AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0514280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0514280 MtrunA17_Chr3g0122441 96.875 192 6 0 1 192 1 192 9.26e-136 377
Msa0514280 MtrunA17_Chr8g0356191 32.450 151 90 5 9 151 12 158 5.70e-16 72.4
Msa0514280 MtrunA17_Chr7g0260061 28.070 114 79 2 1 114 1 111 3.87e-12 62.0
Msa0514280 MtrunA17_Chr5g0395001 28.125 192 113 7 1 191 1 168 3.97e-12 61.6
Msa0514280 MtrunA17_Chr1g0205181 35.714 84 49 1 30 113 26 104 6.24e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0514280 AT1G27950.1 49.020 153 71 3 31 183 34 179 1.84e-42 141
Msa0514280 AT2G44290.1 34.395 157 91 7 10 161 13 162 4.99e-18 78.6
Msa0514280 AT2G44300.1 34.615 130 72 6 42 164 45 168 1.78e-14 68.9
Msa0514280 AT1G55260.2 26.829 164 100 6 1 159 44 192 6.12e-13 65.5
Msa0514280 AT1G55260.1 26.829 164 103 6 1 159 44 195 9.94e-13 64.7

Find 88 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACCCATGCTCTTGCTTTC+AGG 0.112193 3_4:-64965573 None:intergenic
TGTAATGGTTTCTCGAATTA+TGG 0.138518 3_4:+64969959 Msa0514280:three_prime_UTR
TTTCCAGTTTCCCATTAATA+TGG 0.193004 3_4:+64970032 Msa0514280:three_prime_UTR
ACAAACTACTCCCATATTAA+TGG 0.208905 3_4:-64970043 None:intergenic
GCATCACAGCATTCCTTCTT+TGG 0.234849 3_4:-64965480 None:intergenic
AGGAAGTAGTAAAGTATTAT+TGG 0.255709 3_4:+64969878 Msa0514280:three_prime_UTR
CCTCAATCTCACCATTAAAT+AGG 0.265782 3_4:+64965108 Msa0514280:five_prime_UTR
TGGTCTCGTTTCCTATTTAA+TGG 0.277493 3_4:-64965119 None:intergenic
CTCCCATATTAATGGGAAAC+TGG 0.300413 3_4:-64970035 None:intergenic
TCACAATAAAGGCAAATTAA+AGG 0.315377 3_4:-64970000 None:intergenic
AAGCAAGAGCATGGGTATTC+AGG 0.320822 3_4:+64965578 Msa0514280:CDS
CCATGTCTGGACTTTGCAAC+TGG 0.330521 3_4:+64965444 Msa0514280:CDS
GTTTATGTGTCTGTGTGTTT+TGG 0.332428 3_4:+64965347 Msa0514280:CDS
TAAATATATGGTTGTAAGTA+AGG 0.339209 3_4:-64965238 None:intergenic
CTCTAATGGAGCTGAAGATT+TGG 0.343257 3_4:+64965386 Msa0514280:CDS
GTAGTTTGTTGGTGATAATT+CGG 0.347528 3_4:+64970057 Msa0514280:three_prime_UTR
AAAGTACTGTTATAAATATA+TGG 0.347676 3_4:-64965250 None:intergenic
CAAACTACTCCCATATTAAT+GGG 0.361908 3_4:-64970042 None:intergenic
TAGCAGAAGCTGTGAATTGT+AGG 0.363437 3_4:-64965283 None:intergenic
CTTGCCGAGGTCGGAGTTGT+AGG 0.376495 3_4:-64969689 None:intergenic
GTAATGGTTTCTCGAATTAT+GGG 0.376913 3_4:+64969960 Msa0514280:three_prime_UTR
AAGTAATAAGTTCACAATAA+AGG 0.379954 3_4:-64970011 None:intergenic
GATGATGGATCTCTGTATTA+AGG 0.380306 3_4:-64965079 None:intergenic
CTCATCATAGGTGGCTCTAA+TGG 0.381692 3_4:+64965372 Msa0514280:CDS
TTGTCTCTGCTGCTGTGTAA+TGG 0.386544 3_4:+64969944 Msa0514280:three_prime_UTR
TGTTGATCATGACAGGTCTA+AGG 0.387679 3_4:-64969730 None:intergenic
TACCCATGCTCTTGCTTTCA+GGG 0.394358 3_4:-64965572 None:intergenic
CACCTAACCACAGAGAAATA+TGG 0.399941 3_4:+64969853 Msa0514280:three_prime_UTR
TCCTCTTTGTCTTGGAAGAA+TGG 0.400860 3_4:+64970165 Msa0514280:three_prime_UTR
ACATAAACATTTGATGTTGT+TGG 0.404273 3_4:-64965332 None:intergenic
TTCCAGTTTCCCATTAATAT+GGG 0.410497 3_4:+64970033 Msa0514280:three_prime_UTR
TTAATATGGGAGTAGTTTGT+TGG 0.412122 3_4:+64970046 Msa0514280:three_prime_UTR
CAACGTGATAACGGTGACTT+TGG 0.415623 3_4:+64969751 Msa0514280:CDS
AAGGAGAGAATAGGAAGTAC+AGG 0.419692 3_4:-64965175 None:intergenic
CCTATTTAATGGTGAGATTG+AGG 0.420416 3_4:-64965108 None:intergenic
GTTCTTGCTGCAGTACCTGC+TGG 0.431862 3_4:+64969779 Msa0514280:CDS
TATCATTCAACAGACTCATA+AGG 0.436377 3_4:+64965545 Msa0514280:CDS
AACCATATTTCTCTGTGGTT+AGG 0.446523 3_4:-64969855 None:intergenic
TTATCAGCATTTATACATGA+TGG 0.456328 3_4:+64969804 Msa0514280:CDS
ATCATTCAACAGACTCATAA+GGG 0.476714 3_4:+64965546 Msa0514280:CDS
GGTAGGAAGAAGGAGAGAAT+AGG 0.479018 3_4:-64965184 None:intergenic
CAGCATTCCTTCTTTGGTGT+AGG 0.481891 3_4:-64965474 None:intergenic
ATCACGTTGTTGATCATGAC+AGG 0.490311 3_4:-64969737 None:intergenic
AGCATTTATACATGATGGGT+TGG 0.505960 3_4:+64969809 Msa0514280:exon
TATCAGCATTTATACATGAT+GGG 0.509940 3_4:+64969805 Msa0514280:exon
AGTAGTAAAGTATTATTGGT+TGG 0.514371 3_4:+64969882 Msa0514280:three_prime_UTR
TAGGAAGTACAGGTGAGGAA+AGG 0.518986 3_4:-64965165 None:intergenic
AGAAGAAGAAGGTAGGAAGA+AGG 0.526729 3_4:-64965194 None:intergenic
GCAAATTAAAGGCAACATCA+TGG 0.529197 3_4:-64969989 None:intergenic
CCAGTTGCAAAGTCCAGACA+TGG 0.534963 3_4:-64965444 None:intergenic
CATGATCAACAACGTGATAA+CGG 0.539145 3_4:+64969742 Msa0514280:CDS
TCCATTCTTCCAAGACAAAG+AGG 0.540825 3_4:-64970166 None:intergenic
GGCTTCAAAGTGTGGATCAG+TGG 0.542878 3_4:+64965407 Msa0514280:CDS
GAAGATTTGGCTTCAAAGTG+TGG 0.543294 3_4:+64965399 Msa0514280:CDS
CATGTCTGGACTTTGCAACT+GGG 0.544788 3_4:+64965445 Msa0514280:CDS
GAAAGCACCTACACCAAAGA+AGG 0.545842 3_4:+64965467 Msa0514280:CDS
GTAGTTGCAGCAGCTGATGA+AGG 0.549439 3_4:-64969659 None:intergenic
CCACCTGTGCTTGCCGAGGT+CGG 0.550705 3_4:-64969698 None:intergenic
ACTGGGACAGTCGGAAATGT+TGG 0.550714 3_4:-64965646 None:intergenic
AACCACAGAGAAATATGGTT+AGG 0.552832 3_4:+64969858 Msa0514280:three_prime_UTR
ATGATATAGCACAAACACTC+TGG 0.553006 3_4:-64965528 None:intergenic
AACTCCTACAACTCCGACCT+CGG 0.556736 3_4:+64969685 Msa0514280:CDS
ACTCCGACCTCGGCAAGCAC+AGG 0.560509 3_4:+64969695 Msa0514280:CDS
ATCAAGTCTCAAGAAGAAGA+AGG 0.562459 3_4:-64965205 None:intergenic
ATTAAACTTACTGGGACAGT+CGG 0.571110 3_4:-64965655 None:intergenic
TAGCCCTGAAAGCAAGAGCA+TGG 0.574374 3_4:+64965569 Msa0514280:CDS
TGATGCAGCTAACAGTATCA+AGG 0.574408 3_4:+64965497 Msa0514280:CDS
CCGACCTCGGCAAGCACAGG+TGG 0.579084 3_4:+64969698 Msa0514280:CDS
AGATTGAGGAGTGATGATGA+TGG 0.580805 3_4:-64965094 None:intergenic
CCGTTGACGTGACAAACAGT+AGG 0.581377 3_4:-64965621 None:intergenic
GCAGCAGCTGATGAAGGAGT+AGG 0.585517 3_4:-64969653 None:intergenic
AGTCTCAAGAAGAAGAAGGT+AGG 0.587932 3_4:-64965201 None:intergenic
GAGAATAGGAAGTACAGGTG+AGG 0.596929 3_4:-64965170 None:intergenic
TTTAAAGATTGCAGCGTCGG+GGG 0.597687 3_4:-64969612 None:intergenic
AGCTAACAGTATCAAGGCAA+CGG 0.604523 3_4:+64965503 Msa0514280:CDS
CTCTGTATTAAGGCACTCCA+CGG 0.608725 3_4:-64965069 None:intergenic
TAAATGCTGATAAATCCAGC+AGG 0.610193 3_4:-64969794 None:intergenic
GGTATGGTGACAGAGCTGCT+TGG 0.615501 3_4:+64969575 Msa0514280:intron
TTCCTAACCATATTTCTCTG+TGG 0.618262 3_4:-64969860 None:intergenic
ATAAGGACGTTTAGCTACCG+TGG 0.626164 3_4:+64965052 None:intergenic
AGCCCTGAAAGCAAGAGCAT+GGG 0.629636 3_4:+64965570 Msa0514280:CDS
GATCATGACAGGTCTAAGGT+TGG 0.632709 3_4:-64969726 None:intergenic
TGAACCACCTGTGCTTGCCG+AGG 0.642075 3_4:-64969702 None:intergenic
GGTCGGAGTTGTAGGAGTTG+CGG 0.642214 3_4:-64969681 None:intergenic
CGTTGACGTGACAAACAGTA+GGG 0.644084 3_4:-64965620 None:intergenic
AGGTACTGCAGCAAGAACAA+TGG 0.653525 3_4:-64969774 None:intergenic
CCTACTGTTTGTCACGTCAA+CGG 0.678772 3_4:+64965621 Msa0514280:CDS
GATGAGTAAATGCAATAGTG+TGG 0.690328 3_4:-64965139 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATACTATATAAAAATGT+TGG - chr3_4:64968515-64968534 None:intergenic 10.0%
!! TTTATATAGTATATAAAACA+AGG + chr3_4:64968520-64968539 Msa0514280:intron 10.0%
!! TTATATAGTATATAAAACAA+GGG + chr3_4:64968521-64968540 Msa0514280:intron 10.0%
!!! ATTTATTGAGATTTTTTTTA+TGG + chr3_4:64970142-64970161 Msa0514280:three_prime_UTR 10.0%
!!! AAAGTACTGTTATAAATATA+TGG - chr3_4:64965253-64965272 None:intergenic 15.0%
!! ATATATGACATTAATTTATC+AGG - chr3_4:64965733-64965752 None:intergenic 15.0%
!!! TTTTTTTTGTTACACAATAA+TGG + chr3_4:64965824-64965843 Msa0514280:intron 15.0%
!!! CTTATTATATTTGATTTTTC+CGG + chr3_4:64966251-64966270 Msa0514280:intron 15.0%
!! ATTTAATAAAATAAGGTTAC+TGG - chr3_4:64966363-64966382 None:intergenic 15.0%
!! AAAAATAAATGTATTTGAAC+TGG - chr3_4:64966486-64966505 None:intergenic 15.0%
!! TATACATTAGTTAAAAAGTA+TGG + chr3_4:64967345-64967364 Msa0514280:intron 15.0%
!!! TAGAGTTTTCTAATAAATTA+TGG + chr3_4:64967941-64967960 Msa0514280:intron 15.0%
!!! AGAGTTTTCTAATAAATTAT+GGG + chr3_4:64967942-64967961 Msa0514280:intron 15.0%
!!! GAAAAGATAATTTTTAACAT+AGG + chr3_4:64968615-64968634 Msa0514280:intron 15.0%
!!! AATTTTTAACATAGGTTTTA+AGG + chr3_4:64968623-64968642 Msa0514280:intron 15.0%
!!! ATTAGTGTATAATCATTTTT+TGG + chr3_4:64968953-64968972 Msa0514280:intron 15.0%
!! AAAGAATCAAAGTATATATT+GGG - chr3_4:64969063-64969082 None:intergenic 15.0%
!! CATATATTTAACATAATGAA+AGG - chr3_4:64969172-64969191 None:intergenic 15.0%
!!! TTTGGGTTAATTTAAAAAAA+AGG + chr3_4:64969242-64969261 Msa0514280:intron 15.0%
!! TTGGGTTAATTTAAAAAAAA+GGG + chr3_4:64969243-64969262 Msa0514280:intron 15.0%
!!! AAAACGCAATATTTTTTTTT+AGG - chr3_4:64969447-64969466 None:intergenic 15.0%
!! ACATATAATAACATGAATAT+TGG + chr3_4:64969554-64969573 Msa0514280:intron 15.0%
!! TAAATATATGGTTGTAAGTA+AGG - chr3_4:64965241-64965260 None:intergenic 20.0%
!! AAGGAAAAATTAAACTTACT+GGG - chr3_4:64965666-64965685 None:intergenic 20.0%
!! AAAGGAAAAATTAAACTTAC+TGG - chr3_4:64965667-64965686 None:intergenic 20.0%
!! TAGCAATTAACGATAAAAAA+AGG - chr3_4:64965685-64965704 None:intergenic 20.0%
!! ATGCATGATATTATACATAT+TGG + chr3_4:64965751-64965770 Msa0514280:intron 20.0%
!! TGCATGATATTATACATATT+GGG + chr3_4:64965752-64965771 Msa0514280:intron 20.0%
!! CTATTACATAAAACTATGAT+AGG + chr3_4:64965909-64965928 Msa0514280:intron 20.0%
!!! ATATCTAATTATCTCTTTTG+TGG + chr3_4:64966381-64966400 Msa0514280:intron 20.0%
!!! ACATTTATTTTTATTGACCA+AGG + chr3_4:64966494-64966513 Msa0514280:intron 20.0%
!! TTTGTTTATAAGAAAAACCT+TGG - chr3_4:64966514-64966533 None:intergenic 20.0%
!!! TTTACATTCCACATTTTATT+TGG + chr3_4:64966651-64966670 Msa0514280:intron 20.0%
!!! TTTTTTGACCAAATAAAATG+TGG - chr3_4:64966662-64966681 None:intergenic 20.0%
!! AAAACTTATGTTAAAGTTTG+TGG + chr3_4:64967077-64967096 Msa0514280:intron 20.0%
!!! TGTAATTTTAGAAACATGAT+AGG + chr3_4:64967870-64967889 Msa0514280:intron 20.0%
!! AAATTGCGCAAAATAAATTA+AGG + chr3_4:64967904-64967923 Msa0514280:intron 20.0%
!! ATTTATTAGAAAACTCTAAC+CGG - chr3_4:64967939-64967958 None:intergenic 20.0%
!!! AAGACATAGTTTCTTTTTTT+GGG - chr3_4:64968006-64968025 None:intergenic 20.0%
!! GATTTCTGACATATAATTTA+TGG - chr3_4:64968138-64968157 None:intergenic 20.0%
!! TTAATGAGATCATTAAGTAA+AGG - chr3_4:64968258-64968277 None:intergenic 20.0%
!!! ATGGAGTATTAATTTTACAT+TGG + chr3_4:64968363-64968382 Msa0514280:intron 20.0%
!! TTAAGATGATAAAAGTTTGT+GGG - chr3_4:64968934-64968953 None:intergenic 20.0%
!! ATTAAGATGATAAAAGTTTG+TGG - chr3_4:64968935-64968954 None:intergenic 20.0%
!! GAAAGAATCAAAGTATATAT+TGG - chr3_4:64969064-64969083 None:intergenic 20.0%
!! AATATTCCATCAATTATTCT+TGG + chr3_4:64969219-64969238 Msa0514280:intron 20.0%
!!! CTATGATAAACTTCTAATTT+TGG - chr3_4:64969308-64969327 None:intergenic 20.0%
!! TAATAACATGAATATTGGTA+TGG + chr3_4:64969559-64969578 Msa0514280:intron 20.0%
!! AAGTAATAAGTTCACAATAA+AGG - chr3_4:64970014-64970033 None:intergenic 20.0%
!!! ATTCGGATTTAATTTCTTTT+TGG + chr3_4:64970074-64970093 Msa0514280:three_prime_UTR 20.0%
! ACATAAACATTTGATGTTGT+TGG - chr3_4:64965335-64965354 None:intergenic 25.0%
! ACAATAATGGTTCCAATTTA+CGG + chr3_4:64965837-64965856 Msa0514280:intron 25.0%
! TAGACTTATATCACAATTTC+AGG + chr3_4:64965962-64965981 Msa0514280:intron 25.0%
! GTTTATTGCATATTTGATGT+CGG + chr3_4:64966099-64966118 Msa0514280:intron 25.0%
!! TTTTAACAAACCGTAATGTT+TGG + chr3_4:64966176-64966195 Msa0514280:intron 25.0%
! TTTAACAAACCGTAATGTTT+GGG + chr3_4:64966177-64966196 Msa0514280:intron 25.0%
!! CTCTTTTAAATAAAATCCGA+GGG - chr3_4:64966437-64966456 None:intergenic 25.0%
!! TCTCTTTTAAATAAAATCCG+AGG - chr3_4:64966438-64966457 None:intergenic 25.0%
!! GTATAGGAGTATAAACATAA+GGG - chr3_4:64966577-64966596 None:intergenic 25.0%
!! TGTATAGGAGTATAAACATA+AGG - chr3_4:64966578-64966597 None:intergenic 25.0%
!!! ATTGGACATGTATTTTGAAA+CGG + chr3_4:64967404-64967423 Msa0514280:intron 25.0%
!! ACTACAAATGACACTATTTT+TGG + chr3_4:64967578-64967597 Msa0514280:intron 25.0%
!!! TTGGTAGATATTTTTGTTGT+TGG + chr3_4:64967597-64967616 Msa0514280:intron 25.0%
! TTGCGATAACTATTATAGAT+GGG + chr3_4:64967622-64967641 Msa0514280:intron 25.0%
! CCTAGAAAAGAAAAGAAAAT+TGG - chr3_4:64967814-64967833 None:intergenic 25.0%
!! CCAATTTTCTTTTCTTTTCT+AGG + chr3_4:64967811-64967830 Msa0514280:intron 25.0%
!!! CAAGACATAGTTTCTTTTTT+TGG - chr3_4:64968007-64968026 None:intergenic 25.0%
!! TTTTTGCATTGGAAATTGTA+CGG - chr3_4:64968063-64968082 None:intergenic 25.0%
! ATTGTTTAAGCATCTAAAAG+TGG - chr3_4:64968089-64968108 None:intergenic 25.0%
!! AACATTTAAGACATTGTTGT+TGG - chr3_4:64968216-64968235 None:intergenic 25.0%
!! CTAATATATGCTCTAAATGT+TGG - chr3_4:64968486-64968505 None:intergenic 25.0%
!!! AAAAGCTAACTTGTGTTTTT+AGG + chr3_4:64968544-64968563 Msa0514280:intron 25.0%
!!! AAAGCTAACTTGTGTTTTTA+GGG + chr3_4:64968545-64968564 Msa0514280:intron 25.0%
! TAAGATGATAAAAGTTTGTG+GGG - chr3_4:64968933-64968952 None:intergenic 25.0%
!!! TCATGGATGATAGTTTTAAA+AGG - chr3_4:64969508-64969527 None:intergenic 25.0%
!! CAATCTTTAAAAATGCTTCA+AGG + chr3_4:64969624-64969643 Msa0514280:CDS 25.0%
! TTATCAGCATTTATACATGA+TGG + chr3_4:64969804-64969823 Msa0514280:CDS 25.0%
! TATCAGCATTTATACATGAT+GGG + chr3_4:64969805-64969824 Msa0514280:exon 25.0%
!! AGGAAGTAGTAAAGTATTAT+TGG + chr3_4:64969878-64969897 Msa0514280:three_prime_UTR 25.0%
!! AGTAGTAAAGTATTATTGGT+TGG + chr3_4:64969882-64969901 Msa0514280:three_prime_UTR 25.0%
! TCACAATAAAGGCAAATTAA+AGG - chr3_4:64970003-64970022 None:intergenic 25.0%
TATCATTCAACAGACTCATA+AGG + chr3_4:64965545-64965564 Msa0514280:CDS 30.0%
ATCATTCAACAGACTCATAA+GGG + chr3_4:64965546-64965565 Msa0514280:CDS 30.0%
ATATGCATGAAACCGTAAAT+TGG - chr3_4:64965852-64965871 None:intergenic 30.0%
!! CTATCATATACGTTTGTTGT+CGG - chr3_4:64965998-64966017 None:intergenic 30.0%
TTGTTCACTAAAATTGACAC+CGG - chr3_4:64966273-64966292 None:intergenic 30.0%
! TCTAATTATCTCTTTTGTGG+TGG + chr3_4:64966384-64966403 Msa0514280:intron 30.0%
! TTACAAAAGTACAGTTTGTC+CGG - chr3_4:64966617-64966636 None:intergenic 30.0%
! TTTCCCTTTCTGACATTTTT+AGG + chr3_4:64966738-64966757 Msa0514280:intron 30.0%
!! CTTGGACATGTATTTTGAAA+CGG - chr3_4:64967183-64967202 None:intergenic 30.0%
ATAGTGCACATTGCAAAAAT+TGG + chr3_4:64967386-64967405 Msa0514280:intron 30.0%
GTTGCGATAACTATTATAGA+TGG + chr3_4:64967621-64967640 Msa0514280:intron 30.0%
TGCGATAACTATTATAGATG+GGG + chr3_4:64967623-64967642 Msa0514280:intron 30.0%
AATGACCTGTCATCTATATT+GGG + chr3_4:64967666-64967685 Msa0514280:intron 30.0%
ATTGATATGCGAACTAATGA+AGG - chr3_4:64967778-64967797 None:intergenic 30.0%
! AAAAGTGGCAATTTTTGCAT+TGG - chr3_4:64968074-64968093 None:intergenic 30.0%
GTCAGAAATCTTATGTATAG+AGG + chr3_4:64968148-64968167 Msa0514280:intron 30.0%
TCTTATGTATAGAGGAACAA+AGG + chr3_4:64968156-64968175 Msa0514280:intron 30.0%
ATTCTCTAACATGCATTCTT+AGG - chr3_4:64968339-64968358 None:intergenic 30.0%
TGCATGTTAGAGAATTCAAA+TGG + chr3_4:64968344-64968363 Msa0514280:intron 30.0%
!!! GTGTGAGTGATTTGTTTTAT+GGG - chr3_4:64968711-64968730 None:intergenic 30.0%
!!! AGTGTGAGTGATTTGTTTTA+TGG - chr3_4:64968712-64968731 None:intergenic 30.0%
AACAAATCACTCACACTAAA+TGG + chr3_4:64968715-64968734 Msa0514280:intron 30.0%
TATAAATACCCAACTCATTC+TGG + chr3_4:64969146-64969165 Msa0514280:intron 30.0%
TCCATCAATTATTCTTGGTT+TGG + chr3_4:64969224-64969243 Msa0514280:intron 30.0%
CCATCAATTATTCTTGGTTT+GGG + chr3_4:64969225-64969244 Msa0514280:intron 30.0%
! TCTTGTTATCTTGTGTCTTA+AGG + chr3_4:64969266-64969285 Msa0514280:intron 30.0%
! CTTGTTATCTTGTGTCTTAA+GGG + chr3_4:64969267-64969286 Msa0514280:intron 30.0%
TGTGATTAGCAACTTTATCA+TGG - chr3_4:64969525-64969544 None:intergenic 30.0%
!! ATTTTTAAAGATTGCAGCGT+CGG - chr3_4:64969618-64969637 None:intergenic 30.0%
TGTAATGGTTTCTCGAATTA+TGG + chr3_4:64969959-64969978 Msa0514280:three_prime_UTR 30.0%
GTAATGGTTTCTCGAATTAT+GGG + chr3_4:64969960-64969979 Msa0514280:three_prime_UTR 30.0%
TTTCCAGTTTCCCATTAATA+TGG + chr3_4:64970032-64970051 Msa0514280:three_prime_UTR 30.0%
TTCCAGTTTCCCATTAATAT+GGG + chr3_4:64970033-64970052 Msa0514280:three_prime_UTR 30.0%
CAAACTACTCCCATATTAAT+GGG - chr3_4:64970045-64970064 None:intergenic 30.0%
ACAAACTACTCCCATATTAA+TGG - chr3_4:64970046-64970065 None:intergenic 30.0%
! TTAATATGGGAGTAGTTTGT+TGG + chr3_4:64970046-64970065 Msa0514280:three_prime_UTR 30.0%
!! GTAGTTTGTTGGTGATAATT+CGG + chr3_4:64970057-64970076 Msa0514280:three_prime_UTR 30.0%
!! GATGATGGATCTCTGTATTA+AGG - chr3_4:64965082-64965101 None:intergenic 35.0%
CCTATTTAATGGTGAGATTG+AGG - chr3_4:64965111-64965130 None:intergenic 35.0%
CCTCAATCTCACCATTAAAT+AGG + chr3_4:64965108-64965127 Msa0514280:five_prime_UTR 35.0%
TGGTCTCGTTTCCTATTTAA+TGG - chr3_4:64965122-64965141 None:intergenic 35.0%
GATGAGTAAATGCAATAGTG+TGG - chr3_4:64965142-64965161 None:intergenic 35.0%
ATCAAGTCTCAAGAAGAAGA+AGG - chr3_4:64965208-64965227 None:intergenic 35.0%
! GTTTATGTGTCTGTGTGTTT+TGG + chr3_4:64965347-64965366 Msa0514280:CDS 35.0%
TCAAAAAGTGATTCCATGTC+TGG + chr3_4:64965431-64965450 Msa0514280:CDS 35.0%
ATGATATAGCACAAACACTC+TGG - chr3_4:64965531-64965550 None:intergenic 35.0%
ATTAAACTTACTGGGACAGT+CGG - chr3_4:64965658-64965677 None:intergenic 35.0%
! TGATCGACTTAGTTAGAGTA+CGG - chr3_4:64966022-64966041 None:intergenic 35.0%
ATTATCTCTAAACACTCCCT+CGG + chr3_4:64966418-64966437 Msa0514280:intron 35.0%
ATAACTCTATGCGTGTGTAT+AGG - chr3_4:64966593-64966612 None:intergenic 35.0%
! TACAAAAGTACAGTTTGTCC+GGG - chr3_4:64966616-64966635 None:intergenic 35.0%
AAATGTCAGAAAGGGAAAAG+AGG - chr3_4:64966736-64966755 None:intergenic 35.0%
AGGCCTAAAAATGTCAGAAA+GGG - chr3_4:64966744-64966763 None:intergenic 35.0%
! GTTTCTGCAATTTTCACAAG+AGG - chr3_4:64966764-64966783 None:intergenic 35.0%
TGTTCTTAATCATCGACAAG+AGG - chr3_4:64966791-64966810 None:intergenic 35.0%
!!! GACATGTATTTTGAAACGGA+GGG - chr3_4:64967408-64967427 None:intergenic 35.0%
!!! GACATGTATTTTGAAACGGA+GGG + chr3_4:64967408-64967427 Msa0514280:intron 35.0%
GAATGACCTGTCATCTATAT+TGG + chr3_4:64967665-64967684 Msa0514280:intron 35.0%
ATTTAACCTGTCTAGATGCA+AGG - chr3_4:64967731-64967750 None:intergenic 35.0%
TTGCATCTAGACAGGTTAAA+TGG + chr3_4:64967730-64967749 Msa0514280:intron 35.0%
TGCATCTAGACAGGTTAAAT+GGG + chr3_4:64967731-64967750 Msa0514280:intron 35.0%
TAAATTAAGGTCATGCTAGC+CGG + chr3_4:64967917-64967936 Msa0514280:intron 35.0%
TTCCTTAAACAATGCCCTTA+GGG - chr3_4:64967983-64968002 None:intergenic 35.0%
ATGCTTAAACAATGCCCTTA+GGG + chr3_4:64968096-64968115 Msa0514280:intron 35.0%
!!! ACTTAGACTAGCTTCTTTTC+AGG - chr3_4:64969086-64969105 None:intergenic 35.0%
CCCAAACCAAGAATAATTGA+TGG - chr3_4:64969228-64969247 None:intergenic 35.0%
AATATTAACATGTGCCCCAA+GGG - chr3_4:64969422-64969441 None:intergenic 35.0%
AAATATTAACATGTGCCCCA+AGG - chr3_4:64969423-64969442 None:intergenic 35.0%
!! TTTTTAAAGATTGCAGCGTC+GGG - chr3_4:64969617-64969636 None:intergenic 35.0%
CATGATCAACAACGTGATAA+CGG + chr3_4:64969742-64969761 Msa0514280:CDS 35.0%
TAAATGCTGATAAATCCAGC+AGG - chr3_4:64969797-64969816 None:intergenic 35.0%
!! AGCATTTATACATGATGGGT+TGG + chr3_4:64969809-64969828 Msa0514280:exon 35.0%
AACCATATTTCTCTGTGGTT+AGG - chr3_4:64969858-64969877 None:intergenic 35.0%
AACCACAGAGAAATATGGTT+AGG + chr3_4:64969858-64969877 Msa0514280:three_prime_UTR 35.0%
TTCCTAACCATATTTCTCTG+TGG - chr3_4:64969863-64969882 None:intergenic 35.0%
!! CTGCATATCTGTTTTTCTGT+AGG + chr3_4:64969918-64969937 Msa0514280:three_prime_UTR 35.0%
GCAAATTAAAGGCAACATCA+TGG - chr3_4:64969992-64970011 None:intergenic 35.0%
! TTTTATGGTCCTCTTTGTCT+TGG + chr3_4:64970157-64970176 Msa0514280:three_prime_UTR 35.0%
! AGATTGAGGAGTGATGATGA+TGG - chr3_4:64965097-64965116 None:intergenic 40.0%
! AAGGAGAGAATAGGAAGTAC+AGG - chr3_4:64965178-64965197 None:intergenic 40.0%
AGAAGAAGAAGGTAGGAAGA+AGG - chr3_4:64965197-64965216 None:intergenic 40.0%
AGTCTCAAGAAGAAGAAGGT+AGG - chr3_4:64965204-64965223 None:intergenic 40.0%
TAGCAGAAGCTGTGAATTGT+AGG - chr3_4:64965286-64965305 None:intergenic 40.0%
!!! TGTGTTTTGGCTCTCATCAT+AGG + chr3_4:64965360-64965379 Msa0514280:CDS 40.0%
CTCTAATGGAGCTGAAGATT+TGG + chr3_4:64965386-64965405 Msa0514280:CDS 40.0%
! GAAGATTTGGCTTCAAAGTG+TGG + chr3_4:64965399-64965418 Msa0514280:CDS 40.0%
TGATGCAGCTAACAGTATCA+AGG + chr3_4:64965497-64965516 Msa0514280:CDS 40.0%
AGCTAACAGTATCAAGGCAA+CGG + chr3_4:64965503-64965522 Msa0514280:CDS 40.0%
TATTGTGAGAGAGGGAGAAT+AGG - chr3_4:64965791-64965810 None:intergenic 40.0%
TTCTCCCTCTCTCACAATAA+TGG + chr3_4:64965792-64965811 Msa0514280:intron 40.0%
GTGACCATTATTGTGAGAGA+GGG - chr3_4:64965799-64965818 None:intergenic 40.0%
TGTGACCATTATTGTGAGAG+AGG - chr3_4:64965800-64965819 None:intergenic 40.0%
! GATCGACTTAGTTAGAGTAC+GGG - chr3_4:64966021-64966040 None:intergenic 40.0%
CTACACAAGCCCAAACATTA+CGG - chr3_4:64966189-64966208 None:intergenic 40.0%
! ACATAAGGGAAGCTACGTTT+TGG - chr3_4:64966563-64966582 None:intergenic 40.0%
CAGAAAGGGAAAAGAGGATA+TGG - chr3_4:64966730-64966749 None:intergenic 40.0%
GAGGCCTAAAAATGTCAGAA+AGG - chr3_4:64966745-64966764 None:intergenic 40.0%
TTAATCATCGACAAGAGGCA+GGG - chr3_4:64966786-64966805 None:intergenic 40.0%
CCAACGCAAGAGAATATTGT+GGG - chr3_4:64967017-64967036 None:intergenic 40.0%
CCACAATATTCTCTTGCGTT+GGG + chr3_4:64967015-64967034 Msa0514280:intron 40.0%
!!! GGACATGTATTTTGAAACGG+AGG - chr3_4:64967407-64967426 None:intergenic 40.0%
CATATGTGAAGTGGTTGACT+TGG - chr3_4:64967201-64967220 None:intergenic 40.0%
GTGCATTTGCATATGTGAAG+TGG - chr3_4:64967210-64967229 None:intergenic 40.0%
!!! GGACATGTATTTTGAAACGG+AGG + chr3_4:64967407-64967426 Msa0514280:intron 40.0%
TGACAGGTCATTCAAGATTG+AGG - chr3_4:64967658-64967677 None:intergenic 40.0%
ACCTGTCATCTATATTGGGT+GGG + chr3_4:64967670-64967689 Msa0514280:intron 40.0%
ATGCGAACTAATGAAGGCAA+TGG - chr3_4:64967772-64967791 None:intergenic 40.0%
GTTCCTTAAACAATGCCCTT+AGG - chr3_4:64967984-64968003 None:intergenic 40.0%
GATGCTTAAACAATGCCCTT+AGG + chr3_4:64968095-64968114 Msa0514280:intron 40.0%
AATGCTAACAAGTGCCCTAA+GGG - chr3_4:64968113-64968132 None:intergenic 40.0%
AAATGCTAACAAGTGCCCTA+AGG - chr3_4:64968114-64968133 None:intergenic 40.0%
!!! CAGACTCAAGTTTTTTCACG+AGG + chr3_4:64968769-64968788 Msa0514280:intron 40.0%
! TCTTTCGAACGATCGTCTTT+TGG + chr3_4:64968840-64968859 Msa0514280:intron 40.0%
! CTTTCGAACGATCGTCTTTT+GGG + chr3_4:64968841-64968860 Msa0514280:intron 40.0%
ATGAAAGGCCAGAATGAGTT+GGG - chr3_4:64969157-64969176 None:intergenic 40.0%
AATGAAAGGCCAGAATGAGT+TGG - chr3_4:64969158-64969177 None:intergenic 40.0%
AGCAGCAGTAGTAGTATATG+TGG + chr3_4:64969193-64969212 Msa0514280:intron 40.0%
GCAGCAGTAGTAGTATATGT+GGG + chr3_4:64969194-64969213 Msa0514280:intron 40.0%
! TGTCTTAAGGGCACAAGTTA+AGG + chr3_4:64969279-64969298 Msa0514280:intron 40.0%
AATTCCTTAGCATATGCCCT+TGG + chr3_4:64969403-64969422 Msa0514280:intron 40.0%
ATTCCTTAGCATATGCCCTT+GGG + chr3_4:64969404-64969423 Msa0514280:intron 40.0%
!! TTTTAAAGATTGCAGCGTCG+GGG - chr3_4:64969616-64969635 None:intergenic 40.0%
TGTTGATCATGACAGGTCTA+AGG - chr3_4:64969733-64969752 None:intergenic 40.0%
ATCACGTTGTTGATCATGAC+AGG - chr3_4:64969740-64969759 None:intergenic 40.0%
CACCTAACCACAGAGAAATA+TGG + chr3_4:64969853-64969872 Msa0514280:three_prime_UTR 40.0%
CTCCCATATTAATGGGAAAC+TGG - chr3_4:64970038-64970057 None:intergenic 40.0%
TCCTCTTTGTCTTGGAAGAA+TGG + chr3_4:64970165-64970184 Msa0514280:three_prime_UTR 40.0%
TCCATTCTTCCAAGACAAAG+AGG - chr3_4:64970169-64970188 None:intergenic 40.0%
! CTCTGTATTAAGGCACTCCA+CGG - chr3_4:64965072-64965091 None:intergenic 45.0%
! TAGGAAGTACAGGTGAGGAA+AGG - chr3_4:64965168-64965187 None:intergenic 45.0%
! GAGAATAGGAAGTACAGGTG+AGG - chr3_4:64965173-64965192 None:intergenic 45.0%
GGTAGGAAGAAGGAGAGAAT+AGG - chr3_4:64965187-64965206 None:intergenic 45.0%
!!! GTTTTGGCTCTCATCATAGG+TGG + chr3_4:64965363-64965382 Msa0514280:CDS 45.0%
!! CTCATCATAGGTGGCTCTAA+TGG + chr3_4:64965372-64965391 Msa0514280:CDS 45.0%
CATGTCTGGACTTTGCAACT+GGG + chr3_4:64965445-64965464 Msa0514280:CDS 45.0%
!! GAAAGCACCTACACCAAAGA+AGG + chr3_4:64965467-64965486 Msa0514280:CDS 45.0%
! CAGCATTCCTTCTTTGGTGT+AGG - chr3_4:64965477-64965496 None:intergenic 45.0%
GCATCACAGCATTCCTTCTT+TGG - chr3_4:64965483-64965502 None:intergenic 45.0%
TACCCATGCTCTTGCTTTCA+GGG - chr3_4:64965575-64965594 None:intergenic 45.0%
ATACCCATGCTCTTGCTTTC+AGG - chr3_4:64965576-64965595 None:intergenic 45.0%
! AAGCAAGAGCATGGGTATTC+AGG + chr3_4:64965578-64965597 Msa0514280:CDS 45.0%
CGTTGACGTGACAAACAGTA+GGG - chr3_4:64965623-64965642 None:intergenic 45.0%
CCTACTGTTTGTCACGTCAA+CGG + chr3_4:64965621-64965640 Msa0514280:CDS 45.0%
ACACACGCATAGAGTTATCC+CGG + chr3_4:64966595-64966614 Msa0514280:intron 45.0%
CTTAATCATCGACAAGAGGC+AGG - chr3_4:64966787-64966806 None:intergenic 45.0%
CCCACAATATTCTCTTGCGT+TGG + chr3_4:64967014-64967033 Msa0514280:intron 45.0%
CCCAACGCAAGAGAATATTG+TGG - chr3_4:64967018-64967037 None:intergenic 45.0%
CAATATTCTCTTGCGTTGGG+AGG + chr3_4:64967018-64967037 Msa0514280:intron 45.0%
GACCTGTCATCTATATTGGG+TGG + chr3_4:64967669-64967688 Msa0514280:intron 45.0%
TCCCACCCAATATAGATGAC+AGG - chr3_4:64967674-64967693 None:intergenic 45.0%
TGTCATCTATATTGGGTGGG+AGG + chr3_4:64967673-64967692 Msa0514280:intron 45.0%
TCTTGCTAACAAGTGCCCTA+AGG + chr3_4:64967965-64967984 Msa0514280:intron 45.0%
CTTGCTAACAAGTGCCCTAA+GGG + chr3_4:64967966-64967985 Msa0514280:intron 45.0%
!! TGCCCTAAGGGCATTGTTTA+AGG + chr3_4:64967978-64967997 Msa0514280:intron 45.0%
TTCCTTAGCATATGCCCTTG+GGG + chr3_4:64969405-64969424 Msa0514280:intron 45.0%
! TTTAAAGATTGCAGCGTCGG+GGG - chr3_4:64969615-64969634 None:intergenic 45.0%
! GATCATGACAGGTCTAAGGT+TGG - chr3_4:64969729-64969748 None:intergenic 45.0%
!! CAACGTGATAACGGTGACTT+TGG + chr3_4:64969751-64969770 Msa0514280:CDS 45.0%
! AGGTACTGCAGCAAGAACAA+TGG - chr3_4:64969777-64969796 None:intergenic 45.0%
TTGTCTCTGCTGCTGTGTAA+TGG + chr3_4:64969944-64969963 Msa0514280:three_prime_UTR 45.0%
!! ATTAGATATTTAATAAAATA+AGG - chr3_4:64966370-64966389 None:intergenic 5.0%
!!! ATACTATTAATTTTTTTTTT+TGG + chr3_4:64967473-64967492 Msa0514280:intron 5.0%
!!! AAATATAAAAATTTAACTTT+TGG - chr3_4:64968666-64968685 None:intergenic 5.0%
GGCTTCAAAGTGTGGATCAG+TGG + chr3_4:64965407-64965426 Msa0514280:CDS 50.0%
CCAGTTGCAAAGTCCAGACA+TGG - chr3_4:64965447-64965466 None:intergenic 50.0%
CCATGTCTGGACTTTGCAAC+TGG + chr3_4:64965444-64965463 Msa0514280:CDS 50.0%
TAGCCCTGAAAGCAAGAGCA+TGG + chr3_4:64965569-64965588 Msa0514280:CDS 50.0%
! AGCCCTGAAAGCAAGAGCAT+GGG + chr3_4:64965570-64965589 Msa0514280:CDS 50.0%
CCGTTGACGTGACAAACAGT+AGG - chr3_4:64965624-64965643 None:intergenic 50.0%
ACTGGGACAGTCGGAAATGT+TGG - chr3_4:64965649-64965668 None:intergenic 50.0%
!!! AGGGAAGCTACGTTTTGGAG+AGG - chr3_4:64966558-64966577 None:intergenic 50.0%
ATTCTCTTGCGTTGGGAGGT+TGG + chr3_4:64967022-64967041 Msa0514280:intron 50.0%
TTCTCTTGCGTTGGGAGGTT+GGG + chr3_4:64967023-64967042 Msa0514280:intron 50.0%
TTGGGTGGGAGGATGAGAAT+TGG + chr3_4:64967684-64967703 Msa0514280:intron 50.0%
GGAGGATGAGAATTGGTTGC+AGG + chr3_4:64967691-64967710 Msa0514280:intron 50.0%
TGCAGACCTTGCATCTAGAC+AGG + chr3_4:64967722-64967741 Msa0514280:intron 50.0%
GTAGTTGCAGCAGCTGATGA+AGG - chr3_4:64969662-64969681 None:intergenic 50.0%
AACTCCTACAACTCCGACCT+CGG + chr3_4:64969685-64969704 Msa0514280:CDS 50.0%
! TGCCCCAAGGGCATATGCTA+AGG - chr3_4:64969410-64969429 None:intergenic 55.0%
GGTATGGTGACAGAGCTGCT+TGG + chr3_4:64969575-64969594 Msa0514280:intron 55.0%
GCAGCAGCTGATGAAGGAGT+AGG - chr3_4:64969656-64969675 None:intergenic 55.0%
GGTCGGAGTTGTAGGAGTTG+CGG - chr3_4:64969684-64969703 None:intergenic 55.0%
GTTCTTGCTGCAGTACCTGC+TGG + chr3_4:64969779-64969798 Msa0514280:CDS 55.0%
CTTGCCGAGGTCGGAGTTGT+AGG - chr3_4:64969692-64969711 None:intergenic 60.0%
TGAACCACCTGTGCTTGCCG+AGG - chr3_4:64969705-64969724 None:intergenic 60.0%
ACTCCGACCTCGGCAAGCAC+AGG + chr3_4:64969695-64969714 Msa0514280:CDS 65.0%
CCACCTGTGCTTGCCGAGGT+CGG - chr3_4:64969701-64969720 None:intergenic 65.0%
CCGACCTCGGCAAGCACAGG+TGG + chr3_4:64969698-64969717 Msa0514280:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 64965053 64970190 64965053 ID=Msa0514280;Name=Msa0514280
chr3_4 mRNA 64965053 64970190 64965053 ID=Msa0514280-mRNA-1;Parent=Msa0514280;Name=Msa0514280-mRNA-1;_AED=0.03;_eAED=0.03;_QI=271|1|1|1|1|1|2|367|192
chr3_4 exon 64965053 64965666 64965053 ID=Msa0514280-mRNA-1:exon:16392;Parent=Msa0514280-mRNA-1
chr3_4 exon 64969588 64970190 64969588 ID=Msa0514280-mRNA-1:exon:16393;Parent=Msa0514280-mRNA-1
chr3_4 five_prime_UTR 64965053 64965323 64965053 ID=Msa0514280-mRNA-1:five_prime_utr;Parent=Msa0514280-mRNA-1
chr3_4 CDS 64965324 64965666 64965324 ID=Msa0514280-mRNA-1:cds;Parent=Msa0514280-mRNA-1
chr3_4 CDS 64969588 64969823 64969588 ID=Msa0514280-mRNA-1:cds;Parent=Msa0514280-mRNA-1
chr3_4 three_prime_UTR 64969824 64970190 64969824 ID=Msa0514280-mRNA-1:three_prime_utr;Parent=Msa0514280-mRNA-1
Gene Sequence

>Msa0514280

ATGAAGAACCAACAACATCAAATGTTTATGTGTCTGTGTGTTTTGGCTCTCATCATAGGTGGCTCTAATGGAGCTGAAGATTTGGCTTCAAAGTGTGGATCAGTGGTTCAAAAAGTGATTCCATGTCTGGACTTTGCAACTGGGAAAGCACCTACACCAAAGAAGGAATGCTGTGATGCAGCTAACAGTATCAAGGCAACGGATCCAGAGTGTTTGTGCTATATCATTCAACAGACTCATAAGGGTAGCCCTGAAAGCAAGAGCATGGGTATTCAGGAAGATAAGCTTCTTCAACTCCCTACTGTTTGTCACGTCAACGGCGCCAACATTTCCGACTGTCCCAAGCTGCTTGGTCTATCTGCAAACTCCCCCGACGCTGCAATCTTTAAAAATGCTTCAAGGACAAATCCTACTCCTTCATCAGCTGCTGCAACTACCGCAACTCCTACAACTCCGACCTCGGCAAGCACAGGTGGTTCATCCAACCTTAGACCTGTCATGATCAACAACGTGATAACGGTGACTTTGGCCATTGTTCTTGCTGCAGTACCTGCTGGATTTATCAGCATTTATACATGA

Protein sequence

>Msa0514280

MKNQQHQMFMCLCVLALIIGGSNGAEDLASKCGSVVQKVIPCLDFATGKAPTPKKECCDAANSIKATDPECLCYIIQQTHKGSPESKSMGIQEDKLLQLPTVCHVNGANISDCPKLLGLSANSPDAAIFKNASRTNPTPSSAAATTATPTTPTSASTGGSSNLRPVMINNVITVTLAIVLAAVPAGFISIYT*