AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1300850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1300850 MtrunA17_Chr4g0063931 95.812 191 6 1 1 189 1 191 9.83e-137 379
Msa1300850 MtrunA17_Chr2g0322221 56.667 180 67 4 5 173 2 181 3.50e-60 186
Msa1300850 MtrunA17_Chr4g0011841 53.403 191 63 4 14 184 25 209 2.08e-54 172
Msa1300850 MtrunA17_Chr4g0025361 56.647 173 61 6 5 173 2 164 4.67e-53 167
Msa1300850 MtrunA17_Chr4g0056521 54.971 171 59 4 8 163 14 181 1.82e-50 162
Msa1300850 MtrunA17_Chr5g0413381 49.686 159 58 4 12 156 12 162 1.59e-45 149
Msa1300850 MtrunA17_Chr5g0419871 41.830 153 82 2 5 155 8 155 5.38e-32 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1300850 AT2G26580.2 75.301 166 35 2 7 172 4 163 7.16e-88 255
Msa1300850 AT2G26580.1 75.301 166 35 2 7 172 4 163 7.16e-88 255
Msa1300850 AT1G08465.1 53.631 179 60 5 5 171 2 169 5.45e-56 175
Msa1300850 AT2G45190.1 54.802 177 63 6 4 163 14 190 2.31e-54 172
Msa1300850 AT4G00180.1 50.811 185 57 4 12 165 23 204 1.47e-47 155
Msa1300850 AT4G00180.2 48.864 176 56 4 21 165 1 173 2.84e-39 133
Msa1300850 AT1G23420.1 47.205 161 71 3 13 159 20 180 1.05e-38 132
Msa1300850 AT1G23420.2 47.205 161 71 3 13 159 51 211 3.06e-38 132
Msa1300850 AT2G45190.2 92.982 57 4 0 107 163 70 126 4.44e-34 119
Msa1300850 AT1G69180.1 42.069 145 78 2 11 155 18 156 4.05e-32 114

Find 50 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCGCTTACTACTTGTTTAA+TGG 0.111264 8_3:-62535393 Msa1300850:three_prime_UTR
TATAATAGACTAGCCAAATT+TGG 0.202022 8_3:+62535276 None:intergenic
TGCAATCCTATCGTTGCATT+TGG 0.296610 8_3:+62536399 None:intergenic
GATGATCCGGAATCCAAATT+TGG 0.301410 8_3:-62535289 Msa1300850:three_prime_UTR
GACTAGCCAAATTTGGATTC+CGG 0.350145 8_3:+62535283 None:intergenic
GCTTCTCTGTGACTGATATC+AGG 0.363234 8_3:+62535889 None:intergenic
GCAATCCTATCGTTGCATTT+GGG 0.399881 8_3:+62536400 None:intergenic
ACTGTCATGGCAAGATGTTC+AGG 0.423195 8_3:-62537659 Msa1300850:intron
GTGGTCACTGCACAAATCTA+TGG 0.424333 8_3:-62537711 Msa1300850:CDS
AGGTACACGTTGCCTCTTCT+CGG 0.458670 8_3:+62536078 None:intergenic
ATCAGCCCAAAATGAATATG+AGG 0.476928 8_3:+62535748 None:intergenic
CACCCATGTTACTGAGGAAA+GGG 0.483814 8_3:-62536359 Msa1300850:CDS
ATTAAAGATAGAAACTGATA+AGG 0.484078 8_3:+62535325 None:intergenic
GAGCAACAATCAAGCTAAGA+TGG 0.499438 8_3:-62535719 Msa1300850:CDS
TCCTCAGTAACATGGGTGGT+TGG 0.501150 8_3:+62536364 None:intergenic
ACTGCATGAATCCAGAGTAT+AGG 0.501971 8_3:-62536441 Msa1300850:CDS
GGTACACGTTGCCTCTTCTC+GGG 0.503039 8_3:+62536079 None:intergenic
CAACCCTTTCCTCAGTAACA+TGG 0.504380 8_3:+62536356 None:intergenic
TTGTTCATAAGATGTTAACT+AGG 0.512933 8_3:-62535534 Msa1300850:three_prime_UTR
TGAGAAGCGTTTGATGTCTA+CGG 0.515736 8_3:-62535588 Msa1300850:CDS
ATGTAGCAGAGTTGTTCAGC+AGG 0.519727 8_3:+62538809 None:intergenic
ATATAGATAGATAGATGATC+CGG 0.525158 8_3:-62535302 Msa1300850:three_prime_UTR
TCCTTAACTCATGAAAAGTC+AGG 0.525284 8_3:+62535467 None:intergenic
CCTATCGTTGCATTTGGGAG+TGG 0.533061 8_3:+62536405 None:intergenic
ACAATATTGCAAAAGTTGCA+AGG 0.540036 8_3:+62538785 None:intergenic
AATTTCCAGCTCCCGAGAAG+AGG 0.540719 8_3:-62536090 Msa1300850:intron
AAATCTATGGTCTGTAAACA+TGG 0.552321 8_3:-62537698 Msa1300850:CDS
CAGCTAGACATGTCTCTACA+AGG 0.553900 8_3:+62538848 None:intergenic
CCGCGTTTCAGTCACTGTCA+TGG 0.556178 8_3:-62537672 Msa1300850:CDS
TCTGGATTCATGCAGTGGCT+AGG 0.562771 8_3:+62536448 None:intergenic
CTAGTTCGAATCCTATACTC+TGG 0.567724 8_3:+62536430 None:intergenic
GGAAGAGATTCAGAGGATCA+AGG 0.576711 8_3:-62535920 Msa1300850:CDS
CAATATTGCAAAAGTTGCAA+GGG 0.579397 8_3:+62538786 None:intergenic
CCACCCATGTTACTGAGGAA+AGG 0.581614 8_3:-62536360 Msa1300850:CDS
AGAAACTGATAAGGATGACA+AGG 0.582761 8_3:+62535334 None:intergenic
ATGAACTGATTATAAGCAGA+AGG 0.586762 8_3:+62536058 None:intergenic
CCACTCCCAAATGCAACGAT+AGG 0.592244 8_3:-62536405 Msa1300850:CDS
AGACATGTCTAGCTGTAGCA+TGG 0.594915 8_3:-62538840 Msa1300850:exon
ATTTCAAACAAGCTACTGCA+TGG 0.595371 8_3:+62537748 None:intergenic
TCCATTAAACAAGTAGTAAG+CGG 0.601542 8_3:+62535392 None:intergenic
TATGCAGGGAAGAGATTCAG+AGG 0.621557 8_3:-62535927 Msa1300850:intron
AACCCTTTCCTCAGTAACAT+GGG 0.626838 8_3:+62536357 None:intergenic
TATACTCTGGATTCATGCAG+TGG 0.629931 8_3:+62536443 None:intergenic
TGTGCAGTGACCACATCGAA+CGG 0.632060 8_3:+62537720 None:intergenic
ACCAACCACCCATGTTACTG+AGG 0.669098 8_3:-62536365 Msa1300850:CDS
GAAATAGTGACCGTTCGATG+TGG 0.670282 8_3:-62537730 Msa1300850:CDS
CCTTTCCTCAGTAACATGGG+TGG 0.674444 8_3:+62536360 None:intergenic
GAAACTGATAAGGATGACAA+GGG 0.679298 8_3:+62535335 None:intergenic
CCATGACAGTGACTGAAACG+CGG 0.691630 8_3:+62537672 None:intergenic
TGACAGTGACTGAAACGCGG+CGG 0.753574 8_3:+62537675 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGAAAAATGTATAAATAA+AGG - chr8_3:62537275-62537294 Msa1300850:intron 10.0%
!!! ATTATTTCTTTATTTTTTAG+TGG - chr8_3:62538427-62538446 Msa1300850:intron 10.0%
!!! TTATTTCTTTATTTTTTAGT+GGG - chr8_3:62538428-62538447 Msa1300850:intron 10.0%
!! TAATGATTGAAAAATTAAAT+TGG + chr8_3:62538536-62538555 None:intergenic 10.0%
!!! TGATTATTTTTATTATATTC+AGG - chr8_3:62538592-62538611 Msa1300850:intron 10.0%
!!! TTTTTATTTTAATTGCAAGA+AGG - chr8_3:62535549-62535568 Msa1300850:exon 15.0%
!! TAAACAAGAGAAAATTAATT+AGG + chr8_3:62536138-62536157 None:intergenic 15.0%
!!! TGGATTTTTTTTTTTTTTTG+TGG - chr8_3:62536274-62536293 Msa1300850:intron 15.0%
!!! GGATTTTTTTTTTTTTTTGT+GGG - chr8_3:62536275-62536294 Msa1300850:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr8_3:62537340-62537359 Msa1300850:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr8_3:62537341-62537360 Msa1300850:intron 15.0%
!! TTTAAATAGATAGGAAAAAA+AGG + chr8_3:62537913-62537932 None:intergenic 15.0%
!!! TCATAATTTTATATATATGC+AGG - chr8_3:62538265-62538284 Msa1300850:intron 15.0%
!!! CATAATTTTATATATATGCA+GGG - chr8_3:62538266-62538285 Msa1300850:intron 15.0%
!!! ATATACTTGATAGTTTTCTT+TGG - chr8_3:62535593-62535612 Msa1300850:CDS 20.0%
!!! ATATTTTAATTCTCTCTTTC+TGG - chr8_3:62535748-62535767 Msa1300850:CDS 20.0%
!!! TATTTTAATTCTCTCTTTCT+GGG - chr8_3:62535749-62535768 Msa1300850:CDS 20.0%
!!! AGTTTTGATGATAAACATAA+TGG - chr8_3:62535993-62536012 Msa1300850:intron 20.0%
!!! TATCATTTAGTGATTTGTTT+TGG + chr8_3:62536038-62536057 None:intergenic 20.0%
!! TGTTTAAACTTAAACATACA+AGG - chr8_3:62536152-62536171 Msa1300850:intron 20.0%
!! TAATTAATTACTACTAGCTA+GGG + chr8_3:62537061-62537080 None:intergenic 20.0%
!! ATAATTAATTACTACTAGCT+AGG + chr8_3:62537062-62537081 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG - chr8_3:62537300-62537319 Msa1300850:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr8_3:62537410-62537429 Msa1300850:intron 20.0%
!! ATCAATGAAACAATAAAGTA+AGG + chr8_3:62537727-62537746 None:intergenic 20.0%
!! AATTTAGAAAATAAACTACG+TGG + chr8_3:62538015-62538034 None:intergenic 20.0%
!!! GTATATATAGTTGATTCAAT+TGG - chr8_3:62538211-62538230 Msa1300850:intron 20.0%
!!! ATTTTCCTCATATTCATTTT+GGG - chr8_3:62538454-62538473 Msa1300850:intron 20.0%
!! ATTAAAGATAGAAACTGATA+AGG + chr8_3:62538885-62538904 None:intergenic 20.0%
! AAAACTCCTTATAGTTTACT+TGG - chr8_3:62535473-62535492 Msa1300850:three_prime_UTR 25.0%
! TGAATGAATTCCTTTATACT+TGG + chr8_3:62535661-62535680 None:intergenic 25.0%
!!! ATTCTTTATTTTCTACCTCT+TGG - chr8_3:62536101-62536120 Msa1300850:intron 25.0%
! GCTAGTTAGTAATTAATCAA+AGG - chr8_3:62536408-62536427 Msa1300850:CDS 25.0%
!! AAAATCGAAGTATCTTAGTT+AGG - chr8_3:62536728-62536747 Msa1300850:intron 25.0%
!!! AAATAGGTTTGTTTTTATGG+CGG + chr8_3:62536856-62536875 None:intergenic 25.0%
!!! GGAAAATAGGTTTGTTTTTA+TGG + chr8_3:62536859-62536878 None:intergenic 25.0%
! AGTCTATGAAAAAGGAAAAT+AGG + chr8_3:62536872-62536891 None:intergenic 25.0%
!! AAAACATTTTCAGTATGGTT+TGG + chr8_3:62536922-62536941 None:intergenic 25.0%
!! TAAGCAAAACATTTTCAGTA+TGG + chr8_3:62536927-62536946 None:intergenic 25.0%
! AATTAATTACTACTAGCTAG+GGG + chr8_3:62537060-62537079 None:intergenic 25.0%
! TGTATAAATAAAGGAGAAAG+TGG - chr8_3:62537284-62537303 Msa1300850:intron 25.0%
! GAAAGTGGAATATATTGTAT+TGG - chr8_3:62537299-62537318 Msa1300850:intron 25.0%
!! TTGAAATGAGTCAGTTATTT+TGG - chr8_3:62537387-62537406 Msa1300850:intron 25.0%
!!! TGAAATGAGTCAGTTATTTT+GGG - chr8_3:62537388-62537407 Msa1300850:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr8_3:62537409-62537428 Msa1300850:intron 25.0%
! ATGAAACAATAAAGTAAGGA+AGG + chr8_3:62537723-62537742 None:intergenic 25.0%
!!! TTGTTTCATTGATTTTCTTC+AGG - chr8_3:62537734-62537753 Msa1300850:CDS 25.0%
!! CATTTTCCTCATATTCATTT+TGG - chr8_3:62538453-62538472 Msa1300850:intron 25.0%
! TTGTTCATAAGATGTTAACT+AGG - chr8_3:62538673-62538692 Msa1300850:intron 25.0%
! ATATAGATAGATAGATGATC+CGG - chr8_3:62538905-62538924 Msa1300850:five_prime_UTR 25.0%
!! TATAATAGACTAGCCAAATT+TGG + chr8_3:62538934-62538953 None:intergenic 25.0%
CAATATTGCAAAAGTTGCAA+GGG + chr8_3:62535424-62535443 None:intergenic 30.0%
ACAATATTGCAAAAGTTGCA+AGG + chr8_3:62535425-62535444 None:intergenic 30.0%
! CTTTTGCAATATTGTTCTTG+CGG - chr8_3:62535430-62535449 Msa1300850:three_prime_UTR 30.0%
TCAGATCCAAGTAAACTATA+AGG + chr8_3:62535482-62535501 None:intergenic 30.0%
ATATATATGTAGCATGCAAG+AGG + chr8_3:62535512-62535531 None:intergenic 30.0%
!! TGATAGTTTTCTTTGGTCTT+TGG - chr8_3:62535600-62535619 Msa1300850:intron 30.0%
GTGTACATATCCAAGTATAA+AGG - chr8_3:62535648-62535667 Msa1300850:intron 30.0%
AATTCATTCAGATCCTGAAA+AGG - chr8_3:62535671-62535690 Msa1300850:intron 30.0%
! ATTTGATAACCTTGATGAGA+GGG + chr8_3:62535848-62535867 None:intergenic 30.0%
! TATTTGATAACCTTGATGAG+AGG + chr8_3:62535849-62535868 None:intergenic 30.0%
GAAAGAAAGAGAAAGAGAAA+GGG + chr8_3:62535897-62535916 None:intergenic 30.0%
TGAAAGAAAGAGAAAGAGAA+AGG + chr8_3:62535898-62535917 None:intergenic 30.0%
CTTTCTTTCAAGCTAAAACA+AGG - chr8_3:62535908-62535927 Msa1300850:CDS 30.0%
AAAACAAGGCATATAGAGAA+AGG - chr8_3:62535922-62535941 Msa1300850:CDS 30.0%
AAACAAGGCATATAGAGAAA+GGG - chr8_3:62535923-62535942 Msa1300850:CDS 30.0%
TAAAGAATAGAGAAGAAGAG+AGG + chr8_3:62536089-62536108 None:intergenic 30.0%
! TCTTTGAAAAAGAGTTGAGA+AGG + chr8_3:62536203-62536222 None:intergenic 30.0%
!!! AATCCTCATTTTTCAAGATC+AGG - chr8_3:62536225-62536244 Msa1300850:intron 30.0%
!! TCACATTTCACACTTGTTAT+GGG + chr8_3:62536252-62536271 None:intergenic 30.0%
! ATCACATTTCACACTTGTTA+TGG + chr8_3:62536253-62536272 None:intergenic 30.0%
ACACACACAAAAAAAGTCAA+CGG + chr8_3:62536336-62536355 None:intergenic 30.0%
AAATCTATGGTCTGTAAACA+TGG - chr8_3:62536509-62536528 Msa1300850:intron 30.0%
AAAATAGATCTATCCTAGCT+AGG - chr8_3:62536645-62536664 Msa1300850:intron 30.0%
ATTAATTACTACTAGCTAGG+GGG + chr8_3:62537059-62537078 None:intergenic 30.0%
AGAAAATGGGTCAGTTATTT+CGG - chr8_3:62537423-62537442 Msa1300850:intron 30.0%
!! CTTGTTAAGTTGGAAATACT+AGG + chr8_3:62537662-62537681 None:intergenic 30.0%
ACAGTTCTTTCTTGTTAAGT+TGG + chr8_3:62537672-62537691 None:intergenic 30.0%
! GAGAGTATATAGTAAACTCA+CGG + chr8_3:62537884-62537903 None:intergenic 30.0%
! TAGTATTTCTATGCTCGTTA+AGG + chr8_3:62538047-62538066 None:intergenic 30.0%
ATGAACTGATTATAAGCAGA+AGG + chr8_3:62538152-62538171 None:intergenic 30.0%
TCCATTAAACAAGTAGTAAG+CGG + chr8_3:62538818-62538837 None:intergenic 30.0%
GAAGAAGAAGAAGAAGAAGA+AGG + chr8_3:62535300-62535319 None:intergenic 35.0%
TTGAAAAAGAGTTGAGAAGG+TGG + chr8_3:62536200-62536219 None:intergenic 35.0%
AACAAGTGTGAAATGTGATG+TGG - chr8_3:62536254-62536273 Msa1300850:intron 35.0%
ATTTCAAACAAGCTACTGCA+TGG + chr8_3:62536462-62536481 None:intergenic 35.0%
TTCTGACGAGTCTATGAAAA+AGG + chr8_3:62536880-62536899 None:intergenic 35.0%
!! ATTTTCAGTATGGTTTGGCT+TGG + chr8_3:62536917-62536936 None:intergenic 35.0%
! AAAGACTTTTGCCTTTGCTT+TGG - chr8_3:62536948-62536967 Msa1300850:intron 35.0%
! AAGACTTTTGCCTTTGCTTT+GGG - chr8_3:62536949-62536968 Msa1300850:intron 35.0%
! ACACATCAAATCAGTTCTGA+AGG + chr8_3:62536980-62536999 None:intergenic 35.0%
!! TCAGAACTGATTTGATGTGT+AGG - chr8_3:62536980-62536999 Msa1300850:intron 35.0%
TGATGTGTAGGAAAAGTTCA+AGG - chr8_3:62536992-62537011 Msa1300850:intron 35.0%
CAAAGTAGGTCAATTAAACC+GGG + chr8_3:62537240-62537259 None:intergenic 35.0%
CCAAAGTAGGTCAATTAAAC+CGG + chr8_3:62537241-62537260 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG + chr8_3:62537254-62537273 None:intergenic 35.0%
! GAAAATGGGTCAGTTATTTC+GGG - chr8_3:62537424-62537443 Msa1300850:intron 35.0%
!! ACGGAGGGAGTATATATTTT+TGG - chr8_3:62537447-62537466 Msa1300850:intron 35.0%
!!! ATTTTTGGTGTAGATCCCTA+AGG - chr8_3:62537462-62537481 Msa1300850:intron 35.0%
ACAGTTGTTGGTATGAATGA+AGG + chr8_3:62537488-62537507 None:intergenic 35.0%
TCATACCAACAACTGTCAAT+TGG - chr8_3:62537492-62537511 Msa1300850:intron 35.0%
CATACCAACAACTGTCAATT+GGG - chr8_3:62537493-62537512 Msa1300850:intron 35.0%
ATCAATGCTTTGTACAGAGA+TGG + chr8_3:62537609-62537628 None:intergenic 35.0%
AGTATATAGTAAACTCACGG+CGG + chr8_3:62537881-62537900 None:intergenic 35.0%
TAAACTACGTGGCTATGATA+TGG + chr8_3:62538004-62538023 None:intergenic 35.0%
! TCACAGAGAAGCTTTTAGTA+CGG - chr8_3:62538329-62538348 Msa1300850:intron 35.0%
ATCAGCCCAAAATGAATATG+AGG + chr8_3:62538462-62538481 None:intergenic 35.0%
! TATTCATTTTGGGCTGATGT+TGG - chr8_3:62538464-62538483 Msa1300850:intron 35.0%
! TCCTGACTTTTCATGAGTTA+AGG - chr8_3:62538739-62538758 Msa1300850:intron 35.0%
TCCTTAACTCATGAAAAGTC+AGG + chr8_3:62538743-62538762 None:intergenic 35.0%
ACCGCTTACTACTTGTTTAA+TGG - chr8_3:62538814-62538833 Msa1300850:CDS 35.0%
GAAACTGATAAGGATGACAA+GGG + chr8_3:62538875-62538894 None:intergenic 35.0%
AGAAACTGATAAGGATGACA+AGG + chr8_3:62538876-62538895 None:intergenic 35.0%
! CACAACATGCTTTCCTTTTC+AGG + chr8_3:62535687-62535706 None:intergenic 40.0%
GACTGCAAAAGAAAAGTCCA+GGG + chr8_3:62535810-62535829 None:intergenic 40.0%
TGACTGCAAAAGAAAAGTCC+AGG + chr8_3:62535811-62535830 None:intergenic 40.0%
AAAGTCATACCCTCTCATCA+AGG - chr8_3:62535836-62535855 Msa1300850:intron 40.0%
AATACACACACACACTCACA+TGG - chr8_3:62535865-62535884 Msa1300850:intron 40.0%
ATCAAAACTAGCAAGCTCAG+TGG + chr8_3:62535982-62536001 None:intergenic 40.0%
TAGGTCATATAGTAGCCAAG+AGG + chr8_3:62536119-62536138 None:intergenic 40.0%
TGAGAAGGTGGAATGATCAA+GGG + chr8_3:62536188-62536207 None:intergenic 40.0%
TTGAGAAGGTGGAATGATCA+AGG + chr8_3:62536189-62536208 None:intergenic 40.0%
GGACCTGATCTTGAAAAATG+AGG + chr8_3:62536231-62536250 None:intergenic 40.0%
!! AGGTTGATTTGACTTGATGC+AGG - chr8_3:62536428-62536447 Msa1300850:CDS 40.0%
GAAATCAAAGAAGCCTAGCT+AGG + chr8_3:62536661-62536680 None:intergenic 40.0%
! AGCTAGGCTTCTTTGATTTC+TGG - chr8_3:62536661-62536680 Msa1300850:intron 40.0%
! ATTTTCCAGAAACCCTAGCT+AGG + chr8_3:62536694-62536713 None:intergenic 40.0%
! TTTTATGGCGGCTTACTTAC+AGG + chr8_3:62536844-62536863 None:intergenic 40.0%
GAAGGTAATACCCAAAGCAA+AGG + chr8_3:62536962-62536981 None:intergenic 40.0%
CCGGTTTAATTGACCTACTT+TGG - chr8_3:62537238-62537257 Msa1300850:intron 40.0%
TGGTATGAATGAAGGCCTTA+GGG + chr8_3:62537480-62537499 None:intergenic 40.0%
TTGGTATGAATGAAGGCCTT+AGG + chr8_3:62537481-62537500 None:intergenic 40.0%
TATACTCTGGATTCATGCAG+TGG + chr8_3:62537767-62537786 None:intergenic 40.0%
ACTGCATGAATCCAGAGTAT+AGG - chr8_3:62537766-62537785 Msa1300850:intron 40.0%
CTAGTTCGAATCCTATACTC+TGG + chr8_3:62537780-62537799 None:intergenic 40.0%
GCAATCCTATCGTTGCATTT+GGG + chr8_3:62537810-62537829 None:intergenic 40.0%
TGCAATCCTATCGTTGCATT+TGG + chr8_3:62537811-62537830 None:intergenic 40.0%
AACCCTTTCCTCAGTAACAT+GGG + chr8_3:62537853-62537872 None:intergenic 40.0%
GAGCAACAATCAAGCTAAGA+TGG - chr8_3:62538488-62538507 Msa1300850:intron 40.0%
!! TGAGAAGCGTTTGATGTCTA+CGG - chr8_3:62538619-62538638 Msa1300850:intron 40.0%
GATGATCCGGAATCCAAATT+TGG - chr8_3:62538918-62538937 Msa1300850:five_prime_UTR 40.0%
! GACTAGCCAAATTTGGATTC+CGG + chr8_3:62538927-62538946 None:intergenic 40.0%
CAGCTAGACATGTCTCTACA+AGG + chr8_3:62535362-62535381 None:intergenic 45.0%
AGACATGTCTAGCTGTAGCA+TGG - chr8_3:62535367-62535386 Msa1300850:three_prime_UTR 45.0%
ATGTAGCAGAGTTGTTCAGC+AGG + chr8_3:62535401-62535420 None:intergenic 45.0%
TTCTCTCTTTCTGGGCTTGA+TGG - chr8_3:62535757-62535776 Msa1300850:CDS 45.0%
CAAGGCATATAGAGAAAGGG+AGG - chr8_3:62535926-62535945 Msa1300850:intron 45.0%
AGAAAGGGAGGACAAAGTGA+AGG - chr8_3:62535938-62535957 Msa1300850:intron 45.0%
GAAATAGTGACCGTTCGATG+TGG - chr8_3:62536477-62536496 Msa1300850:intron 45.0%
GTGGTCACTGCACAAATCTA+TGG - chr8_3:62536496-62536515 Msa1300850:intron 45.0%
ACTGTCATGGCAAGATGTTC+AGG - chr8_3:62536548-62536567 Msa1300850:intron 45.0%
TTCTGGATCCTAACCTAGCT+AGG - chr8_3:62536678-62536697 Msa1300850:intron 45.0%
TCTGGATCCTAACCTAGCTA+GGG - chr8_3:62536679-62536698 Msa1300850:intron 45.0%
AGCTACTGCCTAACTAGCTA+GGG + chr8_3:62536811-62536830 None:intergenic 45.0%
!! TCAGTATGGTTTGGCTTGGT+GGG + chr8_3:62536913-62536932 None:intergenic 45.0%
!! TTCAGTATGGTTTGGCTTGG+TGG + chr8_3:62536914-62536933 None:intergenic 45.0%
GTAGGTCAATTAAACCGGGA+CGG + chr8_3:62537236-62537255 None:intergenic 45.0%
! ATGGGTCAGTTATTTCGGGA+CGG - chr8_3:62537428-62537447 Msa1300850:intron 45.0%
CTAGCCCAATTGACAGTTGT+TGG + chr8_3:62537500-62537519 None:intergenic 45.0%
CAACAACTGTCAATTGGGCT+AGG - chr8_3:62537498-62537517 Msa1300850:intron 45.0%
CACCCATGTTACTGAGGAAA+GGG - chr8_3:62537848-62537867 Msa1300850:intron 45.0%
CAACCCTTTCCTCAGTAACA+TGG + chr8_3:62537854-62537873 None:intergenic 45.0%
TATGCAGGGAAGAGATTCAG+AGG - chr8_3:62538280-62538299 Msa1300850:intron 45.0%
GGAAGAGATTCAGAGGATCA+AGG - chr8_3:62538287-62538306 Msa1300850:intron 45.0%
GCTTCTCTGTGACTGATATC+AGG + chr8_3:62538321-62538340 None:intergenic 45.0%
!!! ATATTTTTTATAATAAAGAT+TGG + chr8_3:62537110-62537129 None:intergenic 5.0%
!!! TATTTTATATTTAAATAGAT+AGG + chr8_3:62537922-62537941 None:intergenic 5.0%
GAGTCAAGTCTCAATCTCCC+TGG - chr8_3:62535790-62535809 Msa1300850:intron 50.0%
TGTGCAGTGACCACATCGAA+CGG + chr8_3:62536490-62536509 None:intergenic 50.0%
CCATGACAGTGACTGAAACG+CGG + chr8_3:62536538-62536557 None:intergenic 50.0%
CCAGAAACCCTAGCTAGGTT+AGG + chr8_3:62536689-62536708 None:intergenic 50.0%
CCTAACCTAGCTAGGGTTTC+TGG - chr8_3:62536686-62536705 Msa1300850:intron 50.0%
TGAGCTAGCCCTAGCTAGTT+AGG - chr8_3:62536800-62536819 Msa1300850:intron 50.0%
CAGCTACTGCCTAACTAGCT+AGG + chr8_3:62536812-62536831 None:intergenic 50.0%
TATGGCGGCTTACTTACAGG+TGG + chr8_3:62536841-62536860 None:intergenic 50.0%
!! ATGGTTTGGCTTGGTGGGTT+AGG + chr8_3:62536908-62536927 None:intergenic 50.0%
!! ACTACTAGCTAGGGGGTGTT+TGG + chr8_3:62537052-62537071 None:intergenic 50.0%
GTTTATTACTCCCTCCGTCC+CGG - chr8_3:62537219-62537238 Msa1300850:intron 50.0%
GTCAATTAAACCGGGACGGA+GGG + chr8_3:62537232-62537251 None:intergenic 50.0%
! GTCAGTTATTTCGGGACGGA+GGG - chr8_3:62537432-62537451 Msa1300850:intron 50.0%
TCTGGATTCATGCAGTGGCT+AGG + chr8_3:62537762-62537781 None:intergenic 50.0%
CCTATCGTTGCATTTGGGAG+TGG + chr8_3:62537805-62537824 None:intergenic 50.0%
CCACTCCCAAATGCAACGAT+AGG - chr8_3:62537802-62537821 Msa1300850:intron 50.0%
ACCAACCACCCATGTTACTG+AGG - chr8_3:62537842-62537861 Msa1300850:intron 50.0%
TCCTCAGTAACATGGGTGGT+TGG + chr8_3:62537846-62537865 None:intergenic 50.0%
CCTTTCCTCAGTAACATGGG+TGG + chr8_3:62537850-62537869 None:intergenic 50.0%
CCACCCATGTTACTGAGGAA+AGG - chr8_3:62537847-62537866 Msa1300850:intron 50.0%
AATTTCCAGCTCCCGAGAAG+AGG - chr8_3:62538117-62538136 Msa1300850:intron 50.0%
AGGTACACGTTGCCTCTTCT+CGG + chr8_3:62538132-62538151 None:intergenic 50.0%
GGGAGGACAAAGTGAAGGTG+TGG - chr8_3:62535943-62535962 Msa1300850:intron 55.0%
TGACAGTGACTGAAACGCGG+CGG + chr8_3:62536535-62536554 None:intergenic 55.0%
CCGCGTTTCAGTCACTGTCA+TGG - chr8_3:62536535-62536554 Msa1300850:intron 55.0%
!! CTAGCTAGGGCTAGCTCATC+AGG + chr8_3:62536798-62536817 None:intergenic 55.0%
GGTCAATTAAACCGGGACGG+AGG + chr8_3:62537233-62537252 None:intergenic 55.0%
! GGTCAGTTATTTCGGGACGG+AGG - chr8_3:62537431-62537450 Msa1300850:intron 55.0%
GGTACACGTTGCCTCTTCTC+GGG + chr8_3:62538131-62538150 None:intergenic 55.0%
!! AGGGGGTGTTTGGCTGGATG+AGG + chr8_3:62537042-62537061 None:intergenic 60.0%
!! CTAGCTAGGGGGTGTTTGGC+TGG + chr8_3:62537048-62537067 None:intergenic 60.0%
CGTTGCCTCTTCTCGGGAGC+TGG + chr8_3:62538125-62538144 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 62535269 62538960 62535269 ID=Msa1300850;Name=Msa1300850
chr8_3 mRNA 62535269 62538960 62535269 ID=Msa1300850-mRNA-1;Parent=Msa1300850;Name=Msa1300850-mRNA-1;_AED=0.06;_eAED=0.06;_QI=102|1|1|1|1|1|7|299|189
chr8_3 exon 62535269 62535615 62535269 ID=Msa1300850-mRNA-1:exon:18595;Parent=Msa1300850-mRNA-1
chr8_3 exon 62535714 62535782 62535714 ID=Msa1300850-mRNA-1:exon:18594;Parent=Msa1300850-mRNA-1
chr8_3 exon 62535867 62535942 62535867 ID=Msa1300850-mRNA-1:exon:18593;Parent=Msa1300850-mRNA-1
chr8_3 exon 62536055 62536103 62536055 ID=Msa1300850-mRNA-1:exon:18592;Parent=Msa1300850-mRNA-1
chr8_3 exon 62536347 62536473 62536347 ID=Msa1300850-mRNA-1:exon:18591;Parent=Msa1300850-mRNA-1
chr8_3 exon 62537660 62537779 62537660 ID=Msa1300850-mRNA-1:exon:18590;Parent=Msa1300850-mRNA-1
chr8_3 exon 62538778 62538960 62538778 ID=Msa1300850-mRNA-1:exon:18589;Parent=Msa1300850-mRNA-1
chr8_3 five_prime_UTR 62538859 62538960 62538859 ID=Msa1300850-mRNA-1:five_prime_utr;Parent=Msa1300850-mRNA-1
chr8_3 CDS 62538778 62538858 62538778 ID=Msa1300850-mRNA-1:cds;Parent=Msa1300850-mRNA-1
chr8_3 CDS 62537660 62537779 62537660 ID=Msa1300850-mRNA-1:cds;Parent=Msa1300850-mRNA-1
chr8_3 CDS 62536347 62536473 62536347 ID=Msa1300850-mRNA-1:cds;Parent=Msa1300850-mRNA-1
chr8_3 CDS 62536055 62536103 62536055 ID=Msa1300850-mRNA-1:cds;Parent=Msa1300850-mRNA-1
chr8_3 CDS 62535867 62535942 62535867 ID=Msa1300850-mRNA-1:cds;Parent=Msa1300850-mRNA-1
chr8_3 CDS 62535714 62535782 62535714 ID=Msa1300850-mRNA-1:cds;Parent=Msa1300850-mRNA-1
chr8_3 CDS 62535568 62535615 62535568 ID=Msa1300850-mRNA-1:cds;Parent=Msa1300850-mRNA-1
chr8_3 three_prime_UTR 62535269 62535567 62535269 ID=Msa1300850-mRNA-1:three_prime_utr;Parent=Msa1300850-mRNA-1
Gene Sequence

>Msa1300850

ATGTCTAGCTGTAGCATGGATGTTGCACCTGCTGAACAACTCTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGAAATAGTGACCGTTCGATGTGGTCACTGCACAAATCTATGGTCTGTAAACATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGCACCTAGCCACTGCATGAATCCAGAGTATAGGATTCGAACTAGCTCCACTCCCAAATGCAACGATAGGATTGCAATGCGTTCTGCACCAACCACCCATGTTACTGAGGAAAGGGTTGTTAACCGCCCTCCCGAGAAGAGGCAACGTGTACCTTCTGCTTATAATCAGTTCATCAAGGAAGAGATTCAGAGGATCAAGGCTAATAATCCTGATATCAGTCACAGAGAAGCTTTTAGTACGGCTGCAAAGAACTGGGCACATTTTCCTCATATTCATTTTGGGCTGATGTTGGAGAGCAACAATCAAGCTAAGATGGAGACTGTCTCTGAGAAGCGTTTGATGTCTACGGCTGCGCTAATGAACAAATGA

Protein sequence

>Msa1300850

MSSCSMDVAPAEQLCYIPCNFCNIVLAVSVPCSSLFEIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQAPSHCMNPEYRIRTSSTPKCNDRIAMRSAPTTHVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQAKMETVSEKRLMSTAALMNK*