Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1300850 | XP_003609353.2 | 95.812 | 191 | 6 | 1 | 1 | 189 | 1 | 191 | 1.07e-132 | 379 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1300850 | sp|Q8GW46|YAB5_ARATH | 75.301 | 166 | 35 | 2 | 7 | 172 | 4 | 163 | 7.05e-87 | 255 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1300850 | A0A396IM32 | 95.812 | 191 | 6 | 1 | 1 | 189 | 1 | 191 | 5.11e-133 | 379 |
Gene ID | Type | Classification |
---|---|---|
Msa1300850 | TF | C2C2-YABBY |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0047630 | Msa1300850 | 0.801274 | 9.726591e-49 | -8.615850e-47 |
Msa0094060 | Msa1300850 | 0.835317 | 1.800547e-56 | -8.615850e-47 |
Msa0099830 | Msa1300850 | 0.832632 | 8.463862e-56 | -8.615850e-47 |
Msa0104860 | Msa1300850 | -0.801034 | 1.089182e-48 | -8.615850e-47 |
Msa0607070 | Msa1300850 | 0.806547 | 7.801592e-50 | -8.615850e-47 |
Msa0608280 | Msa1300850 | 0.801772 | 7.689596e-49 | -8.615850e-47 |
Msa0617650 | Msa1300850 | 0.847206 | 1.339400e-59 | -8.615850e-47 |
Msa0648840 | Msa1300850 | 0.814831 | 1.261162e-51 | -8.615850e-47 |
Msa0656950 | Msa1300850 | 0.808099 | 3.657084e-50 | -8.615850e-47 |
Msa0679270 | Msa1300850 | 0.808914 | 2.450858e-50 | -8.615850e-47 |
Msa0700610 | Msa1300850 | 0.808386 | 3.177669e-50 | -8.615850e-47 |
Msa0746640 | Msa1300850 | 0.838726 | 2.422999e-57 | -8.615850e-47 |
Msa0821490 | Msa1300850 | 0.802475 | 5.513487e-49 | -8.615850e-47 |
Msa0184070 | Msa1300850 | 0.825629 | 4.224770e-54 | -8.615850e-47 |
Msa0204000 | Msa1300850 | 0.803006 | 4.283362e-49 | -8.615850e-47 |
Msa0224700 | Msa1300850 | 0.842439 | 2.583760e-58 | -8.615850e-47 |
Msa1262630 | Msa1300850 | 0.804921 | 1.712915e-49 | -8.615850e-47 |
Msa1275290 | Msa1300850 | 0.822568 | 2.209625e-53 | -8.615850e-47 |
Msa1280370 | Msa1300850 | -0.804200 | 2.421075e-49 | -8.615850e-47 |
Msa1300850 | Msa1313460 | 0.804082 | 2.562751e-49 | -8.615850e-47 |
Msa1300850 | Msa1330240 | 0.814784 | 1.291704e-51 | -8.615850e-47 |
Msa1300850 | Msa1347400 | 0.848708 | 5.160911e-60 | -8.615850e-47 |
Msa1300850 | Msa1369860 | 0.828870 | 7.067186e-55 | -8.615850e-47 |
Msa1300850 | Msa1417650 | 0.803811 | 2.916382e-49 | -8.615850e-47 |
Msa0382290 | Msa1300850 | 0.814382 | 1.585181e-51 | -8.615850e-47 |
Msa0385400 | Msa1300850 | 0.819886 | 9.174973e-53 | -8.615850e-47 |
Msa0392410 | Msa1300850 | 0.817704 | 2.871872e-52 | -8.615850e-47 |
Msa0392450 | Msa1300850 | 0.818969 | 1.485298e-52 | -8.615850e-47 |
Msa0392480 | Msa1300850 | 0.824903 | 6.272372e-54 | -8.615850e-47 |
Msa0421790 | Msa1300850 | 0.857863 | 1.221640e-62 | -8.615850e-47 |
Msa0431800 | Msa1300850 | 0.804337 | 2.267333e-49 | -8.615850e-47 |
Msa0450830 | Msa1300850 | 0.804758 | 1.852635e-49 | -8.615850e-47 |
Msa0467890 | Msa1300850 | 0.872712 | 2.575982e-67 | -8.615850e-47 |
Msa0467970 | Msa1300850 | 0.875416 | 3.135951e-68 | -8.615850e-47 |
Msa0982720 | Msa1300850 | 0.846932 | 1.591834e-59 | -8.615850e-47 |
Msa0988030 | Msa1300850 | 0.844606 | 6.812881e-59 | -8.615850e-47 |
Msa1007980 | Msa1300850 | 0.802088 | 6.621668e-49 | -8.615850e-47 |
Msa0247340 | Msa1300850 | 0.817580 | 3.063705e-52 | -8.615850e-47 |
Msa0265780 | Msa1300850 | 0.836150 | 1.107522e-56 | -8.615850e-47 |
Msa0303780 | Msa1300850 | 0.848878 | 4.629211e-60 | -8.615850e-47 |
Msa1129150 | Msa1300850 | 0.810770 | 9.770136e-51 | -8.615850e-47 |
Msa1129920 | Msa1300850 | 0.824547 | 7.609639e-54 | -8.615850e-47 |
Msa1143380 | Msa1300850 | 0.840693 | 7.458174e-58 | -8.615850e-47 |
Msa1178470 | Msa1300850 | 0.813946 | 1.978143e-51 | -8.615850e-47 |
Msa1208510 | Msa1300850 | 0.831277 | 1.828655e-55 | -8.615850e-47 |
Msa1214730 | Msa1300850 | 0.900251 | 8.831259e-78 | -8.615850e-47 |
Msa1214870 | Msa1300850 | 0.910588 | 1.583316e-82 | -8.615850e-47 |
Msa1217020 | Msa1300850 | 0.800262 | 1.565500e-48 | -8.615850e-47 |
Msa1217170 | Msa1300850 | 0.810953 | 8.920836e-51 | -8.615850e-47 |
Msa0487560 | Msa1300850 | 0.815920 | 7.220816e-52 | -8.615850e-47 |
Msa0487620 | Msa1300850 | 0.818861 | 1.571676e-52 | -8.615850e-47 |
Msa0490440 | Msa1300850 | 0.815503 | 8.939556e-52 | -8.615850e-47 |
Msa0510230 | Msa1300850 | 0.800329 | 1.516532e-48 | -8.615850e-47 |
Msa0514280 | Msa1300850 | 0.881936 | 1.585128e-70 | -8.615850e-47 |
Msa0520730 | Msa1300850 | 0.811496 | 6.801755e-51 | -8.615850e-47 |
Msa0544780 | Msa1300850 | 0.804924 | 1.710376e-49 | -8.615850e-47 |
Msa0547790 | Msa1300850 | 0.810887 | 9.217486e-51 | -8.615850e-47 |
Msa0564150 | Msa1300850 | 0.828380 | 9.282511e-55 | -8.615850e-47 |
Msa0855490 | Msa1300850 | 0.802815 | 4.690716e-49 | -8.615850e-47 |
Msa0871860 | Msa1300850 | 0.821992 | 3.005993e-53 | -8.615850e-47 |
Msa0886880 | Msa1300850 | 0.859530 | 3.880487e-63 | -8.615850e-47 |
Msa0905200 | Msa1300850 | 0.802339 | 5.879537e-49 | -8.615850e-47 |
Msa0937190 | Msa1300850 | 0.814742 | 1.319173e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1300850 | MtrunA17_Chr4g0063931 | 95.812 | 191 | 6 | 1 | 1 | 189 | 1 | 191 | 9.83e-137 | 379 |
Msa1300850 | MtrunA17_Chr2g0322221 | 56.667 | 180 | 67 | 4 | 5 | 173 | 2 | 181 | 3.50e-60 | 186 |
Msa1300850 | MtrunA17_Chr4g0011841 | 53.403 | 191 | 63 | 4 | 14 | 184 | 25 | 209 | 2.08e-54 | 172 |
Msa1300850 | MtrunA17_Chr4g0025361 | 56.647 | 173 | 61 | 6 | 5 | 173 | 2 | 164 | 4.67e-53 | 167 |
Msa1300850 | MtrunA17_Chr4g0056521 | 54.971 | 171 | 59 | 4 | 8 | 163 | 14 | 181 | 1.82e-50 | 162 |
Msa1300850 | MtrunA17_Chr5g0413381 | 49.686 | 159 | 58 | 4 | 12 | 156 | 12 | 162 | 1.59e-45 | 149 |
Msa1300850 | MtrunA17_Chr5g0419871 | 41.830 | 153 | 82 | 2 | 5 | 155 | 8 | 155 | 5.38e-32 | 113 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1300850 | AT2G26580.2 | 75.301 | 166 | 35 | 2 | 7 | 172 | 4 | 163 | 7.16e-88 | 255 |
Msa1300850 | AT2G26580.1 | 75.301 | 166 | 35 | 2 | 7 | 172 | 4 | 163 | 7.16e-88 | 255 |
Msa1300850 | AT1G08465.1 | 53.631 | 179 | 60 | 5 | 5 | 171 | 2 | 169 | 5.45e-56 | 175 |
Msa1300850 | AT2G45190.1 | 54.802 | 177 | 63 | 6 | 4 | 163 | 14 | 190 | 2.31e-54 | 172 |
Msa1300850 | AT4G00180.1 | 50.811 | 185 | 57 | 4 | 12 | 165 | 23 | 204 | 1.47e-47 | 155 |
Msa1300850 | AT4G00180.2 | 48.864 | 176 | 56 | 4 | 21 | 165 | 1 | 173 | 2.84e-39 | 133 |
Msa1300850 | AT1G23420.1 | 47.205 | 161 | 71 | 3 | 13 | 159 | 20 | 180 | 1.05e-38 | 132 |
Msa1300850 | AT1G23420.2 | 47.205 | 161 | 71 | 3 | 13 | 159 | 51 | 211 | 3.06e-38 | 132 |
Msa1300850 | AT2G45190.2 | 92.982 | 57 | 4 | 0 | 107 | 163 | 70 | 126 | 4.44e-34 | 119 |
Msa1300850 | AT1G69180.1 | 42.069 | 145 | 78 | 2 | 11 | 155 | 18 | 156 | 4.05e-32 | 114 |
Find 50 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCGCTTACTACTTGTTTAA+TGG | 0.111264 | 8_3:-62535393 | Msa1300850:three_prime_UTR |
TATAATAGACTAGCCAAATT+TGG | 0.202022 | 8_3:+62535276 | None:intergenic |
TGCAATCCTATCGTTGCATT+TGG | 0.296610 | 8_3:+62536399 | None:intergenic |
GATGATCCGGAATCCAAATT+TGG | 0.301410 | 8_3:-62535289 | Msa1300850:three_prime_UTR |
GACTAGCCAAATTTGGATTC+CGG | 0.350145 | 8_3:+62535283 | None:intergenic |
GCTTCTCTGTGACTGATATC+AGG | 0.363234 | 8_3:+62535889 | None:intergenic |
GCAATCCTATCGTTGCATTT+GGG | 0.399881 | 8_3:+62536400 | None:intergenic |
ACTGTCATGGCAAGATGTTC+AGG | 0.423195 | 8_3:-62537659 | Msa1300850:intron |
GTGGTCACTGCACAAATCTA+TGG | 0.424333 | 8_3:-62537711 | Msa1300850:CDS |
AGGTACACGTTGCCTCTTCT+CGG | 0.458670 | 8_3:+62536078 | None:intergenic |
ATCAGCCCAAAATGAATATG+AGG | 0.476928 | 8_3:+62535748 | None:intergenic |
CACCCATGTTACTGAGGAAA+GGG | 0.483814 | 8_3:-62536359 | Msa1300850:CDS |
ATTAAAGATAGAAACTGATA+AGG | 0.484078 | 8_3:+62535325 | None:intergenic |
GAGCAACAATCAAGCTAAGA+TGG | 0.499438 | 8_3:-62535719 | Msa1300850:CDS |
TCCTCAGTAACATGGGTGGT+TGG | 0.501150 | 8_3:+62536364 | None:intergenic |
ACTGCATGAATCCAGAGTAT+AGG | 0.501971 | 8_3:-62536441 | Msa1300850:CDS |
GGTACACGTTGCCTCTTCTC+GGG | 0.503039 | 8_3:+62536079 | None:intergenic |
CAACCCTTTCCTCAGTAACA+TGG | 0.504380 | 8_3:+62536356 | None:intergenic |
TTGTTCATAAGATGTTAACT+AGG | 0.512933 | 8_3:-62535534 | Msa1300850:three_prime_UTR |
TGAGAAGCGTTTGATGTCTA+CGG | 0.515736 | 8_3:-62535588 | Msa1300850:CDS |
ATGTAGCAGAGTTGTTCAGC+AGG | 0.519727 | 8_3:+62538809 | None:intergenic |
ATATAGATAGATAGATGATC+CGG | 0.525158 | 8_3:-62535302 | Msa1300850:three_prime_UTR |
TCCTTAACTCATGAAAAGTC+AGG | 0.525284 | 8_3:+62535467 | None:intergenic |
CCTATCGTTGCATTTGGGAG+TGG | 0.533061 | 8_3:+62536405 | None:intergenic |
ACAATATTGCAAAAGTTGCA+AGG | 0.540036 | 8_3:+62538785 | None:intergenic |
AATTTCCAGCTCCCGAGAAG+AGG | 0.540719 | 8_3:-62536090 | Msa1300850:intron |
AAATCTATGGTCTGTAAACA+TGG | 0.552321 | 8_3:-62537698 | Msa1300850:CDS |
CAGCTAGACATGTCTCTACA+AGG | 0.553900 | 8_3:+62538848 | None:intergenic |
CCGCGTTTCAGTCACTGTCA+TGG | 0.556178 | 8_3:-62537672 | Msa1300850:CDS |
TCTGGATTCATGCAGTGGCT+AGG | 0.562771 | 8_3:+62536448 | None:intergenic |
CTAGTTCGAATCCTATACTC+TGG | 0.567724 | 8_3:+62536430 | None:intergenic |
GGAAGAGATTCAGAGGATCA+AGG | 0.576711 | 8_3:-62535920 | Msa1300850:CDS |
CAATATTGCAAAAGTTGCAA+GGG | 0.579397 | 8_3:+62538786 | None:intergenic |
CCACCCATGTTACTGAGGAA+AGG | 0.581614 | 8_3:-62536360 | Msa1300850:CDS |
AGAAACTGATAAGGATGACA+AGG | 0.582761 | 8_3:+62535334 | None:intergenic |
ATGAACTGATTATAAGCAGA+AGG | 0.586762 | 8_3:+62536058 | None:intergenic |
CCACTCCCAAATGCAACGAT+AGG | 0.592244 | 8_3:-62536405 | Msa1300850:CDS |
AGACATGTCTAGCTGTAGCA+TGG | 0.594915 | 8_3:-62538840 | Msa1300850:exon |
ATTTCAAACAAGCTACTGCA+TGG | 0.595371 | 8_3:+62537748 | None:intergenic |
TCCATTAAACAAGTAGTAAG+CGG | 0.601542 | 8_3:+62535392 | None:intergenic |
TATGCAGGGAAGAGATTCAG+AGG | 0.621557 | 8_3:-62535927 | Msa1300850:intron |
AACCCTTTCCTCAGTAACAT+GGG | 0.626838 | 8_3:+62536357 | None:intergenic |
TATACTCTGGATTCATGCAG+TGG | 0.629931 | 8_3:+62536443 | None:intergenic |
TGTGCAGTGACCACATCGAA+CGG | 0.632060 | 8_3:+62537720 | None:intergenic |
ACCAACCACCCATGTTACTG+AGG | 0.669098 | 8_3:-62536365 | Msa1300850:CDS |
GAAATAGTGACCGTTCGATG+TGG | 0.670282 | 8_3:-62537730 | Msa1300850:CDS |
CCTTTCCTCAGTAACATGGG+TGG | 0.674444 | 8_3:+62536360 | None:intergenic |
GAAACTGATAAGGATGACAA+GGG | 0.679298 | 8_3:+62535335 | None:intergenic |
CCATGACAGTGACTGAAACG+CGG | 0.691630 | 8_3:+62537672 | None:intergenic |
TGACAGTGACTGAAACGCGG+CGG | 0.753574 | 8_3:+62537675 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAGAAAAATGTATAAATAA+AGG | - | chr8_3:62537275-62537294 | Msa1300850:intron | 10.0% |
!!! | ATTATTTCTTTATTTTTTAG+TGG | - | chr8_3:62538427-62538446 | Msa1300850:intron | 10.0% |
!!! | TTATTTCTTTATTTTTTAGT+GGG | - | chr8_3:62538428-62538447 | Msa1300850:intron | 10.0% |
!! | TAATGATTGAAAAATTAAAT+TGG | + | chr8_3:62538536-62538555 | None:intergenic | 10.0% |
!!! | TGATTATTTTTATTATATTC+AGG | - | chr8_3:62538592-62538611 | Msa1300850:intron | 10.0% |
!!! | TTTTTATTTTAATTGCAAGA+AGG | - | chr8_3:62535549-62535568 | Msa1300850:exon | 15.0% |
!! | TAAACAAGAGAAAATTAATT+AGG | + | chr8_3:62536138-62536157 | None:intergenic | 15.0% |
!!! | TGGATTTTTTTTTTTTTTTG+TGG | - | chr8_3:62536274-62536293 | Msa1300850:intron | 15.0% |
!!! | GGATTTTTTTTTTTTTTTGT+GGG | - | chr8_3:62536275-62536294 | Msa1300850:intron | 15.0% |
!! | TATTTAGTGTTATATTGTAT+TGG | - | chr8_3:62537340-62537359 | Msa1300850:intron | 15.0% |
!! | ATTTAGTGTTATATTGTATT+GGG | - | chr8_3:62537341-62537360 | Msa1300850:intron | 15.0% |
!! | TTTAAATAGATAGGAAAAAA+AGG | + | chr8_3:62537913-62537932 | None:intergenic | 15.0% |
!!! | TCATAATTTTATATATATGC+AGG | - | chr8_3:62538265-62538284 | Msa1300850:intron | 15.0% |
!!! | CATAATTTTATATATATGCA+GGG | - | chr8_3:62538266-62538285 | Msa1300850:intron | 15.0% |
!!! | ATATACTTGATAGTTTTCTT+TGG | - | chr8_3:62535593-62535612 | Msa1300850:CDS | 20.0% |
!!! | ATATTTTAATTCTCTCTTTC+TGG | - | chr8_3:62535748-62535767 | Msa1300850:CDS | 20.0% |
!!! | TATTTTAATTCTCTCTTTCT+GGG | - | chr8_3:62535749-62535768 | Msa1300850:CDS | 20.0% |
!!! | AGTTTTGATGATAAACATAA+TGG | - | chr8_3:62535993-62536012 | Msa1300850:intron | 20.0% |
!!! | TATCATTTAGTGATTTGTTT+TGG | + | chr8_3:62536038-62536057 | None:intergenic | 20.0% |
!! | TGTTTAAACTTAAACATACA+AGG | - | chr8_3:62536152-62536171 | Msa1300850:intron | 20.0% |
!! | TAATTAATTACTACTAGCTA+GGG | + | chr8_3:62537061-62537080 | None:intergenic | 20.0% |
!! | ATAATTAATTACTACTAGCT+AGG | + | chr8_3:62537062-62537081 | None:intergenic | 20.0% |
!! | AAAGTGGAATATATTGTATT+GGG | - | chr8_3:62537300-62537319 | Msa1300850:intron | 20.0% |
!!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr8_3:62537410-62537429 | Msa1300850:intron | 20.0% |
!! | ATCAATGAAACAATAAAGTA+AGG | + | chr8_3:62537727-62537746 | None:intergenic | 20.0% |
!! | AATTTAGAAAATAAACTACG+TGG | + | chr8_3:62538015-62538034 | None:intergenic | 20.0% |
!!! | GTATATATAGTTGATTCAAT+TGG | - | chr8_3:62538211-62538230 | Msa1300850:intron | 20.0% |
!!! | ATTTTCCTCATATTCATTTT+GGG | - | chr8_3:62538454-62538473 | Msa1300850:intron | 20.0% |
!! | ATTAAAGATAGAAACTGATA+AGG | + | chr8_3:62538885-62538904 | None:intergenic | 20.0% |
! | AAAACTCCTTATAGTTTACT+TGG | - | chr8_3:62535473-62535492 | Msa1300850:three_prime_UTR | 25.0% |
! | TGAATGAATTCCTTTATACT+TGG | + | chr8_3:62535661-62535680 | None:intergenic | 25.0% |
!!! | ATTCTTTATTTTCTACCTCT+TGG | - | chr8_3:62536101-62536120 | Msa1300850:intron | 25.0% |
! | GCTAGTTAGTAATTAATCAA+AGG | - | chr8_3:62536408-62536427 | Msa1300850:CDS | 25.0% |
!! | AAAATCGAAGTATCTTAGTT+AGG | - | chr8_3:62536728-62536747 | Msa1300850:intron | 25.0% |
!!! | AAATAGGTTTGTTTTTATGG+CGG | + | chr8_3:62536856-62536875 | None:intergenic | 25.0% |
!!! | GGAAAATAGGTTTGTTTTTA+TGG | + | chr8_3:62536859-62536878 | None:intergenic | 25.0% |
! | AGTCTATGAAAAAGGAAAAT+AGG | + | chr8_3:62536872-62536891 | None:intergenic | 25.0% |
!! | AAAACATTTTCAGTATGGTT+TGG | + | chr8_3:62536922-62536941 | None:intergenic | 25.0% |
!! | TAAGCAAAACATTTTCAGTA+TGG | + | chr8_3:62536927-62536946 | None:intergenic | 25.0% |
! | AATTAATTACTACTAGCTAG+GGG | + | chr8_3:62537060-62537079 | None:intergenic | 25.0% |
! | TGTATAAATAAAGGAGAAAG+TGG | - | chr8_3:62537284-62537303 | Msa1300850:intron | 25.0% |
! | GAAAGTGGAATATATTGTAT+TGG | - | chr8_3:62537299-62537318 | Msa1300850:intron | 25.0% |
!! | TTGAAATGAGTCAGTTATTT+TGG | - | chr8_3:62537387-62537406 | Msa1300850:intron | 25.0% |
!!! | TGAAATGAGTCAGTTATTTT+GGG | - | chr8_3:62537388-62537407 | Msa1300850:intron | 25.0% |
!!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr8_3:62537409-62537428 | Msa1300850:intron | 25.0% |
! | ATGAAACAATAAAGTAAGGA+AGG | + | chr8_3:62537723-62537742 | None:intergenic | 25.0% |
!!! | TTGTTTCATTGATTTTCTTC+AGG | - | chr8_3:62537734-62537753 | Msa1300850:CDS | 25.0% |
!! | CATTTTCCTCATATTCATTT+TGG | - | chr8_3:62538453-62538472 | Msa1300850:intron | 25.0% |
! | TTGTTCATAAGATGTTAACT+AGG | - | chr8_3:62538673-62538692 | Msa1300850:intron | 25.0% |
! | ATATAGATAGATAGATGATC+CGG | - | chr8_3:62538905-62538924 | Msa1300850:five_prime_UTR | 25.0% |
!! | TATAATAGACTAGCCAAATT+TGG | + | chr8_3:62538934-62538953 | None:intergenic | 25.0% |
CAATATTGCAAAAGTTGCAA+GGG | + | chr8_3:62535424-62535443 | None:intergenic | 30.0% | |
ACAATATTGCAAAAGTTGCA+AGG | + | chr8_3:62535425-62535444 | None:intergenic | 30.0% | |
! | CTTTTGCAATATTGTTCTTG+CGG | - | chr8_3:62535430-62535449 | Msa1300850:three_prime_UTR | 30.0% |
TCAGATCCAAGTAAACTATA+AGG | + | chr8_3:62535482-62535501 | None:intergenic | 30.0% | |
ATATATATGTAGCATGCAAG+AGG | + | chr8_3:62535512-62535531 | None:intergenic | 30.0% | |
!! | TGATAGTTTTCTTTGGTCTT+TGG | - | chr8_3:62535600-62535619 | Msa1300850:intron | 30.0% |
GTGTACATATCCAAGTATAA+AGG | - | chr8_3:62535648-62535667 | Msa1300850:intron | 30.0% | |
AATTCATTCAGATCCTGAAA+AGG | - | chr8_3:62535671-62535690 | Msa1300850:intron | 30.0% | |
! | ATTTGATAACCTTGATGAGA+GGG | + | chr8_3:62535848-62535867 | None:intergenic | 30.0% |
! | TATTTGATAACCTTGATGAG+AGG | + | chr8_3:62535849-62535868 | None:intergenic | 30.0% |
GAAAGAAAGAGAAAGAGAAA+GGG | + | chr8_3:62535897-62535916 | None:intergenic | 30.0% | |
TGAAAGAAAGAGAAAGAGAA+AGG | + | chr8_3:62535898-62535917 | None:intergenic | 30.0% | |
CTTTCTTTCAAGCTAAAACA+AGG | - | chr8_3:62535908-62535927 | Msa1300850:CDS | 30.0% | |
AAAACAAGGCATATAGAGAA+AGG | - | chr8_3:62535922-62535941 | Msa1300850:CDS | 30.0% | |
AAACAAGGCATATAGAGAAA+GGG | - | chr8_3:62535923-62535942 | Msa1300850:CDS | 30.0% | |
TAAAGAATAGAGAAGAAGAG+AGG | + | chr8_3:62536089-62536108 | None:intergenic | 30.0% | |
! | TCTTTGAAAAAGAGTTGAGA+AGG | + | chr8_3:62536203-62536222 | None:intergenic | 30.0% |
!!! | AATCCTCATTTTTCAAGATC+AGG | - | chr8_3:62536225-62536244 | Msa1300850:intron | 30.0% |
!! | TCACATTTCACACTTGTTAT+GGG | + | chr8_3:62536252-62536271 | None:intergenic | 30.0% |
! | ATCACATTTCACACTTGTTA+TGG | + | chr8_3:62536253-62536272 | None:intergenic | 30.0% |
ACACACACAAAAAAAGTCAA+CGG | + | chr8_3:62536336-62536355 | None:intergenic | 30.0% | |
AAATCTATGGTCTGTAAACA+TGG | - | chr8_3:62536509-62536528 | Msa1300850:intron | 30.0% | |
AAAATAGATCTATCCTAGCT+AGG | - | chr8_3:62536645-62536664 | Msa1300850:intron | 30.0% | |
ATTAATTACTACTAGCTAGG+GGG | + | chr8_3:62537059-62537078 | None:intergenic | 30.0% | |
AGAAAATGGGTCAGTTATTT+CGG | - | chr8_3:62537423-62537442 | Msa1300850:intron | 30.0% | |
!! | CTTGTTAAGTTGGAAATACT+AGG | + | chr8_3:62537662-62537681 | None:intergenic | 30.0% |
ACAGTTCTTTCTTGTTAAGT+TGG | + | chr8_3:62537672-62537691 | None:intergenic | 30.0% | |
! | GAGAGTATATAGTAAACTCA+CGG | + | chr8_3:62537884-62537903 | None:intergenic | 30.0% |
! | TAGTATTTCTATGCTCGTTA+AGG | + | chr8_3:62538047-62538066 | None:intergenic | 30.0% |
ATGAACTGATTATAAGCAGA+AGG | + | chr8_3:62538152-62538171 | None:intergenic | 30.0% | |
TCCATTAAACAAGTAGTAAG+CGG | + | chr8_3:62538818-62538837 | None:intergenic | 30.0% | |
GAAGAAGAAGAAGAAGAAGA+AGG | + | chr8_3:62535300-62535319 | None:intergenic | 35.0% | |
TTGAAAAAGAGTTGAGAAGG+TGG | + | chr8_3:62536200-62536219 | None:intergenic | 35.0% | |
AACAAGTGTGAAATGTGATG+TGG | - | chr8_3:62536254-62536273 | Msa1300850:intron | 35.0% | |
ATTTCAAACAAGCTACTGCA+TGG | + | chr8_3:62536462-62536481 | None:intergenic | 35.0% | |
TTCTGACGAGTCTATGAAAA+AGG | + | chr8_3:62536880-62536899 | None:intergenic | 35.0% | |
!! | ATTTTCAGTATGGTTTGGCT+TGG | + | chr8_3:62536917-62536936 | None:intergenic | 35.0% |
! | AAAGACTTTTGCCTTTGCTT+TGG | - | chr8_3:62536948-62536967 | Msa1300850:intron | 35.0% |
! | AAGACTTTTGCCTTTGCTTT+GGG | - | chr8_3:62536949-62536968 | Msa1300850:intron | 35.0% |
! | ACACATCAAATCAGTTCTGA+AGG | + | chr8_3:62536980-62536999 | None:intergenic | 35.0% |
!! | TCAGAACTGATTTGATGTGT+AGG | - | chr8_3:62536980-62536999 | Msa1300850:intron | 35.0% |
TGATGTGTAGGAAAAGTTCA+AGG | - | chr8_3:62536992-62537011 | Msa1300850:intron | 35.0% | |
CAAAGTAGGTCAATTAAACC+GGG | + | chr8_3:62537240-62537259 | None:intergenic | 35.0% | |
CCAAAGTAGGTCAATTAAAC+CGG | + | chr8_3:62537241-62537260 | None:intergenic | 35.0% | |
TCTGTGTGAAAAACCAAAGT+AGG | + | chr8_3:62537254-62537273 | None:intergenic | 35.0% | |
! | GAAAATGGGTCAGTTATTTC+GGG | - | chr8_3:62537424-62537443 | Msa1300850:intron | 35.0% |
!! | ACGGAGGGAGTATATATTTT+TGG | - | chr8_3:62537447-62537466 | Msa1300850:intron | 35.0% |
!!! | ATTTTTGGTGTAGATCCCTA+AGG | - | chr8_3:62537462-62537481 | Msa1300850:intron | 35.0% |
ACAGTTGTTGGTATGAATGA+AGG | + | chr8_3:62537488-62537507 | None:intergenic | 35.0% | |
TCATACCAACAACTGTCAAT+TGG | - | chr8_3:62537492-62537511 | Msa1300850:intron | 35.0% | |
CATACCAACAACTGTCAATT+GGG | - | chr8_3:62537493-62537512 | Msa1300850:intron | 35.0% | |
ATCAATGCTTTGTACAGAGA+TGG | + | chr8_3:62537609-62537628 | None:intergenic | 35.0% | |
AGTATATAGTAAACTCACGG+CGG | + | chr8_3:62537881-62537900 | None:intergenic | 35.0% | |
TAAACTACGTGGCTATGATA+TGG | + | chr8_3:62538004-62538023 | None:intergenic | 35.0% | |
! | TCACAGAGAAGCTTTTAGTA+CGG | - | chr8_3:62538329-62538348 | Msa1300850:intron | 35.0% |
ATCAGCCCAAAATGAATATG+AGG | + | chr8_3:62538462-62538481 | None:intergenic | 35.0% | |
! | TATTCATTTTGGGCTGATGT+TGG | - | chr8_3:62538464-62538483 | Msa1300850:intron | 35.0% |
! | TCCTGACTTTTCATGAGTTA+AGG | - | chr8_3:62538739-62538758 | Msa1300850:intron | 35.0% |
TCCTTAACTCATGAAAAGTC+AGG | + | chr8_3:62538743-62538762 | None:intergenic | 35.0% | |
ACCGCTTACTACTTGTTTAA+TGG | - | chr8_3:62538814-62538833 | Msa1300850:CDS | 35.0% | |
GAAACTGATAAGGATGACAA+GGG | + | chr8_3:62538875-62538894 | None:intergenic | 35.0% | |
AGAAACTGATAAGGATGACA+AGG | + | chr8_3:62538876-62538895 | None:intergenic | 35.0% | |
! | CACAACATGCTTTCCTTTTC+AGG | + | chr8_3:62535687-62535706 | None:intergenic | 40.0% |
GACTGCAAAAGAAAAGTCCA+GGG | + | chr8_3:62535810-62535829 | None:intergenic | 40.0% | |
TGACTGCAAAAGAAAAGTCC+AGG | + | chr8_3:62535811-62535830 | None:intergenic | 40.0% | |
AAAGTCATACCCTCTCATCA+AGG | - | chr8_3:62535836-62535855 | Msa1300850:intron | 40.0% | |
AATACACACACACACTCACA+TGG | - | chr8_3:62535865-62535884 | Msa1300850:intron | 40.0% | |
ATCAAAACTAGCAAGCTCAG+TGG | + | chr8_3:62535982-62536001 | None:intergenic | 40.0% | |
TAGGTCATATAGTAGCCAAG+AGG | + | chr8_3:62536119-62536138 | None:intergenic | 40.0% | |
TGAGAAGGTGGAATGATCAA+GGG | + | chr8_3:62536188-62536207 | None:intergenic | 40.0% | |
TTGAGAAGGTGGAATGATCA+AGG | + | chr8_3:62536189-62536208 | None:intergenic | 40.0% | |
GGACCTGATCTTGAAAAATG+AGG | + | chr8_3:62536231-62536250 | None:intergenic | 40.0% | |
!! | AGGTTGATTTGACTTGATGC+AGG | - | chr8_3:62536428-62536447 | Msa1300850:CDS | 40.0% |
GAAATCAAAGAAGCCTAGCT+AGG | + | chr8_3:62536661-62536680 | None:intergenic | 40.0% | |
! | AGCTAGGCTTCTTTGATTTC+TGG | - | chr8_3:62536661-62536680 | Msa1300850:intron | 40.0% |
! | ATTTTCCAGAAACCCTAGCT+AGG | + | chr8_3:62536694-62536713 | None:intergenic | 40.0% |
! | TTTTATGGCGGCTTACTTAC+AGG | + | chr8_3:62536844-62536863 | None:intergenic | 40.0% |
GAAGGTAATACCCAAAGCAA+AGG | + | chr8_3:62536962-62536981 | None:intergenic | 40.0% | |
CCGGTTTAATTGACCTACTT+TGG | - | chr8_3:62537238-62537257 | Msa1300850:intron | 40.0% | |
TGGTATGAATGAAGGCCTTA+GGG | + | chr8_3:62537480-62537499 | None:intergenic | 40.0% | |
TTGGTATGAATGAAGGCCTT+AGG | + | chr8_3:62537481-62537500 | None:intergenic | 40.0% | |
TATACTCTGGATTCATGCAG+TGG | + | chr8_3:62537767-62537786 | None:intergenic | 40.0% | |
ACTGCATGAATCCAGAGTAT+AGG | - | chr8_3:62537766-62537785 | Msa1300850:intron | 40.0% | |
CTAGTTCGAATCCTATACTC+TGG | + | chr8_3:62537780-62537799 | None:intergenic | 40.0% | |
GCAATCCTATCGTTGCATTT+GGG | + | chr8_3:62537810-62537829 | None:intergenic | 40.0% | |
TGCAATCCTATCGTTGCATT+TGG | + | chr8_3:62537811-62537830 | None:intergenic | 40.0% | |
AACCCTTTCCTCAGTAACAT+GGG | + | chr8_3:62537853-62537872 | None:intergenic | 40.0% | |
GAGCAACAATCAAGCTAAGA+TGG | - | chr8_3:62538488-62538507 | Msa1300850:intron | 40.0% | |
!! | TGAGAAGCGTTTGATGTCTA+CGG | - | chr8_3:62538619-62538638 | Msa1300850:intron | 40.0% |
GATGATCCGGAATCCAAATT+TGG | - | chr8_3:62538918-62538937 | Msa1300850:five_prime_UTR | 40.0% | |
! | GACTAGCCAAATTTGGATTC+CGG | + | chr8_3:62538927-62538946 | None:intergenic | 40.0% |
CAGCTAGACATGTCTCTACA+AGG | + | chr8_3:62535362-62535381 | None:intergenic | 45.0% | |
AGACATGTCTAGCTGTAGCA+TGG | - | chr8_3:62535367-62535386 | Msa1300850:three_prime_UTR | 45.0% | |
ATGTAGCAGAGTTGTTCAGC+AGG | + | chr8_3:62535401-62535420 | None:intergenic | 45.0% | |
TTCTCTCTTTCTGGGCTTGA+TGG | - | chr8_3:62535757-62535776 | Msa1300850:CDS | 45.0% | |
CAAGGCATATAGAGAAAGGG+AGG | - | chr8_3:62535926-62535945 | Msa1300850:intron | 45.0% | |
AGAAAGGGAGGACAAAGTGA+AGG | - | chr8_3:62535938-62535957 | Msa1300850:intron | 45.0% | |
GAAATAGTGACCGTTCGATG+TGG | - | chr8_3:62536477-62536496 | Msa1300850:intron | 45.0% | |
GTGGTCACTGCACAAATCTA+TGG | - | chr8_3:62536496-62536515 | Msa1300850:intron | 45.0% | |
ACTGTCATGGCAAGATGTTC+AGG | - | chr8_3:62536548-62536567 | Msa1300850:intron | 45.0% | |
TTCTGGATCCTAACCTAGCT+AGG | - | chr8_3:62536678-62536697 | Msa1300850:intron | 45.0% | |
TCTGGATCCTAACCTAGCTA+GGG | - | chr8_3:62536679-62536698 | Msa1300850:intron | 45.0% | |
AGCTACTGCCTAACTAGCTA+GGG | + | chr8_3:62536811-62536830 | None:intergenic | 45.0% | |
!! | TCAGTATGGTTTGGCTTGGT+GGG | + | chr8_3:62536913-62536932 | None:intergenic | 45.0% |
!! | TTCAGTATGGTTTGGCTTGG+TGG | + | chr8_3:62536914-62536933 | None:intergenic | 45.0% |
GTAGGTCAATTAAACCGGGA+CGG | + | chr8_3:62537236-62537255 | None:intergenic | 45.0% | |
! | ATGGGTCAGTTATTTCGGGA+CGG | - | chr8_3:62537428-62537447 | Msa1300850:intron | 45.0% |
CTAGCCCAATTGACAGTTGT+TGG | + | chr8_3:62537500-62537519 | None:intergenic | 45.0% | |
CAACAACTGTCAATTGGGCT+AGG | - | chr8_3:62537498-62537517 | Msa1300850:intron | 45.0% | |
CACCCATGTTACTGAGGAAA+GGG | - | chr8_3:62537848-62537867 | Msa1300850:intron | 45.0% | |
CAACCCTTTCCTCAGTAACA+TGG | + | chr8_3:62537854-62537873 | None:intergenic | 45.0% | |
TATGCAGGGAAGAGATTCAG+AGG | - | chr8_3:62538280-62538299 | Msa1300850:intron | 45.0% | |
GGAAGAGATTCAGAGGATCA+AGG | - | chr8_3:62538287-62538306 | Msa1300850:intron | 45.0% | |
GCTTCTCTGTGACTGATATC+AGG | + | chr8_3:62538321-62538340 | None:intergenic | 45.0% | |
!!! | ATATTTTTTATAATAAAGAT+TGG | + | chr8_3:62537110-62537129 | None:intergenic | 5.0% |
!!! | TATTTTATATTTAAATAGAT+AGG | + | chr8_3:62537922-62537941 | None:intergenic | 5.0% |
GAGTCAAGTCTCAATCTCCC+TGG | - | chr8_3:62535790-62535809 | Msa1300850:intron | 50.0% | |
TGTGCAGTGACCACATCGAA+CGG | + | chr8_3:62536490-62536509 | None:intergenic | 50.0% | |
CCATGACAGTGACTGAAACG+CGG | + | chr8_3:62536538-62536557 | None:intergenic | 50.0% | |
CCAGAAACCCTAGCTAGGTT+AGG | + | chr8_3:62536689-62536708 | None:intergenic | 50.0% | |
CCTAACCTAGCTAGGGTTTC+TGG | - | chr8_3:62536686-62536705 | Msa1300850:intron | 50.0% | |
TGAGCTAGCCCTAGCTAGTT+AGG | - | chr8_3:62536800-62536819 | Msa1300850:intron | 50.0% | |
CAGCTACTGCCTAACTAGCT+AGG | + | chr8_3:62536812-62536831 | None:intergenic | 50.0% | |
TATGGCGGCTTACTTACAGG+TGG | + | chr8_3:62536841-62536860 | None:intergenic | 50.0% | |
!! | ATGGTTTGGCTTGGTGGGTT+AGG | + | chr8_3:62536908-62536927 | None:intergenic | 50.0% |
!! | ACTACTAGCTAGGGGGTGTT+TGG | + | chr8_3:62537052-62537071 | None:intergenic | 50.0% |
GTTTATTACTCCCTCCGTCC+CGG | - | chr8_3:62537219-62537238 | Msa1300850:intron | 50.0% | |
GTCAATTAAACCGGGACGGA+GGG | + | chr8_3:62537232-62537251 | None:intergenic | 50.0% | |
! | GTCAGTTATTTCGGGACGGA+GGG | - | chr8_3:62537432-62537451 | Msa1300850:intron | 50.0% |
TCTGGATTCATGCAGTGGCT+AGG | + | chr8_3:62537762-62537781 | None:intergenic | 50.0% | |
CCTATCGTTGCATTTGGGAG+TGG | + | chr8_3:62537805-62537824 | None:intergenic | 50.0% | |
CCACTCCCAAATGCAACGAT+AGG | - | chr8_3:62537802-62537821 | Msa1300850:intron | 50.0% | |
ACCAACCACCCATGTTACTG+AGG | - | chr8_3:62537842-62537861 | Msa1300850:intron | 50.0% | |
TCCTCAGTAACATGGGTGGT+TGG | + | chr8_3:62537846-62537865 | None:intergenic | 50.0% | |
CCTTTCCTCAGTAACATGGG+TGG | + | chr8_3:62537850-62537869 | None:intergenic | 50.0% | |
CCACCCATGTTACTGAGGAA+AGG | - | chr8_3:62537847-62537866 | Msa1300850:intron | 50.0% | |
AATTTCCAGCTCCCGAGAAG+AGG | - | chr8_3:62538117-62538136 | Msa1300850:intron | 50.0% | |
AGGTACACGTTGCCTCTTCT+CGG | + | chr8_3:62538132-62538151 | None:intergenic | 50.0% | |
GGGAGGACAAAGTGAAGGTG+TGG | - | chr8_3:62535943-62535962 | Msa1300850:intron | 55.0% | |
TGACAGTGACTGAAACGCGG+CGG | + | chr8_3:62536535-62536554 | None:intergenic | 55.0% | |
CCGCGTTTCAGTCACTGTCA+TGG | - | chr8_3:62536535-62536554 | Msa1300850:intron | 55.0% | |
!! | CTAGCTAGGGCTAGCTCATC+AGG | + | chr8_3:62536798-62536817 | None:intergenic | 55.0% |
GGTCAATTAAACCGGGACGG+AGG | + | chr8_3:62537233-62537252 | None:intergenic | 55.0% | |
! | GGTCAGTTATTTCGGGACGG+AGG | - | chr8_3:62537431-62537450 | Msa1300850:intron | 55.0% |
GGTACACGTTGCCTCTTCTC+GGG | + | chr8_3:62538131-62538150 | None:intergenic | 55.0% | |
!! | AGGGGGTGTTTGGCTGGATG+AGG | + | chr8_3:62537042-62537061 | None:intergenic | 60.0% |
!! | CTAGCTAGGGGGTGTTTGGC+TGG | + | chr8_3:62537048-62537067 | None:intergenic | 60.0% |
CGTTGCCTCTTCTCGGGAGC+TGG | + | chr8_3:62538125-62538144 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_3 | gene | 62535269 | 62538960 | 62535269 | ID=Msa1300850;Name=Msa1300850 |
chr8_3 | mRNA | 62535269 | 62538960 | 62535269 | ID=Msa1300850-mRNA-1;Parent=Msa1300850;Name=Msa1300850-mRNA-1;_AED=0.06;_eAED=0.06;_QI=102|1|1|1|1|1|7|299|189 |
chr8_3 | exon | 62535269 | 62535615 | 62535269 | ID=Msa1300850-mRNA-1:exon:18595;Parent=Msa1300850-mRNA-1 |
chr8_3 | exon | 62535714 | 62535782 | 62535714 | ID=Msa1300850-mRNA-1:exon:18594;Parent=Msa1300850-mRNA-1 |
chr8_3 | exon | 62535867 | 62535942 | 62535867 | ID=Msa1300850-mRNA-1:exon:18593;Parent=Msa1300850-mRNA-1 |
chr8_3 | exon | 62536055 | 62536103 | 62536055 | ID=Msa1300850-mRNA-1:exon:18592;Parent=Msa1300850-mRNA-1 |
chr8_3 | exon | 62536347 | 62536473 | 62536347 | ID=Msa1300850-mRNA-1:exon:18591;Parent=Msa1300850-mRNA-1 |
chr8_3 | exon | 62537660 | 62537779 | 62537660 | ID=Msa1300850-mRNA-1:exon:18590;Parent=Msa1300850-mRNA-1 |
chr8_3 | exon | 62538778 | 62538960 | 62538778 | ID=Msa1300850-mRNA-1:exon:18589;Parent=Msa1300850-mRNA-1 |
chr8_3 | five_prime_UTR | 62538859 | 62538960 | 62538859 | ID=Msa1300850-mRNA-1:five_prime_utr;Parent=Msa1300850-mRNA-1 |
chr8_3 | CDS | 62538778 | 62538858 | 62538778 | ID=Msa1300850-mRNA-1:cds;Parent=Msa1300850-mRNA-1 |
chr8_3 | CDS | 62537660 | 62537779 | 62537660 | ID=Msa1300850-mRNA-1:cds;Parent=Msa1300850-mRNA-1 |
chr8_3 | CDS | 62536347 | 62536473 | 62536347 | ID=Msa1300850-mRNA-1:cds;Parent=Msa1300850-mRNA-1 |
chr8_3 | CDS | 62536055 | 62536103 | 62536055 | ID=Msa1300850-mRNA-1:cds;Parent=Msa1300850-mRNA-1 |
chr8_3 | CDS | 62535867 | 62535942 | 62535867 | ID=Msa1300850-mRNA-1:cds;Parent=Msa1300850-mRNA-1 |
chr8_3 | CDS | 62535714 | 62535782 | 62535714 | ID=Msa1300850-mRNA-1:cds;Parent=Msa1300850-mRNA-1 |
chr8_3 | CDS | 62535568 | 62535615 | 62535568 | ID=Msa1300850-mRNA-1:cds;Parent=Msa1300850-mRNA-1 |
chr8_3 | three_prime_UTR | 62535269 | 62535567 | 62535269 | ID=Msa1300850-mRNA-1:three_prime_utr;Parent=Msa1300850-mRNA-1 |
Gene Sequence |
Protein sequence |