AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0648270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648270 MtrunA17_Chr4g0040251 98.089 471 9 0 1 471 1 471 0.0 952
Msa0648270 MtrunA17_Chr4g0040261 85.408 466 67 1 1 466 34 498 0.0 816
Msa0648270 MtrunA17_Chr4g0040271 84.856 416 62 1 1 416 1 415 0.0 744
Msa0648270 MtrunA17_Chr4g0040221 64.882 467 157 4 1 464 1 463 0.0 595
Msa0648270 MtrunA17_Chr7g0217051 59.267 464 187 2 5 467 7 469 0.0 583
Msa0648270 MtrunA17_Chr4g0040001 61.373 466 173 4 1 460 1 465 0.0 569
Msa0648270 MtrunA17_Chr4g0040231 59.957 467 178 4 4 464 5 468 0.0 559
Msa0648270 MtrunA17_Chr4g0040011 61.717 431 158 4 1 425 9 438 0.0 526
Msa0648270 MtrunA17_Chr7g0248011 50.985 457 220 4 2 456 3 457 8.63e-161 463
Msa0648270 MtrunA17_Chr6g0457271 54.848 361 152 4 66 419 5 361 4.14e-140 407
Msa0648270 MtrunA17_Chr6g0457281 51.546 291 135 3 86 371 1 290 5.24e-102 306
Msa0648270 MtrunA17_Chr1g0147071 26.809 470 302 13 5 448 6 459 2.02e-45 165
Msa0648270 MtrunA17_Chr5g0393471 27.181 298 201 8 161 454 42 327 1.53e-24 104
Msa0648270 MtrunA17_Chr6g0457291 55.224 67 30 0 394 460 1 67 5.49e-18 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648270 AT3G49190.1 27.848 474 291 14 9 448 18 474 4.30e-50 179
Msa0648270 AT5G53390.1 26.526 475 318 11 9 463 15 478 7.13e-50 177
Msa0648270 AT5G12420.1 28.205 468 294 12 9 448 7 460 1.59e-49 176
Msa0648270 AT5G16350.3 28.322 459 301 13 1 448 1 442 4.46e-48 172
Msa0648270 AT3G49200.1 28.480 467 301 13 9 448 26 486 7.18e-47 169
Msa0648270 AT5G12420.2 28.538 424 262 11 9 404 7 417 1.14e-46 168
Msa0648270 AT3G49210.1 27.447 470 300 10 9 442 26 490 4.14e-46 168
Msa0648270 AT5G16350.1 27.673 477 301 14 1 448 1 462 1.05e-45 166
Msa0648270 AT5G22490.1 28.358 469 284 18 10 448 12 458 2.39e-44 162
Msa0648270 AT1G72110.1 25.726 482 330 12 6 470 9 479 8.32e-44 160
Msa0648270 AT5G53380.1 26.154 455 301 9 9 440 9 451 9.65e-43 158
Msa0648270 AT2G38995.2 26.004 473 318 15 9 463 21 479 1.87e-39 149
Msa0648270 AT1G72110.2 25.105 478 329 12 6 470 9 470 5.82e-39 147
Msa0648270 AT5G37300.1 27.235 481 315 13 9 470 17 481 3.05e-38 145
Msa0648270 AT5G37300.4 27.235 481 315 13 9 470 35 499 3.86e-38 145
Msa0648270 AT5G16350.2 28.212 397 242 13 1 368 1 383 6.46e-37 140
Msa0648270 AT3G49210.2 27.604 384 237 10 9 356 26 404 2.72e-35 136
Msa0648270 AT5G22490.2 28.792 389 227 17 10 368 12 380 1.99e-33 130
Msa0648270 AT2G38995.3 25.899 417 278 14 65 463 7 410 3.48e-32 127
Msa0648270 AT2G38995.4 25.549 364 252 8 65 416 7 363 5.16e-29 118
Msa0648270 AT5G37300.2 27.273 374 246 9 9 368 35 396 6.28e-28 115
Msa0648270 AT5G37300.3 28.679 265 180 6 9 270 35 293 2.30e-20 92.4
Msa0648270 AT2G38995.1 22.422 223 157 6 252 463 72 289 8.04e-11 63.5

Find 191 sgRNAs with CRISPR-Local

Find 418 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATTCAATCTCTGATTT+TGG 0.127994 4_3:+54718813 Msa0648270:CDS
TATTATCAACCAAATCATTT+TGG 0.185564 4_3:-54717094 None:intergenic
GTTTAGTTTCATCAATAAAA+AGG 0.188662 4_3:+54723795 Msa0648270:three_prime_UTR
TGCTTTCCAAACAAAATCTA+AGG 0.198564 4_3:-54719623 None:intergenic
ATTATTAACATGTGCCTTTA+GGG 0.219793 4_3:-54717498 None:intergenic
TCCCAAAGGGGTTTGTCTTT+TGG 0.228493 4_3:-54718564 None:intergenic
TATTGTCCACTTGGACTTAC+TGG 0.233113 4_3:-54718158 None:intergenic
TGTAAGAAATTGTGCAAATT+TGG 0.233415 4_3:-54717574 None:intergenic
CTTATTTGATAAAAGTTAAT+AGG 0.234055 4_3:-54716968 None:intergenic
ACTTCATATCCAAGATTAAA+TGG 0.237464 4_3:-54716340 None:intergenic
GGATGAATGGTTCGGGAATT+AGG 0.242068 4_3:+54716545 Msa0648270:five_prime_UTR
TAATGCTAATTTGTGTCTTT+AGG 0.245104 4_3:-54717630 None:intergenic
TTGTAGTTTCCGACCTATTT+GGG 0.246930 4_3:-54716878 None:intergenic
AATTATTAACATGTGCCTTT+AGG 0.250498 4_3:-54717499 None:intergenic
TGAATTGAAAAGGGAGAATA+TGG 0.251715 4_3:-54718799 None:intergenic
TAATTCGAGCACCGCTTAAA+TGG 0.255953 4_3:-54717225 None:intergenic
AATGCTAATTTGTGTCTTTA+GGG 0.265152 4_3:-54717629 None:intergenic
GGCTGGCTTGGCTTAACTTT+GGG 0.275418 4_3:-54719591 None:intergenic
TATGCAAGAGATTGATAATA+AGG 0.279179 4_3:+54719432 Msa0648270:CDS
GGAACCTTAAAATGATCTTT+TGG 0.288626 4_3:-54718459 None:intergenic
TTTGTAGTTTCCGACCTATT+TGG 0.289084 4_3:-54716879 None:intergenic
ACTAAAATAGCTTATAAATA+AGG 0.310691 4_3:-54723973 None:intergenic
TCTAACTACCGATATGTTCT+TGG 0.311238 4_3:-54716369 None:intergenic
TAGTACAAGTGAGGGGCTTT+TGG 0.317022 4_3:+54716809 Msa0648270:five_prime_UTR
TAATAGGAAAGCTGCTCAAT+AGG 0.317521 4_3:-54716952 None:intergenic
TTCTCAATTCCATTTAATCT+TGG 0.322924 4_3:+54716331 Msa0648270:five_prime_UTR
AACCTAACAAGACATTATTC+AGG 0.326287 4_3:-54716594 None:intergenic
TTAAGACTCGGGCCTGGTTC+GGG 0.333109 4_3:-54716569 None:intergenic
AAGATGAAATGAACAATCTA+TGG 0.335275 4_3:+54723707 Msa0648270:exon
GGCTGATTCAAAATCTCCTT+GGG 0.340651 4_3:+54719537 Msa0648270:CDS
AAGATGATAAATCACCTATA+TGG 0.340719 4_3:+54718865 Msa0648270:CDS
ACAATAAATGATGTGATTAC+TGG 0.341873 4_3:+54719382 Msa0648270:CDS
TGTTTCATTAGAAATTGATT+TGG 0.343128 4_3:-54716996 None:intergenic
TTACTTACCTTCAAATATTA+CGG 0.345358 4_3:+54717034 Msa0648270:five_prime_UTR
CATTCGTACTTAAATTTGTA+TGG 0.350413 4_3:-54717812 None:intergenic
TTCCTGAATAATGTCTTGTT+AGG 0.357735 4_3:+54716592 Msa0648270:five_prime_UTR
TTCCACTGGCCCGATCAAAT+TGG 0.359504 4_3:-54720622 None:intergenic
TTGGTAACTTCCAATGTTCC+TGG 0.365297 4_3:-54719494 None:intergenic
ATGATGAAGTTTGAATATTA+TGG 0.371436 4_3:-54718628 None:intergenic
AATTGTGATGATTTGCGGTT+AGG 0.374258 4_3:-54718735 None:intergenic
AGACTGTGTAAAACAAATAA+TGG 0.374400 4_3:+54717974 Msa0648270:five_prime_UTR
ATTAAGACTCGGGCCTGGTT+CGG 0.375507 4_3:-54716570 None:intergenic
GATATGCAGCTGAAATTAAG+AGG 0.384094 4_3:+54719706 Msa0648270:CDS
AATAGGAAAGCTGCTCAATA+GGG 0.386509 4_3:-54716951 None:intergenic
AATGGAATTGAGAACATATA+AGG 0.387484 4_3:-54716322 None:intergenic
GCATGCCAGCACAATTTGAT+TGG 0.387959 4_3:-54718046 None:intergenic
AATCAGAGATTGAATTGAAA+AGG 0.391399 4_3:-54718809 None:intergenic
AATCTCCATTGATGCTGCTT+TGG 0.391558 4_3:-54723672 None:intergenic
TGATTCAGACAAATCATATA+CGG 0.401790 4_3:+54717134 Msa0648270:five_prime_UTR
ACCAAAAGACAAACCCCTTT+GGG 0.401857 4_3:+54718563 Msa0648270:CDS
AGGCTGGCTTGGCTTAACTT+TGG 0.403108 4_3:-54719592 None:intergenic
GTATATGATTTGTCTGAATC+AGG 0.405870 4_3:-54717132 None:intergenic
GCAGTTGCTAAACATCTATA+TGG 0.407126 4_3:+54720570 Msa0648270:CDS
AATCAGCCTTGGTCATGTCT+TGG 0.407622 4_3:-54719522 None:intergenic
TTTCATCGAGAGAGAATGAT+AGG 0.409102 4_3:-54718932 None:intergenic
CACCAAAAGACAAACCCCTT+TGG 0.410996 4_3:+54718562 Msa0648270:CDS
AGCAACCTAAATAAAATAAC+AGG 0.411301 4_3:+54717185 Msa0648270:five_prime_UTR
CAAAATCTAAGGGGTTAGAT+AGG 0.412591 4_3:-54719612 None:intergenic
TTACAGGGGATGAATGGTTC+GGG 0.415039 4_3:+54716538 Msa0648270:five_prime_UTR
GGTGAGCACGTGAGCAAACT+TGG 0.417995 4_3:+54716748 Msa0648270:five_prime_UTR
ATGCATTGCTTCTTATAAAC+CGG 0.418010 4_3:-54716642 None:intergenic
CAAACTTGGATGAATGGAAT+AGG 0.418403 4_3:+54716762 Msa0648270:five_prime_UTR
GCCAGTGGAACCTATGGCTT+TGG 0.419946 4_3:+54720635 Msa0648270:CDS
AGGTAAATCAACATTGTAAC+CGG 0.420538 4_3:+54716623 Msa0648270:five_prime_UTR
GAGGAGAAGCGTGGATTGAT+AGG 0.424660 4_3:-54718284 None:intergenic
TTTACAGGGGATGAATGGTT+CGG 0.425128 4_3:+54716537 Msa0648270:five_prime_UTR
CATAAACGTGGCTCTTGAAC+GGG 0.426416 4_3:-54717875 None:intergenic
GCTTGGCTTAACTTTGGGAT+TGG 0.427085 4_3:-54719586 None:intergenic
ATAAATTCATGCCGATCGAC+TGG 0.427881 4_3:-54717253 None:intergenic
TGGTCATGTCTTGGATTGAT+TGG 0.428689 4_3:-54719513 None:intergenic
CTAACTACCGATATGTTCTT+GGG 0.431390 4_3:-54716368 None:intergenic
ATAAAGATGGAAATATGAAA+TGG 0.432943 4_3:+54718418 Msa0648270:CDS
ATCTAAGGGGTTAGATAGGC+TGG 0.434061 4_3:-54719608 None:intergenic
AGGCTGATTCAAAATCTCCT+TGG 0.434769 4_3:+54719536 Msa0648270:CDS
GCAAGAATGTCAAATTCAAC+AGG 0.440973 4_3:+54719454 Msa0648270:CDS
ATTATTCTTGAAAATACAAA+TGG 0.443660 4_3:-54716455 None:intergenic
TGAAAACTTAGTCCCCAAAT+AGG 0.444589 4_3:+54716865 Msa0648270:five_prime_UTR
CATATCCAAAGCAGCATCAA+TGG 0.444606 4_3:+54723667 Msa0648270:CDS
TGGTGATGGTTACTCTCTCA+TGG 0.446072 4_3:+54718656 Msa0648270:CDS
CAATAAATGATGTGATTACT+GGG 0.449069 4_3:+54719383 Msa0648270:CDS
CCTTCCTCACCATTCCATAT+AGG 0.456878 4_3:-54718879 None:intergenic
TTAACAATTGTGATGATTTG+CGG 0.460575 4_3:-54718740 None:intergenic
ATAGCTTGAGAGTCATCAAT+TGG 0.464600 4_3:-54718236 None:intergenic
AACAATCTATGGAGAAAGAG+AGG 0.466969 4_3:+54723718 Msa0648270:exon
GTCTCTTTACCTCGAGAACT+AGG 0.469664 4_3:+54717056 Msa0648270:five_prime_UTR
CAGACTAACTTGTGCCCTAA+AGG 0.473505 4_3:+54717484 Msa0648270:five_prime_UTR
AGGGGTTAGATAGGCTGGCT+TGG 0.474507 4_3:-54719603 None:intergenic
ATAAAATACAAGCCTTTCAC+AGG 0.476240 4_3:-54720666 None:intergenic
GCACCGCTTAAATGGTTTCA+AGG 0.481651 4_3:-54717217 None:intergenic
ATCAGAGATTGAATTGAAAA+GGG 0.482081 4_3:-54718808 None:intergenic
TGTCAAAGATATTAATAGAA+AGG 0.483733 4_3:+54718538 Msa0648270:CDS
GAGCCACGTTTATGATCAAA+AGG 0.484061 4_3:+54717884 Msa0648270:five_prime_UTR
ATAACAATCAAGTCTAAGCT+TGG 0.484750 4_3:+54718957 Msa0648270:CDS
TTGTCATGTCCAATTTGATC+GGG 0.484819 4_3:+54720613 Msa0648270:CDS
TTTGATTGGATCCTCACATC+TGG 0.485042 4_3:-54718032 None:intergenic
GATCGGGCCAGTGGAACCTA+TGG 0.490902 4_3:+54720629 Msa0648270:CDS
TGCTTTGGATATGATTTCAA+AGG 0.491056 4_3:-54723657 None:intergenic
AATGTCAAATTCAACAGGAT+TGG 0.492379 4_3:+54719459 Msa0648270:CDS
GTTGATAATACAAGACAAGA+AGG 0.495127 4_3:+54717107 Msa0648270:five_prime_UTR
AAAGAGACCGTAATATTTGA+AGG 0.496234 4_3:-54717041 None:intergenic
CGTGAGCAAACTTGGATGAA+TGG 0.497993 4_3:+54716756 Msa0648270:five_prime_UTR
GCCAAAGCCATAGGTTCCAC+TGG 0.507030 4_3:-54720636 None:intergenic
AAAAGGGAGAATATGGTTGA+AGG 0.512885 4_3:-54718792 None:intergenic
GATAACATGGATTTCCCAAA+GGG 0.515587 4_3:-54718577 None:intergenic
GGATGGTTTGCCAAAGCCAT+AGG 0.516215 4_3:-54720645 None:intergenic
GCTTTCCAAACAAAATCTAA+GGG 0.520219 4_3:-54719622 None:intergenic
GATGAATGGAATAGGAATGT+TGG 0.520323 4_3:+54716770 Msa0648270:five_prime_UTR
AGTGCATAGATCATAATCAA+TGG 0.522959 4_3:+54718112 Msa0648270:exon
TGGTTGTTGAATCATGTGTT+TGG 0.525327 4_3:-54716435 None:intergenic
GGAAAAGACAAAGGAAGAGA+AGG 0.525790 4_3:-54718714 None:intergenic
TTGGCAAACCATCCTGTGAA+AGG 0.530246 4_3:+54720654 Msa0648270:CDS
GAATTAATGTCCCAGTCGAT+CGG 0.530469 4_3:+54717242 Msa0648270:five_prime_UTR
TCGAGGAGCACGTGAGCATG+TGG 0.531179 4_3:+54716925 Msa0648270:five_prime_UTR
GTGTAAGCAGCATTGCTTGT+TGG 0.533388 4_3:-54718606 None:intergenic
AATACAAGCCTTTCACAGGA+TGG 0.535235 4_3:-54720662 None:intergenic
GTCGGAAACTACAAACTATG+AGG 0.535543 4_3:+54716887 Msa0648270:five_prime_UTR
CTTCATCATGCACTTGGTGA+TGG 0.536861 4_3:+54718642 Msa0648270:CDS
TTCAAACTTCATCATGCACT+TGG 0.538549 4_3:+54718636 Msa0648270:CDS
GTTACAACCCAAGAACATAT+CGG 0.539028 4_3:+54716361 Msa0648270:five_prime_UTR
TCTCTTTACCTCGAGAACTA+GGG 0.542981 4_3:+54717057 Msa0648270:five_prime_UTR
CATCAAAGCAGAATAACTAA+AGG 0.543426 4_3:-54716693 None:intergenic
GTTGTCATGTCCAATTTGAT+CGG 0.545850 4_3:+54720612 Msa0648270:CDS
TCGGAAACTACAAACTATGA+GGG 0.546239 4_3:+54716888 Msa0648270:five_prime_UTR
CAAATATTATAAGCCAACAT+TGG 0.549483 4_3:-54724009 None:intergenic
GAAATATAATGAAATTGTGC+TGG 0.552134 4_3:+54717996 Msa0648270:five_prime_UTR
GGTGATGGTTACTCTCTCAT+GGG 0.557425 4_3:+54718657 Msa0648270:CDS
GAGAAATGTAGTACAAGTGA+GGG 0.559608 4_3:+54716801 Msa0648270:five_prime_UTR
TCATAAACGTGGCTCTTGAA+CGG 0.561870 4_3:-54717876 None:intergenic
AACTTAGTCCCCAAATAGGT+CGG 0.562150 4_3:+54716869 Msa0648270:five_prime_UTR
CAGGAATTAAGACTCGGGCC+TGG 0.566647 4_3:-54716575 None:intergenic
CCTATATGGAATGGTGAGGA+AGG 0.567496 4_3:+54718879 Msa0648270:CDS
AGTTCACATTCTAAACCACT+TGG 0.567838 4_3:+54723938 Msa0648270:three_prime_UTR
GATAAATCACCTATATGGAA+TGG 0.568282 4_3:+54718870 Msa0648270:CDS
AGAGGCATTAAAACTGTACA+TGG 0.568718 4_3:+54717682 Msa0648270:five_prime_UTR
AGTATTCAATGCCATTGTCT+AGG 0.569604 4_3:+54723750 Msa0648270:three_prime_UTR
TATCCTTGAAACCATTTAAG+CGG 0.571238 4_3:+54717214 Msa0648270:five_prime_UTR
CTCTTTACCTCGAGAACTAG+GGG 0.573292 4_3:+54717058 Msa0648270:five_prime_UTR
TAAATTCATGCCGATCGACT+GGG 0.573468 4_3:-54717252 None:intergenic
GTGTTGAAGTATTGTCCACT+TGG 0.573593 4_3:-54718167 None:intergenic
GTCCAATTTGATCGGGCCAG+TGG 0.573799 4_3:+54720620 Msa0648270:CDS
TTGCTAAGTACCAGGAACAT+TGG 0.575327 4_3:+54719484 Msa0648270:CDS
AAAGGGAGAATATGGTTGAA+GGG 0.579274 4_3:-54718791 None:intergenic
AAACATATGAACATAGGGGA+GGG 0.581662 4_3:-54718190 None:intergenic
AACATATGAACATAGGGGAG+GGG 0.584123 4_3:-54718189 None:intergenic
CGGGAATTAGGACCCGAACC+AGG 0.585816 4_3:+54716557 Msa0648270:five_prime_UTR
AGTCTAATACAAGAGTGTAT+CGG 0.587437 4_3:-54716394 None:intergenic
ATAGGAAAGCTGCTCAATAG+GGG 0.590262 4_3:-54716950 None:intergenic
TTGATAATACAAGACAAGAA+GGG 0.591111 4_3:+54717108 Msa0648270:five_prime_UTR
TACAAATTTAAGTACGAATG+TGG 0.592931 4_3:+54717815 Msa0648270:five_prime_UTR
TAAATTGTGATAAATGTCGC+CGG 0.593757 4_3:-54717757 None:intergenic
TATAATGTCTGGTGCACCTG+AGG 0.596961 4_3:+54720686 Msa0648270:CDS
AGGATCCAATCAAATTGTGC+TGG 0.597120 4_3:+54718041 Msa0648270:five_prime_UTR
TGATAGGTAAGAACACATGT+TGG 0.604630 4_3:-54718268 None:intergenic
TGATAACATGGATTTCCCAA+AGG 0.605124 4_3:-54718578 None:intergenic
TTGTTGGATACTTGATAACA+TGG 0.610552 4_3:-54718590 None:intergenic
GATTGGTGTTGCTAAGTACC+AGG 0.611444 4_3:+54719476 Msa0648270:CDS
TGATAATACAAGACAAGAAG+GGG 0.613226 4_3:+54717109 Msa0648270:five_prime_UTR
ATTATTCAGGAATTAAGACT+CGG 0.616267 4_3:-54716581 None:intergenic
TTATTCAGGAATTAAGACTC+GGG 0.617642 4_3:-54716580 None:intergenic
TGAGAAATGTAGTACAAGTG+AGG 0.617652 4_3:+54716800 Msa0648270:five_prime_UTR
TGTAGTTTCCGACCTATTTG+GGG 0.618935 4_3:-54716877 None:intergenic
ATAATGAAACTCCTAGACAA+TGG 0.625979 4_3:-54723761 None:intergenic
AAAAGTACGTACTATTATGG+AGG 0.629039 4_3:-54718303 None:intergenic
ATATAGGTGAGAGATAAAGA+TGG 0.633511 4_3:+54718405 Msa0648270:intron
ACTATTATGGAGGAGAAGCG+TGG 0.633661 4_3:-54718293 None:intergenic
ACAATCTATGGAGAAAGAGA+GGG 0.634533 4_3:+54723719 Msa0648270:three_prime_UTR
CTTTCCAAACAAAATCTAAG+GGG 0.635519 4_3:-54719621 None:intergenic
ACAGAAGTTCAAGTTGTGCA+TGG 0.637970 4_3:+54723628 Msa0648270:CDS
GCTGAAATTAAGAGGACATG+AGG 0.640508 4_3:+54719714 Msa0648270:CDS
ACTGAGCCAGTAAGTCCAAG+TGG 0.642613 4_3:+54718152 Msa0648270:CDS
GATAGGTTTGATAGTGCACA+AGG 0.644206 4_3:-54718915 None:intergenic
ATCACCTATATGGAATGGTG+AGG 0.649181 4_3:+54718875 Msa0648270:CDS
CGAGGAGCACGTGAGCATGT+GGG 0.649690 4_3:+54716926 Msa0648270:five_prime_UTR
AATCAAGTCTAAGCTTGGAG+TGG 0.650359 4_3:+54718962 Msa0648270:CDS
TGAATGTCACACCAGATGTG+AGG 0.650593 4_3:+54718021 Msa0648270:five_prime_UTR
GAATGGAATAGGAATGTTGG+TGG 0.651040 4_3:+54716773 Msa0648270:five_prime_UTR
CTGATTCAAAATCTCCTTGG+GGG 0.654193 4_3:+54719539 Msa0648270:CDS
TAGGAAAGCTGCTCAATAGG+GGG 0.656377 4_3:-54716949 None:intergenic
GCTGATTCAAAATCTCCTTG+GGG 0.657580 4_3:+54719538 Msa0648270:CDS
AAAACATATGAACATAGGGG+AGG 0.661494 4_3:-54718191 None:intergenic
AGGTGTTGTGAAATTCCAAG+TGG 0.663720 4_3:-54723953 None:intergenic
CAATCTATGGAGAAAGAGAG+GGG 0.669874 4_3:+54723720 Msa0648270:three_prime_UTR
TTGCGGTTAGGAAAAGACAA+AGG 0.670319 4_3:-54718723 None:intergenic
CGGAAACTACAAACTATGAG+GGG 0.671315 4_3:+54716889 Msa0648270:five_prime_UTR
CAATTGTTAACTCCTAAGAG+AGG 0.672084 4_3:+54718753 Msa0648270:CDS
GTATGGTCACACGACTGACA+TGG 0.695441 4_3:-54717795 None:intergenic
ATCAATCCAAGACATGACCA+AGG 0.700982 4_3:+54719516 Msa0648270:CDS
ATAACATGGATTTCCCAAAG+GGG 0.708600 4_3:-54718576 None:intergenic
AGAAATGTAGTACAAGTGAG+GGG 0.709035 4_3:+54716802 Msa0648270:five_prime_UTR
AATAAATGATGTGATTACTG+GGG 0.709233 4_3:+54719384 Msa0648270:CDS
TCTTTACCTCGAGAACTAGG+GGG 0.737732 4_3:+54717059 Msa0648270:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATTAAAATTCAAGT+AGG + chr4_3:54717381-54717400 Msa0648270:five_prime_UTR 10.0%
!! TAAAAATTAAAATTCAAGTA+GGG + chr4_3:54717382-54717401 Msa0648270:five_prime_UTR 10.0%
!! ATTCAAGTAAAAATAAATAA+AGG - chr4_3:54717656-54717675 None:intergenic 10.0%
!! TGTTATATAAAAAATTTGTA+AGG - chr4_3:54718352-54718371 None:intergenic 10.0%
!! TTTATATACAATTTGTATAT+TGG + chr4_3:54718994-54719013 Msa0648270:intron 10.0%
!! TAATTAAAAAACTATAACTA+AGG - chr4_3:54719140-54719159 None:intergenic 10.0%
!! AATGAATATATGAAAATTAA+AGG + chr4_3:54721018-54721037 Msa0648270:intron 10.0%
!! ATTAAATATATTAATGATCA+AGG - chr4_3:54721207-54721226 None:intergenic 10.0%
!! TTTCTTGTTAAAAAATAAAA+AGG - chr4_3:54723435-54723454 None:intergenic 10.0%
!! ATAATTCATTATTTATTGTT+TGG + chr4_3:54723845-54723864 Msa0648270:intron 10.0%
!! ATTATTCTTGAAAATACAAA+TGG - chr4_3:54716458-54716477 None:intergenic 15.0%
!! ACTATTTGTAAAAAAAACAT+AGG + chr4_3:54716727-54716746 Msa0648270:five_prime_UTR 15.0%
!! CTTATTTGATAAAAGTTAAT+AGG - chr4_3:54716971-54716990 None:intergenic 15.0%
!! AAAAAAAATCCAAAATGATT+TGG + chr4_3:54717085-54717104 Msa0648270:five_prime_UTR 15.0%
!!! AATTTCCTGTTATTTTATTT+AGG - chr4_3:54717193-54717212 None:intergenic 15.0%
!! TATACTTATTCATCTTAATT+AGG - chr4_3:54720766-54720785 None:intergenic 15.0%
!! TTCTAACTAAAAATATAGAA+TGG - chr4_3:54721121-54721140 None:intergenic 15.0%
!!! TTTTGAGTTATTTTACAAAA+GGG - chr4_3:54722000-54722019 None:intergenic 15.0%
!!! ATTTTGAGTTATTTTACAAA+AGG - chr4_3:54722001-54722020 None:intergenic 15.0%
!! AAATAACTTAGTTCAATAAA+AGG + chr4_3:54722685-54722704 Msa0648270:intron 15.0%
!! AATAACTTAGTTCAATAAAA+GGG + chr4_3:54722686-54722705 Msa0648270:intron 15.0%
!! GTACAAAATATTTAAACTAA+TGG - chr4_3:54723067-54723086 None:intergenic 15.0%
!!! TTTAGTTTCATCAATAAAAA+GGG + chr4_3:54723796-54723815 Msa0648270:three_prime_UTR 15.0%
!!! TGTATATTAATTAAGTTTTG+TGG + chr4_3:54723903-54723922 Msa0648270:intron 15.0%
!! ACTAAAATAGCTTATAAATA+AGG - chr4_3:54723976-54723995 None:intergenic 15.0%
!! TGTTTCATTAGAAATTGATT+TGG - chr4_3:54716999-54717018 None:intergenic 20.0%
!! TTACTTACCTTCAAATATTA+CGG + chr4_3:54717034-54717053 Msa0648270:five_prime_UTR 20.0%
!!! TATTATCAACCAAATCATTT+TGG - chr4_3:54717097-54717116 None:intergenic 20.0%
!!! AACTTTTGTTTTTCTATCTT+TGG - chr4_3:54717436-54717455 None:intergenic 20.0%
!! AAAAACAAAAGTTTAACAAG+AGG + chr4_3:54717443-54717462 Msa0648270:five_prime_UTR 20.0%
!!! TTTTACTTGAATGTAAAAAG+AGG + chr4_3:54717664-54717683 Msa0648270:five_prime_UTR 20.0%
!!! TTATTTTATGACAAAAGAAG+AGG + chr4_3:54717947-54717966 Msa0648270:five_prime_UTR 20.0%
!!! TTCATATGTTTTTGGATTTT+TGG + chr4_3:54718202-54718221 Msa0648270:CDS 20.0%
!!! ATAAAAAGTACGTACTATTA+TGG - chr4_3:54718309-54718328 None:intergenic 20.0%
!! ATAAAGATGGAAATATGAAA+TGG + chr4_3:54718418-54718437 Msa0648270:CDS 20.0%
!!! AAATCCAAAAGATCATTTTA+AGG + chr4_3:54718455-54718474 Msa0648270:CDS 20.0%
!! TGTCAAAGATATTAATAGAA+AGG + chr4_3:54718538-54718557 Msa0648270:CDS 20.0%
!! ATGATGAAGTTTGAATATTA+TGG - chr4_3:54718631-54718650 None:intergenic 20.0%
!!! ATATGTTCATACAATTTGTT+AGG + chr4_3:54719111-54719130 Msa0648270:intron 20.0%
!! ATATTTAAATGTGGAGAAAT+AGG + chr4_3:54719214-54719233 Msa0648270:intron 20.0%
!! TATTTAAATGTGGAGAAATA+GGG + chr4_3:54719215-54719234 Msa0648270:intron 20.0%
!!! AGTTCTAACATAATGTTTTT+TGG + chr4_3:54719351-54719370 Msa0648270:intron 20.0%
!! AAATGTATTTGCATAAAGAA+TGG + chr4_3:54720071-54720090 Msa0648270:intron 20.0%
!!! AATATTTTATCGAGTAATGT+CGG + chr4_3:54720329-54720348 Msa0648270:intron 20.0%
!! TAACGATATAGAATAGAAAT+GGG - chr4_3:54720922-54720941 None:intergenic 20.0%
!! GAATATATGAAAATTAAAGG+TGG + chr4_3:54721021-54721040 Msa0648270:intron 20.0%
!! ACGACATGTATTAAAAAAAA+TGG - chr4_3:54721087-54721106 None:intergenic 20.0%
!! ACTAAAAATATAGAATGGAA+TGG - chr4_3:54721116-54721135 None:intergenic 20.0%
!!! TAAGACAAATTTTAGTATGT+GGG - chr4_3:54721290-54721309 None:intergenic 20.0%
!!! TTAAGACAAATTTTAGTATG+TGG - chr4_3:54721291-54721310 None:intergenic 20.0%
!! TTGCAACATGTATTAAAAAA+CGG + chr4_3:54721365-54721384 Msa0648270:intron 20.0%
!! TAAATAATGTTAAACATCCA+TGG + chr4_3:54721460-54721479 Msa0648270:intron 20.0%
!! AAGTAGTAATTAATGCTAAT+TGG - chr4_3:54721706-54721725 None:intergenic 20.0%
!! CATTAATAGAAACTTTGTAT+TGG - chr4_3:54721937-54721956 None:intergenic 20.0%
!! CAATACAAAGTTTCTATTAA+TGG + chr4_3:54721935-54721954 Msa0648270:intron 20.0%
!!! AATAAATAAGAGTATGTTAG+AGG + chr4_3:54722163-54722182 Msa0648270:intron 20.0%
!!! TCAACTAACATTAATTTTTC+AGG + chr4_3:54723224-54723243 Msa0648270:intron 20.0%
!! TCAAAAGAAAACCATTTATT+AGG + chr4_3:54723306-54723325 Msa0648270:intron 20.0%
!!! CATTTCATCTTTTTTTTGTT+GGG - chr4_3:54723698-54723717 None:intergenic 20.0%
!!! TCATTTCATCTTTTTTTTGT+TGG - chr4_3:54723699-54723718 None:intergenic 20.0%
!!! GTTTAGTTTCATCAATAAAA+AGG + chr4_3:54723795-54723814 Msa0648270:three_prime_UTR 20.0%
!! TATTTATAATGTACCTCAAT+TGG + chr4_3:54723870-54723889 Msa0648270:intron 20.0%
! AATGGAATTGAGAACATATA+AGG - chr4_3:54716325-54716344 None:intergenic 25.0%
! TTCTCAATTCCATTTAATCT+TGG + chr4_3:54716331-54716350 Msa0648270:five_prime_UTR 25.0%
! ACTTCATATCCAAGATTAAA+TGG - chr4_3:54716343-54716362 None:intergenic 25.0%
!!! ATGAGTTTTGATATTGTTGT+TGG - chr4_3:54716495-54716514 None:intergenic 25.0%
!! GCAACAATTTTCTTTTTACA+GGG + chr4_3:54716523-54716542 Msa0648270:five_prime_UTR 25.0%
!! CAACAATTTTCTTTTTACAG+GGG + chr4_3:54716524-54716543 Msa0648270:five_prime_UTR 25.0%
! ATTATTCAGGAATTAAGACT+CGG - chr4_3:54716584-54716603 None:intergenic 25.0%
!! TGTCTTGTTAGGTTAAAAAA+AGG + chr4_3:54716603-54716622 Msa0648270:five_prime_UTR 25.0%
!! TTGATAATACAAGACAAGAA+GGG + chr4_3:54717108-54717127 Msa0648270:five_prime_UTR 25.0%
! TGATTCAGACAAATCATATA+CGG + chr4_3:54717134-54717153 Msa0648270:five_prime_UTR 25.0%
! AGCAACCTAAATAAAATAAC+AGG + chr4_3:54717185-54717204 Msa0648270:five_prime_UTR 25.0%
! ATTATTAACATGTGCCTTTA+GGG - chr4_3:54717501-54717520 None:intergenic 25.0%
! AATTATTAACATGTGCCTTT+AGG - chr4_3:54717502-54717521 None:intergenic 25.0%
! TGTAAGAAATTGTGCAAATT+TGG - chr4_3:54717577-54717596 None:intergenic 25.0%
!! AATGCTAATTTGTGTCTTTA+GGG - chr4_3:54717632-54717651 None:intergenic 25.0%
!! TAATGCTAATTTGTGTCTTT+AGG - chr4_3:54717633-54717652 None:intergenic 25.0%
! CATTCGTACTTAAATTTGTA+TGG - chr4_3:54717815-54717834 None:intergenic 25.0%
! TACAAATTTAAGTACGAATG+TGG + chr4_3:54717815-54717834 Msa0648270:five_prime_UTR 25.0%
! AGACTGTGTAAAACAAATAA+TGG + chr4_3:54717974-54717993 Msa0648270:five_prime_UTR 25.0%
! GAAATATAATGAAATTGTGC+TGG + chr4_3:54717996-54718015 Msa0648270:five_prime_UTR 25.0%
! TCCAAAAACATATGAACATA+GGG - chr4_3:54718198-54718217 None:intergenic 25.0%
! ATCCAAAAACATATGAACAT+AGG - chr4_3:54718199-54718218 None:intergenic 25.0%
! TTATCTCTCACCTATATAAA+TGG - chr4_3:54718402-54718421 None:intergenic 25.0%
! TATGAAATGGAAAAAAGTAG+AGG + chr4_3:54718431-54718450 Msa0648270:CDS 25.0%
!!! AATTCAACTGACTCATTTTT+GGG - chr4_3:54718492-54718511 None:intergenic 25.0%
! TTAACAATTGTGATGATTTG+CGG - chr4_3:54718743-54718762 None:intergenic 25.0%
! ATCAGAGATTGAATTGAAAA+GGG - chr4_3:54718811-54718830 None:intergenic 25.0%
! AATCAGAGATTGAATTGAAA+AGG - chr4_3:54718812-54718831 None:intergenic 25.0%
!! TTCAATTCAATCTCTGATTT+TGG + chr4_3:54718813-54718832 Msa0648270:CDS 25.0%
! AAGATGATAAATCACCTATA+TGG + chr4_3:54718865-54718884 Msa0648270:CDS 25.0%
! ACAATAAATGATGTGATTAC+TGG + chr4_3:54719382-54719401 Msa0648270:CDS 25.0%
! CAATAAATGATGTGATTACT+GGG + chr4_3:54719383-54719402 Msa0648270:CDS 25.0%
! AATAAATGATGTGATTACTG+GGG + chr4_3:54719384-54719403 Msa0648270:CDS 25.0%
!! TATGCAAGAGATTGATAATA+AGG + chr4_3:54719432-54719451 Msa0648270:CDS 25.0%
! AAGCACAAAAAATAATCAAG+AGG + chr4_3:54719641-54719660 Msa0648270:CDS 25.0%
! AAAAGTAAAGATGCTTAAAG+AGG - chr4_3:54719935-54719954 None:intergenic 25.0%
! TTGAATTATGAACAAAGAGA+TGG + chr4_3:54719999-54720018 Msa0648270:intron 25.0%
!! AAGAAAGAGTGTGTTAAAAT+AGG - chr4_3:54720360-54720379 None:intergenic 25.0%
!! AGTTGCATTCATTTTCAAAA+TGG - chr4_3:54720423-54720442 None:intergenic 25.0%
! AAATGTTAAAATCAGTGTTG+CGG + chr4_3:54720483-54720502 Msa0648270:intron 25.0%
!! AGGCTTTTTATAAATAAGAG+AGG - chr4_3:54720746-54720765 None:intergenic 25.0%
!! TATGGATGTGTATTTTATTG+TGG - chr4_3:54720850-54720869 None:intergenic 25.0%
!! AGTTTCTGGAAAATATTTCA+TGG + chr4_3:54720893-54720912 Msa0648270:intron 25.0%
! CTAACGATATAGAATAGAAA+TGG - chr4_3:54720923-54720942 None:intergenic 25.0%
! TAGAGAGAAATGAAGATAAA+TGG + chr4_3:54720940-54720959 Msa0648270:intron 25.0%
! AACATGTATTAAAAAACGGA+GGG + chr4_3:54721369-54721388 Msa0648270:intron 25.0%
!! GATTTATTGACAAGTGTTTT+AGG - chr4_3:54721520-54721539 None:intergenic 25.0%
! TTAGCATGATTCTTCAAAAA+TGG + chr4_3:54721576-54721595 Msa0648270:intron 25.0%
! AAGCGAATTATAATTTAGGA+CGG - chr4_3:54721643-54721662 None:intergenic 25.0%
! TCCTAAATTATAATTCGCTT+TGG + chr4_3:54721643-54721662 Msa0648270:intron 25.0%
! TCCAAAGCGAATTATAATTT+AGG - chr4_3:54721647-54721666 None:intergenic 25.0%
! AAAACTCGCTAAAAACAAAA+AGG + chr4_3:54722373-54722392 Msa0648270:intron 25.0%
! TTAAATCTAGTCATATGTGT+AGG - chr4_3:54722461-54722480 None:intergenic 25.0%
! AAATAGAAAAACGAGTTAGA+GGG + chr4_3:54722709-54722728 Msa0648270:intron 25.0%
!!! TGTGATTTTAGAAGTTGTTA+TGG - chr4_3:54723139-54723158 None:intergenic 25.0%
!!! CTTCTAAAATCACATATGAA+TGG + chr4_3:54723145-54723164 Msa0648270:intron 25.0%
! GATTACGTATTCCTAATAAA+TGG - chr4_3:54723320-54723339 None:intergenic 25.0%
! TTATTAGGAATACGTAATCA+AGG + chr4_3:54723321-54723340 Msa0648270:intron 25.0%
! TATTAGGAATACGTAATCAA+GGG + chr4_3:54723322-54723341 Msa0648270:intron 25.0%
!! TAACAATTCTCATATTGGTT+AGG + chr4_3:54723346-54723365 Msa0648270:intron 25.0%
! ACTTCAAAACTACTAACAAT+TGG - chr4_3:54723411-54723430 None:intergenic 25.0%
! AAGATGAAATGAACAATCTA+TGG + chr4_3:54723707-54723726 Msa0648270:exon 25.0%
! CAAATATTATAAGCCAACAT+TGG - chr4_3:54724012-54724031 None:intergenic 25.0%
! AGTCTAATACAAGAGTGTAT+CGG - chr4_3:54716397-54716416 None:intergenic 30.0%
! CGCAACAATTTTCTTTTTAC+AGG + chr4_3:54716522-54716541 Msa0648270:five_prime_UTR 30.0%
TTATTCAGGAATTAAGACTC+GGG - chr4_3:54716583-54716602 None:intergenic 30.0%
! TTCCTGAATAATGTCTTGTT+AGG + chr4_3:54716592-54716611 Msa0648270:five_prime_UTR 30.0%
AACCTAACAAGACATTATTC+AGG - chr4_3:54716597-54716616 None:intergenic 30.0%
AGGTAAATCAACATTGTAAC+CGG + chr4_3:54716623-54716642 Msa0648270:five_prime_UTR 30.0%
ATGCATTGCTTCTTATAAAC+CGG - chr4_3:54716645-54716664 None:intergenic 30.0%
CATCAAAGCAGAATAACTAA+AGG - chr4_3:54716696-54716715 None:intergenic 30.0%
AAAGAGACCGTAATATTTGA+AGG - chr4_3:54717044-54717063 None:intergenic 30.0%
!! GTTGATAATACAAGACAAGA+AGG + chr4_3:54717107-54717126 Msa0648270:five_prime_UTR 30.0%
TGATAATACAAGACAAGAAG+GGG + chr4_3:54717109-54717128 Msa0648270:five_prime_UTR 30.0%
! GTATATGATTTGTCTGAATC+AGG - chr4_3:54717135-54717154 None:intergenic 30.0%
TATCCTTGAAACCATTTAAG+CGG + chr4_3:54717214-54717233 Msa0648270:five_prime_UTR 30.0%
! CTGTACATGGTGTAAATTTT+TGG + chr4_3:54717695-54717714 Msa0648270:five_prime_UTR 30.0%
!!! TGTAAATTTTTGGTTGAAGC+AGG + chr4_3:54717705-54717724 Msa0648270:five_prime_UTR 30.0%
! ATCATTTTCGTACATATTGC+CGG + chr4_3:54717738-54717757 Msa0648270:five_prime_UTR 30.0%
TAAATTGTGATAAATGTCGC+CGG - chr4_3:54717760-54717779 None:intergenic 30.0%
! TTTCCTTTTGATCATAAACG+TGG - chr4_3:54717890-54717909 None:intergenic 30.0%
! TGCACTTGTATTTTCAATGT+TGG - chr4_3:54718091-54718110 None:intergenic 30.0%
AGTGCATAGATCATAATCAA+TGG + chr4_3:54718112-54718131 Msa0648270:exon 30.0%
CCAAAAACATATGAACATAG+GGG - chr4_3:54718197-54718216 None:intergenic 30.0%
! AAAAGTACGTACTATTATGG+AGG - chr4_3:54718306-54718325 None:intergenic 30.0%
ATGCATGCAACCATTTATAT+AGG + chr4_3:54718389-54718408 Msa0648270:intron 30.0%
ATATAGGTGAGAGATAAAGA+TGG + chr4_3:54718405-54718424 Msa0648270:intron 30.0%
! GGAACCTTAAAATGATCTTT+TGG - chr4_3:54718462-54718481 None:intergenic 30.0%
!! ATTCAACTGACTCATTTTTG+GGG - chr4_3:54718491-54718510 None:intergenic 30.0%
!! GAATTCAACTGACTCATTTT+TGG - chr4_3:54718493-54718512 None:intergenic 30.0%
! TTGTTGGATACTTGATAACA+TGG - chr4_3:54718593-54718612 None:intergenic 30.0%
TGAATTGAAAAGGGAGAATA+TGG - chr4_3:54718802-54718821 None:intergenic 30.0%
! ATTCAATCTCTGATTTTGGA+TGG + chr4_3:54718817-54718836 Msa0648270:CDS 30.0%
GATAAATCACCTATATGGAA+TGG + chr4_3:54718870-54718889 Msa0648270:CDS 30.0%
ATAACAATCAAGTCTAAGCT+TGG + chr4_3:54718957-54718976 Msa0648270:CDS 30.0%
! TTTTTGATCAAATAGCCTAG+TGG + chr4_3:54719180-54719199 Msa0648270:intron 30.0%
GGAGGTCATATATTTAAATG+TGG + chr4_3:54719205-54719224 Msa0648270:intron 30.0%
! ATTACTGGGGTAATTTTCTA+TGG + chr4_3:54719397-54719416 Msa0648270:CDS 30.0%
! GGGTAATTTTCTATGGTATT+AGG + chr4_3:54719404-54719423 Msa0648270:CDS 30.0%
AATGTCAAATTCAACAGGAT+TGG + chr4_3:54719459-54719478 Msa0648270:CDS 30.0%
CTTTCCAAACAAAATCTAAG+GGG - chr4_3:54719624-54719643 None:intergenic 30.0%
GCTTTCCAAACAAAATCTAA+GGG - chr4_3:54719625-54719644 None:intergenic 30.0%
TGCTTTCCAAACAAAATCTA+AGG - chr4_3:54719626-54719645 None:intergenic 30.0%
!!! TCAAGAACTTTTGACTTGTT+TGG - chr4_3:54719818-54719837 None:intergenic 30.0%
TGTACATCCTGAGTAATTTA+GGG + chr4_3:54719898-54719917 Msa0648270:intron 30.0%
AAAGATGGTGAGTAAAACAT+TGG + chr4_3:54720156-54720175 Msa0648270:intron 30.0%
! AATAGATTTTTACGAGTGTG+TGG + chr4_3:54720242-54720261 Msa0648270:intron 30.0%
AGCTATAAAATATGTGTTGC+AGG + chr4_3:54720548-54720567 Msa0648270:intron 30.0%
ATAAAATACAAGCCTTTCAC+AGG - chr4_3:54720669-54720688 None:intergenic 30.0%
! GGCTTGTATTTTATAATGTC+TGG + chr4_3:54720675-54720694 Msa0648270:CDS 30.0%
TACACATCCATAAGTATAGT+AGG + chr4_3:54720858-54720877 Msa0648270:intron 30.0%
TTGAACTCCTACTATACTTA+TGG - chr4_3:54720868-54720887 None:intergenic 30.0%
CAACATGTATTAAAAAACGG+AGG + chr4_3:54721368-54721387 Msa0648270:intron 30.0%
TCTTGACAGCTCATAATAAA+AGG + chr4_3:54721424-54721443 Msa0648270:intron 30.0%
CCACACAATTATATTATCCA+TGG - chr4_3:54721480-54721499 None:intergenic 30.0%
CCATGGATAATATAATTGTG+TGG + chr4_3:54721477-54721496 Msa0648270:intron 30.0%
AACCTAAATGCGAAACTTAA+TGG - chr4_3:54721557-54721576 None:intergenic 30.0%
!! GTTAGTTGTGTTGATTTCAA+TGG + chr4_3:54721598-54721617 Msa0648270:intron 30.0%
ATTCTTAATCATTGCCCTTA+AGG + chr4_3:54721959-54721978 Msa0648270:intron 30.0%
ATTTCTCAATTTGTGCGAAA+TGG + chr4_3:54722047-54722066 Msa0648270:intron 30.0%
GTCCAAACGATCTATAATTT+GGG + chr4_3:54722069-54722088 Msa0648270:intron 30.0%
AAACGATCTATAATTTGGGA+CGG + chr4_3:54722073-54722092 Msa0648270:intron 30.0%
TATGACTAGATTTAAGTCTC+CGG + chr4_3:54722466-54722485 Msa0648270:intron 30.0%
TGTATTTGTTCGATTCAGAT+TGG - chr4_3:54722571-54722590 None:intergenic 30.0%
GAAATAGAAAAACGAGTTAG+AGG + chr4_3:54722708-54722727 Msa0648270:intron 30.0%
AATAGAAAAACGAGTTAGAG+GGG + chr4_3:54722710-54722729 Msa0648270:intron 30.0%
! AGGAGAAGAAACTAGAATTT+TGG + chr4_3:54722782-54722801 Msa0648270:intron 30.0%
!! ATTTGCTATAGCACTTGTTA+AGG - chr4_3:54722955-54722974 None:intergenic 30.0%
AGGGATAACAATTCTCATAT+TGG + chr4_3:54723341-54723360 Msa0648270:intron 30.0%
! AATTCTCATATTGGTTAGGA+TGG + chr4_3:54723350-54723369 Msa0648270:intron 30.0%
TCACAAAGAATAGCATGTTA+TGG - chr4_3:54723525-54723544 None:intergenic 30.0%
! TGCTTTGGATATGATTTCAA+AGG - chr4_3:54723660-54723679 None:intergenic 30.0%
ATAATGAAACTCCTAGACAA+TGG - chr4_3:54723764-54723783 None:intergenic 30.0%
TTATAATGTACCTCAATTGG+AGG + chr4_3:54723873-54723892 Msa0648270:intron 30.0%
!! TAAGTTTTGTGGACTAAGTT+TGG + chr4_3:54723914-54723933 Msa0648270:three_prime_UTR 30.0%
! CTCACAATTTTATCCAATGT+TGG + chr4_3:54723996-54724015 Msa0648270:three_prime_UTR 30.0%
GTTACAACCCAAGAACATAT+CGG + chr4_3:54716361-54716380 Msa0648270:five_prime_UTR 35.0%
CTAACTACCGATATGTTCTT+GGG - chr4_3:54716371-54716390 None:intergenic 35.0%
TCTAACTACCGATATGTTCT+TGG - chr4_3:54716372-54716391 None:intergenic 35.0%
TGGTTGTTGAATCATGTGTT+TGG - chr4_3:54716438-54716457 None:intergenic 35.0%
! TTCTTTTTACAGGGGATGAA+TGG + chr4_3:54716532-54716551 Msa0648270:five_prime_UTR 35.0%
CAAACTTGGATGAATGGAAT+AGG + chr4_3:54716762-54716781 Msa0648270:five_prime_UTR 35.0%
GATGAATGGAATAGGAATGT+TGG + chr4_3:54716770-54716789 Msa0648270:five_prime_UTR 35.0%
TGAGAAATGTAGTACAAGTG+AGG + chr4_3:54716800-54716819 Msa0648270:five_prime_UTR 35.0%
GAGAAATGTAGTACAAGTGA+GGG + chr4_3:54716801-54716820 Msa0648270:five_prime_UTR 35.0%
AGAAATGTAGTACAAGTGAG+GGG + chr4_3:54716802-54716821 Msa0648270:five_prime_UTR 35.0%
TGAAAACTTAGTCCCCAAAT+AGG + chr4_3:54716865-54716884 Msa0648270:five_prime_UTR 35.0%
TTGTAGTTTCCGACCTATTT+GGG - chr4_3:54716881-54716900 None:intergenic 35.0%
TTTGTAGTTTCCGACCTATT+TGG - chr4_3:54716882-54716901 None:intergenic 35.0%
TCGGAAACTACAAACTATGA+GGG + chr4_3:54716888-54716907 Msa0648270:five_prime_UTR 35.0%
AATAGGAAAGCTGCTCAATA+GGG - chr4_3:54716954-54716973 None:intergenic 35.0%
TAATAGGAAAGCTGCTCAAT+AGG - chr4_3:54716955-54716974 None:intergenic 35.0%
!!! TGTCTTTAGGGCACATTTTA+AGG - chr4_3:54717620-54717639 None:intergenic 35.0%
!! AGAGGCATTAAAACTGTACA+TGG + chr4_3:54717682-54717701 Msa0648270:five_prime_UTR 35.0%
! GTATTTTCAATGTTGGCACT+GGG - chr4_3:54718084-54718103 None:intergenic 35.0%
! TGTATTTTCAATGTTGGCAC+TGG - chr4_3:54718085-54718104 None:intergenic 35.0%
AAACATATGAACATAGGGGA+GGG - chr4_3:54718193-54718212 None:intergenic 35.0%
AAAACATATGAACATAGGGG+AGG - chr4_3:54718194-54718213 None:intergenic 35.0%
! CCCCTATGTTCATATGTTTT+TGG + chr4_3:54718194-54718213 Msa0648270:CDS 35.0%
ATAGCTTGAGAGTCATCAAT+TGG - chr4_3:54718239-54718258 None:intergenic 35.0%
TGATAGGTAAGAACACATGT+TGG - chr4_3:54718271-54718290 None:intergenic 35.0%
ATAACATGGATTTCCCAAAG+GGG - chr4_3:54718579-54718598 None:intergenic 35.0%
GATAACATGGATTTCCCAAA+GGG - chr4_3:54718580-54718599 None:intergenic 35.0%
TGATAACATGGATTTCCCAA+AGG - chr4_3:54718581-54718600 None:intergenic 35.0%
TTCAAACTTCATCATGCACT+TGG + chr4_3:54718636-54718655 Msa0648270:CDS 35.0%
! AATTGTGATGATTTGCGGTT+AGG - chr4_3:54718738-54718757 None:intergenic 35.0%
CAATTGTTAACTCCTAAGAG+AGG + chr4_3:54718753-54718772 Msa0648270:CDS 35.0%
AAAGGGAGAATATGGTTGAA+GGG - chr4_3:54718794-54718813 None:intergenic 35.0%
AAAAGGGAGAATATGGTTGA+AGG - chr4_3:54718795-54718814 None:intergenic 35.0%
TTTCATCGAGAGAGAATGAT+AGG - chr4_3:54718935-54718954 None:intergenic 35.0%
GCAAGAATGTCAAATTCAAC+AGG + chr4_3:54719454-54719473 Msa0648270:CDS 35.0%
AAAGAAATATGATTCCCCCA+AGG - chr4_3:54719556-54719575 None:intergenic 35.0%
CAAAATCTAAGGGGTTAGAT+AGG - chr4_3:54719615-54719634 None:intergenic 35.0%
! CTAACCCCTTAGATTTTGTT+TGG + chr4_3:54719617-54719636 Msa0648270:CDS 35.0%
!! TCACTGTTTTTCTCACTGAA+TGG + chr4_3:54719677-54719696 Msa0648270:CDS 35.0%
GATATGCAGCTGAAATTAAG+AGG + chr4_3:54719706-54719725 Msa0648270:CDS 35.0%
AAATTAAGAGGACATGAGGT+GGG + chr4_3:54719718-54719737 Msa0648270:intron 35.0%
GTGTACATCCTGAGTAATTT+AGG + chr4_3:54719897-54719916 Msa0648270:intron 35.0%
!! TTTCTAGAGCAATTCTTGTG+TGG - chr4_3:54720295-54720314 None:intergenic 35.0%
GCAGTTGCTAAACATCTATA+TGG + chr4_3:54720570-54720589 Msa0648270:CDS 35.0%
GTTGTCATGTCCAATTTGAT+CGG + chr4_3:54720612-54720631 Msa0648270:CDS 35.0%
TTGTCATGTCCAATTTGATC+GGG + chr4_3:54720613-54720632 Msa0648270:CDS 35.0%
! AAAAGATGATGGTTTACCTC+AGG - chr4_3:54720705-54720724 None:intergenic 35.0%
! AAACCATCATCTTTTCTCTC+TGG + chr4_3:54720710-54720729 Msa0648270:intron 35.0%
AAACCAGAGAGAAAAGATGA+TGG - chr4_3:54720716-54720735 None:intergenic 35.0%
! ATGCATTGACATGTTTGAAG+TGG - chr4_3:54721182-54721201 None:intergenic 35.0%
CTCCATTAAGTTTCGCATTT+AGG + chr4_3:54721552-54721571 Msa0648270:intron 35.0%
GGTCCAAACGATCTATAATT+TGG + chr4_3:54722068-54722087 Msa0648270:intron 35.0%
GTCCCAAATTATAGATCGTT+TGG - chr4_3:54722074-54722093 None:intergenic 35.0%
ACACTAATTATGAGAGAGAG+AGG + chr4_3:54722256-54722275 Msa0648270:intron 35.0%
GCAGATCAAATCAATGACTT+TGG - chr4_3:54722528-54722547 None:intergenic 35.0%
AAATCACATATGAATGGTCG+TGG + chr4_3:54723151-54723170 Msa0648270:intron 35.0%
AACAATCTATGGAGAAAGAG+AGG + chr4_3:54723718-54723737 Msa0648270:exon 35.0%
ACAATCTATGGAGAAAGAGA+GGG + chr4_3:54723719-54723738 Msa0648270:three_prime_UTR 35.0%
AGTATTCAATGCCATTGTCT+AGG + chr4_3:54723750-54723769 Msa0648270:three_prime_UTR 35.0%
AGTTCACATTCTAAACCACT+TGG + chr4_3:54723938-54723957 Msa0648270:three_prime_UTR 35.0%
TTTACAGGGGATGAATGGTT+CGG + chr4_3:54716537-54716556 Msa0648270:five_prime_UTR 40.0%
GAATGGAATAGGAATGTTGG+TGG + chr4_3:54716773-54716792 Msa0648270:five_prime_UTR 40.0%
AACTTAGTCCCCAAATAGGT+CGG + chr4_3:54716869-54716888 Msa0648270:five_prime_UTR 40.0%
TGTAGTTTCCGACCTATTTG+GGG - chr4_3:54716880-54716899 None:intergenic 40.0%
GTCGGAAACTACAAACTATG+AGG + chr4_3:54716887-54716906 Msa0648270:five_prime_UTR 40.0%
CGGAAACTACAAACTATGAG+GGG + chr4_3:54716889-54716908 Msa0648270:five_prime_UTR 40.0%
! CAAACTATGAGGGGCTTTTA+TGG + chr4_3:54716898-54716917 Msa0648270:five_prime_UTR 40.0%
ATAGGAAAGCTGCTCAATAG+GGG - chr4_3:54716953-54716972 None:intergenic 40.0%
TCTCTTTACCTCGAGAACTA+GGG + chr4_3:54717057-54717076 Msa0648270:five_prime_UTR 40.0%
! TAATTCGAGCACCGCTTAAA+TGG - chr4_3:54717228-54717247 None:intergenic 40.0%
GAATTAATGTCCCAGTCGAT+CGG + chr4_3:54717242-54717261 Msa0648270:five_prime_UTR 40.0%
TAAATTCATGCCGATCGACT+GGG - chr4_3:54717255-54717274 None:intergenic 40.0%
ATAAATTCATGCCGATCGAC+TGG - chr4_3:54717256-54717275 None:intergenic 40.0%
TCATAAACGTGGCTCTTGAA+CGG - chr4_3:54717879-54717898 None:intergenic 40.0%
GAGCCACGTTTATGATCAAA+AGG + chr4_3:54717884-54717903 Msa0648270:five_prime_UTR 40.0%
TTTGATTGGATCCTCACATC+TGG - chr4_3:54718035-54718054 None:intergenic 40.0%
AGGATCCAATCAAATTGTGC+TGG + chr4_3:54718041-54718060 Msa0648270:five_prime_UTR 40.0%
TATTGTCCACTTGGACTTAC+TGG - chr4_3:54718161-54718180 None:intergenic 40.0%
!! GTGTTGAAGTATTGTCCACT+TGG - chr4_3:54718170-54718189 None:intergenic 40.0%
AACATATGAACATAGGGGAG+GGG - chr4_3:54718192-54718211 None:intergenic 40.0%
!! GACTCATTTTTGGGGAACAT+TGG - chr4_3:54718483-54718502 None:intergenic 40.0%
ACCAAAAGACAAACCCCTTT+GGG + chr4_3:54718563-54718582 Msa0648270:CDS 40.0%
GGAAAAGACAAAGGAAGAGA+AGG - chr4_3:54718717-54718736 None:intergenic 40.0%
TTGCGGTTAGGAAAAGACAA+AGG - chr4_3:54718726-54718745 None:intergenic 40.0%
CACTTGAAAAAGCCTCTCTT+AGG - chr4_3:54718768-54718787 None:intergenic 40.0%
!!! CTAAGAGAGGCTTTTTCAAG+TGG + chr4_3:54718766-54718785 Msa0648270:CDS 40.0%
ATCACCTATATGGAATGGTG+AGG + chr4_3:54718875-54718894 Msa0648270:CDS 40.0%
!! GATAGGTTTGATAGTGCACA+AGG - chr4_3:54718918-54718937 None:intergenic 40.0%
AATCAAGTCTAAGCTTGGAG+TGG + chr4_3:54718962-54718981 Msa0648270:CDS 40.0%
ACATTGCATCATACACACAG+AGG - chr4_3:54719262-54719281 None:intergenic 40.0%
TTGCTAAGTACCAGGAACAT+TGG + chr4_3:54719484-54719503 Msa0648270:CDS 40.0%
! TTGGTAACTTCCAATGTTCC+TGG - chr4_3:54719497-54719516 None:intergenic 40.0%
TGGTCATGTCTTGGATTGAT+TGG - chr4_3:54719516-54719535 None:intergenic 40.0%
ATCAATCCAAGACATGACCA+AGG + chr4_3:54719516-54719535 Msa0648270:CDS 40.0%
! AGGAGATTTTGAATCAGCCT+TGG - chr4_3:54719536-54719555 None:intergenic 40.0%
! AGGCTGATTCAAAATCTCCT+TGG + chr4_3:54719536-54719555 Msa0648270:CDS 40.0%
! GGCTGATTCAAAATCTCCTT+GGG + chr4_3:54719537-54719556 Msa0648270:CDS 40.0%
! GCTGATTCAAAATCTCCTTG+GGG + chr4_3:54719538-54719557 Msa0648270:CDS 40.0%
CTGATTCAAAATCTCCTTGG+GGG + chr4_3:54719539-54719558 Msa0648270:CDS 40.0%
GCTGAAATTAAGAGGACATG+AGG + chr4_3:54719714-54719733 Msa0648270:CDS 40.0%
GAAATTAAGAGGACATGAGG+TGG + chr4_3:54719717-54719736 Msa0648270:intron 40.0%
TCAGGATGTACACATCTGAA+GGG - chr4_3:54719890-54719909 None:intergenic 40.0%
ACATCCTGAGTAATTTAGGG+TGG + chr4_3:54719901-54719920 Msa0648270:intron 40.0%
! CATCCTGAGTAATTTAGGGT+GGG + chr4_3:54719902-54719921 Msa0648270:intron 40.0%
TTTCCCACCCTAAATTACTC+AGG - chr4_3:54719908-54719927 None:intergenic 40.0%
AATACAAGCCTTTCACAGGA+TGG - chr4_3:54720665-54720684 None:intergenic 40.0%
!! ATCTTTTCTCTCTGGTTTGC+TGG + chr4_3:54720718-54720737 Msa0648270:intron 40.0%
GGAGTTCAAGAGTAAGTTTC+TGG + chr4_3:54720879-54720898 Msa0648270:intron 40.0%
TACTTTAACCAATGCCCCAA+GGG - chr4_3:54721845-54721864 None:intergenic 40.0%
!! GTCATTGATTTGATCTGCAC+TGG + chr4_3:54722530-54722549 Msa0648270:intron 40.0%
!! ACAGAAGTTCAAGTTGTGCA+TGG + chr4_3:54723628-54723647 Msa0648270:CDS 40.0%
CATATCCAAAGCAGCATCAA+TGG + chr4_3:54723667-54723686 Msa0648270:CDS 40.0%
! AATCTCCATTGATGCTGCTT+TGG - chr4_3:54723675-54723694 None:intergenic 40.0%
CAATCTATGGAGAAAGAGAG+GGG + chr4_3:54723720-54723739 Msa0648270:three_prime_UTR 40.0%
ACATGACATTCCTCCAATTG+AGG - chr4_3:54723886-54723905 None:intergenic 40.0%
! AGGTGTTGTGAAATTCCAAG+TGG - chr4_3:54723956-54723975 None:intergenic 40.0%
TTACAGGGGATGAATGGTTC+GGG + chr4_3:54716538-54716557 Msa0648270:five_prime_UTR 45.0%
! GGATGAATGGTTCGGGAATT+AGG + chr4_3:54716545-54716564 Msa0648270:five_prime_UTR 45.0%
CGTGAGCAAACTTGGATGAA+TGG + chr4_3:54716756-54716775 Msa0648270:five_prime_UTR 45.0%
! TAGTACAAGTGAGGGGCTTT+TGG + chr4_3:54716809-54716828 Msa0648270:five_prime_UTR 45.0%
! GGGACTAAGTTTTCATCGCT+CGG - chr4_3:54716860-54716879 None:intergenic 45.0%
TAGGAAAGCTGCTCAATAGG+GGG - chr4_3:54716952-54716971 None:intergenic 45.0%
GTCTCTTTACCTCGAGAACT+AGG + chr4_3:54717056-54717075 Msa0648270:five_prime_UTR 45.0%
CTCTTTACCTCGAGAACTAG+GGG + chr4_3:54717058-54717077 Msa0648270:five_prime_UTR 45.0%
TCTTTACCTCGAGAACTAGG+GGG + chr4_3:54717059-54717078 Msa0648270:five_prime_UTR 45.0%
!! TTTTTACCCCCTAGTTCTCG+AGG - chr4_3:54717068-54717087 None:intergenic 45.0%
GCACCGCTTAAATGGTTTCA+AGG - chr4_3:54717220-54717239 None:intergenic 45.0%
! CAGACTAACTTGTGCCCTAA+AGG + chr4_3:54717484-54717503 Msa0648270:five_prime_UTR 45.0%
CATAAACGTGGCTCTTGAAC+GGG - chr4_3:54717878-54717897 None:intergenic 45.0%
TGAATGTCACACCAGATGTG+AGG + chr4_3:54718021-54718040 Msa0648270:five_prime_UTR 45.0%
GCATGCCAGCACAATTTGAT+TGG - chr4_3:54718049-54718068 None:intergenic 45.0%
ACTATTATGGAGGAGAAGCG+TGG - chr4_3:54718296-54718315 None:intergenic 45.0%
CACCAAAAGACAAACCCCTT+TGG + chr4_3:54718562-54718581 Msa0648270:CDS 45.0%
! TCCCAAAGGGGTTTGTCTTT+TGG - chr4_3:54718567-54718586 None:intergenic 45.0%
GTGTAAGCAGCATTGCTTGT+TGG - chr4_3:54718609-54718628 None:intergenic 45.0%
! CTTCATCATGCACTTGGTGA+TGG + chr4_3:54718642-54718661 Msa0648270:CDS 45.0%
!! TGGTGATGGTTACTCTCTCA+TGG + chr4_3:54718656-54718675 Msa0648270:CDS 45.0%
! GGTGATGGTTACTCTCTCAT+GGG + chr4_3:54718657-54718676 Msa0648270:CDS 45.0%
CCTTCCTCACCATTCCATAT+AGG - chr4_3:54718882-54718901 None:intergenic 45.0%
CCTATATGGAATGGTGAGGA+AGG + chr4_3:54718879-54718898 Msa0648270:CDS 45.0%
TCGACATAATGTCCCTACCA+CGG + chr4_3:54719055-54719074 Msa0648270:intron 45.0%
GATCCTCTACCGCTATAGTA+GGG - chr4_3:54719086-54719105 None:intergenic 45.0%
AGATCCTCTACCGCTATAGT+AGG - chr4_3:54719087-54719106 None:intergenic 45.0%
TGATCAAATAGCCTAGTGGC+TGG + chr4_3:54719184-54719203 Msa0648270:intron 45.0%
ATATATGACCTCCAGCCACT+AGG - chr4_3:54719198-54719217 None:intergenic 45.0%
TGCATCATACACACAGAGGT+CGG - chr4_3:54719258-54719277 None:intergenic 45.0%
!! GATTGGTGTTGCTAAGTACC+AGG + chr4_3:54719476-54719495 Msa0648270:CDS 45.0%
AATCAGCCTTGGTCATGTCT+TGG - chr4_3:54719525-54719544 None:intergenic 45.0%
!! GCTTGGCTTAACTTTGGGAT+TGG - chr4_3:54719589-54719608 None:intergenic 45.0%
ATCTAAGGGGTTAGATAGGC+TGG - chr4_3:54719611-54719630 None:intergenic 45.0%
CTCAGGATGTACACATCTGA+AGG - chr4_3:54719891-54719910 None:intergenic 45.0%
GCAATTCTTGTGTGGAGACA+AGG - chr4_3:54720287-54720306 None:intergenic 45.0%
TTGGCAAACCATCCTGTGAA+AGG + chr4_3:54720654-54720673 Msa0648270:CDS 45.0%
TATAATGTCTGGTGCACCTG+AGG + chr4_3:54720686-54720705 Msa0648270:CDS 45.0%
AGAATGCTAACCATTGCCCT+TGG + chr4_3:54721826-54721845 Msa0648270:intron 45.0%
GAATGCTAACCATTGCCCTT+GGG + chr4_3:54721827-54721846 Msa0648270:intron 45.0%
AATGCTAACCATTGCCCTTG+GGG + chr4_3:54721828-54721847 Msa0648270:intron 45.0%
GTACTTTAACCAATGCCCCA+AGG - chr4_3:54721846-54721865 None:intergenic 45.0%
CTTGCTAAGCAGTGCCTTAA+GGG - chr4_3:54721976-54721995 None:intergenic 45.0%
TCTTGCTAAGCAGTGCCTTA+AGG - chr4_3:54721977-54721996 None:intergenic 45.0%
! ACGAGTTAGAGGGGTGATTT+TGG + chr4_3:54722719-54722738 Msa0648270:intron 45.0%
! CGAGTTAGAGGGGTGATTTT+GGG + chr4_3:54722720-54722739 Msa0648270:intron 45.0%
CACCAACTAGGGGTGATTTA+GGG - chr4_3:54722757-54722776 None:intergenic 45.0%
TCTCCTTCATCCACCAACTA+GGG - chr4_3:54722768-54722787 None:intergenic 45.0%
TTCTCCTTCATCCACCAACT+AGG - chr4_3:54722769-54722788 None:intergenic 45.0%
GTGATGACTCACAAGAGAGA+AGG + chr4_3:54722804-54722823 Msa0648270:intron 45.0%
!!! TTTAATTTTTTTAAAAAAGA+TGG + chr4_3:54720141-54720160 Msa0648270:intron 5.0%
!! AATAAATAATACATAATTAA+GGG - chr4_3:54721738-54721757 None:intergenic 5.0%
!! TAATAAATAATACATAATTA+AGG - chr4_3:54721739-54721758 None:intergenic 5.0%
!!! AATAAAGAATAATTTTTTAA+AGG + chr4_3:54721803-54721822 Msa0648270:intron 5.0%
!! TAATCTTAATAATAAAATTA+AGG - chr4_3:54723026-54723045 None:intergenic 5.0%
ATTAAGACTCGGGCCTGGTT+CGG - chr4_3:54716573-54716592 None:intergenic 50.0%
! ACAAGTGAGGGGCTTTTGGA+TGG + chr4_3:54716813-54716832 Msa0648270:five_prime_UTR 50.0%
! CAAGTGAGGGGCTTTTGGAT+GGG + chr4_3:54716814-54716833 Msa0648270:five_prime_UTR 50.0%
! GGGGCTTTTATGGAAACTCG+AGG + chr4_3:54716908-54716927 Msa0648270:five_prime_UTR 50.0%
GTATGGTCACACGACTGACA+TGG - chr4_3:54717798-54717817 None:intergenic 50.0%
ACTGAGCCAGTAAGTCCAAG+TGG + chr4_3:54718152-54718171 Msa0648270:CDS 50.0%
! GAGGAGAAGCGTGGATTGAT+AGG - chr4_3:54718287-54718306 None:intergenic 50.0%
GATCCTCTAGCACTGCAGTA+TGG + chr4_3:54719019-54719038 Msa0648270:intron 50.0%
ACACCATACTGCAGTGCTAG+AGG - chr4_3:54719025-54719044 None:intergenic 50.0%
ACGGCAACACCCTACTATAG+CGG + chr4_3:54719074-54719093 Msa0648270:intron 50.0%
ACACCCTACTATAGCGGTAG+AGG + chr4_3:54719080-54719099 Msa0648270:intron 50.0%
TCAAATAGCCTAGTGGCTGG+AGG + chr4_3:54719187-54719206 Msa0648270:intron 50.0%
! GTGGAGAAATAGGGTGTTCG+AGG + chr4_3:54719224-54719243 Msa0648270:intron 50.0%
CATCATACACACAGAGGTCG+GGG - chr4_3:54719256-54719275 None:intergenic 50.0%
GCATCATACACACAGAGGTC+GGG - chr4_3:54719257-54719276 None:intergenic 50.0%
!! GGCTGGCTTGGCTTAACTTT+GGG - chr4_3:54719594-54719613 None:intergenic 50.0%
!! AGGCTGGCTTGGCTTAACTT+TGG - chr4_3:54719595-54719614 None:intergenic 50.0%
TTCCACTGGCCCGATCAAAT+TGG - chr4_3:54720625-54720644 None:intergenic 50.0%
! GGATGGTTTGCCAAAGCCAT+AGG - chr4_3:54720648-54720667 None:intergenic 50.0%
ATCCGGAGACATGGGTATTC+CGG - chr4_3:54722488-54722507 None:intergenic 50.0%
AGTCGTCAACGTTGCAGATC+CGG - chr4_3:54722505-54722524 None:intergenic 50.0%
GACCCTAAATCACCCCTAGT+TGG + chr4_3:54722752-54722771 Msa0648270:intron 50.0%
CCACCAACTAGGGGTGATTT+AGG - chr4_3:54722758-54722777 None:intergenic 50.0%
CCTAAATCACCCCTAGTTGG+TGG + chr4_3:54722755-54722774 Msa0648270:intron 50.0%
CTCCTTCATCCACCAACTAG+GGG - chr4_3:54722767-54722786 None:intergenic 50.0%
TATGAATGGTCGTGGACTCG+TGG + chr4_3:54723159-54723178 Msa0648270:intron 50.0%
TTAAGACTCGGGCCTGGTTC+GGG - chr4_3:54716572-54716591 None:intergenic 55.0%
CAGGAATTAAGACTCGGGCC+TGG - chr4_3:54716578-54716597 None:intergenic 55.0%
GGTGAGCACGTGAGCAAACT+TGG + chr4_3:54716748-54716767 Msa0648270:five_prime_UTR 55.0%
! TGAGGGGCTTTTGGATGGGT+CGG + chr4_3:54716818-54716837 Msa0648270:five_prime_UTR 55.0%
!! AGTAGGGTGTTGCCGTGGTA+GGG - chr4_3:54719070-54719089 None:intergenic 55.0%
!! TAGTAGGGTGTTGCCGTGGT+AGG - chr4_3:54719071-54719090 None:intergenic 55.0%
!! GCTATAGTAGGGTGTTGCCG+TGG - chr4_3:54719075-54719094 None:intergenic 55.0%
CCTCGTGAGCTTAGCACAGT+TGG - chr4_3:54719290-54719309 None:intergenic 55.0%
CCAACTGTGCTAAGCTCACG+AGG + chr4_3:54719287-54719306 Msa0648270:intron 55.0%
! AGGGGTTAGATAGGCTGGCT+TGG - chr4_3:54719606-54719625 None:intergenic 55.0%
GTCCAATTTGATCGGGCCAG+TGG + chr4_3:54720620-54720639 Msa0648270:CDS 55.0%
GCCAGTGGAACCTATGGCTT+TGG + chr4_3:54720635-54720654 Msa0648270:CDS 55.0%
GCCAAAGCCATAGGTTCCAC+TGG - chr4_3:54720639-54720658 None:intergenic 55.0%
AACCATTGCCCTTGGGGCAT+TGG + chr4_3:54721834-54721853 Msa0648270:intron 55.0%
AACCAATGCCCCAAGGGCAA+TGG - chr4_3:54721839-54721858 None:intergenic 55.0%
CTCCGGAATACCCATGTCTC+CGG + chr4_3:54722483-54722502 Msa0648270:intron 55.0%
CGTTGCAGATCCGGAGACAT+GGG - chr4_3:54722496-54722515 None:intergenic 55.0%
ACGTTGCAGATCCGGAGACA+TGG - chr4_3:54722497-54722516 None:intergenic 55.0%
!! CACCCCTAGTTGGTGGATGA+AGG + chr4_3:54722762-54722781 Msa0648270:intron 55.0%
CGGGAATTAGGACCCGAACC+AGG + chr4_3:54716557-54716576 Msa0648270:five_prime_UTR 60.0%
! TCGAGGAGCACGTGAGCATG+TGG + chr4_3:54716925-54716944 Msa0648270:five_prime_UTR 60.0%
! CGAGGAGCACGTGAGCATGT+GGG + chr4_3:54716926-54716945 Msa0648270:five_prime_UTR 60.0%
GATCGGGCCAGTGGAACCTA+TGG + chr4_3:54720629-54720648 Msa0648270:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 54716318 54724055 54716318 ID=Msa0648270;Name=Msa0648270
chr4_3 mRNA 54716318 54724055 54716318 ID=Msa0648270-mRNA-1;Parent=Msa0648270;Name=Msa0648270-mRNA-1;_AED=0.30;_eAED=0.30;_QI=1813|1|1|1|0.8|0.66|6|295|471
chr4_3 exon 54716318 54718313 54716318 ID=Msa0648270-mRNA-1:exon:13870;Parent=Msa0648270-mRNA-1
chr4_3 exon 54718411 54718983 54718411 ID=Msa0648270-mRNA-1:exon:13871;Parent=Msa0648270-mRNA-1
chr4_3 exon 54719382 54719735 54719382 ID=Msa0648270-mRNA-1:exon:13872;Parent=Msa0648270-mRNA-1
chr4_3 exon 54720570 54720707 54720570 ID=Msa0648270-mRNA-1:exon:13873;Parent=Msa0648270-mRNA-1
chr4_3 exon 54723551 54723861 54723551 ID=Msa0648270-mRNA-1:exon:13874;Parent=Msa0648270-mRNA-1
chr4_3 exon 54723904 54724055 54723904 ID=Msa0648270-mRNA-1:exon:13875;Parent=Msa0648270-mRNA-1
chr4_3 five_prime_UTR 54716318 54718130 54716318 ID=Msa0648270-mRNA-1:five_prime_utr;Parent=Msa0648270-mRNA-1
chr4_3 CDS 54718131 54718313 54718131 ID=Msa0648270-mRNA-1:cds;Parent=Msa0648270-mRNA-1
chr4_3 CDS 54718411 54718983 54718411 ID=Msa0648270-mRNA-1:cds;Parent=Msa0648270-mRNA-1
chr4_3 CDS 54719382 54719735 54719382 ID=Msa0648270-mRNA-1:cds;Parent=Msa0648270-mRNA-1
chr4_3 CDS 54720570 54720707 54720570 ID=Msa0648270-mRNA-1:cds;Parent=Msa0648270-mRNA-1
chr4_3 CDS 54723551 54723718 54723551 ID=Msa0648270-mRNA-1:cds;Parent=Msa0648270-mRNA-1
chr4_3 three_prime_UTR 54723719 54723861 54723719 ID=Msa0648270-mRNA-1:three_prime_utr;Parent=Msa0648270-mRNA-1
chr4_3 three_prime_UTR 54723904 54724055 54723904 ID=Msa0648270-mRNA-1:three_prime_utr;Parent=Msa0648270-mRNA-1
Gene Sequence

>Msa0648270

ATGGACAACTTTGAAGATGTAACTGAGCCAGTAAGTCCAAGTGGACAATACTTCAACACCCCTCCCCTATGTTCATATGTTTTTGGATTTTTGGAATTAGAAATTCCAATTGATGACTCTCAAGCTATGTATTTGATCCAACATGTGTTCTTACCTATCAATCCACGCTTCTCCTCCATAATAGTGAGAGATAAAGATGGAAATATGAAATGGAAAAAAGTAGAGGTAAATCCAAAAGATCATTTTAAGGTTCCAATGTTCCCCAAAAATGAGTCAGTTGAATTCTATGATAAAGATTTTGATGATTATGTGTCAAAGATATTAATAGAAAGGACACCAAAAGACAAACCCCTTTGGGAAATCCATGTTATCAAGTATCCAACAAGCAATGCTGCTTACACCATAATATTCAAACTTCATCATGCACTTGGTGATGGTTACTCTCTCATGGGTGCTCTTCTTTCTTGTCTTCATAGAGCTGATGATCCTTCTCTTCCTTTGTCTTTTCCTAACCGCAAATCATCACAATTGTTAACTCCTAAGAGAGGCTTTTTCAAGTGGTTCCCTTCAACCATATTCTCCCTTTTCAATTCAATCTCTGATTTTGGATGGAGTATATTGAAAAGTTCAATAATTGAAGATGATAAATCACCTATATGGAATGGTGAGGAAGGTTCAGAGTTTCTACCTTGTGCACTATCAAACCTATCATTCTCTCTCGATGAAATCATAACAATCAAGTCTAAGCTTGGAGTGACAATAAATGATGTGATTACTGGGGTAATTTTCTATGGTATTAGGCTATATATGCAAGAGATTGATAATAAGGCAAGAATGTCAAATTCAACAGGATTGGTGTTGCTAAGTACCAGGAACATTGGAAGTTACCAATCAATCCAAGACATGACCAAGGCTGATTCAAAATCTCCTTGGGGGAATCATATTTCTTTCTTACATATACCAATCCCAAAGTTAAGCCAAGCCAGCCTATCTAACCCCTTAGATTTTGTTTGGAAAGCACAAAAAATAATCAAGAGGAAGAGAAGTACTTTCACTGTTTTTCTCACTGAATGGCTTTTAGATATGCAGCTGAAATTAAGAGGACATGAGGCAGTTGCTAAACATCTATATGGTACATTGAGAAACTCAAGTGTTGTCATGTCCAATTTGATCGGGCCAGTGGAACCTATGGCTTTGGCAAACCATCCTGTGAAAGGCTTGTATTTTATAATGTCTGGTGCACCTGAGAGTATAGATATTGCAGTTATGAGCTATGCAAGAATATTAAGAATTACTTTGAAAACACAGAAAGACTTAATTGATGAACAGAAGTTCAAGTTGTGCATGGCAAGAGCCTTTGAAATCATATCCAAAGCAGCATCAATGGAGATTCCCAACAAAAAAAAGATGAAATGA
Protein sequence

>Msa0648270

MDNFEDVTEPVSPSGQYFNTPPLCSYVFGFLELEIPIDDSQAMYLIQHVFLPINPRFSSIIVRDKDGNMKWKKVEVNPKDHFKVPMFPKNESVEFYDKDFDDYVSKILIERTPKDKPLWEIHVIKYPTSNAAYTIIFKLHHALGDGYSLMGALLSCLHRADDPSLPLSFPNRKSSQLLTPKRGFFKWFPSTIFSLFNSISDFGWSILKSSIIEDDKSPIWNGEEGSEFLPCALSNLSFSLDEIITIKSKLGVTINDVITGVIFYGIRLYMQEIDNKARMSNSTGLVLLSTRNIGSYQSIQDMTKADSKSPWGNHISFLHIPIPKLSQASLSNPLDFVWKAQKIIKRKRSTFTVFLTEWLLDMQLKLRGHEAVAKHLYGTLRNSSVVMSNLIGPVEPMALANHPVKGLYFIMSGAPESIDIAVMSYARILRITLKTQKDLIDEQKFKLCMARAFEIISKAASMEIPNKKKMK*