AlfalfaGEDB | Msa1214730

M. sativa cultivar zhongmu-4 / Msa1214730

KEGG: -
GO: -
PFAM: PF04690.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1214730	XP_003609353.2	96.581	117	4	0	1	117	75	191	1.14e-77	237

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1214730	sp\|Q8GW46\|YAB5_ARATH	76.531	98	18	1	3	100	71	163	7.24e-48	153

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1214730	A0A396IM32	96.581	117	4	0	1	117	75	191	5.45e-78	237

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TFs/TRs:

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Gene ID	Type	Classification
Msa1214730	TF	C2C2-YABBY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0059960	Msa1214730	-0.804771	1.841069e-49	-8.615850e-47
Msa0094060	Msa1214730	0.838329	3.068543e-57	-8.615850e-47
Msa0099830	Msa1214730	0.820323	7.289923e-53	-8.615850e-47
Msa0184070	Msa1214730	0.817855	2.654913e-52	-8.615850e-47
Msa0207180	Msa1214730	0.802318	5.938967e-49	-8.615850e-47
Msa0224700	Msa1214730	0.875161	3.832656e-68	-8.615850e-47
Msa0230400	Msa1214730	0.817886	2.613083e-52	-8.615850e-47
Msa0265780	Msa1214730	0.839496	1.530702e-57	-8.615850e-47
Msa0274780	Msa1214730	0.817709	2.865454e-52	-8.615850e-47
Msa0295520	Msa1214730	0.815755	7.859447e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1214730	MtrunA17_Chr4g0063931	96.581	117	4	0	1	117	75	191	1.05e-81	237
Msa1214730	MtrunA17_Chr2g0322221	86.154	65	9	0	37	101	117	181	5.66e-38	126
Msa1214730	MtrunA17_Chr4g0025361	78.462	65	9	1	37	101	105	164	6.76e-31	108
Msa1214730	MtrunA17_Chr4g0011841	63.736	91	31	1	3	91	96	186	1.09e-30	108
Msa1214730	MtrunA17_Chr4g0056521	88.462	52	6	0	40	91	130	181	3.16e-29	105
Msa1214730	MtrunA17_Chr5g0413381	78.431	51	11	0	34	84	112	162	3.71e-25	94.0
Msa1214730	MtrunA17_Chr5g0419871	69.388	49	15	0	35	83	107	155	9.35e-18	74.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1214730	AT2G26580.2	76.531	98	18	1	3	100	71	163	7.36e-49	153
Msa1214730	AT2G26580.1	76.531	98	18	1	3	100	71	163	7.36e-49	153
Msa1214730	AT1G08465.1	85.714	63	9	0	37	99	107	169	7.61e-36	121
Msa1214730	AT2G45190.2	92.982	57	4	0	35	91	70	126	1.04e-34	117
Msa1214730	AT2G45190.1	92.982	57	4	0	35	91	134	190	3.19e-34	118
Msa1214730	AT4G00180.2	90.741	54	5	0	40	93	120	173	2.51e-31	110
Msa1214730	AT4G00180.1	90.741	54	5	0	40	93	151	204	5.03e-31	110
Msa1214730	AT1G23420.1	74.545	55	14	0	33	87	126	180	1.59e-24	93.6
Msa1214730	AT1G23420.2	74.545	55	14	0	33	87	157	211	3.64e-24	93.2
Msa1214730	AT1G69180.1	69.388	49	15	0	35	83	108	156	4.18e-20	80.9

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Find 35 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCCTTTCCTCAGTAACAT+GGG	0.626838	8_1:+75480929	None:intergenic
AATTTCCAGCTCCCGAGAAG+AGG	0.540719	8_1:-75480662	Msa1214730:intron
ACCAACCACCCATGTTACTG+AGG	0.669098	8_1:-75480937	Msa1214730:CDS
ACTGCATGAATCCAGAGTAT+AGG	0.501971	8_1:-75481013	Msa1214730:exon
ACTGCTTACTACTTGTTTAA+TGG	0.130290	8_1:-75479959	Msa1214730:three_prime_UTR
AGAAACTGATAAGGATGACA+AGG	0.582761	8_1:+75479900	None:intergenic
AGGTACACGTTGCCTCTTCT+CGG	0.458670	8_1:+75480650	None:intergenic
ATATAGATAGATAGATGATC+CGG	0.525158	8_1:-75479868	Msa1214730:three_prime_UTR
ATCAGCCCAAAATGAATATG+AGG	0.476928	8_1:+75480314	None:intergenic
ATGAACTGATTATAAGCAGA+AGG	0.586762	8_1:+75480630	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGAACTGATTATAAGCAGA+AGG	+	chr8_1:75480234-75480253	None:intergenic	30.0%
ACTGCTTACTACTTGTTTAA+TGG	-	chr8_1:75480902-75480921	Msa1214730:intron	30.0%
ATGAACTGATTATAAGCAGA+AGG	+	chr8_1:75480234-75480253	None:intergenic	30.0%
ACTGCTTACTACTTGTTTAA+TGG	-	chr8_1:75480902-75480921	Msa1214730:intron	30.0%
AGTATATAGTAAACTCACGG+CGG	+	chr8_1:75479963-75479982	None:intergenic	35.0%
TAAACTACGTGGCTATGATA+TGG	+	chr8_1:75480086-75480105	None:intergenic	35.0%
ATCAGCCCAAAATGAATATG+AGG	+	chr8_1:75480550-75480569	None:intergenic	35.0%
TCCTTAACTCATGAAAAGTC+AGG	+	chr8_1:75480831-75480850	None:intergenic	35.0%
GAAACTGATAAGGATGACAA+GGG	+	chr8_1:75480963-75480982	None:intergenic	35.0%
AGAAACTGATAAGGATGACA+AGG	+	chr8_1:75480964-75480983	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	75479835	75481048	75479835	ID=Msa1214730;Name=Msa1214730
chr8_1	mRNA	75479835	75481048	75479835	ID=Msa1214730-mRNA-1;Parent=Msa1214730;Name=Msa1214730-mRNA-1;_AED=0.06;_eAED=0.06;_QI=18\|1\|1\|1\|1\|1\|5\|299\|117
chr8_1	exon	75479835	75480181	75479835	ID=Msa1214730-mRNA-1:exon:25929;Parent=Msa1214730-mRNA-1
chr8_1	exon	75480280	75480348	75480280	ID=Msa1214730-mRNA-1:exon:25928;Parent=Msa1214730-mRNA-1
chr8_1	exon	75480433	75480508	75480433	ID=Msa1214730-mRNA-1:exon:25927;Parent=Msa1214730-mRNA-1
chr8_1	exon	75480627	75480675	75480627	ID=Msa1214730-mRNA-1:exon:25926;Parent=Msa1214730-mRNA-1
chr8_1	exon	75480919	75481048	75480919	ID=Msa1214730-mRNA-1:exon:25925;Parent=Msa1214730-mRNA-1
chr8_1	five_prime_UTR	75481031	75481048	75481031	ID=Msa1214730-mRNA-1:five_prime_utr;Parent=Msa1214730-mRNA-1
chr8_1	CDS	75480919	75481030	75480919	ID=Msa1214730-mRNA-1:cds;Parent=Msa1214730-mRNA-1
chr8_1	CDS	75480627	75480675	75480627	ID=Msa1214730-mRNA-1:cds;Parent=Msa1214730-mRNA-1
chr8_1	CDS	75480433	75480508	75480433	ID=Msa1214730-mRNA-1:cds;Parent=Msa1214730-mRNA-1
chr8_1	CDS	75480280	75480348	75480280	ID=Msa1214730-mRNA-1:cds;Parent=Msa1214730-mRNA-1
chr8_1	CDS	75480134	75480181	75480134	ID=Msa1214730-mRNA-1:cds;Parent=Msa1214730-mRNA-1
chr8_1	three_prime_UTR	75479835	75480133	75479835	ID=Msa1214730-mRNA-1:three_prime_utr;Parent=Msa1214730-mRNA-1

Gene Sequence	>Msa1214730 ATGAATCCAGAGTATAGGATTCGAACTAGCTCCACTCCCAAATGCAACGATAGGATTGCAATGCGTTCTGCACCAACCACCCATGTTACTGAGGAAAGGGTTGTTAACCGCCCTCCCGAGAAGAGGCAACGTGTACCTTCTGCTTATAATCAGTTCATCAAGGAAGAGATTCAGAGGATCAAGGCTAATAATCCTGATATCAGTCACAGAGAAGCTTTTAGTACAGCTGCAAAGAACTGGGCACATTTTCCTCATATTCATTTTGGGCTGATGTTGGAGAGCAACAATCAAGCTAAGATGGAGACTGTCTCTGAGAAGCGTTTGATGTCTACGGCTGCGCTAATGAACAAATGA
Protein sequence	>Msa1214730 MNPEYRIRTSSTPKCNDRIAMRSAPTTHVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQAKMETVSEKRLMSTAALMNK*