Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1214730 | XP_003609353.2 | 96.581 | 117 | 4 | 0 | 1 | 117 | 75 | 191 | 1.14e-77 | 237 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1214730 | sp|Q8GW46|YAB5_ARATH | 76.531 | 98 | 18 | 1 | 3 | 100 | 71 | 163 | 7.24e-48 | 153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1214730 | A0A396IM32 | 96.581 | 117 | 4 | 0 | 1 | 117 | 75 | 191 | 5.45e-78 | 237 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1214730 | TF | C2C2-YABBY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0059960 | Msa1214730 | -0.804771 | 1.841069e-49 | -8.615850e-47 |
| Msa0094060 | Msa1214730 | 0.838329 | 3.068543e-57 | -8.615850e-47 |
| Msa0099830 | Msa1214730 | 0.820323 | 7.289923e-53 | -8.615850e-47 |
| Msa0617650 | Msa1214730 | 0.855464 | 6.199924e-62 | -8.615850e-47 |
| Msa0621770 | Msa1214730 | 0.815522 | 8.855216e-52 | -8.615850e-47 |
| Msa0634270 | Msa1214730 | 0.804342 | 2.261951e-49 | -8.615850e-47 |
| Msa0640390 | Msa1214730 | 0.811944 | 5.434005e-51 | -8.615850e-47 |
| Msa0640880 | Msa1214730 | 0.801553 | 8.528908e-49 | -8.615850e-47 |
| Msa0642910 | Msa1214730 | 0.800590 | 1.342048e-48 | -8.615850e-47 |
| Msa0656950 | Msa1214730 | 0.843977 | 1.005177e-58 | -8.615850e-47 |
| Msa0700610 | Msa1214730 | 0.840171 | 1.021307e-57 | -8.615850e-47 |
| Msa0723150 | Msa1214730 | 0.810904 | 9.139342e-51 | -8.615850e-47 |
| Msa0778060 | Msa1214730 | 0.818904 | 1.536878e-52 | -8.615850e-47 |
| Msa0821490 | Msa1214730 | 0.811140 | 8.125726e-51 | -8.615850e-47 |
| Msa0184070 | Msa1214730 | 0.817855 | 2.654913e-52 | -8.615850e-47 |
| Msa0207180 | Msa1214730 | 0.802318 | 5.938967e-49 | -8.615850e-47 |
| Msa0224700 | Msa1214730 | 0.875161 | 3.832656e-68 | -8.615850e-47 |
| Msa0230400 | Msa1214730 | 0.817886 | 2.613083e-52 | -8.615850e-47 |
| Msa0382290 | Msa1214730 | 0.822006 | 2.982923e-53 | -8.615850e-47 |
| Msa0392410 | Msa1214730 | 0.834058 | 3.731803e-56 | -8.615850e-47 |
| Msa0392450 | Msa1214730 | 0.829765 | 4.285531e-55 | -8.615850e-47 |
| Msa0392480 | Msa1214730 | 0.820422 | 6.918393e-53 | -8.615850e-47 |
| Msa0418480 | Msa1214730 | 0.822273 | 2.587639e-53 | -8.615850e-47 |
| Msa0421790 | Msa1214730 | 0.856218 | 3.733371e-62 | -8.615850e-47 |
| Msa0429270 | Msa1214730 | 0.825516 | 4.493162e-54 | -8.615850e-47 |
| Msa0431800 | Msa1214730 | 0.817570 | 3.079362e-52 | -8.615850e-47 |
| Msa0465860 | Msa1214730 | 0.807700 | 4.446037e-50 | -8.615850e-47 |
| Msa0467890 | Msa1214730 | 0.851870 | 6.697696e-61 | -8.615850e-47 |
| Msa0467970 | Msa1214730 | 0.855778 | 5.019173e-62 | -8.615850e-47 |
| Msa0988030 | Msa1214730 | 0.819714 | 1.004635e-52 | -8.615850e-47 |
| Msa1049440 | Msa1214730 | 0.800391 | 1.473342e-48 | -8.615850e-47 |
| Msa0265780 | Msa1214730 | 0.839496 | 1.530702e-57 | -8.615850e-47 |
| Msa0274780 | Msa1214730 | 0.817709 | 2.865454e-52 | -8.615850e-47 |
| Msa0295520 | Msa1214730 | 0.815755 | 7.859447e-52 | -8.615850e-47 |
| Msa0303780 | Msa1214730 | 0.855204 | 7.379500e-62 | -8.615850e-47 |
| Msa0315480 | Msa1214730 | 0.813021 | 3.160581e-51 | -8.615850e-47 |
| Msa0331780 | Msa1214730 | 0.808825 | 2.560040e-50 | -8.615850e-47 |
| Msa0358230 | Msa1214730 | 0.813209 | 2.874572e-51 | -8.615850e-47 |
| Msa1129150 | Msa1214730 | 0.809613 | 1.735273e-50 | -8.615850e-47 |
| Msa1129920 | Msa1214730 | 0.814276 | 1.673081e-51 | -8.615850e-47 |
| Msa1143380 | Msa1214730 | 0.848935 | 4.462117e-60 | -8.615850e-47 |
| Msa1168840 | Msa1214730 | 0.801851 | 7.409473e-49 | -8.615850e-47 |
| Msa1178470 | Msa1214730 | 0.842986 | 1.849482e-58 | -8.615850e-47 |
| Msa1208510 | Msa1214730 | 0.848004 | 8.075915e-60 | -8.615850e-47 |
| Msa1214730 | Msa1214870 | 0.989438 | 4.038189e-178 | -8.615850e-47 |
| Msa1214730 | Msa1232860 | 0.839305 | 1.716003e-57 | -8.615850e-47 |
| Msa1214730 | Msa1258810 | 0.825984 | 3.478264e-54 | -8.615850e-47 |
| Msa1214730 | Msa1275290 | 0.858460 | 8.115056e-63 | -8.615850e-47 |
| Msa1214730 | Msa1300850 | 0.900251 | 8.831259e-78 | -8.615850e-47 |
| Msa1214730 | Msa1313460 | 0.829645 | 4.584307e-55 | -8.615850e-47 |
| Msa1214730 | Msa1330240 | 0.836968 | 6.854969e-57 | -8.615850e-47 |
| Msa1214730 | Msa1369860 | 0.850196 | 1.985903e-60 | -8.615850e-47 |
| Msa1214730 | Msa1417650 | 0.822567 | 2.210780e-53 | -8.615850e-47 |
| Msa1214730 | Msa1421810 | 0.805716 | 1.167253e-49 | -8.615850e-47 |
| Msa1214730 | Msa1435050 | 0.818074 | 2.369053e-52 | -8.615850e-47 |
| Msa1214730 | Msa1439680 | 0.818891 | 1.547144e-52 | -8.615850e-47 |
| Msa0487560 | Msa1214730 | 0.837596 | 4.735093e-57 | -8.615850e-47 |
| Msa0487620 | Msa1214730 | 0.842415 | 2.621687e-58 | -8.615850e-47 |
| Msa0510230 | Msa1214730 | 0.818522 | 1.875630e-52 | -8.615850e-47 |
| Msa0511480 | Msa1214730 | 0.811894 | 5.571452e-51 | -8.615850e-47 |
| Msa0514280 | Msa1214730 | 0.870682 | 1.213304e-66 | -8.615850e-47 |
| Msa0520730 | Msa1214730 | 0.806861 | 6.697885e-50 | -8.615850e-47 |
| Msa0524210 | Msa1214730 | 0.818501 | 1.896286e-52 | -8.615850e-47 |
| Msa0542030 | Msa1214730 | 0.805711 | 1.169983e-49 | -8.615850e-47 |
| Msa0547050 | Msa1214730 | 0.840821 | 6.902650e-58 | -8.615850e-47 |
| Msa0564150 | Msa1214730 | 0.832574 | 8.744446e-56 | -8.615850e-47 |
| Msa0571070 | Msa1214730 | 0.805248 | 1.463239e-49 | -8.615850e-47 |
| Msa0594180 | Msa1214730 | 0.813824 | 2.104788e-51 | -8.615850e-47 |
| Msa0601780 | Msa1214730 | 0.827917 | 1.200655e-54 | -8.615850e-47 |
| Msa0855490 | Msa1214730 | 0.811490 | 6.822367e-51 | -8.615850e-47 |
| Msa0886880 | Msa1214730 | 0.834906 | 2.285832e-56 | -8.615850e-47 |
| Msa0923910 | Msa1214730 | 0.801337 | 9.444672e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1214730 | MtrunA17_Chr4g0063931 | 96.581 | 117 | 4 | 0 | 1 | 117 | 75 | 191 | 1.05e-81 | 237 |
| Msa1214730 | MtrunA17_Chr2g0322221 | 86.154 | 65 | 9 | 0 | 37 | 101 | 117 | 181 | 5.66e-38 | 126 |
| Msa1214730 | MtrunA17_Chr4g0025361 | 78.462 | 65 | 9 | 1 | 37 | 101 | 105 | 164 | 6.76e-31 | 108 |
| Msa1214730 | MtrunA17_Chr4g0011841 | 63.736 | 91 | 31 | 1 | 3 | 91 | 96 | 186 | 1.09e-30 | 108 |
| Msa1214730 | MtrunA17_Chr4g0056521 | 88.462 | 52 | 6 | 0 | 40 | 91 | 130 | 181 | 3.16e-29 | 105 |
| Msa1214730 | MtrunA17_Chr5g0413381 | 78.431 | 51 | 11 | 0 | 34 | 84 | 112 | 162 | 3.71e-25 | 94.0 |
| Msa1214730 | MtrunA17_Chr5g0419871 | 69.388 | 49 | 15 | 0 | 35 | 83 | 107 | 155 | 9.35e-18 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1214730 | AT2G26580.2 | 76.531 | 98 | 18 | 1 | 3 | 100 | 71 | 163 | 7.36e-49 | 153 |
| Msa1214730 | AT2G26580.1 | 76.531 | 98 | 18 | 1 | 3 | 100 | 71 | 163 | 7.36e-49 | 153 |
| Msa1214730 | AT1G08465.1 | 85.714 | 63 | 9 | 0 | 37 | 99 | 107 | 169 | 7.61e-36 | 121 |
| Msa1214730 | AT2G45190.2 | 92.982 | 57 | 4 | 0 | 35 | 91 | 70 | 126 | 1.04e-34 | 117 |
| Msa1214730 | AT2G45190.1 | 92.982 | 57 | 4 | 0 | 35 | 91 | 134 | 190 | 3.19e-34 | 118 |
| Msa1214730 | AT4G00180.2 | 90.741 | 54 | 5 | 0 | 40 | 93 | 120 | 173 | 2.51e-31 | 110 |
| Msa1214730 | AT4G00180.1 | 90.741 | 54 | 5 | 0 | 40 | 93 | 151 | 204 | 5.03e-31 | 110 |
| Msa1214730 | AT1G23420.1 | 74.545 | 55 | 14 | 0 | 33 | 87 | 126 | 180 | 1.59e-24 | 93.6 |
| Msa1214730 | AT1G23420.2 | 74.545 | 55 | 14 | 0 | 33 | 87 | 157 | 211 | 3.64e-24 | 93.2 |
| Msa1214730 | AT1G69180.1 | 69.388 | 49 | 15 | 0 | 35 | 83 | 108 | 156 | 4.18e-20 | 80.9 |
Find 35 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGCTTACTACTTGTTTAA+TGG | 0.130290 | 8_1:-75479959 | Msa1214730:three_prime_UTR |
| TATAATAGACTAGCCAAATT+TGG | 0.202022 | 8_1:+75479842 | None:intergenic |
| TGCAATCCTATCGTTGCATT+TGG | 0.296610 | 8_1:+75480971 | None:intergenic |
| GATGATCCGGAATCCAAATT+TGG | 0.301410 | 8_1:-75479855 | Msa1214730:three_prime_UTR |
| GACTAGCCAAATTTGGATTC+CGG | 0.350145 | 8_1:+75479849 | None:intergenic |
| GCTTCTCTGTGACTGATATC+AGG | 0.363234 | 8_1:+75480455 | None:intergenic |
| GCAATCCTATCGTTGCATTT+GGG | 0.399881 | 8_1:+75480972 | None:intergenic |
| AGGTACACGTTGCCTCTTCT+CGG | 0.458670 | 8_1:+75480650 | None:intergenic |
| ATCAGCCCAAAATGAATATG+AGG | 0.476928 | 8_1:+75480314 | None:intergenic |
| CACCCATGTTACTGAGGAAA+GGG | 0.483814 | 8_1:-75480931 | Msa1214730:CDS |
| ATTAAAGATAGAAACTGATA+AGG | 0.484078 | 8_1:+75479891 | None:intergenic |
| GAGCAACAATCAAGCTAAGA+TGG | 0.499438 | 8_1:-75480285 | Msa1214730:CDS |
| TCCTCAGTAACATGGGTGGT+TGG | 0.501150 | 8_1:+75480936 | None:intergenic |
| ACTGCATGAATCCAGAGTAT+AGG | 0.501971 | 8_1:-75481013 | Msa1214730:exon |
| GGTACACGTTGCCTCTTCTC+GGG | 0.503039 | 8_1:+75480651 | None:intergenic |
| CAACCCTTTCCTCAGTAACA+TGG | 0.504380 | 8_1:+75480928 | None:intergenic |
| TTGTTCATAAGATGTTAACT+AGG | 0.512933 | 8_1:-75480100 | Msa1214730:three_prime_UTR |
| TGAGAAGCGTTTGATGTCTA+CGG | 0.515736 | 8_1:-75480154 | Msa1214730:CDS |
| ATATAGATAGATAGATGATC+CGG | 0.525158 | 8_1:-75479868 | Msa1214730:three_prime_UTR |
| TCCTTAACTCATGAAAAGTC+AGG | 0.525284 | 8_1:+75480033 | None:intergenic |
| CCTATCGTTGCATTTGGGAG+TGG | 0.533061 | 8_1:+75480977 | None:intergenic |
| AATTTCCAGCTCCCGAGAAG+AGG | 0.540719 | 8_1:-75480662 | Msa1214730:intron |
| TCTGGATTCATGCAGTGGCT+AGG | 0.562771 | 8_1:+75481020 | None:intergenic |
| CTAGTTCGAATCCTATACTC+TGG | 0.567724 | 8_1:+75481002 | None:intergenic |
| GGAAGAGATTCAGAGGATCA+AGG | 0.576711 | 8_1:-75480486 | Msa1214730:CDS |
| CCACCCATGTTACTGAGGAA+AGG | 0.581614 | 8_1:-75480932 | Msa1214730:CDS |
| AGAAACTGATAAGGATGACA+AGG | 0.582761 | 8_1:+75479900 | None:intergenic |
| ATGAACTGATTATAAGCAGA+AGG | 0.586762 | 8_1:+75480630 | None:intergenic |
| CCACTCCCAAATGCAACGAT+AGG | 0.592244 | 8_1:-75480977 | Msa1214730:CDS |
| TATGCAGGGAAGAGATTCAG+AGG | 0.621557 | 8_1:-75480493 | Msa1214730:intron |
| AACCCTTTCCTCAGTAACAT+GGG | 0.626838 | 8_1:+75480929 | None:intergenic |
| TATACTCTGGATTCATGCAG+TGG | 0.629931 | 8_1:+75481015 | None:intergenic |
| ACCAACCACCCATGTTACTG+AGG | 0.669098 | 8_1:-75480937 | Msa1214730:CDS |
| CCTTTCCTCAGTAACATGGG+TGG | 0.674444 | 8_1:+75480932 | None:intergenic |
| GAAACTGATAAGGATGACAA+GGG | 0.679298 | 8_1:+75479901 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATTTATATATATGC+AGG | - | chr8_1:75480353-75480372 | Msa1214730:intron | 10.0% |
| !! | TTTATATTTATATATATGCA+GGG | - | chr8_1:75480354-75480373 | Msa1214730:intron | 10.0% |
| !!! | ATTATTTCTTTATTTTTTAG+TGG | - | chr8_1:75480515-75480534 | Msa1214730:intron | 10.0% |
| !!! | TTATTTCTTTATTTTTTAGT+GGG | - | chr8_1:75480516-75480535 | Msa1214730:intron | 10.0% |
| !!! | TGATTATTTTTATTATATTC+AGG | - | chr8_1:75480680-75480699 | Msa1214730:intron | 10.0% |
| !!! | TTTTATATTTATATATATGC+AGG | - | chr8_1:75480353-75480372 | Msa1214730:intron | 10.0% |
| !! | TTTATATTTATATATATGCA+GGG | - | chr8_1:75480354-75480373 | Msa1214730:intron | 10.0% |
| !!! | ATTATTTCTTTATTTTTTAG+TGG | - | chr8_1:75480515-75480534 | Msa1214730:intron | 10.0% |
| !!! | TTATTTCTTTATTTTTTAGT+GGG | - | chr8_1:75480516-75480535 | Msa1214730:intron | 10.0% |
| !!! | TGATTATTTTTATTATATTC+AGG | - | chr8_1:75480680-75480699 | Msa1214730:intron | 10.0% |
| !! | TTTAAATAGATAGGAAAAAA+AGG | + | chr8_1:75479995-75480014 | None:intergenic | 15.0% |
| !! | TTTAAATAGATAGGAAAAAA+AGG | + | chr8_1:75479995-75480014 | None:intergenic | 15.0% |
| !! | AATTTAGAAAATAAACTACG+TGG | + | chr8_1:75480097-75480116 | None:intergenic | 20.0% |
| !!! | GTATATATAGTTGATTCAAT+TGG | - | chr8_1:75480293-75480312 | Msa1214730:CDS | 20.0% |
| !!! | ATTTTCCTCATATTCATTTT+GGG | - | chr8_1:75480542-75480561 | Msa1214730:intron | 20.0% |
| !! | ATTAAAGATAGAAACTGATA+AGG | + | chr8_1:75480973-75480992 | None:intergenic | 20.0% |
| !! | AATTTAGAAAATAAACTACG+TGG | + | chr8_1:75480097-75480116 | None:intergenic | 20.0% |
| !!! | GTATATATAGTTGATTCAAT+TGG | - | chr8_1:75480293-75480312 | Msa1214730:CDS | 20.0% |
| !!! | ATTTTCCTCATATTCATTTT+GGG | - | chr8_1:75480542-75480561 | Msa1214730:intron | 20.0% |
| !! | ATTAAAGATAGAAACTGATA+AGG | + | chr8_1:75480973-75480992 | None:intergenic | 20.0% |
| !! | TAGTATTTCTATGTTCGTTA+AGG | + | chr8_1:75480129-75480148 | None:intergenic | 25.0% |
| !! | CATTTTCCTCATATTCATTT+TGG | - | chr8_1:75480541-75480560 | Msa1214730:intron | 25.0% |
| ! | TTGTTCATAAGATGTTAACT+AGG | - | chr8_1:75480761-75480780 | Msa1214730:intron | 25.0% |
| ! | ATATAGATAGATAGATGATC+CGG | - | chr8_1:75480993-75481012 | Msa1214730:CDS | 25.0% |
| !! | TATAATAGACTAGCCAAATT+TGG | + | chr8_1:75481022-75481041 | None:intergenic | 25.0% |
| !! | TAGTATTTCTATGTTCGTTA+AGG | + | chr8_1:75480129-75480148 | None:intergenic | 25.0% |
| !! | CATTTTCCTCATATTCATTT+TGG | - | chr8_1:75480541-75480560 | Msa1214730:intron | 25.0% |
| ! | TTGTTCATAAGATGTTAACT+AGG | - | chr8_1:75480761-75480780 | Msa1214730:intron | 25.0% |
| ! | ATATAGATAGATAGATGATC+CGG | - | chr8_1:75480993-75481012 | Msa1214730:CDS | 25.0% |
| !! | TATAATAGACTAGCCAAATT+TGG | + | chr8_1:75481022-75481041 | None:intergenic | 25.0% |
| ! | GAGAGTATATAGTAAACTCA+CGG | + | chr8_1:75479966-75479985 | None:intergenic | 30.0% |
| ATGAACTGATTATAAGCAGA+AGG | + | chr8_1:75480234-75480253 | None:intergenic | 30.0% | |
| ACTGCTTACTACTTGTTTAA+TGG | - | chr8_1:75480902-75480921 | Msa1214730:intron | 30.0% | |
| ! | GAGAGTATATAGTAAACTCA+CGG | + | chr8_1:75479966-75479985 | None:intergenic | 30.0% |
| ATGAACTGATTATAAGCAGA+AGG | + | chr8_1:75480234-75480253 | None:intergenic | 30.0% | |
| ACTGCTTACTACTTGTTTAA+TGG | - | chr8_1:75480902-75480921 | Msa1214730:intron | 30.0% | |
| AGTATATAGTAAACTCACGG+CGG | + | chr8_1:75479963-75479982 | None:intergenic | 35.0% | |
| TAAACTACGTGGCTATGATA+TGG | + | chr8_1:75480086-75480105 | None:intergenic | 35.0% | |
| ATCAGCCCAAAATGAATATG+AGG | + | chr8_1:75480550-75480569 | None:intergenic | 35.0% | |
| ! | TATTCATTTTGGGCTGATGT+TGG | - | chr8_1:75480552-75480571 | Msa1214730:intron | 35.0% |
| ! | TCCTGACTTTTCATGAGTTA+AGG | - | chr8_1:75480827-75480846 | Msa1214730:intron | 35.0% |
| TCCTTAACTCATGAAAAGTC+AGG | + | chr8_1:75480831-75480850 | None:intergenic | 35.0% | |
| GAAACTGATAAGGATGACAA+GGG | + | chr8_1:75480963-75480982 | None:intergenic | 35.0% | |
| AGAAACTGATAAGGATGACA+AGG | + | chr8_1:75480964-75480983 | None:intergenic | 35.0% | |
| AGTATATAGTAAACTCACGG+CGG | + | chr8_1:75479963-75479982 | None:intergenic | 35.0% | |
| TAAACTACGTGGCTATGATA+TGG | + | chr8_1:75480086-75480105 | None:intergenic | 35.0% | |
| ATCAGCCCAAAATGAATATG+AGG | + | chr8_1:75480550-75480569 | None:intergenic | 35.0% | |
| ! | TATTCATTTTGGGCTGATGT+TGG | - | chr8_1:75480552-75480571 | Msa1214730:intron | 35.0% |
| ! | TCCTGACTTTTCATGAGTTA+AGG | - | chr8_1:75480827-75480846 | Msa1214730:intron | 35.0% |
| TCCTTAACTCATGAAAAGTC+AGG | + | chr8_1:75480831-75480850 | None:intergenic | 35.0% | |
| GAAACTGATAAGGATGACAA+GGG | + | chr8_1:75480963-75480982 | None:intergenic | 35.0% | |
| AGAAACTGATAAGGATGACA+AGG | + | chr8_1:75480964-75480983 | None:intergenic | 35.0% | |
| TATACTCTGGATTCATGCAG+TGG | + | chr8_1:75479849-75479868 | None:intergenic | 40.0% | |
| ACTGCATGAATCCAGAGTAT+AGG | - | chr8_1:75479848-75479867 | Msa1214730:three_prime_UTR | 40.0% | |
| CTAGTTCGAATCCTATACTC+TGG | + | chr8_1:75479862-75479881 | None:intergenic | 40.0% | |
| GCAATCCTATCGTTGCATTT+GGG | + | chr8_1:75479892-75479911 | None:intergenic | 40.0% | |
| TGCAATCCTATCGTTGCATT+TGG | + | chr8_1:75479893-75479912 | None:intergenic | 40.0% | |
| AACCCTTTCCTCAGTAACAT+GGG | + | chr8_1:75479935-75479954 | None:intergenic | 40.0% | |
| GAGCAACAATCAAGCTAAGA+TGG | - | chr8_1:75480576-75480595 | Msa1214730:intron | 40.0% | |
| !! | TGAGAAGCGTTTGATGTCTA+CGG | - | chr8_1:75480707-75480726 | Msa1214730:intron | 40.0% |
| GATGATCCGGAATCCAAATT+TGG | - | chr8_1:75481006-75481025 | Msa1214730:CDS | 40.0% | |
| ! | GACTAGCCAAATTTGGATTC+CGG | + | chr8_1:75481015-75481034 | None:intergenic | 40.0% |
| TATACTCTGGATTCATGCAG+TGG | + | chr8_1:75479849-75479868 | None:intergenic | 40.0% | |
| ACTGCATGAATCCAGAGTAT+AGG | - | chr8_1:75479848-75479867 | Msa1214730:three_prime_UTR | 40.0% | |
| CTAGTTCGAATCCTATACTC+TGG | + | chr8_1:75479862-75479881 | None:intergenic | 40.0% | |
| GCAATCCTATCGTTGCATTT+GGG | + | chr8_1:75479892-75479911 | None:intergenic | 40.0% | |
| TGCAATCCTATCGTTGCATT+TGG | + | chr8_1:75479893-75479912 | None:intergenic | 40.0% | |
| AACCCTTTCCTCAGTAACAT+GGG | + | chr8_1:75479935-75479954 | None:intergenic | 40.0% | |
| GAGCAACAATCAAGCTAAGA+TGG | - | chr8_1:75480576-75480595 | Msa1214730:intron | 40.0% | |
| !! | TGAGAAGCGTTTGATGTCTA+CGG | - | chr8_1:75480707-75480726 | Msa1214730:intron | 40.0% |
| GATGATCCGGAATCCAAATT+TGG | - | chr8_1:75481006-75481025 | Msa1214730:CDS | 40.0% | |
| ! | GACTAGCCAAATTTGGATTC+CGG | + | chr8_1:75481015-75481034 | None:intergenic | 40.0% |
| CACCCATGTTACTGAGGAAA+GGG | - | chr8_1:75479930-75479949 | Msa1214730:three_prime_UTR | 45.0% | |
| CAACCCTTTCCTCAGTAACA+TGG | + | chr8_1:75479936-75479955 | None:intergenic | 45.0% | |
| TATGCAGGGAAGAGATTCAG+AGG | - | chr8_1:75480368-75480387 | Msa1214730:intron | 45.0% | |
| GGAAGAGATTCAGAGGATCA+AGG | - | chr8_1:75480375-75480394 | Msa1214730:intron | 45.0% | |
| GCTTCTCTGTGACTGATATC+AGG | + | chr8_1:75480409-75480428 | None:intergenic | 45.0% | |
| CACCCATGTTACTGAGGAAA+GGG | - | chr8_1:75479930-75479949 | Msa1214730:three_prime_UTR | 45.0% | |
| CAACCCTTTCCTCAGTAACA+TGG | + | chr8_1:75479936-75479955 | None:intergenic | 45.0% | |
| TATGCAGGGAAGAGATTCAG+AGG | - | chr8_1:75480368-75480387 | Msa1214730:intron | 45.0% | |
| GGAAGAGATTCAGAGGATCA+AGG | - | chr8_1:75480375-75480394 | Msa1214730:intron | 45.0% | |
| GCTTCTCTGTGACTGATATC+AGG | + | chr8_1:75480409-75480428 | None:intergenic | 45.0% | |
| !!! | TATTTTATATTTAAATAGAT+AGG | + | chr8_1:75480004-75480023 | None:intergenic | 5.0% |
| !! | TAATGATTAAAAAATTAAAT+TGG | + | chr8_1:75480624-75480643 | None:intergenic | 5.0% |
| !!! | TATTTTATATTTAAATAGAT+AGG | + | chr8_1:75480004-75480023 | None:intergenic | 5.0% |
| !! | TAATGATTAAAAAATTAAAT+TGG | + | chr8_1:75480624-75480643 | None:intergenic | 5.0% |
| TCTGGATTCATGCAGTGGCT+AGG | + | chr8_1:75479844-75479863 | None:intergenic | 50.0% | |
| CCTATCGTTGCATTTGGGAG+TGG | + | chr8_1:75479887-75479906 | None:intergenic | 50.0% | |
| CCACTCCCAAATGCAACGAT+AGG | - | chr8_1:75479884-75479903 | Msa1214730:three_prime_UTR | 50.0% | |
| ACCAACCACCCATGTTACTG+AGG | - | chr8_1:75479924-75479943 | Msa1214730:three_prime_UTR | 50.0% | |
| TCCTCAGTAACATGGGTGGT+TGG | + | chr8_1:75479928-75479947 | None:intergenic | 50.0% | |
| CCTTTCCTCAGTAACATGGG+TGG | + | chr8_1:75479932-75479951 | None:intergenic | 50.0% | |
| CCACCCATGTTACTGAGGAA+AGG | - | chr8_1:75479929-75479948 | Msa1214730:three_prime_UTR | 50.0% | |
| AATTTCCAGCTCCCGAGAAG+AGG | - | chr8_1:75480199-75480218 | Msa1214730:intron | 50.0% | |
| AGGTACACGTTGCCTCTTCT+CGG | + | chr8_1:75480214-75480233 | None:intergenic | 50.0% | |
| TCTGGATTCATGCAGTGGCT+AGG | + | chr8_1:75479844-75479863 | None:intergenic | 50.0% | |
| CCTATCGTTGCATTTGGGAG+TGG | + | chr8_1:75479887-75479906 | None:intergenic | 50.0% | |
| CCACTCCCAAATGCAACGAT+AGG | - | chr8_1:75479884-75479903 | Msa1214730:three_prime_UTR | 50.0% | |
| ACCAACCACCCATGTTACTG+AGG | - | chr8_1:75479924-75479943 | Msa1214730:three_prime_UTR | 50.0% | |
| TCCTCAGTAACATGGGTGGT+TGG | + | chr8_1:75479928-75479947 | None:intergenic | 50.0% | |
| CCTTTCCTCAGTAACATGGG+TGG | + | chr8_1:75479932-75479951 | None:intergenic | 50.0% | |
| CCACCCATGTTACTGAGGAA+AGG | - | chr8_1:75479929-75479948 | Msa1214730:three_prime_UTR | 50.0% | |
| AATTTCCAGCTCCCGAGAAG+AGG | - | chr8_1:75480199-75480218 | Msa1214730:intron | 50.0% | |
| AGGTACACGTTGCCTCTTCT+CGG | + | chr8_1:75480214-75480233 | None:intergenic | 50.0% | |
| GGTACACGTTGCCTCTTCTC+GGG | + | chr8_1:75480213-75480232 | None:intergenic | 55.0% | |
| GGTACACGTTGCCTCTTCTC+GGG | + | chr8_1:75480213-75480232 | None:intergenic | 55.0% | |
| CGTTGCCTCTTCTCGGGAGC+TGG | + | chr8_1:75480207-75480226 | None:intergenic | 65.0% | |
| CGTTGCCTCTTCTCGGGAGC+TGG | + | chr8_1:75480207-75480226 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 75479835 | 75481048 | 75479835 | ID=Msa1214730;Name=Msa1214730 |
| chr8_1 | mRNA | 75479835 | 75481048 | 75479835 | ID=Msa1214730-mRNA-1;Parent=Msa1214730;Name=Msa1214730-mRNA-1;_AED=0.06;_eAED=0.06;_QI=18|1|1|1|1|1|5|299|117 |
| chr8_1 | exon | 75479835 | 75480181 | 75479835 | ID=Msa1214730-mRNA-1:exon:25929;Parent=Msa1214730-mRNA-1 |
| chr8_1 | exon | 75480280 | 75480348 | 75480280 | ID=Msa1214730-mRNA-1:exon:25928;Parent=Msa1214730-mRNA-1 |
| chr8_1 | exon | 75480433 | 75480508 | 75480433 | ID=Msa1214730-mRNA-1:exon:25927;Parent=Msa1214730-mRNA-1 |
| chr8_1 | exon | 75480627 | 75480675 | 75480627 | ID=Msa1214730-mRNA-1:exon:25926;Parent=Msa1214730-mRNA-1 |
| chr8_1 | exon | 75480919 | 75481048 | 75480919 | ID=Msa1214730-mRNA-1:exon:25925;Parent=Msa1214730-mRNA-1 |
| chr8_1 | five_prime_UTR | 75481031 | 75481048 | 75481031 | ID=Msa1214730-mRNA-1:five_prime_utr;Parent=Msa1214730-mRNA-1 |
| chr8_1 | CDS | 75480919 | 75481030 | 75480919 | ID=Msa1214730-mRNA-1:cds;Parent=Msa1214730-mRNA-1 |
| chr8_1 | CDS | 75480627 | 75480675 | 75480627 | ID=Msa1214730-mRNA-1:cds;Parent=Msa1214730-mRNA-1 |
| chr8_1 | CDS | 75480433 | 75480508 | 75480433 | ID=Msa1214730-mRNA-1:cds;Parent=Msa1214730-mRNA-1 |
| chr8_1 | CDS | 75480280 | 75480348 | 75480280 | ID=Msa1214730-mRNA-1:cds;Parent=Msa1214730-mRNA-1 |
| chr8_1 | CDS | 75480134 | 75480181 | 75480134 | ID=Msa1214730-mRNA-1:cds;Parent=Msa1214730-mRNA-1 |
| chr8_1 | three_prime_UTR | 75479835 | 75480133 | 75479835 | ID=Msa1214730-mRNA-1:three_prime_utr;Parent=Msa1214730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
