AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0078640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078640 MtrunA17_Chr1g0189361 98.661 224 3 0 1 224 1 224 4.50e-167 459
Msa0078640 MtrunA17_Chr7g0214241 64.651 215 64 2 13 223 14 220 7.66e-96 279
Msa0078640 MtrunA17_Chr7g0234201 73.889 180 47 0 13 192 12 191 7.67e-93 271
Msa0078640 MtrunA17_Chr4g0032201 60.377 212 77 3 12 223 10 214 1.61e-88 260
Msa0078640 MtrunA17_Chr8g0381841 62.887 194 72 0 12 205 15 208 9.99e-87 256
Msa0078640 MtrunA17_Chr3g0123821 57.820 211 86 1 12 222 14 221 3.19e-85 252
Msa0078640 MtrunA17_Chr7g0231131 54.976 211 91 1 12 222 13 219 5.80e-82 243
Msa0078640 MtrunA17_Chr2g0276941 55.093 216 92 2 8 223 9 219 8.13e-82 243
Msa0078640 MtrunA17_Chr1g0174281 55.660 212 91 3 12 222 13 222 8.14e-82 243
Msa0078640 MtrunA17_Chr3g0112681 55.157 223 92 4 1 223 1 215 2.61e-81 242
Msa0078640 MtrunA17_Chr4g0040781 57.075 212 85 3 12 223 11 216 1.93e-80 239
Msa0078640 MtrunA17_Chr2g0283131 56.604 212 86 3 12 223 11 216 5.45e-80 238
Msa0078640 MtrunA17_Chr2g0319951 63.006 173 64 0 12 184 11 183 2.71e-79 236
Msa0078640 MtrunA17_Chr4g0046261 55.189 212 89 3 12 223 11 216 4.39e-79 236
Msa0078640 MtrunA17_Chr2g0315551 56.338 213 85 4 12 223 11 216 1.44e-78 235
Msa0078640 MtrunA17_Chr2g0325091 55.660 212 87 2 12 223 9 213 8.29e-77 230
Msa0078640 MtrunA17_Chr8g0351861 51.869 214 101 1 12 223 14 227 1.11e-76 230
Msa0078640 MtrunA17_Chr8g0346421 59.239 184 74 1 7 190 20 202 2.11e-76 230
Msa0078640 MtrunA17_Chr7g0275991 58.696 184 76 0 12 195 18 201 8.36e-76 228
Msa0078640 MtrunA17_Chr6g0482721 52.582 213 93 3 12 223 10 215 8.90e-69 210
Msa0078640 MtrunA17_Chr8g0392931 51.887 212 97 2 12 223 12 218 2.97e-67 206
Msa0078640 MtrunA17_Chr4g0055651 45.283 212 100 2 12 223 6 201 1.24e-58 184
Msa0078640 MtrunA17_Chr7g0250531 45.283 212 100 3 12 223 6 201 5.77e-57 179
Msa0078640 MtrunA17_Chr2g0290891 43.602 211 115 1 13 223 5 211 2.44e-56 178
Msa0078640 MtrunA17_Chr2g0276931 51.807 166 80 0 12 177 7 172 2.76e-56 177
Msa0078640 MtrunA17_Chr8g0335471 44.811 212 102 3 12 223 6 202 7.75e-56 176
Msa0078640 MtrunA17_Chr1g0182321 42.453 212 111 2 12 222 13 214 1.23e-55 176
Msa0078640 MtrunA17_Chr1g0182301 42.453 212 111 2 12 222 13 214 1.40e-55 176
Msa0078640 MtrunA17_Chr1g0212521 42.326 215 107 4 12 222 13 214 1.00e-54 174
Msa0078640 MtrunA17_Chr6g0458081 44.131 213 113 2 12 223 4 211 1.27e-54 174
Msa0078640 MtrunA17_Chr7g0263071 49.697 165 82 1 12 175 13 177 1.92e-54 173
Msa0078640 MtrunA17_Chr4g0030911 42.453 212 110 3 12 222 13 213 2.95e-54 173
Msa0078640 MtrunA17_Chr8g0349711 44.907 216 112 4 10 223 2 212 1.31e-53 171
Msa0078640 MtrunA17_Chr2g0327911 47.059 170 88 2 8 175 9 178 4.41e-52 167
Msa0078640 MtrunA17_Chr8g0349681 43.779 217 113 3 7 223 377 584 4.23e-51 174
Msa0078640 MtrunA17_Chr8g0349681 44.505 182 98 1 2 183 166 344 7.14e-46 160
Msa0078640 MtrunA17_Chr8g0349681 47.531 162 85 0 10 171 9 170 2.25e-45 159
Msa0078640 MtrunA17_Chr3g0109721 40.385 208 105 2 16 223 12 200 1.85e-48 157
Msa0078640 MtrunA17_Chr5g0433561 38.942 208 108 3 16 223 12 200 6.07e-47 154
Msa0078640 MtrunA17_Chr8g0384311 43.716 183 100 3 12 192 11 192 1.85e-45 150
Msa0078640 MtrunA17_Chr1g0199331 44.099 161 89 1 16 175 33 193 1.51e-44 147
Msa0078640 MtrunA17_Chr7g0265001 40.187 214 113 5 12 223 14 214 4.54e-44 147
Msa0078640 MtrunA17_Chr1g0197331 40.183 219 105 5 12 223 13 212 1.26e-43 145
Msa0078640 MtrunA17_Chr1g0159481 41.026 195 103 4 12 195 15 208 1.99e-43 145
Msa0078640 MtrunA17_Chr1g0180291 41.014 217 104 6 12 222 12 210 3.43e-43 144
Msa0078640 MtrunA17_Chr3g0130271 44.767 172 91 4 12 180 10 180 1.25e-42 143
Msa0078640 MtrunA17_Chr5g0400131 39.490 157 95 0 15 171 10 166 1.38e-40 137
Msa0078640 MtrunA17_Chr4g0055081 38.854 157 96 0 15 171 10 166 2.37e-40 137
Msa0078640 MtrunA17_Chr8g0390561 40.625 160 95 0 16 175 11 170 2.83e-40 136
Msa0078640 MtrunA17_Chr3g0123971 36.313 179 108 1 15 193 10 182 3.28e-40 137
Msa0078640 MtrunA17_Chr8g0382221 38.217 157 97 0 15 171 10 166 1.40e-39 135
Msa0078640 MtrunA17_Chr4g0034871 36.310 168 100 3 14 174 8 175 3.73e-33 118
Msa0078640 MtrunA17_Chr8g0383261 37.725 167 97 2 14 173 12 178 1.01e-32 117
Msa0078640 MtrunA17_Chr6g0466301 37.126 167 98 3 14 173 8 174 4.87e-32 115
Msa0078640 MtrunA17_Chr6g0465491 37.126 167 98 3 14 173 8 174 4.87e-32 115
Msa0078640 MtrunA17_Chr1g0201121 37.126 167 98 2 14 173 8 174 5.33e-32 115
Msa0078640 MtrunA17_Chr2g0331691 35.329 167 101 3 14 173 10 176 2.73e-31 114
Msa0078640 MtrunA17_Chr4g0004661 35.928 167 100 3 14 173 64 230 1.12e-30 114
Msa0078640 MtrunA17_Chr6g0465471 32.990 194 114 5 29 206 5 198 2.59e-24 95.9
Msa0078640 MtrunA17_Chr6g0466161 32.474 194 115 5 29 206 5 198 1.19e-23 94.0
Msa0078640 MtrunA17_Chr3g0138121 30.114 176 117 5 1 175 1 171 1.09e-20 86.7
Msa0078640 MtrunA17_Chr3g0138111 30.114 176 117 5 1 175 1 171 1.21e-20 86.3
Msa0078640 MtrunA17_Chr3g0138101 30.114 176 117 5 1 175 1 171 1.33e-20 86.3
Msa0078640 MtrunA17_Chr6g0466431 36.364 99 54 1 14 112 8 97 2.49e-18 77.0
Msa0078640 MtrunA17_Chr6g0465611 36.364 99 54 1 14 112 8 97 2.49e-18 77.0
Msa0078640 MtrunA17_Chr2g0325101 30.460 174 107 5 14 175 6 177 3.42e-18 79.3
Msa0078640 MtrunA17_Chr4g0037021 30.460 174 107 5 14 175 6 177 5.12e-18 79.0
Msa0078640 MtrunA17_Chr6g0486041 28.421 190 122 5 14 191 6 193 2.83e-17 77.0
Msa0078640 MtrunA17_Chr8g0371501 30.114 176 105 6 14 175 6 177 6.29e-17 75.9
Msa0078640 MtrunA17_Chr5g0405791 30.114 176 105 6 14 175 6 177 1.09e-16 75.5
Msa0078640 MtrunA17_Chr4g0046211 33.065 124 80 3 14 136 6 127 1.29e-16 73.9
Msa0078640 MtrunA17_Chr3g0117931 28.652 178 113 6 10 175 4 179 5.23e-16 73.9
Msa0078640 MtrunA17_Chr1g0178291 32.370 173 107 4 10 182 427 589 4.05e-15 73.9
Msa0078640 MtrunA17_Chr5g0443631 24.862 181 129 3 4 178 93 272 7.66e-14 68.9
Msa0078640 MtrunA17_Chr2g0331841 44.444 72 39 1 83 153 2 73 7.16e-12 59.7
Msa0078640 MtrunA17_Chr1g0188111 33.058 121 75 3 15 134 18 133 9.45e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078640 AT5G47520.1 84.821 224 29 2 1 223 1 220 4.17e-138 386
Msa0078640 AT2G43130.1 60.811 222 79 2 3 224 1 214 2.61e-95 277
Msa0078640 AT2G31680.1 62.443 221 79 1 3 223 1 217 1.29e-94 276
Msa0078640 AT1G05810.2 61.712 222 80 2 2 223 46 262 1.78e-93 275
Msa0078640 AT1G05810.1 61.538 221 80 2 3 223 1 216 3.56e-93 272
Msa0078640 AT3G07410.1 63.470 219 75 2 6 224 4 217 8.81e-93 271
Msa0078640 AT5G47960.1 58.216 213 82 2 12 222 13 220 2.65e-86 255
Msa0078640 AT5G65270.1 66.667 177 59 0 12 188 15 191 3.10e-86 255
Msa0078640 AT5G59150.1 58.333 216 85 2 8 223 6 216 4.74e-85 251
Msa0078640 AT4G39990.1 57.277 213 85 3 12 223 15 222 1.51e-84 251
Msa0078640 AT3G12160.1 55.399 213 91 1 12 224 13 221 3.01e-84 249
Msa0078640 AT1G07410.1 57.075 212 83 3 12 223 10 213 3.07e-84 249
Msa0078640 AT3G46830.1 57.547 212 85 1 12 223 10 216 3.36e-83 247
Msa0078640 AT3G46830.2 57.547 212 85 1 12 223 10 216 3.36e-83 247
Msa0078640 AT1G09630.1 53.363 223 96 3 1 223 1 215 7.91e-82 243
Msa0078640 AT4G18430.1 55.660 212 88 2 12 223 11 216 2.46e-81 242
Msa0078640 AT5G60860.1 57.075 212 85 2 12 223 11 216 6.16e-81 241
Msa0078640 AT1G16920.1 57.547 212 83 3 12 223 11 215 6.58e-81 241
Msa0078640 AT4G18800.1 55.660 212 85 2 12 223 11 213 3.99e-80 239
Msa0078640 AT1G28550.1 53.704 216 95 2 8 223 7 217 1.02e-77 233
Msa0078640 AT1G06400.1 54.245 212 90 2 12 223 11 215 3.92e-77 231
Msa0078640 AT3G15060.1 54.460 213 89 3 12 223 11 216 7.98e-77 231
Msa0078640 AT5G45750.1 53.302 212 92 2 12 223 11 215 1.26e-76 230
Msa0078640 AT2G33870.1 52.778 216 97 2 8 223 7 217 6.78e-76 228
Msa0078640 AT1G18200.1 52.511 219 98 2 12 224 11 229 1.77e-75 228
Msa0078640 AT1G73640.1 58.470 183 75 1 1 183 1 182 6.09e-73 221
Msa0078640 AT1G01200.1 58.427 178 71 2 12 186 26 203 1.55e-68 210
Msa0078640 AT5G59150.2 55.357 168 70 2 56 223 3 165 1.13e-59 185
Msa0078640 AT1G02130.1 45.283 212 101 3 12 223 6 202 1.79e-58 184
Msa0078640 AT3G11730.1 44.601 213 105 3 12 224 6 205 3.32e-57 180
Msa0078640 AT4G17170.1 43.128 211 116 1 13 223 5 211 1.34e-55 176
Msa0078640 AT4G35860.1 43.662 213 114 2 12 223 4 211 3.23e-55 176
Msa0078640 AT5G03520.1 44.601 213 106 3 12 223 13 214 4.62e-55 175
Msa0078640 AT4G17160.1 44.762 210 106 3 13 222 5 204 2.78e-54 173
Msa0078640 AT3G09900.1 43.256 215 108 4 12 223 13 216 3.14e-54 173
Msa0078640 AT3G46060.2 49.412 170 85 1 12 180 13 182 6.75e-54 172
Msa0078640 AT3G46060.3 49.412 170 85 1 12 180 13 182 6.75e-54 172
Msa0078640 AT3G46060.1 49.412 170 85 1 12 180 13 182 6.75e-54 172
Msa0078640 AT3G53610.2 42.523 214 108 4 12 222 13 214 7.13e-54 172
Msa0078640 AT3G53610.3 42.523 214 108 4 12 222 13 214 7.13e-54 172
Msa0078640 AT3G53610.1 42.523 214 108 4 12 222 13 214 7.13e-54 172
Msa0078640 AT5G59840.1 49.697 165 82 1 12 175 13 177 8.30e-54 172
Msa0078640 AT4G17530.1 43.396 212 104 2 12 223 6 201 9.86e-54 171
Msa0078640 AT5G47200.1 43.396 212 104 2 12 223 6 201 1.32e-53 171
Msa0078640 AT4G19640.1 38.942 208 108 3 16 223 12 200 7.39e-48 156
Msa0078640 AT3G54840.1 45.963 161 86 1 16 175 35 195 1.07e-45 151
Msa0078640 AT3G54840.3 45.625 160 86 1 17 175 2 161 2.11e-45 149
Msa0078640 AT3G54840.2 47.097 155 81 1 16 169 35 189 3.22e-45 149
Msa0078640 AT5G45130.1 42.945 163 93 0 16 178 12 174 5.66e-45 149
Msa0078640 AT5G45130.2 42.857 161 92 0 18 178 22 182 1.49e-43 145
Msa0078640 AT5G03530.2 41.014 217 106 7 12 223 11 210 2.23e-43 145
Msa0078640 AT5G03530.1 41.014 217 106 7 12 223 11 210 2.23e-43 145
Msa0078640 AT1G43890.3 45.783 166 87 3 12 175 11 175 1.22e-42 143
Msa0078640 AT1G43890.1 45.783 166 87 3 12 175 11 175 1.22e-42 143
Msa0078640 AT1G43890.2 45.783 166 87 3 12 175 11 175 1.22e-42 143
Msa0078640 AT4G39890.1 40.506 158 93 1 15 171 10 167 5.36e-42 142
Msa0078640 AT5G03520.2 41.477 176 91 3 49 223 40 204 1.40e-41 140
Msa0078640 AT5G10260.1 34.928 209 124 3 15 223 10 206 3.77e-41 139
Msa0078640 AT2G44610.1 39.490 157 95 0 15 171 10 166 1.12e-40 138
Msa0078640 AT4G35860.2 42.169 166 90 2 58 222 4 164 2.50e-38 131
Msa0078640 AT2G22290.1 36.943 157 99 0 15 171 10 166 1.28e-37 130
Msa0078640 AT3G09910.3 37.788 217 107 6 12 223 11 204 2.46e-37 129
Msa0078640 AT3G09910.1 37.788 217 107 6 12 223 11 204 2.46e-37 129
Msa0078640 AT3G09910.2 37.788 217 107 6 12 223 11 204 2.46e-37 129
Msa0078640 AT4G19640.2 43.846 130 73 0 16 145 12 141 5.36e-37 127
Msa0078640 AT4G19640.3 43.511 131 74 0 16 146 12 142 1.89e-36 127
Msa0078640 AT3G09910.5 39.572 187 104 4 12 193 11 193 4.52e-36 126
Msa0078640 AT3G09910.4 39.572 187 104 4 12 193 11 193 4.52e-36 126
Msa0078640 AT1G22740.1 38.323 167 96 2 14 173 8 174 1.23e-34 122
Msa0078640 AT5G64990.1 35.714 154 99 0 15 168 8 161 2.54e-33 119
Msa0078640 AT1G52280.1 37.647 170 99 4 14 176 8 177 4.34e-33 119
Msa0078640 AT3G18820.1 37.500 168 98 4 14 174 8 175 1.62e-32 117
Msa0078640 AT3G16100.1 37.725 167 97 3 14 173 8 174 5.98e-32 115
Msa0078640 AT2G21880.1 36.970 165 97 4 14 171 9 173 8.96e-31 113
Msa0078640 AT4G09720.1 33.641 217 118 5 14 223 8 205 9.23e-31 112
Msa0078640 AT5G64990.2 34.161 161 99 1 15 168 8 168 1.26e-30 112
Msa0078640 AT5G39620.1 34.404 218 114 7 15 223 6 203 5.28e-30 110
Msa0078640 AT4G09720.4 32.883 222 118 5 14 223 8 210 8.94e-30 110
Msa0078640 AT4G09720.3 32.456 228 117 5 14 223 8 216 5.11e-29 108
Msa0078640 AT1G49300.2 35.152 165 100 4 14 171 8 172 5.09e-28 105
Msa0078640 AT1G49300.1 35.152 165 100 4 14 171 8 172 5.09e-28 105
Msa0078640 AT5G46025.1 47.573 103 53 1 76 177 6 108 3.16e-25 95.9
Msa0078640 AT2G21880.4 35.135 148 89 4 31 171 1 148 1.10e-22 91.3
Msa0078640 AT2G21880.3 35.135 148 89 4 31 171 1 148 1.10e-22 91.3
Msa0078640 AT4G09720.6 33.690 187 98 5 44 223 4 171 1.53e-22 90.5
Msa0078640 AT4G09720.5 33.690 187 98 5 44 223 4 171 1.53e-22 90.5
Msa0078640 AT4G09720.2 33.690 187 98 5 44 223 4 171 1.53e-22 90.5
Msa0078640 AT5G55080.1 28.571 175 121 3 1 175 1 171 5.53e-22 90.5
Msa0078640 AT2G21880.2 32.121 165 97 5 14 171 9 165 5.21e-21 87.4
Msa0078640 AT2G44690.1 32.222 180 108 5 14 181 18 195 1.14e-20 86.7
Msa0078640 AT5G20020.1 31.053 190 117 7 1 189 1 177 1.17e-20 87.0
Msa0078640 AT5G20010.1 31.053 190 117 7 1 189 1 177 1.53e-20 86.7
Msa0078640 AT5G55190.1 30.114 176 117 5 1 175 1 171 1.76e-20 86.3
Msa0078640 AT4G35020.1 31.034 174 106 6 14 175 6 177 1.83e-17 77.8
Msa0078640 AT4G35020.2 31.034 174 106 6 14 175 6 177 1.83e-17 77.8
Msa0078640 AT4G35020.3 31.034 174 106 6 14 175 6 177 1.83e-17 77.8
Msa0078640 AT5G45970.1 30.233 172 106 5 14 173 6 175 2.52e-17 77.4
Msa0078640 AT4G28950.1 29.050 179 115 5 14 182 6 182 3.99e-17 77.0
Msa0078640 AT5G62880.1 29.213 178 112 5 14 179 8 183 4.93e-17 77.0
Msa0078640 AT1G20090.1 30.460 174 107 6 14 175 5 176 5.19e-17 76.6
Msa0078640 AT1G75840.1 29.885 174 108 6 14 175 6 177 6.44e-17 76.3
Msa0078640 AT3G48040.1 29.310 174 109 5 14 175 8 179 1.26e-16 75.9
Msa0078640 AT3G51300.1 30.233 172 106 6 16 175 8 177 1.79e-16 75.1
Msa0078640 AT4G35950.1 29.310 174 109 6 14 175 6 177 3.61e-16 74.3
Msa0078640 AT2G17800.2 29.310 174 109 6 14 175 6 177 5.12e-16 73.9
Msa0078640 AT2G17800.1 29.310 174 109 6 14 175 6 177 5.12e-16 73.9
Msa0078640 AT3G48040.2 29.299 157 97 5 14 158 8 162 3.90e-14 68.6
Msa0078640 AT5G62880.2 28.662 157 98 5 14 158 8 162 2.77e-13 66.2
Msa0078640 AT4G35020.4 32.456 114 74 3 16 128 8 119 5.61e-12 62.0
Msa0078640 AT4G35020.5 32.456 114 74 3 16 128 8 119 5.61e-12 62.0
Msa0078640 AT3G22950.1 31.405 121 77 3 15 134 18 133 4.41e-11 60.1
Msa0078640 AT3G22950.2 31.405 121 77 3 15 134 18 133 4.41e-11 60.1

Find 92 sgRNAs with CRISPR-Local

Find 410 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCACAAGGTTTGTTCTTTA+TGG 0.121880 1_2:-56301375 Msa0078640:CDS
ATTGATTGGGTTTGGAAAAT+TGG 0.154373 1_2:+56306304 None:intergenic
CCCAAGAGTTGCTGACTTTC+CGG 0.175365 1_2:+56302676 None:intergenic
CCTATAGTTGACTTTGAATT+AGG 0.178199 1_2:+56302525 None:intergenic
TCTGAAAAGTTTGATTCTTT+TGG 0.196734 1_2:-56302958 Msa0078640:five_prime_UTR
ATGTTTGCTCAAAGGAATTT+TGG 0.219236 1_2:-56301047 Msa0078640:three_prime_UTR
CTGTTACTTCTGCATATTAT+AGG 0.243592 1_2:-56302413 Msa0078640:CDS
GCACTTCAAGCACAATTAAA+AGG 0.257247 1_2:-56301008 Msa0078640:three_prime_UTR
CAGCAGAAGGGGAGACAAAA+AGG 0.279423 1_2:-56301181 Msa0078640:CDS
TGTTACTTCTGCATATTATA+GGG 0.293105 1_2:-56302412 Msa0078640:CDS
AAGGGGTTGTTGTTCGAAAT+AGG 0.304511 1_2:-56301162 Msa0078640:exon
TTATAATAAGAACATAGTTT+TGG 0.311590 1_2:+56301121 None:intergenic
AAAATGCCGCTAGGTTATTC+AGG 0.313023 1_2:-56301080 Msa0078640:three_prime_UTR
GGGTGCAGTTGGAGCACTTC+TGG 0.313947 1_2:-56302391 Msa0078640:CDS
GATGCTTCCTGGATTGAAAA+TGG 0.324916 1_2:-56301239 Msa0078640:CDS
GAAGGAGGAAAGGGATTGAT+TGG 0.332599 1_2:+56306290 None:intergenic
AGGAAGTTAAAGCGCAGATA+TGG 0.333773 1_2:-56302464 Msa0078640:CDS
GGAAAGGGATTGATTGGGTT+TGG 0.343082 1_2:+56306296 None:intergenic
TAAACAACCATCATGGATTC+TGG 0.366930 1_2:+56302720 None:intergenic
AAAGTTAATAGACAGGAAAA+TGG 0.372719 1_2:-56300935 Msa0078640:three_prime_UTR
TAAAGAGTTGAAGTGTAAGT+TGG 0.375881 1_2:-56304995 Msa0078640:five_prime_UTR
TGGGAACAAGTCAGATCTTA+AGG 0.381456 1_2:-56301441 Msa0078640:CDS
TCAAGAAAGATGATGCTTCC+TGG 0.401349 1_2:-56301250 Msa0078640:CDS
ATTAGGTGATATTCTAGTAT+TGG 0.407722 1_2:-56302749 Msa0078640:intron
CCTAATTCAAAGTCAACTAT+AGG 0.411802 1_2:-56302525 Msa0078640:CDS
CTTGAGACATCATAACCTTC+CGG 0.418307 1_2:+56301276 None:intergenic
CACCCAACTGTTGCTTCATA+AGG 0.421536 1_2:-56302891 Msa0078640:intron
ACCGGAAAGTCAGCAACTCT+TGG 0.429868 1_2:-56302677 Msa0078640:five_prime_UTR
AACGTTGTCACAATACTTGT+TGG 0.431302 1_2:-56301461 Msa0078640:CDS
AAGGAGGAAAGGGATTGATT+GGG 0.465825 1_2:+56306291 None:intergenic
ACAAGGAGAGAAGTTGTTTG+AGG 0.470536 1_2:-56304950 Msa0078640:intron
CGCAGATATGGGACACAGCT+GGG 0.471236 1_2:-56302452 Msa0078640:CDS
GCGCAGATATGGGACACAGC+TGG 0.472726 1_2:-56302453 Msa0078640:CDS
GGAAGTTAAAGCGCAGATAT+GGG 0.487077 1_2:-56302463 Msa0078640:CDS
ACGTTGTCACAATACTTGTT+GGG 0.487177 1_2:-56301460 Msa0078640:CDS
TGATCTTAATGTTTGCTCAA+AGG 0.487616 1_2:-56301055 Msa0078640:three_prime_UTR
ATTTACTCGCAAGATTTGCC+AGG 0.491537 1_2:-56302560 Msa0078640:CDS
TAATTGGTGATTCAGCTGTT+GGG 0.495291 1_2:-56302590 Msa0078640:CDS
GCATATTATAGGGGTGCAGT+TGG 0.498462 1_2:-56302402 Msa0078640:CDS
TTCTGGTATATGACATCAGC+AGG 0.502132 1_2:-56302374 Msa0078640:CDS
CCGGAAAGTCAGCAACTCTT+GGG 0.509080 1_2:-56302676 Msa0078640:five_prime_UTR
TTAATTGGTGATTCAGCTGT+TGG 0.515554 1_2:-56302591 Msa0078640:CDS
CGTCAAACGTTTGATAGCAT+TGG 0.518334 1_2:-56302351 Msa0078640:CDS
GTTGATTTGTTTCTACCCAC+CGG 0.522730 1_2:-56302695 Msa0078640:five_prime_UTR
AAGTGTAAGTTGGAGTTCAA+AGG 0.529244 1_2:-56304985 Msa0078640:five_prime_UTR
TACCTTATGAAGCAACAGTT+GGG 0.534143 1_2:+56302889 None:intergenic
TATGCGATTGAAGGAGGAAA+GGG 0.541301 1_2:+56306281 None:intergenic
AAATCAAATGAGAGAGAGAA+GGG 0.541690 1_2:+56306337 None:intergenic
CAAATCAAATGAGAGAGAGA+AGG 0.544779 1_2:+56306336 None:intergenic
ATACCTTATGAAGCAACAGT+TGG 0.549284 1_2:+56302888 None:intergenic
TGATGCTGATATGCGATTGA+AGG 0.550236 1_2:+56306272 None:intergenic
GAAGGGGATCGATCAGCAGA+AGG 0.552374 1_2:-56301194 Msa0078640:CDS
TCAACAATAAACAACCATCA+TGG 0.552951 1_2:+56302713 None:intergenic
GTTACTTCTGCATATTATAG+GGG 0.554984 1_2:-56302411 Msa0078640:CDS
ACTGTTGTTCTACAACAAGA+AGG 0.557959 1_2:-56301212 Msa0078640:CDS
AGCATCATCATTTCATATCA+CGG 0.559041 1_2:-56306256 Msa0078640:intron
ATTAGGATAAAATTCATCCC+TGG 0.561389 1_2:+56302542 None:intergenic
CAACTCTTGGGACTCACAGA+TGG 0.563632 1_2:-56302664 Msa0078640:exon
CGTTTGATAGCATTGGTCGA+TGG 0.567811 1_2:-56302344 Msa0078640:CDS
CTGTTGTTCTACAACAAGAA+GGG 0.571816 1_2:-56301211 Msa0078640:CDS
AAGAGTTGCTGACTTTCCGG+TGG 0.571928 1_2:+56302679 None:intergenic
GGGACACAGCTGGGCAAGAG+AGG 0.572066 1_2:-56302443 Msa0078640:CDS
AGATCTTAAGGATGCGAGAG+AGG 0.573972 1_2:-56301429 Msa0078640:CDS
AAATCTACAACATATTAAGC+CGG 0.576659 1_2:-56301295 Msa0078640:CDS
AGGGGATCGATCAGCAGAAG+GGG 0.577182 1_2:-56301192 Msa0078640:CDS
ATATGCGATTGAAGGAGGAA+AGG 0.587575 1_2:+56306280 None:intergenic
AAGGGGATCGATCAGCAGAA+GGG 0.592624 1_2:-56301193 Msa0078640:CDS
GGTACCTACGACGGAAGGCA+AGG 0.605827 1_2:-56301408 Msa0078640:CDS
AGAGAGGTACCTACGACGGA+AGG 0.610104 1_2:-56301413 Msa0078640:CDS
TAATGAAGAAGAGAAGACAG+AGG 0.611987 1_2:-56302634 Msa0078640:CDS
AAATAAATCACATACTAGAA+CGG 0.614465 1_2:-56306368 Msa0078640:five_prime_UTR
AGAGTTGCTGACTTTCCGGT+GGG 0.615240 1_2:+56302680 None:intergenic
AAAGGACTGAGGGGAAAACA+AGG 0.618996 1_2:-56304967 Msa0078640:five_prime_UTR
TGTTGTTCTACAACAAGAAG+GGG 0.621100 1_2:-56301210 Msa0078640:CDS
AACGCCTTGCCTTCCGTCGT+AGG 0.621241 1_2:+56301404 None:intergenic
CTACAACATATTAAGCCGGA+AGG 0.622382 1_2:-56301291 Msa0078640:CDS
TTTACTCGCAAGATTTGCCA+GGG 0.623585 1_2:-56302559 Msa0078640:CDS
GTTGGAGTTCAAAGGACTGA+GGG 0.629671 1_2:-56304977 Msa0078640:five_prime_UTR
AAGGCGTTAGCTGAGGCACA+AGG 0.638041 1_2:-56301389 Msa0078640:CDS
TAAATCACATACTAGAACGG+TGG 0.638714 1_2:-56306365 Msa0078640:five_prime_UTR
GGAAGGCAAGGCGTTAGCTG+AGG 0.641771 1_2:-56301396 Msa0078640:CDS
AAAGGTCTGGATGCTGATGG+TGG 0.641841 1_2:-56302933 Msa0078640:five_prime_UTR
CCAAACCTGAAAATGCCGCT+AGG 0.648028 1_2:-56301089 Msa0078640:three_prime_UTR
GACAAAGGTCTGGATGCTGA+TGG 0.652816 1_2:-56302936 Msa0078640:five_prime_UTR
GAGAAAGCCAGAATCCATGA+TGG 0.653639 1_2:-56302727 Msa0078640:five_prime_UTR
CTCAAATAATTAATACTCCG+AGG 0.656544 1_2:-56306416 Msa0078640:five_prime_UTR
TGCTGATATGCGATTGAAGG+AGG 0.673397 1_2:+56306275 None:intergenic
AGTTGGAGTTCAAAGGACTG+AGG 0.676669 1_2:-56304978 Msa0078640:five_prime_UTR
GTGTTCAATTAATGAAACTG+CGG 0.681822 1_2:+56300964 None:intergenic
TTGGAGTTCAAAGGACTGAG+GGG 0.715065 1_2:-56304976 Msa0078640:five_prime_UTR
ATCAATCCTGAATAACCTAG+CGG 0.716390 1_2:+56301074 None:intergenic
TGCGAGAGAGGTACCTACGA+CGG 0.743487 1_2:-56301417 Msa0078640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTAATTTATCTATATC+TGG - chr1_2:56301688-56301707 Msa0078640:intron 10.0%
!! TTATTAATTTATCTATATCT+GGG - chr1_2:56301689-56301708 Msa0078640:intron 10.0%
!! CTAAAAATCATATAAAAAAT+AGG + chr1_2:56301862-56301881 None:intergenic 10.0%
!! GTTTGAAAAAAAAAAAAAAA+AGG + chr1_2:56303197-56303216 None:intergenic 10.0%
!!! TAATCTTAAGATTTATTTTT+TGG - chr1_2:56304479-56304498 Msa0078640:intron 10.0%
!!! AATTTTGTTTATTTACATAT+AGG + chr1_2:56305230-56305249 None:intergenic 10.0%
!! AAAAAAAAAAAAAACGTATA+TGG + chr1_2:56305499-56305518 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTAAGAAG+GGG - chr1_2:56305510-56305529 Msa0078640:intron 10.0%
!! ATATAATAATGAATGAAAGA+TGG + chr1_2:56301244-56301263 None:intergenic 15.0%
!! AATAAATGTACAAAATTAGT+TGG - chr1_2:56301333-56301352 Msa0078640:CDS 15.0%
!!! TTTTTTATATGATTTTTAGC+AGG - chr1_2:56301863-56301882 Msa0078640:intron 15.0%
!!! ATGATGAAACAAATATTTTT+GGG - chr1_2:56303289-56303308 Msa0078640:intron 15.0%
!! AAGAATTATGTAAAATTGAA+TGG - chr1_2:56304221-56304240 Msa0078640:intron 15.0%
!! TTTATGATACTGAAAATTAA+TGG - chr1_2:56305160-56305179 Msa0078640:intron 15.0%
!!! TTATAATAAGAACATAGTTT+TGG + chr1_2:56306218-56306237 None:intergenic 15.0%
!! AAATAAATCACATACTAGAA+CGG - chr1_2:56300968-56300987 Msa0078640:three_prime_UTR 20.0%
!! ACAATGAATGAATGAAATTT+GGG + chr1_2:56301169-56301188 None:intergenic 20.0%
!! AACAATGAATGAATGAAATT+TGG + chr1_2:56301170-56301189 None:intergenic 20.0%
!!! ATACATTTTGACATAATAAC+AGG - chr1_2:56302307-56302326 Msa0078640:intron 20.0%
!!! TACATTTTGACATAATAACA+GGG - chr1_2:56302308-56302327 Msa0078640:intron 20.0%
!! AAATATTAGAAATTGTGGTT+GGG + chr1_2:56302827-56302846 None:intergenic 20.0%
!! TAAATATTAGAAATTGTGGT+TGG + chr1_2:56302828-56302847 None:intergenic 20.0%
!! AATAACTATCAACCTTAATT+TGG - chr1_2:56303086-56303105 Msa0078640:intron 20.0%
!!! GATGATGAAACAAATATTTT+TGG - chr1_2:56303288-56303307 Msa0078640:intron 20.0%
!!! TGATGAAACAAATATTTTTG+GGG - chr1_2:56303290-56303309 Msa0078640:intron 20.0%
!!! AATAAGTTGATAACATTTTC+AGG + chr1_2:56303373-56303392 None:intergenic 20.0%
!! CACATTAATATAATAATTGC+AGG - chr1_2:56303791-56303810 Msa0078640:intron 20.0%
!! TGGTGATAGTTATAAATTTA+TGG - chr1_2:56304132-56304151 Msa0078640:intron 20.0%
!! AATTTATGGAAATGTATTTC+AGG - chr1_2:56304146-56304165 Msa0078640:intron 20.0%
!! ATTTATGGAAATGTATTTCA+GGG - chr1_2:56304147-56304166 Msa0078640:intron 20.0%
!!! CAATTAAGACAATTTTGAAA+AGG + chr1_2:56304732-56304751 None:intergenic 20.0%
!!! CTTTTCAAAATTGTCTTAAT+TGG - chr1_2:56304730-56304749 Msa0078640:intron 20.0%
!!! TAATTTCCATTTTTTGAGTT+TGG + chr1_2:56304846-56304865 None:intergenic 20.0%
!! ACTCAAAAAATGGAAATTAA+CGG - chr1_2:56304847-56304866 Msa0078640:intron 20.0%
!! AAAGAACAAGAAAAATTTCA+AGG + chr1_2:56305068-56305087 None:intergenic 20.0%
!!! AACTTTAGAGATTAAATTGA+GGG + chr1_2:56305326-56305345 None:intergenic 20.0%
!!! AAACTTTAGAGATTAAATTG+AGG + chr1_2:56305327-56305346 None:intergenic 20.0%
!!! AAAAACTTTAGAAACTAAGT+TGG + chr1_2:56305362-56305381 None:intergenic 20.0%
!! AGTCTAAGTATATGAAAATA+TGG + chr1_2:56305463-56305482 None:intergenic 20.0%
!! ATATACTTAGACTAAAATGA+GGG - chr1_2:56305470-56305489 Msa0078640:intron 20.0%
! AATGAATGAATGAAATTTGG+GGG + chr1_2:56301167-56301186 None:intergenic 25.0%
! CAATGAATGAATGAAATTTG+GGG + chr1_2:56301168-56301187 None:intergenic 25.0%
! ATGTACAAAATTAGTTGGAT+TGG - chr1_2:56301338-56301357 Msa0078640:CDS 25.0%
!! CAATAATTTGAGATAGAGAA+GGG - chr1_2:56301600-56301619 Msa0078640:intron 25.0%
! TGAAAAACTGTATGTTTACA+TGG + chr1_2:56301661-56301680 None:intergenic 25.0%
!!! TTTTTTTTTTTCCCTATCTC+AGG - chr1_2:56301722-56301741 Msa0078640:intron 25.0%
!! TTGATTAAGTTTTTCTTGAC+AGG + chr1_2:56301816-56301835 None:intergenic 25.0%
! CTTAATCAAACCATTAAAAG+AGG - chr1_2:56301827-56301846 Msa0078640:intron 25.0%
! GTGAAGCTAAATTTATTTAG+AGG - chr1_2:56301981-56302000 Msa0078640:intron 25.0%
! TATCAAGAATCATGATTCAA+AGG + chr1_2:56302194-56302213 None:intergenic 25.0%
! CTTTAAGCATTAAATAAGAC+AGG + chr1_2:56302249-56302268 None:intergenic 25.0%
! CTCTTAACACTTAATCATTT+GGG + chr1_2:56302480-56302499 None:intergenic 25.0%
! ACTCTTAACACTTAATCATT+TGG + chr1_2:56302481-56302500 None:intergenic 25.0%
!! CTGACAATTTGTTTATAAGT+GGG - chr1_2:56302523-56302542 Msa0078640:CDS 25.0%
!! TGACAATTTGTTTATAAGTG+GGG - chr1_2:56302524-56302543 Msa0078640:CDS 25.0%
!! CTGACAATTTGTTTATAAGT+GGG - chr1_2:56302523-56302542 Msa0078640:CDS 25.0%
!! TGACAATTTGTTTATAAGTG+GGG - chr1_2:56302524-56302543 Msa0078640:CDS 25.0%
! GTGCTAAATATTAGAAATTG+TGG + chr1_2:56302832-56302851 None:intergenic 25.0%
!! TAAGTTCACTCTAAAAAAAC+TGG - chr1_2:56302932-56302951 Msa0078640:five_prime_UTR 25.0%
! GCATAACAAAAATCAAAGTA+TGG + chr1_2:56303152-56303171 None:intergenic 25.0%
!!! ACTTTGATTTTTGTTATGCT+AGG - chr1_2:56303153-56303172 Msa0078640:intron 25.0%
!! TTTTCAAACTATTTTATGCG+AGG - chr1_2:56303208-56303227 Msa0078640:intron 25.0%
!!! CCAAGACTCTAAAATTATTT+GGG + chr1_2:56303605-56303624 None:intergenic 25.0%
!!! CCAAATAATTTTAGAGTCTT+GGG - chr1_2:56303603-56303622 Msa0078640:intron 25.0%
!! ATATCTAAAACATCATGTTC+TGG + chr1_2:56303872-56303891 None:intergenic 25.0%
!!! AAAAAGGCTCTAAATTTTTC+TGG - chr1_2:56303952-56303971 Msa0078640:intron 25.0%
! AAGTTTACCATAGTTTATGA+TGG + chr1_2:56303988-56304007 None:intergenic 25.0%
! TAGTAAAATTATACCCAGAA+GGG + chr1_2:56304324-56304343 None:intergenic 25.0%
!! TTCTGGGTATAATTTTACTA+CGG - chr1_2:56304324-56304343 Msa0078640:intron 25.0%
!! TCTGAAAAGTTTGATTCTTT+TGG - chr1_2:56304378-56304397 Msa0078640:intron 25.0%
! ATTAGGTGATATTCTAGTAT+TGG - chr1_2:56304587-56304606 Msa0078640:intron 25.0%
! AAAAATGGAAATTAACGGAA+AGG - chr1_2:56304852-56304871 Msa0078640:intron 25.0%
!! TGTTACTTCTGCATATTATA+GGG - chr1_2:56304924-56304943 Msa0078640:intron 25.0%
!!! TAAGCAATCTTTGAAGTATA+TGG - chr1_2:56305390-56305409 Msa0078640:intron 25.0%
!!! TATATGCTTTTAAGATGCTA+GGG - chr1_2:56305428-56305447 Msa0078640:intron 25.0%
! CATATACTTAGACTAAAATG+AGG - chr1_2:56305469-56305488 Msa0078640:intron 25.0%
! ACAATAAAACTTTACACTGT+TGG + chr1_2:56305648-56305667 None:intergenic 25.0%
! TGAATCAAAGCAAAAACAAA+AGG + chr1_2:56305763-56305782 None:intergenic 25.0%
! AAATCTACAACATATTAAGC+CGG - chr1_2:56306041-56306060 Msa0078640:intron 25.0%
! AAAGTTAATAGACAGGAAAA+TGG - chr1_2:56306401-56306420 Msa0078640:five_prime_UTR 25.0%
CTCAAATAATTAATACTCCG+AGG - chr1_2:56300920-56300939 Msa0078640:three_prime_UTR 30.0%
AAATCAAATGAGAGAGAGAA+GGG + chr1_2:56301002-56301021 None:intergenic 30.0%
ATTGATTGGGTTTGGAAAAT+TGG + chr1_2:56301035-56301054 None:intergenic 30.0%
AGCATCATCATTTCATATCA+CGG - chr1_2:56301080-56301099 Msa0078640:three_prime_UTR 30.0%
TATGTACTCGTAACAAGTTA+GGG + chr1_2:56301287-56301306 None:intergenic 30.0%
ATAGACTTCAAAATCCCATA+TGG - chr1_2:56301483-56301502 Msa0078640:intron 30.0%
TAGACTTCAAAATCCCATAT+GGG - chr1_2:56301484-56301503 Msa0078640:intron 30.0%
AATTCTACATTGTCCCATAT+GGG + chr1_2:56301500-56301519 None:intergenic 30.0%
TAATTCTACATTGTCCCATA+TGG + chr1_2:56301501-56301520 None:intergenic 30.0%
CCTTCTCTATCTCAAATTAT+TGG + chr1_2:56301602-56301621 None:intergenic 30.0%
! CCAATAATTTGAGATAGAGA+AGG - chr1_2:56301599-56301618 Msa0078640:intron 30.0%
TCAAACCATTAAAAGAGGTT+TGG - chr1_2:56301832-56301851 Msa0078640:intron 30.0%
CAAAAGTCTTTCTCTCATTA+AGG + chr1_2:56301926-56301945 None:intergenic 30.0%
!!! AGACTTTTGTTTGTTGTTGA+AGG - chr1_2:56301937-56301956 Msa0078640:intron 30.0%
! TTTAGCTTCACAGACTAAAA+AGG + chr1_2:56301972-56301991 None:intergenic 30.0%
TCCCAGATATAAAGTCATTT+GGG - chr1_2:56302062-56302081 Msa0078640:intron 30.0%
ACCCAAATGACTTTATATCT+GGG + chr1_2:56302066-56302085 None:intergenic 30.0%
CTTTAGTAGTGTTAGTTACA+TGG - chr1_2:56302143-56302162 Msa0078640:intron 30.0%
TTCAAAGGAGATGATTTCTA+TGG + chr1_2:56302179-56302198 None:intergenic 30.0%
TTGCCTTTGGTTATATATAC+AGG - chr1_2:56302219-56302238 Msa0078640:intron 30.0%
AGACCTGTATATATAACCAA+AGG + chr1_2:56302225-56302244 None:intergenic 30.0%
CTTGCGAAGAAATCAAAAAA+AGG + chr1_2:56302278-56302297 None:intergenic 30.0%
TAAAGAGTTGAAGTGTAAGT+TGG - chr1_2:56302341-56302360 Msa0078640:CDS 30.0%
TAGATATAAACTTCTGCAGA+AGG + chr1_2:56302433-56302452 None:intergenic 30.0%
CCACTTATAAACAAATTGTC+AGG + chr1_2:56302525-56302544 None:intergenic 30.0%
! CCTGACAATTTGTTTATAAG+TGG - chr1_2:56302522-56302541 Msa0078640:CDS 30.0%
! GACAATTTGTTTATAAGTGG+GGG - chr1_2:56302525-56302544 Msa0078640:CDS 30.0%
TGATACCATATTAGAAATCG+TGG + chr1_2:56302598-56302617 None:intergenic 30.0%
CCACTTATAAACAAATTGTC+AGG + chr1_2:56302525-56302544 None:intergenic 30.0%
! CCTGACAATTTGTTTATAAG+TGG - chr1_2:56302522-56302541 Msa0078640:CDS 30.0%
! GACAATTTGTTTATAAGTGG+GGG - chr1_2:56302525-56302544 Msa0078640:CDS 30.0%
! TTTGCCAACAAATGTTTTTC+AGG - chr1_2:56302902-56302921 Msa0078640:five_prime_UTR 30.0%
! TTGCCAACAAATGTTTTTCA+GGG - chr1_2:56302903-56302922 Msa0078640:five_prime_UTR 30.0%
! TTCACTCTAAAAAAACTGGT+GGG - chr1_2:56302936-56302955 Msa0078640:five_prime_UTR 30.0%
TTCATTGATCTAACCATAAC+TGG - chr1_2:56303034-56303053 Msa0078640:intron 30.0%
TCATTGATCTAACCATAACT+GGG - chr1_2:56303035-56303054 Msa0078640:intron 30.0%
GCAAACAGATTTCCAAATTA+AGG + chr1_2:56303101-56303120 None:intergenic 30.0%
CTTCGTTAAAACACGATAAA+AGG + chr1_2:56303257-56303276 None:intergenic 30.0%
!!! CTTTTATCGTGTTTTAACGA+AGG - chr1_2:56303255-56303274 Msa0078640:intron 30.0%
!!! GTTGATAACATTTTCAGGAA+TGG + chr1_2:56303368-56303387 None:intergenic 30.0%
! TGTGAAGAAAAGAAGCATAA+AGG + chr1_2:56303408-56303427 None:intergenic 30.0%
!!! CCCAAATAATTTTAGAGTCT+TGG - chr1_2:56303602-56303621 Msa0078640:intron 30.0%
!! CCCAAGACTCTAAAATTATT+TGG + chr1_2:56303606-56303625 None:intergenic 30.0%
!!! TTTTATTGGGGACTAGTTAT+TGG + chr1_2:56303673-56303692 None:intergenic 30.0%
! ATGTCAGTAGGCATTTTATT+GGG + chr1_2:56303686-56303705 None:intergenic 30.0%
! AATGTCAGTAGGCATTTTAT+TGG + chr1_2:56303687-56303706 None:intergenic 30.0%
AATAAGTTGCTAGAGGAATA+GGG + chr1_2:56303722-56303741 None:intergenic 30.0%
ATGTGCAACAGTTATCTATT+AGG + chr1_2:56303776-56303795 None:intergenic 30.0%
AGTAACTGCCTAATAATAGT+AGG - chr1_2:56303824-56303843 Msa0078640:intron 30.0%
TTCCCCTCACAAAATTAAAA+AGG - chr1_2:56303936-56303955 Msa0078640:intron 30.0%
!!! AGCCTTTTTAATTTTGTGAG+GGG + chr1_2:56303941-56303960 None:intergenic 30.0%
!!! GAGCCTTTTTAATTTTGTGA+GGG + chr1_2:56303942-56303961 None:intergenic 30.0%
!!! AGAGCCTTTTTAATTTTGTG+AGG + chr1_2:56303943-56303962 None:intergenic 30.0%
CATTCATCCATCATAAACTA+TGG - chr1_2:56303978-56303997 Msa0078640:intron 30.0%
! ATCATGTGTGAGTAACATTT+TGG - chr1_2:56304016-56304035 Msa0078640:intron 30.0%
TTGCAAGATCTGTACTTTAT+TGG - chr1_2:56304112-56304131 Msa0078640:intron 30.0%
!! GGTATAAGTTTTATCTGCAA+AGG + chr1_2:56304294-56304313 None:intergenic 30.0%
GTAGTAAAATTATACCCAGA+AGG + chr1_2:56304325-56304344 None:intergenic 30.0%
TACTAAAAACTGATGCTTTC+AGG - chr1_2:56304352-56304371 Msa0078640:intron 30.0%
! AGTTTGATTCTTTTGGACAA+AGG - chr1_2:56304385-56304404 Msa0078640:intron 30.0%
CAAAAACTACAAAAGAAAGC+TGG + chr1_2:56304541-56304560 None:intergenic 30.0%
TATCACCTAATATGAGAACA+AGG + chr1_2:56304578-56304597 None:intergenic 30.0%
TCAACAATAAACAACCATCA+TGG + chr1_2:56304626-56304645 None:intergenic 30.0%
ATTAGGATAAAATTCATCCC+TGG + chr1_2:56304797-56304816 None:intergenic 30.0%
! CCTATAGTTGACTTTGAATT+AGG + chr1_2:56304814-56304833 None:intergenic 30.0%
CCTAATTCAAAGTCAACTAT+AGG - chr1_2:56304811-56304830 Msa0078640:intron 30.0%
AGAGTTCCAAACTCAAAAAA+TGG - chr1_2:56304837-56304856 Msa0078640:intron 30.0%
! CTGTTACTTCTGCATATTAT+AGG - chr1_2:56304923-56304942 Msa0078640:intron 30.0%
GTTACTTCTGCATATTATAG+GGG - chr1_2:56304925-56304944 Msa0078640:intron 30.0%
TCTTGTTCTTTCTATGTTTG+AGG - chr1_2:56305077-56305096 Msa0078640:intron 30.0%
! TATGTTTGAGGTAAATGATC+AGG - chr1_2:56305089-56305108 Msa0078640:intron 30.0%
TTTCTCACTAAACTTGACAT+TGG - chr1_2:56305121-56305140 Msa0078640:intron 30.0%
! TGAAAATTAATGGCCCTTTT+TGG - chr1_2:56305170-56305189 Msa0078640:intron 30.0%
! GAAAATTAATGGCCCTTTTT+GGG - chr1_2:56305171-56305190 Msa0078640:intron 30.0%
! AAAATTAATGGCCCTTTTTG+GGG - chr1_2:56305172-56305191 Msa0078640:intron 30.0%
CATTAAACTTACCCCAAAAA+GGG + chr1_2:56305186-56305205 None:intergenic 30.0%
!! ATGGCCTTATAGTACTTATA+TGG - chr1_2:56305203-56305222 Msa0078640:intron 30.0%
AGGACCATATAAGTACTATA+AGG + chr1_2:56305210-56305229 None:intergenic 30.0%
!!! GTATATGCTTTTAAGATGCT+AGG - chr1_2:56305427-56305446 Msa0078640:intron 30.0%
! GGCTAATGGTTTACTATTTT+AGG - chr1_2:56305606-56305625 Msa0078640:intron 30.0%
TACATGTACACACATATTGA+TGG - chr1_2:56305727-56305746 Msa0078640:intron 30.0%
AAACATGTACTCGCATATAT+TGG - chr1_2:56305784-56305803 Msa0078640:intron 30.0%
TGATCTTAATGTTTGCTCAA+AGG - chr1_2:56306281-56306300 Msa0078640:five_prime_UTR 30.0%
! ATGTTTGCTCAAAGGAATTT+TGG - chr1_2:56306289-56306308 Msa0078640:five_prime_UTR 30.0%
!!! GAATTTTGGAGTAGAAATTG+TGG - chr1_2:56306303-56306322 Msa0078640:five_prime_UTR 30.0%
GTGTTCAATTAATGAAACTG+CGG + chr1_2:56306375-56306394 None:intergenic 30.0%
TAAATCACATACTAGAACGG+TGG - chr1_2:56300971-56300990 Msa0078640:three_prime_UTR 35.0%
CAAATCAAATGAGAGAGAGA+AGG + chr1_2:56301003-56301022 None:intergenic 35.0%
GAGTAAACTGAAATTTGAGC+AGG + chr1_2:56301200-56301219 None:intergenic 35.0%
GTATGTACTCGTAACAAGTT+AGG + chr1_2:56301288-56301307 None:intergenic 35.0%
! AGCATATAGAACCATTGGTT+AGG - chr1_2:56301552-56301571 Msa0078640:intron 35.0%
TAATCTACACTCCTAACCAA+TGG + chr1_2:56301566-56301585 None:intergenic 35.0%
! TAGGAGTGTAGATTAGATAG+AGG - chr1_2:56301571-56301590 Msa0078640:intron 35.0%
ACCATTAAAAGAGGTTTGGA+TGG - chr1_2:56301836-56301855 Msa0078640:intron 35.0%
GTCCCAGATATAAAGTCATT+TGG - chr1_2:56302061-56302080 Msa0078640:intron 35.0%
CACCCAAATGACTTTATATC+TGG + chr1_2:56302067-56302086 None:intergenic 35.0%
TCTTGATATTGTCTTGCCTT+TGG - chr1_2:56302206-56302225 Msa0078640:intron 35.0%
! AAGTGTAAGTTGGAGTTCAA+AGG - chr1_2:56302351-56302370 Msa0078640:CDS 35.0%
CCATATTAGAAATCGTGGTT+GGG + chr1_2:56302593-56302612 None:intergenic 35.0%
ACCATATTAGAAATCGTGGT+TGG + chr1_2:56302594-56302613 None:intergenic 35.0%
TGTTATCAGGTTTCCGTTAT+CGG - chr1_2:56302646-56302665 Msa0078640:CDS 35.0%
TGAAGCGTGAACATAAATGA+CGG + chr1_2:56302677-56302696 None:intergenic 35.0%
TCTTGAGTCGAATCTCTAAA+AGG + chr1_2:56302854-56302873 None:intergenic 35.0%
!! TGCCAACAAATGTTTTTCAG+GGG - chr1_2:56302904-56302923 Msa0078640:five_prime_UTR 35.0%
! GTTCACTCTAAAAAAACTGG+TGG - chr1_2:56302935-56302954 Msa0078640:five_prime_UTR 35.0%
TAACACCTCAACGTATTACA+GGG + chr1_2:56303483-56303502 None:intergenic 35.0%
ATAACACCTCAACGTATTAC+AGG + chr1_2:56303484-56303503 None:intergenic 35.0%
!!! TCATTTTTTTCCCTGGCATA+CGG + chr1_2:56303507-56303526 None:intergenic 35.0%
AGTAGCCATATGATAGAAAC+TGG - chr1_2:56303537-56303556 Msa0078640:intron 35.0%
TGGTACCAGTTTCTATCATA+TGG + chr1_2:56303545-56303564 None:intergenic 35.0%
! TGTCAGTAGGCATTTTATTG+GGG + chr1_2:56303685-56303704 None:intergenic 35.0%
GAATAAGTTGCTAGAGGAAT+AGG + chr1_2:56303723-56303742 None:intergenic 35.0%
ACTAGAGAATAAGTTGCTAG+AGG + chr1_2:56303729-56303748 None:intergenic 35.0%
GTGTTAGGCCTACTATTATT+AGG + chr1_2:56303835-56303854 None:intergenic 35.0%
! TCTAAAACATCATGTTCTGG+AGG + chr1_2:56303869-56303888 None:intergenic 35.0%
!! TGAGTAACATTTTGGCACTA+AGG - chr1_2:56304024-56304043 Msa0078640:intron 35.0%
!! GAGTAACATTTTGGCACTAA+GGG - chr1_2:56304025-56304044 Msa0078640:intron 35.0%
!! AGTAACATTTTGGCACTAAG+GGG - chr1_2:56304026-56304045 Msa0078640:intron 35.0%
AAAATTATACCCAGAAGGGA+AGG + chr1_2:56304320-56304339 None:intergenic 35.0%
TACCTTATGAAGCAACAGTT+GGG + chr1_2:56304450-56304469 None:intergenic 35.0%
ATACCTTATGAAGCAACAGT+TGG + chr1_2:56304451-56304470 None:intergenic 35.0%
AAACTACAAAAGAAAGCTGG+AGG + chr1_2:56304538-56304557 None:intergenic 35.0%
CTGATCCTTGTTCTCATATT+AGG - chr1_2:56304570-56304589 Msa0078640:intron 35.0%
TAAACAACCATCATGGATTC+TGG + chr1_2:56304619-56304638 None:intergenic 35.0%
TAATGAAGAAGAGAAGACAG+AGG - chr1_2:56304702-56304721 Msa0078640:intron 35.0%
! TTAATTGGTGATTCAGCTGT+TGG - chr1_2:56304745-56304764 Msa0078640:intron 35.0%
! TAATTGGTGATTCAGCTGTT+GGG - chr1_2:56304746-56304765 Msa0078640:intron 35.0%
CCATTAAACTTACCCCAAAA+AGG + chr1_2:56305187-56305206 None:intergenic 35.0%
!!! CCTTTTTGGGGTAAGTTTAA+TGG - chr1_2:56305184-56305203 Msa0078640:intron 35.0%
TACAGAATAAAATCGCCTCA+AGG + chr1_2:56305271-56305290 None:intergenic 35.0%
TGAAGAGAGTGATACTTCAA+AGG - chr1_2:56305585-56305604 Msa0078640:intron 35.0%
AGTGATACTTCAAAGGCTAA+TGG - chr1_2:56305592-56305611 Msa0078640:intron 35.0%
ATGTCGAAGAATAACAAGAC+TGG + chr1_2:56305708-56305727 None:intergenic 35.0%
GAAATGATGATTAAGTGCAC+TGG - chr1_2:56305823-56305842 Msa0078640:intron 35.0%
AACGTTGTCACAATACTTGT+TGG - chr1_2:56305875-56305894 Msa0078640:intron 35.0%
ACGTTGTCACAATACTTGTT+GGG - chr1_2:56305876-56305895 Msa0078640:intron 35.0%
! AGTCTTTCCATTTTCAATCC+AGG + chr1_2:56306107-56306126 None:intergenic 35.0%
ACTGTTGTTCTACAACAAGA+AGG - chr1_2:56306124-56306143 Msa0078640:intron 35.0%
CTGTTGTTCTACAACAAGAA+GGG - chr1_2:56306125-56306144 Msa0078640:intron 35.0%
TGTTGTTCTACAACAAGAAG+GGG - chr1_2:56306126-56306145 Msa0078640:intron 35.0%
ATCAATCCTGAATAACCTAG+CGG + chr1_2:56306265-56306284 None:intergenic 35.0%
GCACTTCAAGCACAATTAAA+AGG - chr1_2:56306328-56306347 Msa0078640:five_prime_UTR 35.0%
! CCTGTCTATTAACTTTTTGC+AGG + chr1_2:56306397-56306416 None:intergenic 35.0%
CCTGCAAAAAGTTAATAGAC+AGG - chr1_2:56306394-56306413 Msa0078640:five_prime_UTR 35.0%
AAGGAGGAAAGGGATTGATT+GGG + chr1_2:56301048-56301067 None:intergenic 40.0%
TATGCGATTGAAGGAGGAAA+GGG + chr1_2:56301058-56301077 None:intergenic 40.0%
ATATGCGATTGAAGGAGGAA+AGG + chr1_2:56301059-56301078 None:intergenic 40.0%
TGATGCTGATATGCGATTGA+AGG + chr1_2:56301067-56301086 None:intergenic 40.0%
!!! ATTTTGAAGTCTATCCCTCG+AGG + chr1_2:56301477-56301496 None:intergenic 40.0%
GCTTGAGCATATAGAACCAT+TGG - chr1_2:56301547-56301566 Msa0078640:intron 40.0%
ATGTTTACATGGTGTCTGTG+TGG + chr1_2:56301650-56301669 None:intergenic 40.0%
AGTGTGGTTAACCTGAGATA+GGG + chr1_2:56301736-56301755 None:intergenic 40.0%
! GCCATCCAAACCTCTTTTAA+TGG + chr1_2:56301840-56301859 None:intergenic 40.0%
TTAAGGTCAGGTAAGCTACA+AGG + chr1_2:56301909-56301928 None:intergenic 40.0%
GTCTTTCTCTCATTAAGGTC+AGG + chr1_2:56301921-56301940 None:intergenic 40.0%
TTCAGACATGAGATCCCTTT+GGG + chr1_2:56302038-56302057 None:intergenic 40.0%
TCACCCTGCATCATAAACTT+TGG - chr1_2:56302090-56302109 Msa0078640:intron 40.0%
GCACCAAAGTTTATGATGCA+GGG + chr1_2:56302096-56302115 None:intergenic 40.0%
AGCACCAAAGTTTATGATGC+AGG + chr1_2:56302097-56302116 None:intergenic 40.0%
ACAAGGAGAGAAGTTGTTTG+AGG - chr1_2:56302386-56302405 Msa0078640:CDS 40.0%
AAGTGTTAAGAGTCCCACAT+CGG - chr1_2:56302488-56302507 Msa0078640:CDS 40.0%
CCCAACCACGATTTCTAATA+TGG - chr1_2:56302590-56302609 Msa0078640:CDS 40.0%
!! GATAACGGAAACCTGATAAC+AGG + chr1_2:56302647-56302666 None:intergenic 40.0%
GTTATCAGGTTTCCGTTATC+GGG - chr1_2:56302647-56302666 Msa0078640:CDS 40.0%
GAAGCGTGAACATAAATGAC+GGG + chr1_2:56302676-56302695 None:intergenic 40.0%
GTCCCCTGAAAAACATTTGT+TGG + chr1_2:56302909-56302928 None:intergenic 40.0%
GGAAGTTCAATAACCTTCGT+TGG - chr1_2:56303311-56303330 Msa0078640:intron 40.0%
TCTTCACATATGCAACCTCA+AGG - chr1_2:56303420-56303439 Msa0078640:intron 40.0%
!!! AGTGCTGTCATTTTTTTCCC+TGG + chr1_2:56303514-56303533 None:intergenic 40.0%
! TAGTTATTGGTTGGGAGAAC+CGG + chr1_2:56303660-56303679 None:intergenic 40.0%
!! TTGGGGACTAGTTATTGGTT+GGG + chr1_2:56303668-56303687 None:intergenic 40.0%
!! ATTGGGGACTAGTTATTGGT+TGG + chr1_2:56303669-56303688 None:intergenic 40.0%
ATCTGAAGGACAATGTCAGT+AGG + chr1_2:56303698-56303717 None:intergenic 40.0%
TAGAGGAATAGGGAATCTGA+AGG + chr1_2:56303712-56303731 None:intergenic 40.0%
TAGGAAGCAGTTACGTTTCT+TGG + chr1_2:56303757-56303776 None:intergenic 40.0%
!! ATATCCCCTTATCCGCTTTT+TGG - chr1_2:56304084-56304103 Msa0078640:intron 40.0%
ATGACCAAAAAGCGGATAAG+GGG + chr1_2:56304091-56304110 None:intergenic 40.0%
CATGACCAAAAAGCGGATAA+GGG + chr1_2:56304092-56304111 None:intergenic 40.0%
ACATGACCAAAAAGCGGATA+AGG + chr1_2:56304093-56304112 None:intergenic 40.0%
CTTGCAACATGACCAAAAAG+CGG + chr1_2:56304099-56304118 None:intergenic 40.0%
! GATTCTTTTGGACAAAGGTC+TGG - chr1_2:56304390-56304409 Msa0078640:intron 40.0%
!! GTTGATTTGTTTCTACCCAC+CGG - chr1_2:56304641-56304660 Msa0078640:intron 40.0%
ATTTACTCGCAAGATTTGCC+AGG - chr1_2:56304776-56304795 Msa0078640:intron 40.0%
TTTACTCGCAAGATTTGCCA+GGG - chr1_2:56304777-56304796 Msa0078640:intron 40.0%
AGGAAGTTAAAGCGCAGATA+TGG - chr1_2:56304872-56304891 Msa0078640:intron 40.0%
GGAAGTTAAAGCGCAGATAT+GGG - chr1_2:56304873-56304892 Msa0078640:intron 40.0%
TTCTGGTATATGACATCAGC+AGG - chr1_2:56304962-56304981 Msa0078640:five_prime_UTR 40.0%
! CGTCAAACGTTTGATAGCAT+TGG - chr1_2:56304985-56305004 Msa0078640:five_prime_UTR 40.0%
CCTCAAGGAAAAGAATGAAG+AGG + chr1_2:56305256-56305275 None:intergenic 40.0%
! CCTCTTCATTCTTTTCCTTG+AGG - chr1_2:56305253-56305272 Msa0078640:intron 40.0%
CATGTACTCGCATATATTGG+TGG - chr1_2:56305787-56305806 Msa0078640:intron 40.0%
! GGCACAAGGTTTGTTCTTTA+TGG - chr1_2:56305961-56305980 Msa0078640:intron 40.0%
CTACAACATATTAAGCCGGA+AGG - chr1_2:56306045-56306064 Msa0078640:intron 40.0%
CTTGAGACATCATAACCTTC+CGG + chr1_2:56306063-56306082 None:intergenic 40.0%
TCAAGAAAGATGATGCTTCC+TGG - chr1_2:56306086-56306105 Msa0078640:intron 40.0%
GATGCTTCCTGGATTGAAAA+TGG - chr1_2:56306097-56306116 Msa0078640:intron 40.0%
! AAGGGGTTGTTGTTCGAAAT+AGG - chr1_2:56306174-56306193 Msa0078640:intron 40.0%
! AATAACCTAGCGGCATTTTC+AGG + chr1_2:56306255-56306274 None:intergenic 40.0%
AAAATGCCGCTAGGTTATTC+AGG - chr1_2:56306256-56306275 Msa0078640:intron 40.0%
GGAAAGGGATTGATTGGGTT+TGG + chr1_2:56301043-56301062 None:intergenic 45.0%
GAAGGAGGAAAGGGATTGAT+TGG + chr1_2:56301049-56301068 None:intergenic 45.0%
TGCTGATATGCGATTGAAGG+AGG + chr1_2:56301064-56301083 None:intergenic 45.0%
CGACATCATCACATTCGTTC+TGG - chr1_2:56301396-56301415 Msa0078640:CDS 45.0%
AGCTTGACTTTGTAACCTCG+AGG - chr1_2:56301459-56301478 Msa0078640:CDS 45.0%
GCTTGACTTTGTAACCTCGA+GGG - chr1_2:56301460-56301479 Msa0078640:CDS 45.0%
GAGTGTGGTTAACCTGAGAT+AGG + chr1_2:56301737-56301756 None:intergenic 45.0%
AAACACACTCAGCATGAGTG+TGG + chr1_2:56301752-56301771 None:intergenic 45.0%
CTTCAGACATGAGATCCCTT+TGG + chr1_2:56302039-56302058 None:intergenic 45.0%
AGTTGGAGTTCAAAGGACTG+AGG - chr1_2:56302358-56302377 Msa0078640:CDS 45.0%
GTTGGAGTTCAAAGGACTGA+GGG - chr1_2:56302359-56302378 Msa0078640:CDS 45.0%
TTGGAGTTCAAAGGACTGAG+GGG - chr1_2:56302360-56302379 Msa0078640:CDS 45.0%
AAAGGACTGAGGGGAAAACA+AGG - chr1_2:56302369-56302388 Msa0078640:CDS 45.0%
! TTAAGAGTCCCACATCGGTT+AGG - chr1_2:56302493-56302512 Msa0078640:CDS 45.0%
CTAACACAACCCCACAAAAC+CGG + chr1_2:56302569-56302588 None:intergenic 45.0%
AGAGCCTCTTCACGATTCTT+TGG - chr1_2:56302617-56302636 Msa0078640:CDS 45.0%
GAGCCTCTTCACGATTCTTT+GGG - chr1_2:56302618-56302637 Msa0078640:CDS 45.0%
AACGGAAACCTGATAACAGG+TGG + chr1_2:56302644-56302663 None:intergenic 45.0%
ATGTGTAATCCTGAGCGTGA+GGG - chr1_2:56302698-56302717 Msa0078640:five_prime_UTR 45.0%
GTGTGTTAAGAGTCCCACAT+CGG - chr1_2:56302722-56302741 Msa0078640:five_prime_UTR 45.0%
! TTAAGAGTCCCACATCGGTT+AGG - chr1_2:56302493-56302512 Msa0078640:CDS 45.0%
CTAACACAACCCCACAAAAC+CGG + chr1_2:56302569-56302588 None:intergenic 45.0%
ATCTAACCATAACTGGGCTG+TGG - chr1_2:56303041-56303060 Msa0078640:intron 45.0%
TCTAACCATAACTGGGCTGT+GGG - chr1_2:56303042-56303061 Msa0078640:intron 45.0%
! TGTGGGAAGTGACTTTTTGC+AGG - chr1_2:56303059-56303078 Msa0078640:intron 45.0%
AACCTTCGTTGGAAGACTTC+TGG - chr1_2:56303322-56303341 Msa0078640:intron 45.0%
ATCCAGAAGTCTTCCAACGA+AGG + chr1_2:56303327-56303346 None:intergenic 45.0%
TCACATATGCAACCTCAAGG+TGG - chr1_2:56303423-56303442 Msa0078640:intron 45.0%
TATGCAACCTCAAGGTGGAA+AGG - chr1_2:56303428-56303447 Msa0078640:intron 45.0%
TCCATCCAAGAATGAGAGCT+TGG - chr1_2:56303630-56303649 Msa0078640:intron 45.0%
ACCAAGCTCTCATTCTTGGA+TGG + chr1_2:56303634-56303653 None:intergenic 45.0%
GAGAACCAAGCTCTCATTCT+TGG + chr1_2:56303638-56303657 None:intergenic 45.0%
! AGAATGAGAGCTTGGTTCTC+CGG - chr1_2:56303638-56303657 Msa0078640:intron 45.0%
!! ACATCATGTTCTGGAGGAGA+GGG + chr1_2:56303863-56303882 None:intergenic 45.0%
!! AACATCATGTTCTGGAGGAG+AGG + chr1_2:56303864-56303883 None:intergenic 45.0%
TTATACCCAGAAGGGAAGGA+GGG + chr1_2:56304316-56304335 None:intergenic 45.0%
ATTATACCCAGAAGGGAAGG+AGG + chr1_2:56304317-56304336 None:intergenic 45.0%
! CACCCAACTGTTGCTTCATA+AGG - chr1_2:56304445-56304464 Msa0078640:intron 45.0%
GAGAAAGCCAGAATCCATGA+TGG - chr1_2:56304609-56304628 Msa0078640:intron 45.0%
! GCATATTATAGGGGTGCAGT+TGG - chr1_2:56304934-56304953 Msa0078640:intron 45.0%
!! CGTTTGATAGCATTGGTCGA+TGG - chr1_2:56304992-56305011 Msa0078640:five_prime_UTR 45.0%
AGCAGAAGGGGAGACAAAAA+GGG - chr1_2:56306156-56306175 Msa0078640:intron 45.0%
!!! ATTAATATTAATTTGTATTT+TGG + chr1_2:56303565-56303584 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTAAGA+AGG - chr1_2:56305508-56305527 Msa0078640:intron 5.0%
!!! TTTTTTTTTTTTTTTAAGAA+GGG - chr1_2:56305509-56305528 Msa0078640:intron 5.0%
! CTTTTCTTTGCGTTGCGCCT+CGG + chr1_2:56300940-56300959 None:intergenic 50.0%
GAGTTGACACCACATGGACA+CGG + chr1_2:56301430-56301449 None:intergenic 50.0%
! TCCATGTGGTGTCAACTCAC+TGG - chr1_2:56301432-56301451 Msa0078640:CDS 50.0%
! ACCAGTGAGTTGACACCACA+TGG + chr1_2:56301436-56301455 None:intergenic 50.0%
TTTGGGCATGAAACCGGACA+AGG + chr1_2:56302021-56302040 None:intergenic 50.0%
TTGTCCGGTTTCATGCCCAA+AGG - chr1_2:56302020-56302039 Msa0078640:intron 50.0%
TGTCCGGTTTCATGCCCAAA+GGG - chr1_2:56302021-56302040 Msa0078640:intron 50.0%
GATCCCTTTGGGCATGAAAC+CGG + chr1_2:56302027-56302046 None:intergenic 50.0%
!! ACCTCACAAGCCGGTTTTGT+GGG - chr1_2:56302556-56302575 Msa0078640:CDS 50.0%
!! CGGTTTTGTGGGGTTGTGTT+AGG - chr1_2:56302567-56302586 Msa0078640:CDS 50.0%
TGGCCCAAAGAATCGTGAAG+AGG + chr1_2:56302624-56302643 None:intergenic 50.0%
TCTTTGGGCCACCTGTTATC+AGG - chr1_2:56302633-56302652 Msa0078640:CDS 50.0%
! GCGTGAACATAAATGACGGG+TGG + chr1_2:56302673-56302692 None:intergenic 50.0%
GATGTGTAATCCTGAGCGTG+AGG - chr1_2:56302697-56302716 Msa0078640:five_prime_UTR 50.0%
TGTGTAATCCTGAGCGTGAG+GGG - chr1_2:56302699-56302718 Msa0078640:five_prime_UTR 50.0%
!! ACCTCACAAGCCGGTTTTGT+GGG - chr1_2:56302556-56302575 Msa0078640:CDS 50.0%
!! CGGTTTTGTGGGGTTGTGTT+AGG - chr1_2:56302567-56302586 Msa0078640:CDS 50.0%
AGCTGCAAGCTTGATGCAGA+GGG + chr1_2:56303015-56303034 None:intergenic 50.0%
AAGCTGCAAGCTTGATGCAG+AGG + chr1_2:56303016-56303035 None:intergenic 50.0%
TTGTGTGCCTTTCCACCTTG+AGG + chr1_2:56303438-56303457 None:intergenic 50.0%
! TCAAGGTGGAAAGGCACACA+AGG - chr1_2:56303437-56303456 Msa0078640:intron 50.0%
! AAAGGCACACAAGGAACCCA+TGG - chr1_2:56303446-56303465 Msa0078640:intron 50.0%
AAGGCACACAAGGAACCCAT+GGG - chr1_2:56303447-56303466 Msa0078640:intron 50.0%
AGCCACCCTGTAATACGTTG+AGG - chr1_2:56303475-56303494 Msa0078640:intron 50.0%
CACCTCAACGTATTACAGGG+TGG + chr1_2:56303480-56303499 None:intergenic 50.0%
! TGAGGTGTTATCCGTATGCC+AGG - chr1_2:56303493-56303512 Msa0078640:intron 50.0%
! GAGGTGTTATCCGTATGCCA+GGG - chr1_2:56303494-56303513 Msa0078640:intron 50.0%
GAGGAGAGGGATATGGTGTT+AGG + chr1_2:56303850-56303869 None:intergenic 50.0%
!! TGTTCTGGAGGAGAGGGATA+TGG + chr1_2:56303857-56303876 None:intergenic 50.0%
TTATACCCCTCCTTCCCTTC+TGG - chr1_2:56304307-56304326 Msa0078640:intron 50.0%
TATACCCCTCCTTCCCTTCT+GGG - chr1_2:56304308-56304327 Msa0078640:intron 50.0%
TATACCCAGAAGGGAAGGAG+GGG + chr1_2:56304315-56304334 None:intergenic 50.0%
GACAAAGGTCTGGATGCTGA+TGG - chr1_2:56304400-56304419 Msa0078640:intron 50.0%
AAAGGTCTGGATGCTGATGG+TGG - chr1_2:56304403-56304422 Msa0078640:intron 50.0%
!! AGAGTTGCTGACTTTCCGGT+GGG + chr1_2:56304659-56304678 None:intergenic 50.0%
!! AAGAGTTGCTGACTTTCCGG+TGG + chr1_2:56304660-56304679 None:intergenic 50.0%
ACCGGAAAGTCAGCAACTCT+TGG - chr1_2:56304659-56304678 Msa0078640:intron 50.0%
!! CCCAAGAGTTGCTGACTTTC+CGG + chr1_2:56304663-56304682 None:intergenic 50.0%
CCGGAAAGTCAGCAACTCTT+GGG - chr1_2:56304660-56304679 Msa0078640:intron 50.0%
CAACTCTTGGGACTCACAGA+TGG - chr1_2:56304672-56304691 Msa0078640:intron 50.0%
AAGGGGATCGATCAGCAGAA+GGG - chr1_2:56306143-56306162 Msa0078640:intron 50.0%
CAGCAGAAGGGGAGACAAAA+AGG - chr1_2:56306155-56306174 Msa0078640:intron 50.0%
GCAGAAGGGGAGACAAAAAG+GGG - chr1_2:56306157-56306176 Msa0078640:intron 50.0%
!!! CCTAGCGGCATTTTCAGGTT+TGG + chr1_2:56306250-56306269 None:intergenic 50.0%
CCAAACCTGAAAATGCCGCT+AGG - chr1_2:56306247-56306266 Msa0078640:intron 50.0%
GACCAATGTCCGTGTCCATG+TGG - chr1_2:56301418-56301437 Msa0078640:CDS 55.0%
CACCACATGGACACGGACAT+TGG + chr1_2:56301423-56301442 None:intergenic 55.0%
CCAGAAACCTCTGCCTTGTC+CGG - chr1_2:56302005-56302024 Msa0078640:intron 55.0%
CATGAAACCGGACAAGGCAG+AGG + chr1_2:56302015-56302034 None:intergenic 55.0%
! GTCCCACATCGGTTAGGAGT+TGG - chr1_2:56302499-56302518 Msa0078640:CDS 55.0%
GGCCAACTCCTAACCGATGT+GGG + chr1_2:56302504-56302523 None:intergenic 55.0%
AGGCCAACTCCTAACCGATG+TGG + chr1_2:56302505-56302524 None:intergenic 55.0%
GCAATCCTCACCTCACAAGC+CGG - chr1_2:56302547-56302566 Msa0078640:CDS 55.0%
!! CAAAACCGGCTTGTGAGGTG+AGG + chr1_2:56302555-56302574 None:intergenic 55.0%
!! CACCTCACAAGCCGGTTTTG+TGG - chr1_2:56302555-56302574 Msa0078640:CDS 55.0%
!! CCTCACAAGCCGGTTTTGTG+GGG - chr1_2:56302557-56302576 Msa0078640:CDS 55.0%
!! AATGACGGGTGGCCCGATAA+CGG + chr1_2:56302662-56302681 None:intergenic 55.0%
GTGTAATCCTGAGCGTGAGG+GGG - chr1_2:56302700-56302719 Msa0078640:five_prime_UTR 55.0%
! GTCCCACATCGGTTAGGAGT+TGG - chr1_2:56302499-56302518 Msa0078640:CDS 55.0%
GGCCAACTCCTAACCGATGT+GGG + chr1_2:56302504-56302523 None:intergenic 55.0%
AGGCCAACTCCTAACCGATG+TGG + chr1_2:56302505-56302524 None:intergenic 55.0%
GCAATCCTCACCTCACAAGC+CGG - chr1_2:56302547-56302566 Msa0078640:CDS 55.0%
!! CAAAACCGGCTTGTGAGGTG+AGG + chr1_2:56302555-56302574 None:intergenic 55.0%
!! CACCTCACAAGCCGGTTTTG+TGG - chr1_2:56302555-56302574 Msa0078640:CDS 55.0%
!! CCTCACAAGCCGGTTTTGTG+GGG - chr1_2:56302557-56302576 Msa0078640:CDS 55.0%
GCAAGCTTGATGCAGAGGGA+GGG + chr1_2:56303011-56303030 None:intergenic 55.0%
TGCAAGCTTGATGCAGAGGG+AGG + chr1_2:56303012-56303031 None:intergenic 55.0%
CACTTCCCACAGCCCAGTTA+TGG + chr1_2:56303050-56303069 None:intergenic 55.0%
CGCAGATATGGGACACAGCT+GGG - chr1_2:56304884-56304903 Msa0078640:intron 55.0%
!! TGCGAGAGAGGTACCTACGA+CGG - chr1_2:56305919-56305938 Msa0078640:intron 55.0%
!! AGAGAGGTACCTACGACGGA+AGG - chr1_2:56305923-56305942 Msa0078640:intron 55.0%
! AAGGCGTTAGCTGAGGCACA+AGG - chr1_2:56305947-56305966 Msa0078640:intron 55.0%
GAAGGGGATCGATCAGCAGA+AGG - chr1_2:56306142-56306161 Msa0078640:intron 55.0%
AGGGGATCGATCAGCAGAAG+GGG - chr1_2:56306144-56306163 Msa0078640:intron 55.0%
CCGGACAAGGCAGAGGTTTC+TGG + chr1_2:56302008-56302027 None:intergenic 60.0%
!! CCCCACAAAACCGGCTTGTG+AGG + chr1_2:56302560-56302579 None:intergenic 60.0%
TAACACACCCCCTCACGCTC+AGG + chr1_2:56302710-56302729 None:intergenic 60.0%
!! CCCCACAAAACCGGCTTGTG+AGG + chr1_2:56302560-56302579 None:intergenic 60.0%
CAGGGTGGCTTAGCACCCAT+GGG + chr1_2:56303465-56303484 None:intergenic 60.0%
ACAGGGTGGCTTAGCACCCA+TGG + chr1_2:56303466-56303485 None:intergenic 60.0%
GCGCAGATATGGGACACAGC+TGG - chr1_2:56304883-56304902 Msa0078640:intron 60.0%
! GGGTGCAGTTGGAGCACTTC+TGG - chr1_2:56304945-56304964 Msa0078640:intron 60.0%
GGTACCTACGACGGAAGGCA+AGG - chr1_2:56305928-56305947 Msa0078640:intron 60.0%
AACGCCTTGCCTTCCGTCGT+AGG + chr1_2:56305935-56305954 None:intergenic 60.0%
! GGAAGGCAAGGCGTTAGCTG+AGG - chr1_2:56305940-56305959 Msa0078640:intron 60.0%
GGGACACAGCTGGGCAAGAG+AGG - chr1_2:56304893-56304912 Msa0078640:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 56300908 56306450 56300908 ID=Msa0078640;Name=Msa0078640
chr1_2 mRNA 56300908 56306450 56300908 ID=Msa0078640-mRNA-1;Parent=Msa0078640;Name=Msa0078640-mRNA-1;_AED=0.03;_eAED=0.03;_QI=465|1|1|1|0.25|0.2|5|255|224
chr1_2 exon 56300908 56301497 56300908 ID=Msa0078640-mRNA-1:exon:17635;Parent=Msa0078640-mRNA-1
chr1_2 exon 56302328 56302766 56302328 ID=Msa0078640-mRNA-1:exon:17634;Parent=Msa0078640-mRNA-1
chr1_2 exon 56302892 56302984 56302892 ID=Msa0078640-mRNA-1:exon:17633;Parent=Msa0078640-mRNA-1
chr1_2 exon 56304951 56305029 56304951 ID=Msa0078640-mRNA-1:exon:17632;Parent=Msa0078640-mRNA-1
chr1_2 exon 56306257 56306450 56306257 ID=Msa0078640-mRNA-1:exon:17631;Parent=Msa0078640-mRNA-1
chr1_2 five_prime_UTR 56306257 56306450 56306257 ID=Msa0078640-mRNA-1:five_prime_utr;Parent=Msa0078640-mRNA-1
chr1_2 five_prime_UTR 56304951 56305029 56304951 ID=Msa0078640-mRNA-1:five_prime_utr;Parent=Msa0078640-mRNA-1
chr1_2 five_prime_UTR 56302892 56302984 56302892 ID=Msa0078640-mRNA-1:five_prime_utr;Parent=Msa0078640-mRNA-1
chr1_2 five_prime_UTR 56302668 56302766 56302668 ID=Msa0078640-mRNA-1:five_prime_utr;Parent=Msa0078640-mRNA-1
chr1_2 CDS 56302328 56302667 56302328 ID=Msa0078640-mRNA-1:cds;Parent=Msa0078640-mRNA-1
chr1_2 CDS 56301163 56301497 56301163 ID=Msa0078640-mRNA-1:cds;Parent=Msa0078640-mRNA-1
chr1_2 three_prime_UTR 56300908 56301162 56300908 ID=Msa0078640-mRNA-1:three_prime_utr;Parent=Msa0078640-mRNA-1
Gene Sequence

>Msa0078640

ATGGCATTTAATAATGAAGAAGAGAAGACAGAGGATTACCTTTTCAAAATTGTCTTAATTGGTGATTCAGCTGTTGGGAAATCAAATTTACTCGCAAGATTTGCCAGGGATGAATTTTATCCTAATTCAAAGTCAACTATAGGAGTAGAGTTCCAAACTCAAAAAATGGAAATTAACGGAAAGGAAGTTAAAGCGCAGATATGGGACACAGCTGGGCAAGAGAGGTTCAGAGCTGTTACTTCTGCATATTATAGGGGTGCAGTTGGAGCACTTCTGGTATATGACATCAGCAGGCGTCAAACGTTTGATAGCATTGGTCGATGGCTTAACGAACTTCACACTCACTCTGATATGAACGTTGTCACAATACTTGTTGGGAACAAGTCAGATCTTAAGGATGCGAGAGAGGTACCTACGACGGAAGGCAAGGCGTTAGCTGAGGCACAAGGTTTGTTCTTTATGGAGACATCAGCACTTGATTCATCAAATGTAGTTGCTGCTTTTCAAACAGTTGTAAAAGAAATCTACAACATATTAAGCCGGAAGGTTATGATGTCTCAAGAGCTCAAGAAAGATGATGCTTCCTGGATTGAAAATGGAAAGACTGTTGTTCTACAACAAGAAGGGGATCGATCAGCAGAAGGGGAGACAAAAAGGGGTTGTTGTTCGAAATAG
Protein sequence

>Msa0078640

MAFNNEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVPTTEGKALAEAQGLFFMETSALDSSNVVAAFQTVVKEIYNILSRKVMMSQELKKDDASWIENGKTVVLQQEGDRSAEGETKRGCCSK*