.127 378 204 9 25 361 69 442 2.48e-68 222
Msa0555190 AT2G38320.1 32.368 380 226 9 13 363 27 404 1.31e-67 219
Msa0555190 AT3G06080.2 35.088 342 194 8 47 361 103 443 2.21e-67 220
Msa0555190 AT1G48880.1 35.475 358 208 8 18 359 85 435 7.08e-66 215
Msa0555190 AT5G06230.2 36.000 350 193 10 43 363 17 364 3.50e-65 211
Msa0555190 AT5G06230.1 36.000 350 193 10 43 363 58 405 6.19e-65 212
Msa0555190 AT3G11570.1 35.913 323 184 6 63 363 98 419 1.09e-63 209
Msa0555190 AT2G38320.2 31.761 318 189 7 74 363 4 321 1.22e-55 185
Msa0555190 AT3G62390.2 36.287 237 139 3 47 271 138 374 2.71e-54 184
Msa0555190 AT2G40160.3 37.179 234 135 5 47 268 77 310 1.15e-51 174
Msa0555190 AT5G20590.2 35.294 238 140 5 47 270 141 378 7.38e-51 174
Msa0555190 AT5G19160.2 33.955 268 155 4 25 270 69 336 6.47e-48 166
Msa0555190 AT3G06080.1 35.294 238 140 4 47 270 103 340 6.27e-46 160
Msa0555190 AT5G06230.3 35.081 248 141 5 43 270 58 305 7.37e-44 154
Msa0555190 AT2G14530.1 29.700 367 216 10 32 363 47 406 2.22e-41 150
Msa0555190 AT5G64470.3 29.799 349 212 12 40 359 46 390 3.93e-40 146
Msa0555190 AT1G70230.1 29.204 339 212 9 47 363 79 411 2.94e-38 142
Msa0555190 AT5G64470.2 29.775 356 209 14 40 359 46 396 3.59e-38 141
Msa0555190 AT5G51640.1 27.249 389 227 12 20 363 111 488 6.43e-36 137
Msa0555190 AT4G25360.1 27.548 363 212 12 39 359 167 520 5.73e-35 134
Msa0555190 AT4G25360.2 27.548 363 212 12 39 359 167 520 5.73e-35 134
Msa0555190 AT5G64020.1 29.722 360 204 15 46 363 56 408 2.31e-34 131
Msa0555190 AT5G15900.1 26.410 390 240 13 9 363 32 409 2.17e-32 126
Msa0555190 AT5G15900.2 26.410 390 240 13 9 363 51 428 3.01e-32 126
Msa0555190 AT2G37720.1 29.086 361 193 15 46 363 142 482 3.30e-32 126
Msa0555190 AT3G28150.1 28.133 391 240 14 6 365 32 412 3.95e-31 122
Msa0555190 AT5G20680.6 27.298 359 200 14 47 363 118 457 1.39e-29 119
Msa0555190 AT1G01430.1 25.266 376 237 11 26 363 78 447 1.41e-29 119
Msa0555190 AT5G20680.4 26.997 363 196 14 47 363 212 551 2.13e-29 119
Msa0555190 AT5G20680.1 26.997 363 196 14 47 363 212 551 2.13e-29 119
Msa0555190 AT5G20680.3 26.997 363 196 14 47 363 212 551 2.13e-29 119
Msa0555190 AT5G20680.5 26.997 363 196 14 47 363 212 551 2.13e-29 119
Msa0555190 AT5G20680.2 27.019 359 201 13 47 363 194 533 2.49e-29 119
Msa0555190 AT3G02440.1 25.141 354 216 11 47 363 127 468 2.30e-28 115
Msa0555190 AT3G02440.2 25.141 354 216 11 47 363 135 476 2.41e-28 115
Msa0555190 AT5G15890.1 26.724 348 204 12 47 359 187 518 5.06e-27 112
Msa0555190 AT5G64470.4 29.213 267 164 10 40 285 46 308 2.10e-24 102
Msa0555190 AT5G64470.1 29.213 267 164 10 40 285 46 308 3.30e-24 101
Msa0555190 AT4G11090.1 24.397 373 226 11 34 363 66 425 1.63e-23 101
Msa0555190 AT4G01080.1 24.857 350 218 12 44 359 88 426 2.62e-23 100
Msa0555190 AT4G23790.1 24.716 352 227 9 47 363 79 427 2.47e-21 95.1

Find 100 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCAAATTGAAAACATATT+TGG 0.172908 4_1:+53002683 None:intergenic
AACATATTTGGTACAATTAA+AGG 0.190331 4_1:+53002695 None:intergenic
CTGAATGTGCTTCTAGAATT+TGG 0.210759 4_1:+53007496 None:intergenic
TGAAACCATTTCTTGGGTTT+TGG 0.225487 4_1:+53008010 None:intergenic
CAAACCAAAGTCTTCTTCTT+AGG 0.227258 4_1:-53003336 Msa0555190:CDS
GACAACTTAATTTGTTTATA+AGG 0.239061 4_1:-53002861 Msa0555190:three_prime_UTR
ATGGCATCCACCTATATTTC+TGG 0.239401 4_1:+53007736 None:intergenic
GTAACTTGTTCCGTGGTAAA+TGG 0.242938 4_1:-53007857 Msa0555190:CDS
GATGTTTCGGTTCTTGTAAT+TGG 0.248803 4_1:-53002782 Msa0555190:three_prime_UTR
TGTAGCCACTGGTGTCTTCC+TGG 0.277598 4_1:-53002961 Msa0555190:CDS
AGTGAGAAAGTGCCATATTT+TGG 0.279871 4_1:-53003141 Msa0555190:CDS
TTCTTGTAATTGGGCAATAA+AGG 0.288308 4_1:-53002772 Msa0555190:three_prime_UTR
CTTGGCATGTTACAAGAAAA+TGG 0.318130 4_1:+53007717 None:intergenic
AGAAGCTGATTCCAAGTATC+AGG 0.322948 4_1:+53002934 None:intergenic
GGGTATTTCAAACCAAAATA+TGG 0.332479 4_1:+53003129 None:intergenic
CTTAAACCAGTTCAATTCAT+TGG 0.334124 4_1:-53007542 Msa0555190:CDS
GATGCACTGAAACCATTTCT+TGG 0.342816 4_1:+53008003 None:intergenic
ATGTTTCGGTTCTTGTAATT+GGG 0.353987 4_1:-53002781 Msa0555190:three_prime_UTR
ATTGTAAATGTTCATTGTTT+AGG 0.354264 4_1:-53002728 Msa0555190:three_prime_UTR
AATTGTATCTTGGAAGGATT+TGG 0.364872 4_1:-53002663 Msa0555190:three_prime_UTR
TGACAGATGGGATTATATTC+AGG 0.367092 4_1:-53003457 Msa0555190:intron
TTCCTGGACTTCCTGATACT+TGG 0.369841 4_1:-53002945 Msa0555190:CDS
TCACTCATGCATGACTTTGT+TGG 0.371357 4_1:+53003159 None:intergenic
ATAAGCTTTACCAGAAATAT+AGG 0.384304 4_1:-53007746 Msa0555190:CDS
TTTCAATTTGAATTGTATCT+TGG 0.399512 4_1:-53002673 Msa0555190:three_prime_UTR
GTCACATCTAAGAAATAAAC+TGG 0.411760 4_1:+53003048 None:intergenic
AAGAAGACTTTGGTTTGTGC+TGG 0.422122 4_1:+53003342 None:intergenic
ATGCACTGAAACCATTTCTT+GGG 0.425708 4_1:+53008004 None:intergenic
CAAGCCATTGGTGTCCCTCC+AGG 0.427641 4_1:+53003108 None:intergenic
TTTGAAGTCAGTAACATTGC+AGG 0.428295 4_1:-53007885 Msa0555190:CDS
AACTTTCTGAAGGGTAATAG+AGG 0.429506 4_1:-53007598 Msa0555190:CDS
TCTATACCGCACAGCATACT+TGG 0.433438 4_1:-53003699 Msa0555190:CDS
TGAAGGTTATAGTGGTGTTA+TGG 0.434673 4_1:-53002992 Msa0555190:CDS
TACAAGCCAATGAATTGAAC+TGG 0.435027 4_1:+53007536 None:intergenic
TATTAATAACTTACTGGTAA+TGG 0.435286 4_1:+53003301 None:intergenic
TATCTCTTCAGTCACATTTG+AGG 0.440220 4_1:-53007461 Msa0555190:intron
GTCCTTCTTTATCATGATCA+AGG 0.442671 4_1:+53003672 None:intergenic
TAACTTGTTCCGTGGTAAAT+GGG 0.444025 4_1:-53007856 Msa0555190:CDS
TCTACAAAGGACTACAAACT+TGG 0.453097 4_1:-53003392 Msa0555190:CDS
TGGGACCAAAACCCAAGAAA+TGG 0.456027 4_1:-53008015 Msa0555190:exon
TGTAATTGGGCAATAAAGGT+TGG 0.457607 4_1:-53002768 Msa0555190:three_prime_UTR
AATTCCTAAGAAGAAGACTT+TGG 0.470232 4_1:+53003332 None:intergenic
TATTATATAAGAACATGATT+AGG 0.472698 4_1:-53008103 Msa0555190:five_prime_UTR
AAAGATGTGGAGAGAGAAAG+AGG 0.484635 4_1:+53008136 None:intergenic
AATGTTACTGACTTCAAAGT+TGG 0.485805 4_1:+53007890 None:intergenic
AATTTGAATTGTATCTTGGA+AGG 0.492432 4_1:-53002669 Msa0555190:three_prime_UTR
CAATCAAGAGTGGTGAAGCT+TGG 0.495413 4_1:-53003631 Msa0555190:CDS
AGGGACACCAATGGCTTGGA+TGG 0.502776 4_1:-53003103 Msa0555190:CDS
TCTTCAACACGTGGCATTGG+TGG 0.505890 4_1:-53003589 Msa0555190:CDS
GCACATCCTGAAGGTTATAG+TGG 0.507023 4_1:-53003000 Msa0555190:CDS
CAATGGTTTGAACTTTCTGA+AGG 0.510925 4_1:-53007608 Msa0555190:CDS
ATAACACCACTATAACCTTC+AGG 0.516042 4_1:+53002994 None:intergenic
TGCAGCACTTTCTCATTGAA+AGG 0.516119 4_1:-53002908 Msa0555190:exon
AACAGAGTTAGAAACAGAGT+TGG 0.520909 4_1:+53007966 None:intergenic
ATGTGGAGAGAGAAAGAGGA+GGG 0.522163 4_1:+53008140 None:intergenic
TTTCCTAAAGTTGAAAACAA+TGG 0.522264 4_1:+53002815 None:intergenic
CGGTTGTGAGCTTCCAGTGT+GGG 0.524560 4_1:+53003565 None:intergenic
TTGGTTTGAAATACCCTGGA+GGG 0.527368 4_1:-53003122 Msa0555190:CDS
TGGTGAAGCTTGGAGAGGAA+TGG 0.527447 4_1:-53003621 Msa0555190:CDS
CTGGAGGGACACCAATGGCT+TGG 0.529625 4_1:-53003107 Msa0555190:CDS
TTCACCACCATCCAAGCCAT+TGG 0.532920 4_1:+53003096 None:intergenic
TCTATGAAAGGACAAGTTGA+AGG 0.533615 4_1:+53007804 None:intergenic
TGATCTTCAACACGTGGCAT+TGG 0.541024 4_1:-53003592 Msa0555190:CDS
TCATGCATGACTTTGTTGGT+TGG 0.542003 4_1:+53003163 None:intergenic
CAAGTTGAAGGGTTATAGAG+AGG 0.546976 4_1:+53007816 None:intergenic
TTCCAAGTATCAGGAAGTCC+AGG 0.548161 4_1:+53002943 None:intergenic
TTCCCACAAAACAAAATCAG+AGG 0.564876 4_1:-53007937 Msa0555190:CDS
ATAACTTACTGGTAATGGAC+AGG 0.565637 4_1:+53003306 None:intergenic
GACCTTGATCATGATAAAGA+AGG 0.566545 4_1:-53003674 Msa0555190:CDS
GACTACAAACTTGGGCTAGG+TGG 0.570817 4_1:-53003383 Msa0555190:CDS
ACTACAAACTTGGGCTAGGT+GGG 0.578379 4_1:-53003382 Msa0555190:CDS
AAGCCATTGGTGTCCCTCCA+GGG 0.581911 4_1:+53003109 None:intergenic
CTACAAAGGACTACAAACTT+GGG 0.582833 4_1:-53003391 Msa0555190:CDS
TGGCATTGGTGGACCCACAC+TGG 0.584418 4_1:-53003578 Msa0555190:CDS
ATACCGCACAGCATACTTGG+TGG 0.586879 4_1:-53003696 Msa0555190:CDS
TTGAACTGTGGATCTATGAA+AGG 0.589879 4_1:+53007792 None:intergenic
GGCTTGGATGGTGGTGAACA+AGG 0.591402 4_1:-53003091 Msa0555190:CDS
AATGGTTTGAACTTTCTGAA+GGG 0.597673 4_1:-53007607 Msa0555190:CDS
AGAAAAGATGCACATCCTGA+AGG 0.597997 4_1:-53003009 Msa0555190:CDS
AAGGACTACAAACTTGGGCT+AGG 0.603384 4_1:-53003386 Msa0555190:CDS
GACACCAATGGCTTGGATGG+TGG 0.610440 4_1:-53003100 Msa0555190:CDS
ACTTTCTGAAGGGTAATAGA+GGG 0.610568 4_1:-53007597 Msa0555190:CDS
CAGTTCAATTGTCAGAAACA+TGG 0.617132 4_1:-53007777 Msa0555190:CDS
TGGCAACTGATTGTAGCCAC+TGG 0.618075 4_1:-53002972 Msa0555190:CDS
CTATGAAAGGACAAGTTGAA+GGG 0.623253 4_1:+53007805 None:intergenic
TGGTGAACAAGGTGTTGAGA+AGG 0.632793 4_1:-53003080 Msa0555190:CDS
ATTGGGCAATAAAGGTTGGA+CGG 0.639154 4_1:-53002764 Msa0555190:three_prime_UTR
ATACCCTGGAGGGACACCAA+TGG 0.646199 4_1:-53003112 Msa0555190:CDS
AGCTTTACCAGAAATATAGG+TGG 0.648575 4_1:-53007743 Msa0555190:CDS
GATGTGGAGAGAGAAAGAGG+AGG 0.650653 4_1:+53008139 None:intergenic
ACGGTTGTGAGCTTCCAGTG+TGG 0.657143 4_1:+53003564 None:intergenic
AAGCTTGACTCAATCAAGAG+TGG 0.662012 4_1:-53003641 Msa0555190:CDS
AAGAGTGGTGAAGCTTGGAG+AGG 0.679537 4_1:-53003626 Msa0555190:CDS
GGAACATGTAACTTGTTCCG+TGG 0.686906 4_1:-53007864 Msa0555190:CDS
TGTTTCTGACAATTGAACTG+TGG 0.711026 4_1:+53007780 None:intergenic
TTTGGTTTGAAATACCCTGG+AGG 0.715369 4_1:-53003123 Msa0555190:CDS
GAAGTCCAGGAAGACACCAG+TGG 0.726350 4_1:+53002956 None:intergenic
CGTCGTAGACCCATTTACCA+CGG 0.729436 4_1:+53007847 None:intergenic
ATGTGTTGATCTTCAACACG+TGG 0.756788 4_1:-53003598 Msa0555190:CDS
GGTCCACCAAGTATGCTGTG+CGG 0.774384 4_1:+53003693 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTGAATGAAAAA+AGG + chr4_1:53002675-53002694 None:intergenic 10.0%
!! AAAAAAAAAAAAAAAAATCG+TGG - chr4_1:53002686-53002705 Msa0555190:three_prime_UTR 10.0%
!! AAAAAAAAAAAAAAAATCGT+GGG - chr4_1:53002687-53002706 Msa0555190:three_prime_UTR 10.0%
!!! TTTATTTTTTTATTTTGAGA+GGG + chr4_1:53004201-53004220 None:intergenic 10.0%
!!! TTTTATTTTTTTATTTTGAG+AGG + chr4_1:53004202-53004221 None:intergenic 10.0%
!!! GGTTTTTTTTTTTTTTTTTT+AGG - chr4_1:53004372-53004391 Msa0555190:intron 10.0%
!! TAATAATTTAATGAGTAAAT+AGG - chr4_1:53004420-53004439 Msa0555190:intron 10.0%
!! AAAAAAAATTGAAAAAATTC+TGG - chr4_1:53004663-53004682 Msa0555190:intron 10.0%
!! TAATAAAAATGAAAAAAATC+TGG - chr4_1:53004740-53004759 Msa0555190:intron 10.0%
!! TAAAAAAGATTAAAAAATTC+TGG - chr4_1:53004860-53004879 Msa0555190:intron 10.0%
!!! TTCTAAAAAAATTAAAATTC+TGG - chr4_1:53004904-53004923 Msa0555190:intron 10.0%
!!! TTTAAATTTTAATGAAATTC+TGG - chr4_1:53004947-53004966 Msa0555190:intron 10.0%
!! ATATATACTAATCAAAATTT+CGG - chr4_1:53005304-53005323 Msa0555190:intron 10.0%
!! AAAAAGATATTAAAAAATTC+TGG + chr4_1:53005619-53005638 None:intergenic 10.0%
!! AATGAAAATATAAAAAAACA+GGG + chr4_1:53006156-53006175 None:intergenic 10.0%
!! AAATGAAAATATAAAAAAAC+AGG + chr4_1:53006157-53006176 None:intergenic 10.0%
!! ATATATATTCTATCAATATT+TGG - chr4_1:53006282-53006301 Msa0555190:intron 10.0%
!!! CTTTTTTAATTTTTTTTTTG+TGG - chr4_1:53006563-53006582 Msa0555190:intron 10.0%
!!! TATAACTTATTGTTTTTTTT+AGG - chr4_1:53006985-53007004 Msa0555190:intron 10.0%
!!! AAATATTTTATTTGATGTTT+CGG - chr4_1:53007931-53007950 Msa0555190:CDS 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_1:53004448-53004467 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_1:53004448-53004467 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_1:53004448-53004467 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_1:53004448-53004467 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_1:53004448-53004467 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_1:53004448-53004467 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_1:53004448-53004467 None:intergenic 100.0%
! CGGGGGGGGGGGGGGGGGGG+GGG + chr4_1:53004458-53004477 None:intergenic 100.0%
!! TATTATATAAGAACATGATT+AGG - chr4_1:53002623-53002642 Msa0555190:three_prime_UTR 15.0%
!!! TTCATTACGTATTTTATTTA+TGG - chr4_1:53004023-53004042 Msa0555190:intron 15.0%
!!! TTTTGAATATAAAGTAAGAA+GGG + chr4_1:53004071-53004090 None:intergenic 15.0%
!!! TTTTTTTTTGATAAATGAGA+GGG + chr4_1:53004172-53004191 None:intergenic 15.0%
!! CATTTATCAAAAAAAAACTT+CGG - chr4_1:53004175-53004194 Msa0555190:intron 15.0%
!!! ATTTGACAATGTTTTATTAT+AGG + chr4_1:53004265-53004284 None:intergenic 15.0%
!!! TTATTTTATTGTTAAACATC+CGG - chr4_1:53004307-53004326 Msa0555190:intron 15.0%
!!! TTTTTAATTTTTCAAGTTCA+GGG + chr4_1:53004648-53004667 None:intergenic 15.0%
!!! TTTTTTAATTTTTCAAGTTC+AGG + chr4_1:53004649-53004668 None:intergenic 15.0%
!! ATCTGAAAATTTAAAAAATC+TGG - chr4_1:53004786-53004805 Msa0555190:intron 15.0%
!!! ATTTTCATTAGTATTTTTTC+CGG - chr4_1:53005190-53005209 Msa0555190:intron 15.0%
!!! ATTTTTGTGTATTTATAAAC+CGG - chr4_1:53005097-53005116 Msa0555190:intron 15.0%
!! GAAAAATAATGAAAAAATTC+TGG + chr4_1:53005404-53005423 None:intergenic 15.0%
!! CTGAAAAAATTTAAAAATTC+TGG + chr4_1:53005480-53005499 None:intergenic 15.0%
!! GAAAAAAATTGAAAAAATTC+TGG + chr4_1:53005703-53005722 None:intergenic 15.0%
!!! TAAAAAAGATTAGGATTTTT+TGG + chr4_1:53006551-53006570 None:intergenic 15.0%
!! ATTAGATATTAATAACTTAC+TGG + chr4_1:53007434-53007453 None:intergenic 15.0%
!!! TTAAGCTCTAAAAATATATA+TGG - chr4_1:53007512-53007531 Msa0555190:CDS 15.0%
!! ATTCAAATTGAAAACATATT+TGG + chr4_1:53008046-53008065 None:intergenic 15.0%
!!! TGTTCTTTTATTGGTTTTTA+TGG - chr4_1:53003055-53003074 Msa0555190:CDS 20.0%
!! TCAAAACAATAAAGAACAAA+AGG + chr4_1:53003492-53003511 None:intergenic 20.0%
!!! ACAATATTTTCTTACACTAT+TGG + chr4_1:53003523-53003542 None:intergenic 20.0%
!!! TTGTTTGTTTTAATGATGTT+AGG - chr4_1:53003546-53003565 Msa0555190:intron 20.0%
!! ATCAACAAAGAGAAAAAAAA+CGG - chr4_1:53003902-53003921 Msa0555190:intron 20.0%
!! TAAAATACGTAATGAATTTG+TGG + chr4_1:53004019-53004038 None:intergenic 20.0%
!!! ATTTTATTTATGGTGAAAAG+TGG - chr4_1:53004033-53004052 Msa0555190:intron 20.0%
!!! GTTTTGAATATAAAGTAAGA+AGG + chr4_1:53004072-53004091 None:intergenic 20.0%
!!! GTTTTTTTTTGATAAATGAG+AGG + chr4_1:53004173-53004192 None:intergenic 20.0%
!! TTATTATAGGATAAAGTTCA+AGG + chr4_1:53004252-53004271 None:intergenic 20.0%
!!! CAAAGTGTTAAAATAAAAAC+CGG + chr4_1:53004329-53004348 None:intergenic 20.0%
!!! TTTTTTTTTTTTAGGGATGT+TGG - chr4_1:53004380-53004399 Msa0555190:intron 20.0%
!!! TTTTTTTTTTTAGGGATGTT+GGG - chr4_1:53004381-53004400 Msa0555190:intron 20.0%
!!! ATTTTTCTGTTAACTGTTTA+CGG - chr4_1:53004574-53004593 Msa0555190:intron 20.0%
!!! TTTTAATTTTTCAAGTTCAG+GGG + chr4_1:53004647-53004666 None:intergenic 20.0%
!! CGAAAATAAAAATGAAATTC+TGG - chr4_1:53005000-53005019 Msa0555190:intron 20.0%
!!! AGTATTTCTCAAAAATTTTC+CGG - chr4_1:53005072-53005091 Msa0555190:intron 20.0%
!! TATAAATACACAAAAATTCC+CGG + chr4_1:53005094-53005113 None:intergenic 20.0%
!! TATTTATAAACCGAGAATAA+GGG - chr4_1:53005106-53005125 Msa0555190:intron 20.0%
!! ATATATAAAAAACCTAAGCT+CGG + chr4_1:53005154-53005173 None:intergenic 20.0%
!!! TTTTCATTAGTATTTTTTCC+GGG - chr4_1:53005191-53005210 Msa0555190:intron 20.0%
!! TATAAATACACAAAAATTCC+CGG + chr4_1:53005094-53005113 None:intergenic 20.0%
!!! TTTTTGTGTATTTATAAACC+GGG - chr4_1:53005098-53005117 Msa0555190:intron 20.0%
!! TATTTATAAACCGAGAATAA+GGG - chr4_1:53005106-53005125 Msa0555190:intron 20.0%
!! CGGAAAAAATTTAAAAAATC+TGG + chr4_1:53005564-53005583 None:intergenic 20.0%
!!! TTTCAATTTTTTTCAAGTTC+AGG - chr4_1:53005709-53005728 Msa0555190:intron 20.0%
!!! TTCAATTTTTTTCAAGTTCA+GGG - chr4_1:53005710-53005729 Msa0555190:intron 20.0%
!!! ATTTTTCTGTTAACTGTTTA+CGG + chr4_1:53004574-53004593 None:intergenic 20.0%
!! ATTGATGAAACTTACAATTT+CGG - chr4_1:53005880-53005899 Msa0555190:intron 20.0%
!! GAATTAAATTATGAGTGAAT+AGG + chr4_1:53005917-53005936 None:intergenic 20.0%
!! ATGATATTTATAGAGAAGTT+GGG + chr4_1:53006043-53006062 None:intergenic 20.0%
!! TATGATATTTATAGAGAAGT+TGG + chr4_1:53006044-53006063 None:intergenic 20.0%
!! TTATATTCAAAAAATAGTCC+TGG - chr4_1:53006191-53006210 Msa0555190:intron 20.0%
!! AAAAAACAAAAGAGAGAAAA+AGG + chr4_1:53006395-53006414 None:intergenic 20.0%
!! TGACATTATAACAACAATTT+CGG + chr4_1:53006460-53006479 None:intergenic 20.0%
!!! TTTTTTGGTATCCTAAAATT+TGG + chr4_1:53006536-53006555 None:intergenic 20.0%
!! ATTATCATTCATTACATTTG+CGG + chr4_1:53006702-53006721 None:intergenic 20.0%
!! AACATTGAACATTAAGATAA+CGG - chr4_1:53006888-53006907 Msa0555190:intron 20.0%
!!! TATTGTTTTTTTTAGGAGTA+TGG - chr4_1:53006992-53007011 Msa0555190:intron 20.0%
!!! ATTGTTTTTTTTAGGAGTAT+GGG - chr4_1:53006993-53007012 Msa0555190:intron 20.0%
!! TATTAATAACTTACTGGTAA+TGG + chr4_1:53007428-53007447 None:intergenic 20.0%
!! CTAAAAATATATATGGTGTA+TGG - chr4_1:53007519-53007538 Msa0555190:CDS 20.0%
!!! GACAACTTAATTTGTTTATA+AGG - chr4_1:53007865-53007884 Msa0555190:CDS 20.0%
!!! ACATTTACAATTTTAGACAT+TGG + chr4_1:53007989-53008008 None:intergenic 20.0%
!! ATTGTAAATGTTCATTGTTT+AGG - chr4_1:53007998-53008017 Msa0555190:CDS 20.0%
!! AACATATTTGGTACAATTAA+AGG + chr4_1:53008034-53008053 None:intergenic 20.0%
!! TTTCAATTTGAATTGTATCT+TGG - chr4_1:53008053-53008072 Msa0555190:five_prime_UTR 20.0%
!!! CAAATCAAAAGTTTTAGAAA+AGG + chr4_1:53008123-53008142 None:intergenic 20.0%
! AAAAAAAAAAAATCGTGGGT+TGG - chr4_1:53002691-53002710 Msa0555190:three_prime_UTR 25.0%
! AAAAAAAAAAATCGTGGGTT+GGG - chr4_1:53002692-53002711 Msa0555190:three_prime_UTR 25.0%
! ATAAGCTTTACCAGAAATAT+AGG - chr4_1:53002980-53002999 Msa0555190:CDS 25.0%
!! ACCATTTTGTGTTCTTTTAT+TGG - chr4_1:53003046-53003065 Msa0555190:CDS 25.0%
! ACCAATAAAAGAACACAAAA+TGG + chr4_1:53003050-53003069 None:intergenic 25.0%
! TTTCAAATTATTAGCAGTGT+CGG + chr4_1:53003373-53003392 None:intergenic 25.0%
! CAATAAAGAATTGATGTGAT+TGG - chr4_1:53003730-53003749 Msa0555190:intron 25.0%
!! TTTTATTATTAGAACAGACG+TGG - chr4_1:53003982-53004001 Msa0555190:intron 25.0%
! ATTAACGTTATGCAATTTCA+GGG + chr4_1:53005823-53005842 None:intergenic 25.0%
! ACAGTTAACAGAAAAATTGA+CGG + chr4_1:53005787-53005806 None:intergenic 25.0%
! ACATAAGTGTAAAATTTCAG+GGG + chr4_1:53004615-53004634 None:intergenic 25.0%
! CACATAAGTGTAAAATTTCA+GGG + chr4_1:53004616-53004635 None:intergenic 25.0%
!!! TTTAATTTTTCAAGTTCAGG+GGG + chr4_1:53004646-53004665 None:intergenic 25.0%
!! GTATTTCTCAAAAATTTTCC+GGG - chr4_1:53005073-53005092 Msa0555190:intron 25.0%
! GTATTTATAAACCGAGAATA+AGG - chr4_1:53005105-53005124 Msa0555190:intron 25.0%
!!! CATATTTTTTCCCTTATTCT+CGG + chr4_1:53005119-53005138 None:intergenic 25.0%
! ATAAATACACAAAAAGTTCC+CGG + chr4_1:53005237-53005256 None:intergenic 25.0%
! GTATTTATAAACCGAGAATA+AGG - chr4_1:53005105-53005124 Msa0555190:intron 25.0%
!!! TGTATTTTTTCCCTTATTCT+CGG + chr4_1:53005263-53005282 None:intergenic 25.0%
!!! ATGTCGAAATTTTGAAATTC+TGG + chr4_1:53005353-53005372 None:intergenic 25.0%
!!! TCAATTTTTTTCAAGTTCAG+GGG - chr4_1:53005711-53005730 Msa0555190:intron 25.0%
! ACAGTTAACAGAAAAATTGA+CGG - chr4_1:53005787-53005806 Msa0555190:intron 25.0%
! ATTAACGTTATGCAATTTCA+GGG - chr4_1:53005823-53005842 Msa0555190:intron 25.0%
! TTGATGAAACTTACAATTTC+GGG - chr4_1:53005881-53005900 Msa0555190:intron 25.0%
!! TTGTACAACTACTAGTATTT+TGG - chr4_1:53005974-53005993 Msa0555190:intron 25.0%
! TGATATTTATAGAGAAGTTG+GGG + chr4_1:53006042-53006061 None:intergenic 25.0%
! TATTAAAGAGTGAATTGTTG+TGG + chr4_1:53006265-53006284 None:intergenic 25.0%
!! TGAGTAATCAACCAAATTTT+AGG - chr4_1:53006522-53006541 Msa0555190:intron 25.0%
!!! AATTAATCAGATTTTCTGGT+AGG + chr4_1:53006756-53006775 None:intergenic 25.0%
!! AAGCAATTAATCAGATTTTC+TGG + chr4_1:53006760-53006779 None:intergenic 25.0%
!! TGCTATTTATATAATGTGAC+TGG - chr4_1:53006813-53006832 Msa0555190:intron 25.0%
! TATATATGGTGTATGGTATT+AGG - chr4_1:53007526-53007545 Msa0555190:CDS 25.0%
! ATATATGGTGTATGGTATTA+GGG - chr4_1:53007527-53007546 Msa0555190:CDS 25.0%
!!! TAAGGTTCTACTTATTTTAG+AGG - chr4_1:53007883-53007902 Msa0555190:CDS 25.0%
!! AATCCATTGTTTTCAACTTT+AGG - chr4_1:53007908-53007927 Msa0555190:CDS 25.0%
! TTTCCTAAAGTTGAAAACAA+TGG + chr4_1:53007914-53007933 None:intergenic 25.0%
! AATTTGAATTGTATCTTGGA+AGG - chr4_1:53008057-53008076 Msa0555190:five_prime_UTR 25.0%
!!! AACCTCTGATTTTGTTTTGT+GGG + chr4_1:53002794-53002813 None:intergenic 30.0%
!!! AAACCTCTGATTTTGTTTTG+TGG + chr4_1:53002795-53002814 None:intergenic 30.0%
!! AATGTTACTGACTTCAAAGT+TGG + chr4_1:53002839-53002858 None:intergenic 30.0%
TGGTAACAAAAATTGTACCT+TGG + chr4_1:53003030-53003049 None:intergenic 30.0%
TTTATGGTTGTAGCTAAATG+TGG - chr4_1:53003071-53003090 Msa0555190:CDS 30.0%
!! GTTGTGATAAATTGTTTTGC+AGG - chr4_1:53003093-53003112 Msa0555190:CDS 30.0%
!! AAATTGTTTTGCAGGTTCAA+TGG - chr4_1:53003101-53003120 Msa0555190:CDS 30.0%
AATGGTTTGAACTTTCTGAA+GGG - chr4_1:53003119-53003138 Msa0555190:CDS 30.0%
GGGAAAAAGATTATGTTTGT+TGG - chr4_1:53003149-53003168 Msa0555190:CDS 30.0%
CTTAAACCAGTTCAATTCAT+TGG - chr4_1:53003184-53003203 Msa0555190:intron 30.0%
AAAGAATTGATGTGATTGGT+TGG - chr4_1:53003734-53003753 Msa0555190:intron 30.0%
!! ATATACTCAAACCACTTTTG+TGG - chr4_1:53003824-53003843 Msa0555190:intron 30.0%
CATTATGTGCATGTTTGAAT+TGG + chr4_1:53003860-53003879 None:intergenic 30.0%
!!! ACCACTCTTTATTTTTTGAG+AGG - chr4_1:53003929-53003948 Msa0555190:intron 30.0%
!!! CCACTCTTTATTTTTTGAGA+GGG - chr4_1:53003930-53003949 Msa0555190:intron 30.0%
GTTTGAGAAACAATAAAGAG+CGG + chr4_1:53003962-53003981 None:intergenic 30.0%
!! CTAGTTCTTTTCTTTTGCAT+AGG + chr4_1:53004130-53004149 None:intergenic 30.0%
CTAGACAAGAAAATGAACTT+TGG - chr4_1:53004146-53004165 Msa0555190:intron 30.0%
!!! TTGACACCTAAAGTTTTGTT+AGG - chr4_1:53004346-53004365 Msa0555190:intron 30.0%
!!! ACCTAAAGTTTTGTTAGGTA+TGG - chr4_1:53004351-53004370 Msa0555190:intron 30.0%
ACCATACCTAACAAAACTTT+AGG + chr4_1:53004355-53004374 None:intergenic 30.0%
TTTGACAAACCTTGCAATTT+CGG + chr4_1:53004478-53004497 None:intergenic 30.0%
TTGATGTTTCGTTAACTACA+GGG + chr4_1:53005852-53005871 None:intergenic 30.0%
ATTGATGTTTCGTTAACTAC+AGG + chr4_1:53005851-53005870 None:intergenic 30.0%
TTAACGTTATGCAATTTCAG+GGG + chr4_1:53005824-53005843 None:intergenic 30.0%
GATTAACGTTATGCAATTTC+AGG + chr4_1:53005822-53005841 None:intergenic 30.0%
TTAACAGAAAAATTGACGGA+GGG + chr4_1:53005791-53005810 None:intergenic 30.0%
ATAAGTGTAAAATTTCAGGG+GGG + chr4_1:53004613-53004632 None:intergenic 30.0%
CATAAGTGTAAAATTTCAGG+GGG + chr4_1:53004614-53004633 None:intergenic 30.0%
GCACATAAGTGTAAAATTTC+AGG + chr4_1:53004617-53004636 None:intergenic 30.0%
TGTATTTATAAACCGAGCTT+AGG - chr4_1:53005139-53005158 Msa0555190:intron 30.0%
TTAGTATATATGTCGAGCTT+AGG + chr4_1:53005295-53005314 None:intergenic 30.0%
!!! CAATTTTTTTCAAGTTCAGG+GGG - chr4_1:53005712-53005731 Msa0555190:intron 30.0%
CACATAAGTGTACAATTTCA+GGG - chr4_1:53005742-53005761 Msa0555190:intron 30.0%
ACATAAGTGTACAATTTCAG+GGG - chr4_1:53005743-53005762 Msa0555190:intron 30.0%
TTAACAGAAAAATTGACGGA+GGG - chr4_1:53005791-53005810 Msa0555190:intron 30.0%
GATTAACGTTATGCAATTTC+AGG - chr4_1:53005822-53005841 Msa0555190:intron 30.0%
TTAACGTTATGCAATTTCAG+GGG - chr4_1:53005824-53005843 Msa0555190:intron 30.0%
ATTGATGTTTCGTTAACTAC+AGG - chr4_1:53005851-53005870 Msa0555190:intron 30.0%
TTGATGTTTCGTTAACTACA+GGG - chr4_1:53005852-53005871 Msa0555190:intron 30.0%
TGATGAAACTTACAATTTCG+GGG - chr4_1:53005882-53005901 Msa0555190:intron 30.0%
ATATTTATAGAGAAGTTGGG+GGG + chr4_1:53006040-53006059 None:intergenic 30.0%
GATATTTATAGAGAAGTTGG+GGG + chr4_1:53006041-53006060 None:intergenic 30.0%
TATTCAAAAAATAGTCCTGG+TGG - chr4_1:53006194-53006213 Msa0555190:intron 30.0%
ATTCAAAAAATAGTCCTGGT+GGG - chr4_1:53006195-53006214 Msa0555190:intron 30.0%
! ATCTTGAGATATTTTGTTGG+GGG + chr4_1:53006310-53006329 None:intergenic 30.0%
! GATCTTGAGATATTTTGTTG+GGG + chr4_1:53006311-53006330 None:intergenic 30.0%
! GGATCTTGAGATATTTTGTT+GGG + chr4_1:53006312-53006331 None:intergenic 30.0%
AGAAAGTTGTACCAAAATAC+CGG + chr4_1:53006336-53006355 None:intergenic 30.0%
!! TTTGTTTTCTCTCTTCTCAT+TGG + chr4_1:53006419-53006438 None:intergenic 30.0%
!!! ACGAAACCCTTTTTTTTTCA+TGG - chr4_1:53006660-53006679 Msa0555190:intron 30.0%
ATGGGACCATGAAAAAAAAA+GGG + chr4_1:53006669-53006688 None:intergenic 30.0%
TGTTCATAAGTGTATCAAAC+TGG - chr4_1:53006845-53006864 Msa0555190:intron 30.0%
AATGTGACAAAATGATCCTA+CGG + chr4_1:53007184-53007203 None:intergenic 30.0%
ACTTGAAATTCATGACAGAT+GGG - chr4_1:53007257-53007276 Msa0555190:intron 30.0%
AATTCCTAAGAAGAAGACTT+TGG + chr4_1:53007397-53007416 None:intergenic 30.0%
TATATGGTGTATGGTATTAG+GGG - chr4_1:53007528-53007547 Msa0555190:CDS 30.0%
GGGTATTTCAAACCAAAATA+TGG + chr4_1:53007600-53007619 None:intergenic 30.0%
!!! TATTTTGGTTTGAAATACCC+TGG - chr4_1:53007600-53007619 Msa0555190:CDS 30.0%
GTCACATCTAAGAAATAAAC+TGG + chr4_1:53007681-53007700 None:intergenic 30.0%
ATGTTTCGGTTCTTGTAATT+GGG - chr4_1:53007945-53007964 Msa0555190:CDS 30.0%
TTCTTGTAATTGGGCAATAA+AGG - chr4_1:53007954-53007973 Msa0555190:CDS 30.0%
AATTGTATCTTGGAAGGATT+TGG - chr4_1:53008063-53008082 Msa0555190:five_prime_UTR 30.0%
ATAGTGTCTGCAAAAAGATG+TGG + chr4_1:53002606-53002625 None:intergenic 35.0%
! TGAAACCATTTCTTGGGTTT+TGG + chr4_1:53002719-53002738 None:intergenic 35.0%
ATGCACTGAAACCATTTCTT+GGG + chr4_1:53002725-53002744 None:intergenic 35.0%
AACAGAGTTAGAAACAGAGT+TGG + chr4_1:53002763-53002782 None:intergenic 35.0%
TTCCCACAAAACAAAATCAG+AGG - chr4_1:53002789-53002808 Msa0555190:three_prime_UTR 35.0%
! TTTGAAGTCAGTAACATTGC+AGG - chr4_1:53002841-53002860 Msa0555190:three_prime_UTR 35.0%
!! TAACTTGTTCCGTGGTAAAT+GGG - chr4_1:53002870-53002889 Msa0555190:three_prime_UTR 35.0%
! CTATGAAAGGACAAGTTGAA+GGG + chr4_1:53002924-53002943 None:intergenic 35.0%
! TCTATGAAAGGACAAGTTGA+AGG + chr4_1:53002925-53002944 None:intergenic 35.0%
TTGAACTGTGGATCTATGAA+AGG + chr4_1:53002937-53002956 None:intergenic 35.0%
! TGTTTCTGACAATTGAACTG+TGG + chr4_1:53002949-53002968 None:intergenic 35.0%
CAGTTCAATTGTCAGAAACA+TGG - chr4_1:53002949-53002968 Msa0555190:CDS 35.0%
AGCTTTACCAGAAATATAGG+TGG - chr4_1:53002983-53003002 Msa0555190:CDS 35.0%
CTTGGCATGTTACAAGAAAA+TGG + chr4_1:53003012-53003031 None:intergenic 35.0%
! CATTTTCTTGTAACATGCCA+AGG - chr4_1:53003010-53003029 Msa0555190:CDS 35.0%
CAATGGTTTGAACTTTCTGA+AGG - chr4_1:53003118-53003137 Msa0555190:CDS 35.0%
! AACTTTCTGAAGGGTAATAG+AGG - chr4_1:53003128-53003147 Msa0555190:CDS 35.0%
! ACTTTCTGAAGGGTAATAGA+GGG - chr4_1:53003129-53003148 Msa0555190:CDS 35.0%
TACAAGCCAATGAATTGAAC+TGG + chr4_1:53003193-53003212 None:intergenic 35.0%
!! CTGAATGTGCTTCTAGAATT+TGG + chr4_1:53003233-53003252 None:intergenic 35.0%
TATCTCTTCAGTCACATTTG+AGG - chr4_1:53003265-53003284 Msa0555190:intron 35.0%
GCTTCATAGCATAAAAGTGA+AGG + chr4_1:53003306-53003325 None:intergenic 35.0%
TTATGCTATGAAGCACGATA+CGG - chr4_1:53003312-53003331 Msa0555190:intron 35.0%
TCATAGGATTAGACATGTCT+TGG + chr4_1:53003444-53003463 None:intergenic 35.0%
TTTGAGTATTACAAGCCTTG+AGG - chr4_1:53003666-53003685 Msa0555190:CDS 35.0%
GTAGAAAATTGCCACAAAAG+TGG + chr4_1:53003838-53003857 None:intergenic 35.0%
CCCTCTCAAAAAATAAAGAG+TGG + chr4_1:53003933-53003952 None:intergenic 35.0%
!!! TTTTTTAGGGATGTTGGGTA+TGG - chr4_1:53004386-53004405 Msa0555190:intron 35.0%
TTGACAAACCTTGCAATTTC+GGG + chr4_1:53004477-53004496 None:intergenic 35.0%
TGATGTTTCGTTAACTACAG+GGG + chr4_1:53005853-53005872 None:intergenic 35.0%
TAACGTTATGCAATTTCAGG+GGG + chr4_1:53005825-53005844 None:intergenic 35.0%
TAACAGAAAAATTGACGGAG+GGG + chr4_1:53005792-53005811 None:intergenic 35.0%
GTTAACAGAAAAATTGACGG+AGG + chr4_1:53005790-53005809 None:intergenic 35.0%
GCACATAAGTGTACAATTTC+AGG - chr4_1:53005741-53005760 Msa0555190:intron 35.0%
CATAAGTGTACAATTTCAGG+GGG - chr4_1:53005744-53005763 Msa0555190:intron 35.0%
ATAAGTGTACAATTTCAGGG+GGG - chr4_1:53005745-53005764 Msa0555190:intron 35.0%
GTTAACAGAAAAATTGACGG+AGG - chr4_1:53005790-53005809 Msa0555190:intron 35.0%
TAACAGAAAAATTGACGGAG+GGG - chr4_1:53005792-53005811 Msa0555190:intron 35.0%
TAACGTTATGCAATTTCAGG+GGG - chr4_1:53005825-53005844 Msa0555190:intron 35.0%
TGATGTTTCGTTAACTACAG+GGG - chr4_1:53005853-53005872 Msa0555190:intron 35.0%
GATGAAACTTACAATTTCGG+GGG - chr4_1:53005883-53005902 Msa0555190:intron 35.0%
ATGAAACTTACAATTTCGGG+GGG - chr4_1:53005884-53005903 Msa0555190:intron 35.0%
!!! AACTACTAGTATTTTGGCAG+TGG - chr4_1:53005980-53005999 Msa0555190:intron 35.0%
TTGTTTGCTTGAATGTTGCA+TGG + chr4_1:53006238-53006257 None:intergenic 35.0%
TAAAGAGTGAATTGTTGTGG+TGG + chr4_1:53006262-53006281 None:intergenic 35.0%
! CGGATCTTGAGATATTTTGT+TGG + chr4_1:53006313-53006332 None:intergenic 35.0%
CATGGGACCATGAAAAAAAA+AGG + chr4_1:53006670-53006689 None:intergenic 35.0%
!!! CTTTTTTTTTCATGGTCCCA+TGG - chr4_1:53006668-53006687 Msa0555190:intron 35.0%
TTCATTACATTTGCGGAAAC+AGG + chr4_1:53006695-53006714 None:intergenic 35.0%
GACCTTGATCATGATAAAGA+AGG - chr4_1:53007052-53007071 Msa0555190:intron 35.0%
GTCCTTCTTTATCATGATCA+AGG + chr4_1:53007057-53007076 None:intergenic 35.0%
GACTTGAAATTCATGACAGA+TGG - chr4_1:53007256-53007275 Msa0555190:intron 35.0%
TGACAGATGGGATTATATTC+AGG - chr4_1:53007269-53007288 Msa0555190:intron 35.0%
!! CGTTTTGTTGCATTCTACAA+AGG - chr4_1:53007321-53007340 Msa0555190:intron 35.0%
TCTACAAAGGACTACAAACT+TGG - chr4_1:53007334-53007353 Msa0555190:intron 35.0%
CTACAAAGGACTACAAACTT+GGG - chr4_1:53007335-53007354 Msa0555190:intron 35.0%
CAAACCAAAGTCTTCTTCTT+AGG - chr4_1:53007390-53007409 Msa0555190:intron 35.0%
!! ATAACTTACTGGTAATGGAC+AGG + chr4_1:53007423-53007442 None:intergenic 35.0%
ATATGGTGTATGGTATTAGG+GGG - chr4_1:53007529-53007548 Msa0555190:CDS 35.0%
!!! AGTGAGAAAGTGCCATATTT+TGG - chr4_1:53007585-53007604 Msa0555190:CDS 35.0%
ATAACACCACTATAACCTTC+AGG + chr4_1:53007735-53007754 None:intergenic 35.0%
! TGAAGGTTATAGTGGTGTTA+TGG - chr4_1:53007734-53007753 Msa0555190:CDS 35.0%
GGAAAAAAACAACTAGAGAG+AGG - chr4_1:53007839-53007858 Msa0555190:CDS 35.0%
GATGTTTCGGTTCTTGTAAT+TGG - chr4_1:53007944-53007963 Msa0555190:CDS 35.0%
TGTAATTGGGCAATAAAGGT+TGG - chr4_1:53007958-53007977 Msa0555190:CDS 35.0%
AAAGATGTGGAGAGAGAAAG+AGG + chr4_1:53002593-53002612 None:intergenic 40.0%
GATGCACTGAAACCATTTCT+TGG + chr4_1:53002726-53002745 None:intergenic 40.0%
!! GTAACTTGTTCCGTGGTAAA+TGG - chr4_1:53002869-53002888 Msa0555190:three_prime_UTR 40.0%
! CAAGTTGAAGGGTTATAGAG+AGG + chr4_1:53002913-53002932 None:intergenic 40.0%
ATGGCATCCACCTATATTTC+TGG + chr4_1:53002993-53003012 None:intergenic 40.0%
! TCTTCAGTCACATTTGAGGT+TGG - chr4_1:53003269-53003288 Msa0555190:intron 40.0%
! GATTAGACATGTCTTGGTGT+CGG + chr4_1:53003438-53003457 None:intergenic 40.0%
GGCATAAAAGCTATGAAGCA+CGG + chr4_1:53003471-53003490 None:intergenic 40.0%
TATGCACACTTCTAACCTCA+AGG + chr4_1:53003684-53003703 None:intergenic 40.0%
! GAATTGATGTGATTGGTTGG+AGG - chr4_1:53003737-53003756 Msa0555190:intron 40.0%
AGAAAATGTCCCCAACACAA+AGG + chr4_1:53003767-53003786 None:intergenic 40.0%
TGACAAACCTTGCAATTTCG+GGG + chr4_1:53004476-53004495 None:intergenic 40.0%
ATGTTTCGTTAACTACAGGG+GGG + chr4_1:53005855-53005874 None:intergenic 40.0%
GATGTTTCGTTAACTACAGG+GGG + chr4_1:53005854-53005873 None:intergenic 40.0%
AACGTTATGCAATTTCAGGG+GGG + chr4_1:53005826-53005845 None:intergenic 40.0%
AACAGAAAAATTGACGGAGG+GGG + chr4_1:53005793-53005812 None:intergenic 40.0%
AACAGAAAAATTGACGGAGG+GGG - chr4_1:53005793-53005812 Msa0555190:intron 40.0%
AACGTTATGCAATTTCAGGG+GGG - chr4_1:53005826-53005845 Msa0555190:intron 40.0%
GATGTTTCGTTAACTACAGG+GGG - chr4_1:53005854-53005873 Msa0555190:intron 40.0%
ATGTTTCGTTAACTACAGGG+GGG - chr4_1:53005855-53005874 Msa0555190:intron 40.0%
TGAAACTTACAATTTCGGGG+GGG - chr4_1:53005885-53005904 Msa0555190:intron 40.0%
CAGTTTAACAGCTGTTGTAG+TGG - chr4_1:53006081-53006100 Msa0555190:intron 40.0%
GTGTGAGAGAATCAAACTCA+TGG + chr4_1:53006134-53006153 None:intergenic 40.0%
TTGCTTGAATGTTGCATGGA+GGG + chr4_1:53006234-53006253 None:intergenic 40.0%
TTTGCTTGAATGTTGCATGG+AGG + chr4_1:53006235-53006254 None:intergenic 40.0%
CAAAATATCTCAAGATCCGC+CGG - chr4_1:53006314-53006333 Msa0555190:intron 40.0%
AAGTTGTACCAAAATACCGG+CGG + chr4_1:53006333-53006352 None:intergenic 40.0%
!! CAGATTTTCTGGTAGGTGTA+TGG + chr4_1:53006749-53006768 None:intergenic 40.0%
AAGCTTGACTCAATCAAGAG+TGG - chr4_1:53007085-53007104 Msa0555190:intron 40.0%
! ATGTGTTGATCTTCAACACG+TGG - chr4_1:53007128-53007147 Msa0555190:intron 40.0%
!! AAGAAGACTTTGGTTTGTGC+TGG + chr4_1:53007387-53007406 None:intergenic 40.0%
!! TTTGGTTTGAAATACCCTGG+AGG - chr4_1:53007603-53007622 Msa0555190:CDS 40.0%
! TTGGTTTGAAATACCCTGGA+GGG - chr4_1:53007604-53007623 Msa0555190:CDS 40.0%
AGAAAAGATGCACATCCTGA+AGG - chr4_1:53007717-53007736 Msa0555190:CDS 40.0%
! AGAAGCTGATTCCAAGTATC+AGG + chr4_1:53007795-53007814 None:intergenic 40.0%
TGCAGCACTTTCTCATTGAA+AGG - chr4_1:53007818-53007837 Msa0555190:CDS 40.0%
ATTGGGCAATAAAGGTTGGA+CGG - chr4_1:53007962-53007981 Msa0555190:CDS 40.0%
ATGTGGAGAGAGAAAGAGGA+GGG + chr4_1:53002589-53002608 None:intergenic 45.0%
TGGGACCAAAACCCAAGAAA+TGG - chr4_1:53002711-53002730 Msa0555190:three_prime_UTR 45.0%
!! GGAACATGTAACTTGTTCCG+TGG - chr4_1:53002862-53002881 Msa0555190:three_prime_UTR 45.0%
TATGAAGCACGATACGGACA+TGG - chr4_1:53003318-53003337 Msa0555190:CDS 45.0%
TATGAAGCACGGACACTCAT+AGG + chr4_1:53003460-53003479 None:intergenic 45.0%
TTGGAGGCTTTCCTTTGTGT+TGG - chr4_1:53003753-53003772 Msa0555190:intron 45.0%
TGGAGGCTTTCCTTTGTGTT+GGG - chr4_1:53003754-53003773 Msa0555190:intron 45.0%
ACAAACCTTGCAATTTCGGG+GGG + chr4_1:53004474-53004493 None:intergenic 45.0%
GACAAACCTTGCAATTTCGG+GGG + chr4_1:53004475-53004494 None:intergenic 45.0%
TCAAACTCATGGCCAAGAGA+TGG + chr4_1:53006123-53006142 None:intergenic 45.0%
ATTTGCGGAAACAGGACCAT+GGG + chr4_1:53006687-53006706 None:intergenic 45.0%
TCTATACCGCACAGCATACT+TGG - chr4_1:53007027-53007046 Msa0555190:intron 45.0%
CAATCAAGAGTGGTGAAGCT+TGG - chr4_1:53007095-53007114 Msa0555190:intron 45.0%
TGATCTTCAACACGTGGCAT+TGG - chr4_1:53007134-53007153 Msa0555190:intron 45.0%
AAGGACTACAAACTTGGGCT+AGG - chr4_1:53007340-53007359 Msa0555190:intron 45.0%
! ACTACAAACTTGGGCTAGGT+GGG - chr4_1:53007344-53007363 Msa0555190:intron 45.0%
ATGGTATTAGGGGGAGAGAT+TGG - chr4_1:53007538-53007557 Msa0555190:CDS 45.0%
!! TGGTGAACAAGGTGTTGAGA+AGG - chr4_1:53007646-53007665 Msa0555190:intron 45.0%
GCACATCCTGAAGGTTATAG+TGG - chr4_1:53007726-53007745 Msa0555190:CDS 45.0%
TTCCTGGACTTCCTGATACT+TGG - chr4_1:53007781-53007800 Msa0555190:CDS 45.0%
TTCCAAGTATCAGGAAGTCC+AGG + chr4_1:53007786-53007805 None:intergenic 45.0%
!!! GTTTTTTTTTTTTTTTTTTA+GGG - chr4_1:53004373-53004392 Msa0555190:intron 5.0%
!! AAAAAAATATTAAAAAATTC+TGG - chr4_1:53004704-53004723 Msa0555190:intron 5.0%
!! TTATTAAAAATGAAAAAAAA+CGG + chr4_1:53005584-53005603 None:intergenic 5.0%
!! TTAAAAAAATTAAAAAATTC+TGG + chr4_1:53005672-53005691 None:intergenic 5.0%
!! AAAAAAAATTAAAAAAGATT+AGG + chr4_1:53006560-53006579 None:intergenic 5.0%
GATGTGGAGAGAGAAAGAGG+AGG + chr4_1:53002590-53002609 None:intergenic 50.0%
CGTCGTAGACCCATTTACCA+CGG + chr4_1:53002882-53002901 None:intergenic 50.0%
GGAGGCTTTCCTTTGTGTTG+GGG - chr4_1:53003755-53003774 Msa0555190:intron 50.0%
AAACCTTGCAATTTCGGGGG+GGG + chr4_1:53004472-53004491 None:intergenic 50.0%
CAAACCTTGCAATTTCGGGG+GGG + chr4_1:53004473-53004492 None:intergenic 50.0%
AGATCTCTATTGAGACCCCC+AGG - chr4_1:53006004-53006023 Msa0555190:intron 50.0%
ATGGCCAAGAGATGGATGAG+GGG + chr4_1:53006115-53006134 None:intergenic 50.0%
CATGGCCAAGAGATGGATGA+GGG + chr4_1:53006116-53006135 None:intergenic 50.0%
TCATGGCCAAGAGATGGATG+AGG + chr4_1:53006117-53006136 None:intergenic 50.0%
! GAATGTTGCATGGAGGGCAT+TGG + chr4_1:53006228-53006247 None:intergenic 50.0%
! CTCAAGATCCGCCGGTATTT+TGG - chr4_1:53006322-53006341 Msa0555190:intron 50.0%
CATTTGCGGAAACAGGACCA+TGG + chr4_1:53006688-53006707 None:intergenic 50.0%
ATACCGCACAGCATACTTGG+TGG - chr4_1:53007030-53007049 Msa0555190:intron 50.0%
AAGAGTGGTGAAGCTTGGAG+AGG - chr4_1:53007100-53007119 Msa0555190:intron 50.0%
TGGTGAAGCTTGGAGAGGAA+TGG - chr4_1:53007105-53007124 Msa0555190:intron 50.0%
! TCTTCAACACGTGGCATTGG+TGG - chr4_1:53007137-53007156 Msa0555190:intron 50.0%
! GACTACAAACTTGGGCTAGG+TGG - chr4_1:53007343-53007362 Msa0555190:intron 50.0%
TTCACCACCATCCAAGCCAT+TGG + chr4_1:53007633-53007652 None:intergenic 50.0%
TGGCAACTGATTGTAGCCAC+TGG - chr4_1:53007754-53007773 Msa0555190:CDS 50.0%
CACGATACGGACATGGACAC+CGG - chr4_1:53003325-53003344 Msa0555190:CDS 55.0%
AACCTTGCAATTTCGGGGGG+GGG + chr4_1:53004471-53004490 None:intergenic 55.0%
ACACCCCCTCATCCATCTCT+TGG - chr4_1:53006108-53006127 Msa0555190:intron 55.0%
TGGCCAAGAGATGGATGAGG+GGG + chr4_1:53006114-53006133 None:intergenic 55.0%
!! GCATTGGTTCAACTCCCACC+AGG + chr4_1:53006212-53006231 None:intergenic 55.0%
GGTCCACCAAGTATGCTGTG+CGG + chr4_1:53007036-53007055 None:intergenic 55.0%
CGGTTGTGAGCTTCCAGTGT+GGG + chr4_1:53007164-53007183 None:intergenic 55.0%
ACGGTTGTGAGCTTCCAGTG+TGG + chr4_1:53007165-53007184 None:intergenic 55.0%
CACTGGAAGCTCACAACCGT+AGG - chr4_1:53007165-53007184 Msa0555190:intron 55.0%
ATACCCTGGAGGGACACCAA+TGG - chr4_1:53007614-53007633 Msa0555190:CDS 55.0%
! AAGCCATTGGTGTCCCTCCA+GGG + chr4_1:53007620-53007639 None:intergenic 55.0%
! AGGGACACCAATGGCTTGGA+TGG - chr4_1:53007623-53007642 Msa0555190:intron 55.0%
! GACACCAATGGCTTGGATGG+TGG - chr4_1:53007626-53007645 Msa0555190:intron 55.0%
! GGCTTGGATGGTGGTGAACA+AGG - chr4_1:53007635-53007654 Msa0555190:intron 55.0%
TGTAGCCACTGGTGTCTTCC+TGG - chr4_1:53007765-53007784 Msa0555190:CDS 55.0%
GAAGTCCAGGAAGACACCAG+TGG + chr4_1:53007773-53007792 None:intergenic 55.0%
CATGGACACCGGACACGACA+CGG - chr4_1:53003336-53003355 Msa0555190:CDS 60.0%
GTCAGTGTCCGTGTCGTGTC+CGG + chr4_1:53003347-53003366 None:intergenic 60.0%
ACCTTGCAATTTCGGGGGGG+GGG + chr4_1:53004470-53004489 None:intergenic 60.0%
! AGAGAAGTTGGGGGGTGCAG+TGG + chr4_1:53006032-53006051 None:intergenic 60.0%
!! TGGCATTGGTGGACCCACAC+TGG - chr4_1:53007148-53007167 Msa0555190:intron 60.0%
! CAAGCCATTGGTGTCCCTCC+AGG + chr4_1:53007621-53007640 None:intergenic 60.0%
CTGGAGGGACACCAATGGCT+TGG - chr4_1:53007619-53007638 Msa0555190:intron 60.0%
TTGCAATTTCGGGGGGGGGG+GGG + chr4_1:53004467-53004486 None:intergenic 65.0%
CTTGCAATTTCGGGGGGGGG+GGG + chr4_1:53004468-53004487 None:intergenic 65.0%
CCTTGCAATTTCGGGGGGGG+GGG + chr4_1:53004469-53004488 None:intergenic 65.0%
TGCAATTTCGGGGGGGGGGG+GGG + chr4_1:53004466-53004485 None:intergenic 70.0%
CCCCCCCCCCCGAAATTGCA+AGG - chr4_1:53004466-53004485 Msa0555190:intron 70.0%
! TGGGGGGTGCAGTGGCACCT+GGG + chr4_1:53006024-53006043 None:intergenic 70.0%
! TTGGGGGGTGCAGTGGCACC+TGG + chr4_1:53006025-53006044 None:intergenic 70.0%
AATTTCGGGGGGGGGGGGGG+GGG + chr4_1:53004463-53004482 None:intergenic 75.0%
CAATTTCGGGGGGGGGGGGG+GGG + chr4_1:53004464-53004483 None:intergenic 75.0%
GCAATTTCGGGGGGGGGGGG+GGG + chr4_1:53004465-53004484 None:intergenic 75.0%
! GGGGGTGCAGTGGCACCTGG+GGG + chr4_1:53006022-53006041 None:intergenic 75.0%
! GGGGGGTGCAGTGGCACCTG+GGG + chr4_1:53006023-53006042 None:intergenic 75.0%
! ATTTCGGGGGGGGGGGGGGG+GGG + chr4_1:53004462-53004481 None:intergenic 80.0%
! TTTCGGGGGGGGGGGGGGGG+GGG + chr4_1:53004461-53004480 None:intergenic 85.0%
! TTCGGGGGGGGGGGGGGGGG+GGG + chr4_1:53004460-53004479 None:intergenic 90.0%
! TCGGGGGGGGGGGGGGGGGG+GGG + chr4_1:53004459-53004478 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 53002581 53008167 53002581 ID=Msa0555190;Name=Msa0555190
chr4_1 mRNA 53002581 53008167 53002581 ID=Msa0555190-mRNA-1;Parent=Msa0555190;Name=Msa0555190-mRNA-1;_AED=0.06;_eAED=0.06;_QI=149|1|1|1|1|1|5|331|365
chr4_1 exon 53002581 53003200 53002581 ID=Msa0555190-mRNA-1:exon:15410;Parent=Msa0555190-mRNA-1
chr4_1 exon 53003315 53003473 53003315 ID=Msa0555190-mRNA-1:exon:15409;Parent=Msa0555190-mRNA-1
chr4_1 exon 53003566 53003741 53003566 ID=Msa0555190-mRNA-1:exon:15408;Parent=Msa0555190-mRNA-1
chr4_1 exon 53007462 53007633 53007462 ID=Msa0555190-mRNA-1:exon:15407;Parent=Msa0555190-mRNA-1
chr4_1 exon 53007717 53008167 53007717 ID=Msa0555190-mRNA-1:exon:15406;Parent=Msa0555190-mRNA-1
chr4_1 five_prime_UTR 53008019 53008167 53008019 ID=Msa0555190-mRNA-1:five_prime_utr;Parent=Msa0555190-mRNA-1
chr4_1 CDS 53007717 53008018 53007717 ID=Msa0555190-mRNA-1:cds;Parent=Msa0555190-mRNA-1
chr4_1 CDS 53007462 53007633 53007462 ID=Msa0555190-mRNA-1:cds;Parent=Msa0555190-mRNA-1
chr4_1 CDS 53003566 53003741 53003566 ID=Msa0555190-mRNA-1:cds;Parent=Msa0555190-mRNA-1
chr4_1 CDS 53003315 53003473 53003315 ID=Msa0555190-mRNA-1:cds;Parent=Msa0555190-mRNA-1
chr4_1 CDS 53002912 53003200 53002912 ID=Msa0555190-mRNA-1:cds;Parent=Msa0555190-mRNA-1
chr4_1 three_prime_UTR 53002581 53002911 53002581 ID=Msa0555190-mRNA-1:three_prime_utr;Parent=Msa0555190-mRNA-1
Gene Sequence

>Msa0555190

ATGGTTTCAGTGCATCTAAATGCTCTGTTTCCAACTCTGTTTCTAACTCTGTTTCTGTTTTCCCACAAAACAAAATCAGAGGTTTTTAACTCTTTCAGCAATGAGACCAACTTTGAAGTCAGTAACATTGCAGGAACATGTAACTTGTTCCGTGGTAAATGGGTCTACGACGCTTCATATCCTCTCTATAACCCTTCAACTTGTCCTTTCATAGATCCACAGTTCAATTGTCAGAAACATGGTCGCAAAGATAAGCTTTACCAGAAATATAGGTGGATGCCATTTTCTTGTAACATGCCAAGGTTCAATGGTTTGAACTTTCTGAAGGGTAATAGAGGGAAAAAGATTATGTTTGTTGGTGACTCTTTGAGCTTAAACCAGTTCAATTCATTGGCTTGTATGATTCATGCTGCTGCACCAAATTCTAGAAGCACATTCAGACAAAGAGATGCTATCTCTTCAGTCACATTTGAGGAGTATGGGCTTGAGTTATTTCTATACCGCACAGCATACTTGGTGGACCTTGATCATGATAAAGAAGGACGAGTATTGAAGCTTGACTCAATCAAGAGTGGTGAAGCTTGGAGAGGAATGGATGTGTTGATCTTCAACACGTGGCATTGGTGGACCCACACTGGAAGCTCACAACCATGGGATTATATTCAGGAGAATAAAAAGTTGTATAAAGACATGAATCGTTTTGTTGCATTCTACAAAGGACTACAAACTTGGGCTAGGTGGGTTGAAATGAATGTTAATCCAGCACAAACCAAAGTCTTCTTCTTAGGAATTTCTCCTGTCCATTACCAGGGGAGAGATTGGAACCAACCAACAAAGTCATGCATGAGTGAGAAAGTGCCATATTTTGGTTTGAAATACCCTGGAGGGACACCAATGGCTTGGATGGTGGTGAACAAGGTGTTGAGAAGGATGAGTAAGCCAGTTTATTTCTTAGATGTGACAACTCTTTCACAATACAGAAAAGATGCACATCCTGAAGGTTATAGTGGTGTTATGGCAACTGATTGTAGCCACTGGTGTCTTCCTGGACTTCCTGATACTTGGAATCAGCTTCTCTATGCAGCACTTTCTCATTGA
Protein sequence

>Msa0555190

MVSVHLNALFPTLFLTLFLFSHKTKSEVFNSFSNETNFEVSNIAGTCNLFRGKWVYDASYPLYNPSTCPFIDPQFNCQKHGRKDKLYQKYRWMPFSCNMPRFNGLNFLKGNRGKKIMFVGDSLSLNQFNSLACMIHAAAPNSRSTFRQRDAISSVTFEEYGLELFLYRTAYLVDLDHDKEGRVLKLDSIKSGEAWRGMDVLIFNTWHWWTHTGSSQPWDYIQENKKLYKDMNRFVAFYKGLQTWARWVEMNVNPAQTKVFFLGISPVHYQGRDWNQPTKSCMSEKVPYFGLKYPGGTPMAWMVVNKVLRRMSKPVYFLDVTTLSQYRKDAHPEGYSGVMATDCSHWCLPGLPDTWNQLLYAALSH*