AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0554420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0554420 MtrunA17_Chr4g0040251 98.089 471 9 0 1 471 1 471 0.0 952
Msa0554420 MtrunA17_Chr4g0040261 85.408 466 67 1 1 466 34 498 0.0 816
Msa0554420 MtrunA17_Chr4g0040271 84.856 416 62 1 1 416 1 415 0.0 744
Msa0554420 MtrunA17_Chr4g0040221 64.882 467 157 4 1 464 1 463 0.0 595
Msa0554420 MtrunA17_Chr7g0217051 59.267 464 187 2 5 467 7 469 0.0 583
Msa0554420 MtrunA17_Chr4g0040001 61.373 466 173 4 1 460 1 465 0.0 569
Msa0554420 MtrunA17_Chr4g0040231 59.957 467 178 4 4 464 5 468 0.0 559
Msa0554420 MtrunA17_Chr4g0040011 61.717 431 158 4 1 425 9 438 0.0 526
Msa0554420 MtrunA17_Chr7g0248011 50.985 457 220 4 2 456 3 457 8.63e-161 463
Msa0554420 MtrunA17_Chr6g0457271 54.848 361 152 4 66 419 5 361 4.14e-140 407
Msa0554420 MtrunA17_Chr6g0457281 51.546 291 135 3 86 371 1 290 5.24e-102 306
Msa0554420 MtrunA17_Chr1g0147071 26.809 470 302 13 5 448 6 459 2.02e-45 165
Msa0554420 MtrunA17_Chr5g0393471 27.181 298 201 8 161 454 42 327 1.53e-24 104
Msa0554420 MtrunA17_Chr6g0457291 55.224 67 30 0 394 460 1 67 5.49e-18 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0554420 AT3G49190.1 27.848 474 291 14 9 448 18 474 4.30e-50 179
Msa0554420 AT5G53390.1 26.526 475 318 11 9 463 15 478 7.13e-50 177
Msa0554420 AT5G12420.1 28.205 468 294 12 9 448 7 460 1.59e-49 176
Msa0554420 AT5G16350.3 28.322 459 301 13 1 448 1 442 4.46e-48 172
Msa0554420 AT3G49200.1 28.480 467 301 13 9 448 26 486 7.18e-47 169
Msa0554420 AT5G12420.2 28.538 424 262 11 9 404 7 417 1.14e-46 168
Msa0554420 AT3G49210.1 27.447 470 300 10 9 442 26 490 4.14e-46 168
Msa0554420 AT5G16350.1 27.673 477 301 14 1 448 1 462 1.05e-45 166
Msa0554420 AT5G22490.1 28.358 469 284 18 10 448 12 458 2.39e-44 162
Msa0554420 AT1G72110.1 25.726 482 330 12 6 470 9 479 8.32e-44 160
Msa0554420 AT5G53380.1 26.154 455 301 9 9 440 9 451 9.65e-43 158
Msa0554420 AT2G38995.2 26.004 473 318 15 9 463 21 479 1.87e-39 149
Msa0554420 AT1G72110.2 25.105 478 329 12 6 470 9 470 5.82e-39 147
Msa0554420 AT5G37300.1 27.235 481 315 13 9 470 17 481 3.05e-38 145
Msa0554420 AT5G37300.4 27.235 481 315 13 9 470 35 499 3.86e-38 145
Msa0554420 AT5G16350.2 28.212 397 242 13 1 368 1 383 6.46e-37 140
Msa0554420 AT3G49210.2 27.604 384 237 10 9 356 26 404 2.72e-35 136
Msa0554420 AT5G22490.2 28.792 389 227 17 10 368 12 380 1.99e-33 130
Msa0554420 AT2G38995.3 25.899 417 278 14 65 463 7 410 3.48e-32 127
Msa0554420 AT2G38995.4 25.549 364 252 8 65 416 7 363 5.16e-29 118
Msa0554420 AT5G37300.2 27.273 374 246 9 9 368 35 396 6.28e-28 115
Msa0554420 AT5G37300.3 28.679 265 180 6 9 270 35 293 2.30e-20 92.4
Msa0554420 AT2G38995.1 22.422 223 157 6 252 463 72 289 8.04e-11 63.5

Find 191 sgRNAs with CRISPR-Local

Find 420 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATTCAATCTCTGATTT+TGG 0.127994 4_1:+51657318 Msa0554420:CDS
TATTATCAACCAAATCATTT+TGG 0.185564 4_1:-51655599 None:intergenic
GTTTAGTTTCATCAATAAAA+AGG 0.188662 4_1:+51662298 Msa0554420:three_prime_UTR
TGCTTTCCAAACAAAATCTA+AGG 0.198564 4_1:-51658128 None:intergenic
ATTATTAACATGTGCCTTTA+GGG 0.219793 4_1:-51656003 None:intergenic
TCCCAAAGGGGTTTGTCTTT+TGG 0.228493 4_1:-51657069 None:intergenic
TATTGTCCACTTGGACTTAC+TGG 0.233113 4_1:-51656663 None:intergenic
TGTAAGAAATTGTGCAAATT+TGG 0.233415 4_1:-51656079 None:intergenic
CTTATTTGATAAAAGTTAAT+AGG 0.234055 4_1:-51655473 None:intergenic
ACTTCATATCCAAGATTAAA+TGG 0.237464 4_1:-51654845 None:intergenic
GGATGAATGGTTCGGGAATT+AGG 0.242068 4_1:+51655050 Msa0554420:five_prime_UTR
TAATGCTAATTTGTGTCTTT+AGG 0.245104 4_1:-51656135 None:intergenic
TTGTAGTTTCCGACCTATTT+GGG 0.246930 4_1:-51655383 None:intergenic
AATTATTAACATGTGCCTTT+AGG 0.250498 4_1:-51656004 None:intergenic
TGAATTGAAAAGGGAGAATA+TGG 0.251715 4_1:-51657304 None:intergenic
TAATTCGAGCACCGCTTAAA+TGG 0.255953 4_1:-51655730 None:intergenic
AATGCTAATTTGTGTCTTTA+GGG 0.265152 4_1:-51656134 None:intergenic
GGCTGGCTTGGCTTAACTTT+GGG 0.275418 4_1:-51658096 None:intergenic
TATGCAAGAGATTGATAATA+AGG 0.279179 4_1:+51657937 Msa0554420:CDS
GGAACCTTAAAATGATCTTT+TGG 0.288626 4_1:-51656964 None:intergenic
TTTGTAGTTTCCGACCTATT+TGG 0.289084 4_1:-51655384 None:intergenic
ACTAAAATAGCTTATAAATA+AGG 0.310691 4_1:-51662476 None:intergenic
TCTAACTACCGATATGTTCT+TGG 0.311238 4_1:-51654874 None:intergenic
TAGTACAAGTGAGGGGCTTT+TGG 0.317022 4_1:+51655314 Msa0554420:five_prime_UTR
TAATAGGAAAGCTGCTCAAT+AGG 0.317521 4_1:-51655457 None:intergenic
TTCTCAATTCCATTTAATCT+TGG 0.322924 4_1:+51654836 Msa0554420:five_prime_UTR
AACCTAACAAGACATTATTC+AGG 0.326287 4_1:-51655099 None:intergenic
TTAAGACTCGGGCCTGGTTC+GGG 0.333109 4_1:-51655074 None:intergenic
AAGATGAAATGAACAATCTA+TGG 0.335275 4_1:+51662210 Msa0554420:exon
GGCTGATTCAAAATCTCCTT+GGG 0.340651 4_1:+51658042 Msa0554420:CDS
AAGATGATAAATCACCTATA+TGG 0.340719 4_1:+51657370 Msa0554420:CDS
ACAATAAATGATGTGATTAC+TGG 0.341873 4_1:+51657887 Msa0554420:CDS
TGTTTCATTAGAAATTGATT+TGG 0.343128 4_1:-51655501 None:intergenic
TTACTTACCTTCAAATATTA+CGG 0.345358 4_1:+51655539 Msa0554420:five_prime_UTR
CATTCGTACTTAAATTTGTA+TGG 0.350413 4_1:-51656317 None:intergenic
TTCCTGAATAATGTCTTGTT+AGG 0.357735 4_1:+51655097 Msa0554420:five_prime_UTR
TTCCACTGGCCCGATCAAAT+TGG 0.359504 4_1:-51659125 None:intergenic
TTGGTAACTTCCAATGTTCC+TGG 0.365297 4_1:-51657999 None:intergenic
ATGATGAAGTTTGAATATTA+TGG 0.371436 4_1:-51657133 None:intergenic
AATTGTGATGATTTGCGGTT+AGG 0.374258 4_1:-51657240 None:intergenic
AGACTGTGTAAAACAAATAA+TGG 0.374400 4_1:+51656479 Msa0554420:five_prime_UTR
ATTAAGACTCGGGCCTGGTT+CGG 0.375507 4_1:-51655075 None:intergenic
GATATGCAGCTGAAATTAAG+AGG 0.384094 4_1:+51658211 Msa0554420:CDS
AATAGGAAAGCTGCTCAATA+GGG 0.386509 4_1:-51655456 None:intergenic
AATGGAATTGAGAACATATA+AGG 0.387484 4_1:-51654827 None:intergenic
GCATGCCAGCACAATTTGAT+TGG 0.387959 4_1:-51656551 None:intergenic
AATCAGAGATTGAATTGAAA+AGG 0.391399 4_1:-51657314 None:intergenic
AATCTCCATTGATGCTGCTT+TGG 0.391558 4_1:-51662175 None:intergenic
TGATTCAGACAAATCATATA+CGG 0.401790 4_1:+51655639 Msa0554420:five_prime_UTR
ACCAAAAGACAAACCCCTTT+GGG 0.401857 4_1:+51657068 Msa0554420:CDS
AGGCTGGCTTGGCTTAACTT+TGG 0.403108 4_1:-51658097 None:intergenic
GTATATGATTTGTCTGAATC+AGG 0.405870 4_1:-51655637 None:intergenic
GCAGTTGCTAAACATCTATA+TGG 0.407126 4_1:+51659073 Msa0554420:CDS
AATCAGCCTTGGTCATGTCT+TGG 0.407622 4_1:-51658027 None:intergenic
TTTCATCGAGAGAGAATGAT+AGG 0.409102 4_1:-51657437 None:intergenic
CACCAAAAGACAAACCCCTT+TGG 0.410996 4_1:+51657067 Msa0554420:CDS
AGCAACCTAAATAAAATAAC+AGG 0.411301 4_1:+51655690 Msa0554420:five_prime_UTR
CAAAATCTAAGGGGTTAGAT+AGG 0.412591 4_1:-51658117 None:intergenic
TTACAGGGGATGAATGGTTC+GGG 0.415039 4_1:+51655043 Msa0554420:five_prime_UTR
GGTGAGCACGTGAGCAAACT+TGG 0.417995 4_1:+51655253 Msa0554420:five_prime_UTR
ATGCATTGCTTCTTATAAAC+CGG 0.418010 4_1:-51655147 None:intergenic
CAAACTTGGATGAATGGAAT+AGG 0.418403 4_1:+51655267 Msa0554420:five_prime_UTR
GCCAGTGGAACCTATGGCTT+TGG 0.419946 4_1:+51659138 Msa0554420:CDS
AGGTAAATCAACATTGTAAC+CGG 0.420538 4_1:+51655128 Msa0554420:five_prime_UTR
GAGGAGAAGCGTGGATTGAT+AGG 0.424660 4_1:-51656789 None:intergenic
TTTACAGGGGATGAATGGTT+CGG 0.425128 4_1:+51655042 Msa0554420:five_prime_UTR
CATAAACGTGGCTCTTGAAC+GGG 0.426416 4_1:-51656380 None:intergenic
GCTTGGCTTAACTTTGGGAT+TGG 0.427085 4_1:-51658091 None:intergenic
ATAAATTCATGCCGATCGAC+TGG 0.427881 4_1:-51655758 None:intergenic
TGGTCATGTCTTGGATTGAT+TGG 0.428689 4_1:-51658018 None:intergenic
CTAACTACCGATATGTTCTT+GGG 0.431390 4_1:-51654873 None:intergenic
ATAAAGATGGAAATATGAAA+TGG 0.432943 4_1:+51656923 Msa0554420:CDS
ATCTAAGGGGTTAGATAGGC+TGG 0.434061 4_1:-51658113 None:intergenic
AGGCTGATTCAAAATCTCCT+TGG 0.434769 4_1:+51658041 Msa0554420:CDS
GCAAGAATGTCAAATTCAAC+AGG 0.440973 4_1:+51657959 Msa0554420:CDS
ATTATTCTTGAAAATACAAA+TGG 0.443660 4_1:-51654960 None:intergenic
TGAAAACTTAGTCCCCAAAT+AGG 0.444589 4_1:+51655370 Msa0554420:five_prime_UTR
CATATCCAAAGCAGCATCAA+TGG 0.444606 4_1:+51662170 Msa0554420:CDS
TGGTGATGGTTACTCTCTCA+TGG 0.446072 4_1:+51657161 Msa0554420:CDS
CAATAAATGATGTGATTACT+GGG 0.449069 4_1:+51657888 Msa0554420:CDS
CCTTCCTCACCATTCCATAT+AGG 0.456878 4_1:-51657384 None:intergenic
TTAACAATTGTGATGATTTG+CGG 0.460575 4_1:-51657245 None:intergenic
ATAGCTTGAGAGTCATCAAT+TGG 0.464600 4_1:-51656741 None:intergenic
AACAATCTATGGAGAAAGAG+AGG 0.466969 4_1:+51662221 Msa0554420:exon
GTCTCTTTACCTCGAGAACT+AGG 0.469664 4_1:+51655561 Msa0554420:five_prime_UTR
CAGACTAACTTGTGCCCTAA+AGG 0.473505 4_1:+51655989 Msa0554420:five_prime_UTR
AGGGGTTAGATAGGCTGGCT+TGG 0.474507 4_1:-51658108 None:intergenic
ATAAAATACAAGCCTTTCAC+AGG 0.476240 4_1:-51659169 None:intergenic
GCACCGCTTAAATGGTTTCA+AGG 0.481651 4_1:-51655722 None:intergenic
ATCAGAGATTGAATTGAAAA+GGG 0.482081 4_1:-51657313 None:intergenic
TGTCAAAGATATTAATAGAA+AGG 0.483733 4_1:+51657043 Msa0554420:CDS
GAGCCACGTTTATGATCAAA+AGG 0.484061 4_1:+51656389 Msa0554420:five_prime_UTR
ATAACAATCAAGTCTAAGCT+TGG 0.484750 4_1:+51657462 Msa0554420:CDS
TTGTCATGTCCAATTTGATC+GGG 0.484819 4_1:+51659116 Msa0554420:CDS
TTTGATTGGATCCTCACATC+TGG 0.485042 4_1:-51656537 None:intergenic
GATCGGGCCAGTGGAACCTA+TGG 0.490902 4_1:+51659132 Msa0554420:CDS
TGCTTTGGATATGATTTCAA+AGG 0.491056 4_1:-51662160 None:intergenic
AATGTCAAATTCAACAGGAT+TGG 0.492379 4_1:+51657964 Msa0554420:CDS
GTTGATAATACAAGACAAGA+AGG 0.495127 4_1:+51655612 Msa0554420:five_prime_UTR
AAAGAGACCGTAATATTTGA+AGG 0.496234 4_1:-51655546 None:intergenic
CGTGAGCAAACTTGGATGAA+TGG 0.497993 4_1:+51655261 Msa0554420:five_prime_UTR
GCCAAAGCCATAGGTTCCAC+TGG 0.507030 4_1:-51659139 None:intergenic
AAAAGGGAGAATATGGTTGA+AGG 0.512885 4_1:-51657297 None:intergenic
GATAACATGGATTTCCCAAA+GGG 0.515587 4_1:-51657082 None:intergenic
GGATGGTTTGCCAAAGCCAT+AGG 0.516215 4_1:-51659148 None:intergenic
GCTTTCCAAACAAAATCTAA+GGG 0.520219 4_1:-51658127 None:intergenic
GATGAATGGAATAGGAATGT+TGG 0.520323 4_1:+51655275 Msa0554420:five_prime_UTR
AGTGCATAGATCATAATCAA+TGG 0.522959 4_1:+51656617 Msa0554420:exon
TGGTTGTTGAATCATGTGTT+TGG 0.525327 4_1:-51654940 None:intergenic
GGAAAAGACAAAGGAAGAGA+AGG 0.525790 4_1:-51657219 None:intergenic
TTGGCAAACCATCCTGTGAA+AGG 0.530246 4_1:+51659157 Msa0554420:CDS
GAATTAATGTCCCAGTCGAT+CGG 0.530469 4_1:+51655747 Msa0554420:five_prime_UTR
TCGAGGAGCACGTGAGCATG+TGG 0.531179 4_1:+51655430 Msa0554420:five_prime_UTR
GTGTAAGCAGCATTGCTTGT+TGG 0.533388 4_1:-51657111 None:intergenic
AATACAAGCCTTTCACAGGA+TGG 0.535235 4_1:-51659165 None:intergenic
GTCGGAAACTACAAACTATG+AGG 0.535543 4_1:+51655392 Msa0554420:five_prime_UTR
CTTCATCATGCACTTGGTGA+TGG 0.536861 4_1:+51657147 Msa0554420:CDS
TTCAAACTTCATCATGCACT+TGG 0.538549 4_1:+51657141 Msa0554420:CDS
GTTACAACCCAAGAACATAT+CGG 0.539028 4_1:+51654866 Msa0554420:five_prime_UTR
TCTCTTTACCTCGAGAACTA+GGG 0.542981 4_1:+51655562 Msa0554420:five_prime_UTR
CATCAAAGCAGAATAACTAA+AGG 0.543426 4_1:-51655198 None:intergenic
GTTGTCATGTCCAATTTGAT+CGG 0.545850 4_1:+51659115 Msa0554420:CDS
TCGGAAACTACAAACTATGA+GGG 0.546239 4_1:+51655393 Msa0554420:five_prime_UTR
CAAATATTATAAGCCAACAT+TGG 0.549483 4_1:-51662512 None:intergenic
GAAATATAATGAAATTGTGC+TGG 0.552134 4_1:+51656501 Msa0554420:five_prime_UTR
GGTGATGGTTACTCTCTCAT+GGG 0.557425 4_1:+51657162 Msa0554420:CDS
GAGAAATGTAGTACAAGTGA+GGG 0.559608 4_1:+51655306 Msa0554420:five_prime_UTR
TCATAAACGTGGCTCTTGAA+CGG 0.561870 4_1:-51656381 None:intergenic
AACTTAGTCCCCAAATAGGT+CGG 0.562150 4_1:+51655374 Msa0554420:five_prime_UTR
CAGGAATTAAGACTCGGGCC+TGG 0.566647 4_1:-51655080 None:intergenic
CCTATATGGAATGGTGAGGA+AGG 0.567496 4_1:+51657384 Msa0554420:CDS
AGTTCACATTCTAAACCACT+TGG 0.567838 4_1:+51662441 Msa0554420:three_prime_UTR
GATAAATCACCTATATGGAA+TGG 0.568282 4_1:+51657375 Msa0554420:CDS
AGAGGCATTAAAACTGTACA+TGG 0.568718 4_1:+51656187 Msa0554420:five_prime_UTR
AGTATTCAATGCCATTGTCT+AGG 0.569604 4_1:+51662253 Msa0554420:three_prime_UTR
TATCCTTGAAACCATTTAAG+CGG 0.571238 4_1:+51655719 Msa0554420:five_prime_UTR
CTCTTTACCTCGAGAACTAG+GGG 0.573292 4_1:+51655563 Msa0554420:five_prime_UTR
TAAATTCATGCCGATCGACT+GGG 0.573468 4_1:-51655757 None:intergenic
GTGTTGAAGTATTGTCCACT+TGG 0.573593 4_1:-51656672 None:intergenic
GTCCAATTTGATCGGGCCAG+TGG 0.573799 4_1:+51659123 Msa0554420:CDS
TTGCTAAGTACCAGGAACAT+TGG 0.575327 4_1:+51657989 Msa0554420:CDS
AAAGGGAGAATATGGTTGAA+GGG 0.579274 4_1:-51657296 None:intergenic
AAACATATGAACATAGGGGA+GGG 0.581662 4_1:-51656695 None:intergenic
AACATATGAACATAGGGGAG+GGG 0.584123 4_1:-51656694 None:intergenic
CGGGAATTAGGACCCGAACC+AGG 0.585816 4_1:+51655062 Msa0554420:five_prime_UTR
AGTCTAATACAAGAGTGTAT+CGG 0.587437 4_1:-51654899 None:intergenic
ATAGGAAAGCTGCTCAATAG+GGG 0.590262 4_1:-51655455 None:intergenic
TTGATAATACAAGACAAGAA+GGG 0.591111 4_1:+51655613 Msa0554420:five_prime_UTR
TACAAATTTAAGTACGAATG+TGG 0.592931 4_1:+51656320 Msa0554420:five_prime_UTR
TAAATTGTGATAAATGTCGC+CGG 0.593757 4_1:-51656262 None:intergenic
TATAATGTCTGGTGCACCTG+AGG 0.596961 4_1:+51659189 Msa0554420:CDS
AGGATCCAATCAAATTGTGC+TGG 0.597120 4_1:+51656546 Msa0554420:five_prime_UTR
TGATAGGTAAGAACACATGT+TGG 0.604630 4_1:-51656773 None:intergenic
TGATAACATGGATTTCCCAA+AGG 0.605124 4_1:-51657083 None:intergenic
TTGTTGGATACTTGATAACA+TGG 0.610552 4_1:-51657095 None:intergenic
GATTGGTGTTGCTAAGTACC+AGG 0.611444 4_1:+51657981 Msa0554420:CDS
TGATAATACAAGACAAGAAG+GGG 0.613226 4_1:+51655614 Msa0554420:five_prime_UTR
ATTATTCAGGAATTAAGACT+CGG 0.616267 4_1:-51655086 None:intergenic
TTATTCAGGAATTAAGACTC+GGG 0.617642 4_1:-51655085 None:intergenic
TGAGAAATGTAGTACAAGTG+AGG 0.617652 4_1:+51655305 Msa0554420:five_prime_UTR
TGTAGTTTCCGACCTATTTG+GGG 0.618935 4_1:-51655382 None:intergenic
ATAATGAAACTCCTAGACAA+TGG 0.625979 4_1:-51662264 None:intergenic
AAAAGTACGTACTATTATGG+AGG 0.629039 4_1:-51656808 None:intergenic
ATATAGGTGAGAGATAAAGA+TGG 0.633511 4_1:+51656910 Msa0554420:intron
ACTATTATGGAGGAGAAGCG+TGG 0.633661 4_1:-51656798 None:intergenic
ACAATCTATGGAGAAAGAGA+GGG 0.634533 4_1:+51662222 Msa0554420:three_prime_UTR
CTTTCCAAACAAAATCTAAG+GGG 0.635519 4_1:-51658126 None:intergenic
ACAGAAGTTCAAGTTGTGCA+TGG 0.637970 4_1:+51662131 Msa0554420:CDS
GCTGAAATTAAGAGGACATG+AGG 0.640508 4_1:+51658219 Msa0554420:CDS
ACTGAGCCAGTAAGTCCAAG+TGG 0.642613 4_1:+51656657 Msa0554420:CDS
GATAGGTTTGATAGTGCACA+AGG 0.644206 4_1:-51657420 None:intergenic
ATCACCTATATGGAATGGTG+AGG 0.649181 4_1:+51657380 Msa0554420:CDS
CGAGGAGCACGTGAGCATGT+GGG 0.649690 4_1:+51655431 Msa0554420:five_prime_UTR
AATCAAGTCTAAGCTTGGAG+TGG 0.650359 4_1:+51657467 Msa0554420:CDS
TGAATGTCACACCAGATGTG+AGG 0.650593 4_1:+51656526 Msa0554420:five_prime_UTR
GAATGGAATAGGAATGTTGG+TGG 0.651040 4_1:+51655278 Msa0554420:five_prime_UTR
CTGATTCAAAATCTCCTTGG+GGG 0.654193 4_1:+51658044 Msa0554420:CDS
TAGGAAAGCTGCTCAATAGG+GGG 0.656377 4_1:-51655454 None:intergenic
GCTGATTCAAAATCTCCTTG+GGG 0.657580 4_1:+51658043 Msa0554420:CDS
AAAACATATGAACATAGGGG+AGG 0.661494 4_1:-51656696 None:intergenic
AGGTGTTGTGAAATTCCAAG+TGG 0.663720 4_1:-51662456 None:intergenic
CAATCTATGGAGAAAGAGAG+GGG 0.669874 4_1:+51662223 Msa0554420:three_prime_UTR
TTGCGGTTAGGAAAAGACAA+AGG 0.670319 4_1:-51657228 None:intergenic
CGGAAACTACAAACTATGAG+GGG 0.671315 4_1:+51655394 Msa0554420:five_prime_UTR
CAATTGTTAACTCCTAAGAG+AGG 0.672084 4_1:+51657258 Msa0554420:CDS
GTATGGTCACACGACTGACA+TGG 0.695441 4_1:-51656300 None:intergenic
ATCAATCCAAGACATGACCA+AGG 0.700982 4_1:+51658021 Msa0554420:CDS
ATAACATGGATTTCCCAAAG+GGG 0.708600 4_1:-51657081 None:intergenic
AGAAATGTAGTACAAGTGAG+GGG 0.709035 4_1:+51655307 Msa0554420:five_prime_UTR
AATAAATGATGTGATTACTG+GGG 0.709233 4_1:+51657889 Msa0554420:CDS
TCTTTACCTCGAGAACTAGG+GGG 0.737732 4_1:+51655564 Msa0554420:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATTAAAATTCAAGT+AGG + chr4_1:51655886-51655905 Msa0554420:five_prime_UTR 10.0%
!! TAAAAATTAAAATTCAAGTA+GGG + chr4_1:51655887-51655906 Msa0554420:five_prime_UTR 10.0%
!! ATTCAAGTAAAAATAAATAA+AGG - chr4_1:51656161-51656180 None:intergenic 10.0%
!! TGTTATATAAAAAATTTGTA+AGG - chr4_1:51656857-51656876 None:intergenic 10.0%
!! TTTATATACAATTTGTATAT+TGG + chr4_1:51657499-51657518 Msa0554420:intron 10.0%
!! TAATTAAAAAACTATAACTA+AGG - chr4_1:51657645-51657664 None:intergenic 10.0%
!! AATGAATATATGAAAATTAA+AGG + chr4_1:51659521-51659540 Msa0554420:intron 10.0%
!! ATTAAATATATTAATGATCA+AGG - chr4_1:51659710-51659729 None:intergenic 10.0%
!! TTTCTTGTTAAAAAATAAAA+AGG - chr4_1:51661938-51661957 None:intergenic 10.0%
!! ATAATTCATTATTTATTGTT+TGG + chr4_1:51662348-51662367 Msa0554420:intron 10.0%
!! ATTATTCTTGAAAATACAAA+TGG - chr4_1:51654963-51654982 None:intergenic 15.0%
!! ACTATTTGTAAAAAAAACAT+AGG + chr4_1:51655232-51655251 Msa0554420:five_prime_UTR 15.0%
!! CTTATTTGATAAAAGTTAAT+AGG - chr4_1:51655476-51655495 None:intergenic 15.0%
!! AAAAAAAATCCAAAATGATT+TGG + chr4_1:51655590-51655609 Msa0554420:five_prime_UTR 15.0%
!!! AATTTCCTGTTATTTTATTT+AGG - chr4_1:51655698-51655717 None:intergenic 15.0%
!! TATACTTATTCATCTTAATT+AGG - chr4_1:51659269-51659288 None:intergenic 15.0%
!! TTCTAACTAAAAATATAGAA+TGG - chr4_1:51659624-51659643 None:intergenic 15.0%
!!! TTTTGAGTTATTTTACAAAA+GGG - chr4_1:51660503-51660522 None:intergenic 15.0%
!!! ATTTTGAGTTATTTTACAAA+AGG - chr4_1:51660504-51660523 None:intergenic 15.0%
!! AAATAACTTAGTTCAATAAA+AGG + chr4_1:51661188-51661207 Msa0554420:intron 15.0%
!! AATAACTTAGTTCAATAAAA+GGG + chr4_1:51661189-51661208 Msa0554420:intron 15.0%
!! GTACAAAATATTTAAACTAA+TGG - chr4_1:51661570-51661589 None:intergenic 15.0%
!!! TTTAGTTTCATCAATAAAAA+GGG + chr4_1:51662299-51662318 Msa0554420:three_prime_UTR 15.0%
!!! TGTATATTAATTAAGTTTTG+TGG + chr4_1:51662406-51662425 Msa0554420:intron 15.0%
!! ACTAAAATAGCTTATAAATA+AGG - chr4_1:51662479-51662498 None:intergenic 15.0%
!! TGTTTCATTAGAAATTGATT+TGG - chr4_1:51655504-51655523 None:intergenic 20.0%
!! TTACTTACCTTCAAATATTA+CGG + chr4_1:51655539-51655558 Msa0554420:five_prime_UTR 20.0%
!!! TATTATCAACCAAATCATTT+TGG - chr4_1:51655602-51655621 None:intergenic 20.0%
!!! AACTTTTGTTTTTCTATCTT+TGG - chr4_1:51655941-51655960 None:intergenic 20.0%
!! AAAAACAAAAGTTTAACAAG+AGG + chr4_1:51655948-51655967 Msa0554420:five_prime_UTR 20.0%
!!! TTTTACTTGAATGTAAAAAG+AGG + chr4_1:51656169-51656188 Msa0554420:five_prime_UTR 20.0%
!!! TTATTTTATGACAAAAGAAG+AGG + chr4_1:51656452-51656471 Msa0554420:five_prime_UTR 20.0%
!!! TTCATATGTTTTTGGATTTT+TGG + chr4_1:51656707-51656726 Msa0554420:CDS 20.0%
!!! ATAAAAAGTACGTACTATTA+TGG - chr4_1:51656814-51656833 None:intergenic 20.0%
!! ATAAAGATGGAAATATGAAA+TGG + chr4_1:51656923-51656942 Msa0554420:CDS 20.0%
!!! AAATCCAAAAGATCATTTTA+AGG + chr4_1:51656960-51656979 Msa0554420:CDS 20.0%
!! TGTCAAAGATATTAATAGAA+AGG + chr4_1:51657043-51657062 Msa0554420:CDS 20.0%
!! ATGATGAAGTTTGAATATTA+TGG - chr4_1:51657136-51657155 None:intergenic 20.0%
!!! ATATGTTCATACAATTTGTT+AGG + chr4_1:51657616-51657635 Msa0554420:intron 20.0%
!! ATATTTAAATGTGGAGAAAT+AGG + chr4_1:51657719-51657738 Msa0554420:intron 20.0%
!! TATTTAAATGTGGAGAAATA+GGG + chr4_1:51657720-51657739 Msa0554420:intron 20.0%
!!! AGTTCTAACATAATGTTTTT+TGG + chr4_1:51657856-51657875 Msa0554420:intron 20.0%
!! AAATGTATTTGCATAAAGAA+TGG + chr4_1:51658573-51658592 Msa0554420:intron 20.0%
!!! AATATTTTATCGAGTAATGT+CGG + chr4_1:51658832-51658851 Msa0554420:intron 20.0%
!! TAACGATATAGAATAGAAAT+GGG - chr4_1:51659425-51659444 None:intergenic 20.0%
!! GAATATATGAAAATTAAAGG+TGG + chr4_1:51659524-51659543 Msa0554420:intron 20.0%
!! ACGACATGTATTAAAAAAAA+TGG - chr4_1:51659590-51659609 None:intergenic 20.0%
!! ACTAAAAATATAGAATGGAA+TGG - chr4_1:51659619-51659638 None:intergenic 20.0%
!!! TAAGACAAATTTTAGTATGT+GGG - chr4_1:51659793-51659812 None:intergenic 20.0%
!!! TTAAGACAAATTTTAGTATG+TGG - chr4_1:51659794-51659813 None:intergenic 20.0%
!! TTGCAACATGTATTAAAAAA+CGG + chr4_1:51659868-51659887 Msa0554420:intron 20.0%
!! TAAATAATGTTAAACATCCA+TGG + chr4_1:51659963-51659982 Msa0554420:intron 20.0%
!! AAGTAGTAATTAATGCTAAT+TGG - chr4_1:51660209-51660228 None:intergenic 20.0%
!! CATTAATAGAAACTTTGTAT+TGG - chr4_1:51660440-51660459 None:intergenic 20.0%
!! CAATACAAAGTTTCTATTAA+TGG + chr4_1:51660438-51660457 Msa0554420:intron 20.0%
!!! AATAAATAAGAGTATGTTAG+AGG + chr4_1:51660666-51660685 Msa0554420:intron 20.0%
!!! TCAACTAACATTAATTTTTC+AGG + chr4_1:51661727-51661746 Msa0554420:intron 20.0%
!! TCAAAAGAAAACCATTTATT+AGG + chr4_1:51661809-51661828 Msa0554420:intron 20.0%
!!! CATTTCATCTTTTTTTTGTT+GGG - chr4_1:51662201-51662220 None:intergenic 20.0%
!!! TCATTTCATCTTTTTTTTGT+TGG - chr4_1:51662202-51662221 None:intergenic 20.0%
!!! GTTTAGTTTCATCAATAAAA+AGG + chr4_1:51662298-51662317 Msa0554420:three_prime_UTR 20.0%
!! TATTTATAATGTACCTCAAT+TGG + chr4_1:51662373-51662392 Msa0554420:intron 20.0%
! AATGGAATTGAGAACATATA+AGG - chr4_1:51654830-51654849 None:intergenic 25.0%
! TTCTCAATTCCATTTAATCT+TGG + chr4_1:51654836-51654855 Msa0554420:five_prime_UTR 25.0%
! ACTTCATATCCAAGATTAAA+TGG - chr4_1:51654848-51654867 None:intergenic 25.0%
!!! ATGAGTTTTGATATTGTTGT+TGG - chr4_1:51655000-51655019 None:intergenic 25.0%
!! GCAACAATTTTCTTTTTACA+GGG + chr4_1:51655028-51655047 Msa0554420:five_prime_UTR 25.0%
!! CAACAATTTTCTTTTTACAG+GGG + chr4_1:51655029-51655048 Msa0554420:five_prime_UTR 25.0%
! ATTATTCAGGAATTAAGACT+CGG - chr4_1:51655089-51655108 None:intergenic 25.0%
!! TGTCTTGTTAGGTTAAAAAA+AGG + chr4_1:51655108-51655127 Msa0554420:five_prime_UTR 25.0%
!! TTGATAATACAAGACAAGAA+GGG + chr4_1:51655613-51655632 Msa0554420:five_prime_UTR 25.0%
! TGATTCAGACAAATCATATA+CGG + chr4_1:51655639-51655658 Msa0554420:five_prime_UTR 25.0%
! AGCAACCTAAATAAAATAAC+AGG + chr4_1:51655690-51655709 Msa0554420:five_prime_UTR 25.0%
! ATTATTAACATGTGCCTTTA+GGG - chr4_1:51656006-51656025 None:intergenic 25.0%
! AATTATTAACATGTGCCTTT+AGG - chr4_1:51656007-51656026 None:intergenic 25.0%
! TGTAAGAAATTGTGCAAATT+TGG - chr4_1:51656082-51656101 None:intergenic 25.0%
!! AATGCTAATTTGTGTCTTTA+GGG - chr4_1:51656137-51656156 None:intergenic 25.0%
!! TAATGCTAATTTGTGTCTTT+AGG - chr4_1:51656138-51656157 None:intergenic 25.0%
! CATTCGTACTTAAATTTGTA+TGG - chr4_1:51656320-51656339 None:intergenic 25.0%
! TACAAATTTAAGTACGAATG+TGG + chr4_1:51656320-51656339 Msa0554420:five_prime_UTR 25.0%
! AGACTGTGTAAAACAAATAA+TGG + chr4_1:51656479-51656498 Msa0554420:five_prime_UTR 25.0%
! GAAATATAATGAAATTGTGC+TGG + chr4_1:51656501-51656520 Msa0554420:five_prime_UTR 25.0%
! TCCAAAAACATATGAACATA+GGG - chr4_1:51656703-51656722 None:intergenic 25.0%
! ATCCAAAAACATATGAACAT+AGG - chr4_1:51656704-51656723 None:intergenic 25.0%
! TTATCTCTCACCTATATAAA+TGG - chr4_1:51656907-51656926 None:intergenic 25.0%
! TATGAAATGGAAAAAAGTAG+AGG + chr4_1:51656936-51656955 Msa0554420:CDS 25.0%
!!! AATTCAACTGACTCATTTTT+GGG - chr4_1:51656997-51657016 None:intergenic 25.0%
! TTAACAATTGTGATGATTTG+CGG - chr4_1:51657248-51657267 None:intergenic 25.0%
! ATCAGAGATTGAATTGAAAA+GGG - chr4_1:51657316-51657335 None:intergenic 25.0%
! AATCAGAGATTGAATTGAAA+AGG - chr4_1:51657317-51657336 None:intergenic 25.0%
!! TTCAATTCAATCTCTGATTT+TGG + chr4_1:51657318-51657337 Msa0554420:CDS 25.0%
! AAGATGATAAATCACCTATA+TGG + chr4_1:51657370-51657389 Msa0554420:CDS 25.0%
! ACAATAAATGATGTGATTAC+TGG + chr4_1:51657887-51657906 Msa0554420:CDS 25.0%
! CAATAAATGATGTGATTACT+GGG + chr4_1:51657888-51657907 Msa0554420:CDS 25.0%
! AATAAATGATGTGATTACTG+GGG + chr4_1:51657889-51657908 Msa0554420:CDS 25.0%
!! TATGCAAGAGATTGATAATA+AGG + chr4_1:51657937-51657956 Msa0554420:CDS 25.0%
! AAGCACAAAAAATAATCAAG+AGG + chr4_1:51658146-51658165 Msa0554420:CDS 25.0%
! AAAAGTAAAGATGCTTAAAG+AGG - chr4_1:51658437-51658456 None:intergenic 25.0%
!! AAGAAAGAGTGTGTTAAAAT+AGG - chr4_1:51658863-51658882 None:intergenic 25.0%
!! AGTTGCATTCATTTTCAAAA+TGG - chr4_1:51658926-51658945 None:intergenic 25.0%
! AAATGTTAAAATCAGTGTTG+CGG + chr4_1:51658986-51659005 Msa0554420:intron 25.0%
!! AGGCTTTTTATAAATAAGAG+AGG - chr4_1:51659249-51659268 None:intergenic 25.0%
!! TATGGATGTGTATTTTATTG+TGG - chr4_1:51659353-51659372 None:intergenic 25.0%
!! AGTTTCTGGAAAATATTTCA+TGG + chr4_1:51659396-51659415 Msa0554420:intron 25.0%
! CTAACGATATAGAATAGAAA+TGG - chr4_1:51659426-51659445 None:intergenic 25.0%
! TAGAGAGAAATGAAGATAAA+TGG + chr4_1:51659443-51659462 Msa0554420:intron 25.0%
! AACATGTATTAAAAAACGGA+GGG + chr4_1:51659872-51659891 Msa0554420:intron 25.0%
!! GATTTATTGACAAGTGTTTT+AGG - chr4_1:51660023-51660042 None:intergenic 25.0%
! TTAGCATGATTCTTCAAAAA+TGG + chr4_1:51660079-51660098 Msa0554420:intron 25.0%
! AAGCGAATTATAATTTAGGA+CGG - chr4_1:51660146-51660165 None:intergenic 25.0%
! TCCTAAATTATAATTCGCTT+TGG + chr4_1:51660146-51660165 Msa0554420:intron 25.0%
! TCCAAAGCGAATTATAATTT+AGG - chr4_1:51660150-51660169 None:intergenic 25.0%
! AAAACTCGCTAAAAACAAAA+AGG + chr4_1:51660876-51660895 Msa0554420:intron 25.0%
! TTAAATCTAGTCATATGTGT+AGG - chr4_1:51660964-51660983 None:intergenic 25.0%
! AAATAGAAAAACGAGTTAGA+GGG + chr4_1:51661212-51661231 Msa0554420:intron 25.0%
!!! TGTGATTTTAGAAGTTGTTA+TGG - chr4_1:51661642-51661661 None:intergenic 25.0%
!!! CTTCTAAAATCACATATGAA+TGG + chr4_1:51661648-51661667 Msa0554420:intron 25.0%
! GATTACGTATTCCTAATAAA+TGG - chr4_1:51661823-51661842 None:intergenic 25.0%
! TTATTAGGAATACGTAATCA+AGG + chr4_1:51661824-51661843 Msa0554420:intron 25.0%
! TATTAGGAATACGTAATCAA+GGG + chr4_1:51661825-51661844 Msa0554420:intron 25.0%
!! TAACAATTCTCATATTGGTT+AGG + chr4_1:51661849-51661868 Msa0554420:intron 25.0%
! ACTTCAAAACTACTAACAAT+TGG - chr4_1:51661914-51661933 None:intergenic 25.0%
! AAGATGAAATGAACAATCTA+TGG + chr4_1:51662210-51662229 Msa0554420:exon 25.0%
! CAAATATTATAAGCCAACAT+TGG - chr4_1:51662515-51662534 None:intergenic 25.0%
! AGTCTAATACAAGAGTGTAT+CGG - chr4_1:51654902-51654921 None:intergenic 30.0%
! CGCAACAATTTTCTTTTTAC+AGG + chr4_1:51655027-51655046 Msa0554420:five_prime_UTR 30.0%
TTATTCAGGAATTAAGACTC+GGG - chr4_1:51655088-51655107 None:intergenic 30.0%
! TTCCTGAATAATGTCTTGTT+AGG + chr4_1:51655097-51655116 Msa0554420:five_prime_UTR 30.0%
AACCTAACAAGACATTATTC+AGG - chr4_1:51655102-51655121 None:intergenic 30.0%
AGGTAAATCAACATTGTAAC+CGG + chr4_1:51655128-51655147 Msa0554420:five_prime_UTR 30.0%
ATGCATTGCTTCTTATAAAC+CGG - chr4_1:51655150-51655169 None:intergenic 30.0%
CATCAAAGCAGAATAACTAA+AGG - chr4_1:51655201-51655220 None:intergenic 30.0%
AAAGAGACCGTAATATTTGA+AGG - chr4_1:51655549-51655568 None:intergenic 30.0%
!! GTTGATAATACAAGACAAGA+AGG + chr4_1:51655612-51655631 Msa0554420:five_prime_UTR 30.0%
TGATAATACAAGACAAGAAG+GGG + chr4_1:51655614-51655633 Msa0554420:five_prime_UTR 30.0%
! GTATATGATTTGTCTGAATC+AGG - chr4_1:51655640-51655659 None:intergenic 30.0%
TATCCTTGAAACCATTTAAG+CGG + chr4_1:51655719-51655738 Msa0554420:five_prime_UTR 30.0%
! CTGTACATGGTGTAAATTTT+TGG + chr4_1:51656200-51656219 Msa0554420:five_prime_UTR 30.0%
!!! TGTAAATTTTTGGTTGAAGC+AGG + chr4_1:51656210-51656229 Msa0554420:five_prime_UTR 30.0%
! ATCATTTTCGTACATATTGC+CGG + chr4_1:51656243-51656262 Msa0554420:five_prime_UTR 30.0%
TAAATTGTGATAAATGTCGC+CGG - chr4_1:51656265-51656284 None:intergenic 30.0%
! TTTCCTTTTGATCATAAACG+TGG - chr4_1:51656395-51656414 None:intergenic 30.0%
! TGCACTTGTATTTTCAATGT+TGG - chr4_1:51656596-51656615 None:intergenic 30.0%
AGTGCATAGATCATAATCAA+TGG + chr4_1:51656617-51656636 Msa0554420:exon 30.0%
CCAAAAACATATGAACATAG+GGG - chr4_1:51656702-51656721 None:intergenic 30.0%
! AAAAGTACGTACTATTATGG+AGG - chr4_1:51656811-51656830 None:intergenic 30.0%
ATGCATGCAACCATTTATAT+AGG + chr4_1:51656894-51656913 Msa0554420:intron 30.0%
ATATAGGTGAGAGATAAAGA+TGG + chr4_1:51656910-51656929 Msa0554420:intron 30.0%
! GGAACCTTAAAATGATCTTT+TGG - chr4_1:51656967-51656986 None:intergenic 30.0%
!! ATTCAACTGACTCATTTTTG+GGG - chr4_1:51656996-51657015 None:intergenic 30.0%
!! GAATTCAACTGACTCATTTT+TGG - chr4_1:51656998-51657017 None:intergenic 30.0%
! TTGTTGGATACTTGATAACA+TGG - chr4_1:51657098-51657117 None:intergenic 30.0%
TGAATTGAAAAGGGAGAATA+TGG - chr4_1:51657307-51657326 None:intergenic 30.0%
! ATTCAATCTCTGATTTTGGA+TGG + chr4_1:51657322-51657341 Msa0554420:CDS 30.0%
GATAAATCACCTATATGGAA+TGG + chr4_1:51657375-51657394 Msa0554420:CDS 30.0%
ATAACAATCAAGTCTAAGCT+TGG + chr4_1:51657462-51657481 Msa0554420:CDS 30.0%
! TTTTTGATCAAATAGCCTAG+TGG + chr4_1:51657685-51657704 Msa0554420:intron 30.0%
GGAGGTCATATATTTAAATG+TGG + chr4_1:51657710-51657729 Msa0554420:intron 30.0%
! ATTACTGGGGTAATTTTCTA+TGG + chr4_1:51657902-51657921 Msa0554420:CDS 30.0%
! GGGTAATTTTCTATGGTATT+AGG + chr4_1:51657909-51657928 Msa0554420:CDS 30.0%
AATGTCAAATTCAACAGGAT+TGG + chr4_1:51657964-51657983 Msa0554420:CDS 30.0%
CTTTCCAAACAAAATCTAAG+GGG - chr4_1:51658129-51658148 None:intergenic 30.0%
GCTTTCCAAACAAAATCTAA+GGG - chr4_1:51658130-51658149 None:intergenic 30.0%
TGCTTTCCAAACAAAATCTA+AGG - chr4_1:51658131-51658150 None:intergenic 30.0%
TGTACATCCTGAGTAATTTA+GGG + chr4_1:51658400-51658419 Msa0554420:intron 30.0%
TTGAATTGTGAACAAAGAGA+TGG + chr4_1:51658501-51658520 Msa0554420:intron 30.0%
AAAGATGGTGAGTAAAACAT+TGG + chr4_1:51658658-51658677 Msa0554420:intron 30.0%
! AATAGATTTTTACGAGTGTG+TGG + chr4_1:51658744-51658763 Msa0554420:intron 30.0%
AACACACTCTTTCTTATACT+CGG + chr4_1:51658868-51658887 Msa0554420:intron 30.0%
AGCTATAAAATATGTGTTGC+AGG + chr4_1:51659051-51659070 Msa0554420:intron 30.0%
ATAAAATACAAGCCTTTCAC+AGG - chr4_1:51659172-51659191 None:intergenic 30.0%
! GGCTTGTATTTTATAATGTC+TGG + chr4_1:51659178-51659197 Msa0554420:CDS 30.0%
TACACATCCATAAGTATAGT+AGG + chr4_1:51659361-51659380 Msa0554420:intron 30.0%
TTGAACTCCTACTATACTTA+TGG - chr4_1:51659371-51659390 None:intergenic 30.0%
CAACATGTATTAAAAAACGG+AGG + chr4_1:51659871-51659890 Msa0554420:intron 30.0%
TCTTGACAGCTCATAATAAA+AGG + chr4_1:51659927-51659946 Msa0554420:intron 30.0%
CCACACAATTATATTATCCA+TGG - chr4_1:51659983-51660002 None:intergenic 30.0%
CCATGGATAATATAATTGTG+TGG + chr4_1:51659980-51659999 Msa0554420:intron 30.0%
AACCTAAATGCGAAACTTAA+TGG - chr4_1:51660060-51660079 None:intergenic 30.0%
!! GTTAGTTGTGTTGATTTCAA+TGG + chr4_1:51660101-51660120 Msa0554420:intron 30.0%
ATTCTTAATCATTGCCCTTA+AGG + chr4_1:51660462-51660481 Msa0554420:intron 30.0%
ATTTCTCAATTTGTGCGAAA+TGG + chr4_1:51660550-51660569 Msa0554420:intron 30.0%
GTCCAAACGATCTATAATTT+GGG + chr4_1:51660572-51660591 Msa0554420:intron 30.0%
AAACGATCTATAATTTGGGA+CGG + chr4_1:51660576-51660595 Msa0554420:intron 30.0%
TATGACTAGATTTAAGTCTC+CGG + chr4_1:51660969-51660988 Msa0554420:intron 30.0%
TGTATTTGTTCGATTCAGAT+TGG - chr4_1:51661074-51661093 None:intergenic 30.0%
GAAATAGAAAAACGAGTTAG+AGG + chr4_1:51661211-51661230 Msa0554420:intron 30.0%
AATAGAAAAACGAGTTAGAG+GGG + chr4_1:51661213-51661232 Msa0554420:intron 30.0%
! AGGAGAAGAAACTAGAATTT+TGG + chr4_1:51661285-51661304 Msa0554420:intron 30.0%
!! ATTTGCTATAGCACTTGTTA+AGG - chr4_1:51661458-51661477 None:intergenic 30.0%
AGGGATAACAATTCTCATAT+TGG + chr4_1:51661844-51661863 Msa0554420:intron 30.0%
! AATTCTCATATTGGTTAGGA+TGG + chr4_1:51661853-51661872 Msa0554420:intron 30.0%
TCACAAAGAATAGCATGTTA+TGG - chr4_1:51662028-51662047 None:intergenic 30.0%
! TGCTTTGGATATGATTTCAA+AGG - chr4_1:51662163-51662182 None:intergenic 30.0%
ATAATGAAACTCCTAGACAA+TGG - chr4_1:51662267-51662286 None:intergenic 30.0%
TTATAATGTACCTCAATTGG+AGG + chr4_1:51662376-51662395 Msa0554420:intron 30.0%
!! TAAGTTTTGTGGACTAAGTT+TGG + chr4_1:51662417-51662436 Msa0554420:three_prime_UTR 30.0%
! CTCACAATTTTATCCAATGT+TGG + chr4_1:51662499-51662518 Msa0554420:three_prime_UTR 30.0%
GTTACAACCCAAGAACATAT+CGG + chr4_1:51654866-51654885 Msa0554420:five_prime_UTR 35.0%
CTAACTACCGATATGTTCTT+GGG - chr4_1:51654876-51654895 None:intergenic 35.0%
TCTAACTACCGATATGTTCT+TGG - chr4_1:51654877-51654896 None:intergenic 35.0%
TGGTTGTTGAATCATGTGTT+TGG - chr4_1:51654943-51654962 None:intergenic 35.0%
! TTCTTTTTACAGGGGATGAA+TGG + chr4_1:51655037-51655056 Msa0554420:five_prime_UTR 35.0%
CAAACTTGGATGAATGGAAT+AGG + chr4_1:51655267-51655286 Msa0554420:five_prime_UTR 35.0%
GATGAATGGAATAGGAATGT+TGG + chr4_1:51655275-51655294 Msa0554420:five_prime_UTR 35.0%
TGAGAAATGTAGTACAAGTG+AGG + chr4_1:51655305-51655324 Msa0554420:five_prime_UTR 35.0%
GAGAAATGTAGTACAAGTGA+GGG + chr4_1:51655306-51655325 Msa0554420:five_prime_UTR 35.0%
AGAAATGTAGTACAAGTGAG+GGG + chr4_1:51655307-51655326 Msa0554420:five_prime_UTR 35.0%
TGAAAACTTAGTCCCCAAAT+AGG + chr4_1:51655370-51655389 Msa0554420:five_prime_UTR 35.0%
TTGTAGTTTCCGACCTATTT+GGG - chr4_1:51655386-51655405 None:intergenic 35.0%
TTTGTAGTTTCCGACCTATT+TGG - chr4_1:51655387-51655406 None:intergenic 35.0%
TCGGAAACTACAAACTATGA+GGG + chr4_1:51655393-51655412 Msa0554420:five_prime_UTR 35.0%
AATAGGAAAGCTGCTCAATA+GGG - chr4_1:51655459-51655478 None:intergenic 35.0%
TAATAGGAAAGCTGCTCAAT+AGG - chr4_1:51655460-51655479 None:intergenic 35.0%
!!! TGTCTTTAGGGCACATTTTA+AGG - chr4_1:51656125-51656144 None:intergenic 35.0%
!! AGAGGCATTAAAACTGTACA+TGG + chr4_1:51656187-51656206 Msa0554420:five_prime_UTR 35.0%
! GTATTTTCAATGTTGGCACT+GGG - chr4_1:51656589-51656608 None:intergenic 35.0%
! TGTATTTTCAATGTTGGCAC+TGG - chr4_1:51656590-51656609 None:intergenic 35.0%
AAACATATGAACATAGGGGA+GGG - chr4_1:51656698-51656717 None:intergenic 35.0%
AAAACATATGAACATAGGGG+AGG - chr4_1:51656699-51656718 None:intergenic 35.0%
! CCCCTATGTTCATATGTTTT+TGG + chr4_1:51656699-51656718 Msa0554420:CDS 35.0%
ATAGCTTGAGAGTCATCAAT+TGG - chr4_1:51656744-51656763 None:intergenic 35.0%
TGATAGGTAAGAACACATGT+TGG - chr4_1:51656776-51656795 None:intergenic 35.0%
ATAACATGGATTTCCCAAAG+GGG - chr4_1:51657084-51657103 None:intergenic 35.0%
GATAACATGGATTTCCCAAA+GGG - chr4_1:51657085-51657104 None:intergenic 35.0%
TGATAACATGGATTTCCCAA+AGG - chr4_1:51657086-51657105 None:intergenic 35.0%
TTCAAACTTCATCATGCACT+TGG + chr4_1:51657141-51657160 Msa0554420:CDS 35.0%
! AATTGTGATGATTTGCGGTT+AGG - chr4_1:51657243-51657262 None:intergenic 35.0%
CAATTGTTAACTCCTAAGAG+AGG + chr4_1:51657258-51657277 Msa0554420:CDS 35.0%
AAAGGGAGAATATGGTTGAA+GGG - chr4_1:51657299-51657318 None:intergenic 35.0%
AAAAGGGAGAATATGGTTGA+AGG - chr4_1:51657300-51657319 None:intergenic 35.0%
TTTCATCGAGAGAGAATGAT+AGG - chr4_1:51657440-51657459 None:intergenic 35.0%
GCAAGAATGTCAAATTCAAC+AGG + chr4_1:51657959-51657978 Msa0554420:CDS 35.0%
AAAGAAATATGATTCCCCCA+AGG - chr4_1:51658061-51658080 None:intergenic 35.0%
CAAAATCTAAGGGGTTAGAT+AGG - chr4_1:51658120-51658139 None:intergenic 35.0%
! CTAACCCCTTAGATTTTGTT+TGG + chr4_1:51658122-51658141 Msa0554420:CDS 35.0%
!! TCACTGTTTTTCTCACTGAA+TGG + chr4_1:51658182-51658201 Msa0554420:CDS 35.0%
GATATGCAGCTGAAATTAAG+AGG + chr4_1:51658211-51658230 Msa0554420:CDS 35.0%
AAATTAAGAGGACATGAGGT+GGG + chr4_1:51658223-51658242 Msa0554420:intron 35.0%
!!! CCAAGAACTTTTGACTTGTT+TGG - chr4_1:51658320-51658339 None:intergenic 35.0%
CCAAACAAGTCAAAAGTTCT+TGG + chr4_1:51658317-51658336 Msa0554420:intron 35.0%
GTGTACATCCTGAGTAATTT+AGG + chr4_1:51658399-51658418 Msa0554420:intron 35.0%
!! TTTCTAGAGCAATTCTTGTG+TGG - chr4_1:51658797-51658816 None:intergenic 35.0%
GCAGTTGCTAAACATCTATA+TGG + chr4_1:51659073-51659092 Msa0554420:CDS 35.0%
GTTGTCATGTCCAATTTGAT+CGG + chr4_1:51659115-51659134 Msa0554420:CDS 35.0%
TTGTCATGTCCAATTTGATC+GGG + chr4_1:51659116-51659135 Msa0554420:CDS 35.0%
! AAAAGATGATGGTTTACCTC+AGG - chr4_1:51659208-51659227 None:intergenic 35.0%
! AAACCATCATCTTTTCTCTC+TGG + chr4_1:51659213-51659232 Msa0554420:intron 35.0%
AAACCAGAGAGAAAAGATGA+TGG - chr4_1:51659219-51659238 None:intergenic 35.0%
! ATGCATTGACATGTTTGAAG+TGG - chr4_1:51659685-51659704 None:intergenic 35.0%
CTCCATTAAGTTTCGCATTT+AGG + chr4_1:51660055-51660074 Msa0554420:intron 35.0%
GGTCCAAACGATCTATAATT+TGG + chr4_1:51660571-51660590 Msa0554420:intron 35.0%
GTCCCAAATTATAGATCGTT+TGG - chr4_1:51660577-51660596 None:intergenic 35.0%
ACACTAATTATGAGAGAGAG+AGG + chr4_1:51660759-51660778 Msa0554420:intron 35.0%
GCAGATCAAATCAATGACTT+TGG - chr4_1:51661031-51661050 None:intergenic 35.0%
AAATCACATATGAATGGTCG+TGG + chr4_1:51661654-51661673 Msa0554420:intron 35.0%
AACAATCTATGGAGAAAGAG+AGG + chr4_1:51662221-51662240 Msa0554420:exon 35.0%
ACAATCTATGGAGAAAGAGA+GGG + chr4_1:51662222-51662241 Msa0554420:three_prime_UTR 35.0%
AGTATTCAATGCCATTGTCT+AGG + chr4_1:51662253-51662272 Msa0554420:three_prime_UTR 35.0%
AGTTCACATTCTAAACCACT+TGG + chr4_1:51662441-51662460 Msa0554420:three_prime_UTR 35.0%
TTTACAGGGGATGAATGGTT+CGG + chr4_1:51655042-51655061 Msa0554420:five_prime_UTR 40.0%
GAATGGAATAGGAATGTTGG+TGG + chr4_1:51655278-51655297 Msa0554420:five_prime_UTR 40.0%
AACTTAGTCCCCAAATAGGT+CGG + chr4_1:51655374-51655393 Msa0554420:five_prime_UTR 40.0%
TGTAGTTTCCGACCTATTTG+GGG - chr4_1:51655385-51655404 None:intergenic 40.0%
GTCGGAAACTACAAACTATG+AGG + chr4_1:51655392-51655411 Msa0554420:five_prime_UTR 40.0%
CGGAAACTACAAACTATGAG+GGG + chr4_1:51655394-51655413 Msa0554420:five_prime_UTR 40.0%
! CAAACTATGAGGGGCTTTTA+TGG + chr4_1:51655403-51655422 Msa0554420:five_prime_UTR 40.0%
ATAGGAAAGCTGCTCAATAG+GGG - chr4_1:51655458-51655477 None:intergenic 40.0%
TCTCTTTACCTCGAGAACTA+GGG + chr4_1:51655562-51655581 Msa0554420:five_prime_UTR 40.0%
! TAATTCGAGCACCGCTTAAA+TGG - chr4_1:51655733-51655752 None:intergenic 40.0%
GAATTAATGTCCCAGTCGAT+CGG + chr4_1:51655747-51655766 Msa0554420:five_prime_UTR 40.0%
TAAATTCATGCCGATCGACT+GGG - chr4_1:51655760-51655779 None:intergenic 40.0%
ATAAATTCATGCCGATCGAC+TGG - chr4_1:51655761-51655780 None:intergenic 40.0%
TCATAAACGTGGCTCTTGAA+CGG - chr4_1:51656384-51656403 None:intergenic 40.0%
GAGCCACGTTTATGATCAAA+AGG + chr4_1:51656389-51656408 Msa0554420:five_prime_UTR 40.0%
TTTGATTGGATCCTCACATC+TGG - chr4_1:51656540-51656559 None:intergenic 40.0%
AGGATCCAATCAAATTGTGC+TGG + chr4_1:51656546-51656565 Msa0554420:five_prime_UTR 40.0%
TATTGTCCACTTGGACTTAC+TGG - chr4_1:51656666-51656685 None:intergenic 40.0%
!! GTGTTGAAGTATTGTCCACT+TGG - chr4_1:51656675-51656694 None:intergenic 40.0%
AACATATGAACATAGGGGAG+GGG - chr4_1:51656697-51656716 None:intergenic 40.0%
!! GACTCATTTTTGGGGAACAT+TGG - chr4_1:51656988-51657007 None:intergenic 40.0%
ACCAAAAGACAAACCCCTTT+GGG + chr4_1:51657068-51657087 Msa0554420:CDS 40.0%
GGAAAAGACAAAGGAAGAGA+AGG - chr4_1:51657222-51657241 None:intergenic 40.0%
TTGCGGTTAGGAAAAGACAA+AGG - chr4_1:51657231-51657250 None:intergenic 40.0%
CACTTGAAAAAGCCTCTCTT+AGG - chr4_1:51657273-51657292 None:intergenic 40.0%
!!! CTAAGAGAGGCTTTTTCAAG+TGG + chr4_1:51657271-51657290 Msa0554420:CDS 40.0%
ATCACCTATATGGAATGGTG+AGG + chr4_1:51657380-51657399 Msa0554420:CDS 40.0%
!! GATAGGTTTGATAGTGCACA+AGG - chr4_1:51657423-51657442 None:intergenic 40.0%
AATCAAGTCTAAGCTTGGAG+TGG + chr4_1:51657467-51657486 Msa0554420:CDS 40.0%
ACATTGCATCATACACACAG+AGG - chr4_1:51657767-51657786 None:intergenic 40.0%
TTGCTAAGTACCAGGAACAT+TGG + chr4_1:51657989-51658008 Msa0554420:CDS 40.0%
! TTGGTAACTTCCAATGTTCC+TGG - chr4_1:51658002-51658021 None:intergenic 40.0%
TGGTCATGTCTTGGATTGAT+TGG - chr4_1:51658021-51658040 None:intergenic 40.0%
ATCAATCCAAGACATGACCA+AGG + chr4_1:51658021-51658040 Msa0554420:CDS 40.0%
! AGGAGATTTTGAATCAGCCT+TGG - chr4_1:51658041-51658060 None:intergenic 40.0%
! AGGCTGATTCAAAATCTCCT+TGG + chr4_1:51658041-51658060 Msa0554420:CDS 40.0%
! GGCTGATTCAAAATCTCCTT+GGG + chr4_1:51658042-51658061 Msa0554420:CDS 40.0%
! GCTGATTCAAAATCTCCTTG+GGG + chr4_1:51658043-51658062 Msa0554420:CDS 40.0%
CTGATTCAAAATCTCCTTGG+GGG + chr4_1:51658044-51658063 Msa0554420:CDS 40.0%
GCTGAAATTAAGAGGACATG+AGG + chr4_1:51658219-51658238 Msa0554420:CDS 40.0%
GAAATTAAGAGGACATGAGG+TGG + chr4_1:51658222-51658241 Msa0554420:intron 40.0%
TCAGGATGTACACATCTGAA+GGG - chr4_1:51658392-51658411 None:intergenic 40.0%
ACATCCTGAGTAATTTAGGG+TGG + chr4_1:51658403-51658422 Msa0554420:intron 40.0%
! CATCCTGAGTAATTTAGGGT+GGG + chr4_1:51658404-51658423 Msa0554420:intron 40.0%
TTTCCCACCCTAAATTACTC+AGG - chr4_1:51658410-51658429 None:intergenic 40.0%
AATACAAGCCTTTCACAGGA+TGG - chr4_1:51659168-51659187 None:intergenic 40.0%
!! ATCTTTTCTCTCTGGTTTGC+TGG + chr4_1:51659221-51659240 Msa0554420:intron 40.0%
GGAGTTCAAGAGTAAGTTTC+TGG + chr4_1:51659382-51659401 Msa0554420:intron 40.0%
TACTTTAACCAATGCCCCAA+GGG - chr4_1:51660348-51660367 None:intergenic 40.0%
!! GTCATTGATTTGATCTGCAC+TGG + chr4_1:51661033-51661052 Msa0554420:intron 40.0%
!! ACAGAAGTTCAAGTTGTGCA+TGG + chr4_1:51662131-51662150 Msa0554420:CDS 40.0%
CATATCCAAAGCAGCATCAA+TGG + chr4_1:51662170-51662189 Msa0554420:CDS 40.0%
! AATCTCCATTGATGCTGCTT+TGG - chr4_1:51662178-51662197 None:intergenic 40.0%
CAATCTATGGAGAAAGAGAG+GGG + chr4_1:51662223-51662242 Msa0554420:three_prime_UTR 40.0%
ACATGACATTCCTCCAATTG+AGG - chr4_1:51662389-51662408 None:intergenic 40.0%
! AGGTGTTGTGAAATTCCAAG+TGG - chr4_1:51662459-51662478 None:intergenic 40.0%
TTACAGGGGATGAATGGTTC+GGG + chr4_1:51655043-51655062 Msa0554420:five_prime_UTR 45.0%
! GGATGAATGGTTCGGGAATT+AGG + chr4_1:51655050-51655069 Msa0554420:five_prime_UTR 45.0%
CGTGAGCAAACTTGGATGAA+TGG + chr4_1:51655261-51655280 Msa0554420:five_prime_UTR 45.0%
! TAGTACAAGTGAGGGGCTTT+TGG + chr4_1:51655314-51655333 Msa0554420:five_prime_UTR 45.0%
! GGGACTAAGTTTTCATCGCT+CGG - chr4_1:51655365-51655384 None:intergenic 45.0%
TAGGAAAGCTGCTCAATAGG+GGG - chr4_1:51655457-51655476 None:intergenic 45.0%
GTCTCTTTACCTCGAGAACT+AGG + chr4_1:51655561-51655580 Msa0554420:five_prime_UTR 45.0%
CTCTTTACCTCGAGAACTAG+GGG + chr4_1:51655563-51655582 Msa0554420:five_prime_UTR 45.0%
TCTTTACCTCGAGAACTAGG+GGG + chr4_1:51655564-51655583 Msa0554420:five_prime_UTR 45.0%
!! TTTTTACCCCCTAGTTCTCG+AGG - chr4_1:51655573-51655592 None:intergenic 45.0%
GCACCGCTTAAATGGTTTCA+AGG - chr4_1:51655725-51655744 None:intergenic 45.0%
! CAGACTAACTTGTGCCCTAA+AGG + chr4_1:51655989-51656008 Msa0554420:five_prime_UTR 45.0%
CATAAACGTGGCTCTTGAAC+GGG - chr4_1:51656383-51656402 None:intergenic 45.0%
TGAATGTCACACCAGATGTG+AGG + chr4_1:51656526-51656545 Msa0554420:five_prime_UTR 45.0%
GCATGCCAGCACAATTTGAT+TGG - chr4_1:51656554-51656573 None:intergenic 45.0%
ACTATTATGGAGGAGAAGCG+TGG - chr4_1:51656801-51656820 None:intergenic 45.0%
CACCAAAAGACAAACCCCTT+TGG + chr4_1:51657067-51657086 Msa0554420:CDS 45.0%
! TCCCAAAGGGGTTTGTCTTT+TGG - chr4_1:51657072-51657091 None:intergenic 45.0%
GTGTAAGCAGCATTGCTTGT+TGG - chr4_1:51657114-51657133 None:intergenic 45.0%
! CTTCATCATGCACTTGGTGA+TGG + chr4_1:51657147-51657166 Msa0554420:CDS 45.0%
!! TGGTGATGGTTACTCTCTCA+TGG + chr4_1:51657161-51657180 Msa0554420:CDS 45.0%
! GGTGATGGTTACTCTCTCAT+GGG + chr4_1:51657162-51657181 Msa0554420:CDS 45.0%
CCTTCCTCACCATTCCATAT+AGG - chr4_1:51657387-51657406 None:intergenic 45.0%
CCTATATGGAATGGTGAGGA+AGG + chr4_1:51657384-51657403 Msa0554420:CDS 45.0%
TCGACATAATGTCCCTACCA+CGG + chr4_1:51657560-51657579 Msa0554420:intron 45.0%
GATCCTCTACCGCTATAGTA+GGG - chr4_1:51657591-51657610 None:intergenic 45.0%
AGATCCTCTACCGCTATAGT+AGG - chr4_1:51657592-51657611 None:intergenic 45.0%
TGATCAAATAGCCTAGTGGC+TGG + chr4_1:51657689-51657708 Msa0554420:intron 45.0%
ATATATGACCTCCAGCCACT+AGG - chr4_1:51657703-51657722 None:intergenic 45.0%
TGCATCATACACACAGAGGT+CGG - chr4_1:51657763-51657782 None:intergenic 45.0%
!! GATTGGTGTTGCTAAGTACC+AGG + chr4_1:51657981-51658000 Msa0554420:CDS 45.0%
AATCAGCCTTGGTCATGTCT+TGG - chr4_1:51658030-51658049 None:intergenic 45.0%
!! GCTTGGCTTAACTTTGGGAT+TGG - chr4_1:51658094-51658113 None:intergenic 45.0%
ATCTAAGGGGTTAGATAGGC+TGG - chr4_1:51658116-51658135 None:intergenic 45.0%
CTCAGGATGTACACATCTGA+AGG - chr4_1:51658393-51658412 None:intergenic 45.0%
GCAATTCTTGTGTGGAGACA+AGG - chr4_1:51658789-51658808 None:intergenic 45.0%
TTGGCAAACCATCCTGTGAA+AGG + chr4_1:51659157-51659176 Msa0554420:CDS 45.0%
TATAATGTCTGGTGCACCTG+AGG + chr4_1:51659189-51659208 Msa0554420:CDS 45.0%
AGAATGCTAACCATTGCCCT+TGG + chr4_1:51660329-51660348 Msa0554420:intron 45.0%
GAATGCTAACCATTGCCCTT+GGG + chr4_1:51660330-51660349 Msa0554420:intron 45.0%
AATGCTAACCATTGCCCTTG+GGG + chr4_1:51660331-51660350 Msa0554420:intron 45.0%
GTACTTTAACCAATGCCCCA+AGG - chr4_1:51660349-51660368 None:intergenic 45.0%
CTTGCTAAGCAGTGCCTTAA+GGG - chr4_1:51660479-51660498 None:intergenic 45.0%
TCTTGCTAAGCAGTGCCTTA+AGG - chr4_1:51660480-51660499 None:intergenic 45.0%
! ACGAGTTAGAGGGGTGATTT+TGG + chr4_1:51661222-51661241 Msa0554420:intron 45.0%
! CGAGTTAGAGGGGTGATTTT+GGG + chr4_1:51661223-51661242 Msa0554420:intron 45.0%
CACCAACTAGGGGTGATTTA+GGG - chr4_1:51661260-51661279 None:intergenic 45.0%
TCTCCTTCATCCACCAACTA+GGG - chr4_1:51661271-51661290 None:intergenic 45.0%
TTCTCCTTCATCCACCAACT+AGG - chr4_1:51661272-51661291 None:intergenic 45.0%
GTGATGACTCACAAGAGAGA+AGG + chr4_1:51661307-51661326 Msa0554420:intron 45.0%
!!! TTTAATTTTTTTAAAAAAGA+TGG + chr4_1:51658643-51658662 Msa0554420:intron 5.0%
!! AATAAATAATACATAATTAA+GGG - chr4_1:51660241-51660260 None:intergenic 5.0%
!! TAATAAATAATACATAATTA+AGG - chr4_1:51660242-51660261 None:intergenic 5.0%
!!! AATAAAGAATAATTTTTTAA+AGG + chr4_1:51660306-51660325 Msa0554420:intron 5.0%
!! TAATCTTAATAATAAAATTA+AGG - chr4_1:51661529-51661548 None:intergenic 5.0%
ATTAAGACTCGGGCCTGGTT+CGG - chr4_1:51655078-51655097 None:intergenic 50.0%
! ACAAGTGAGGGGCTTTTGGA+TGG + chr4_1:51655318-51655337 Msa0554420:five_prime_UTR 50.0%
! CAAGTGAGGGGCTTTTGGAT+GGG + chr4_1:51655319-51655338 Msa0554420:five_prime_UTR 50.0%
! GGGGCTTTTATGGAAACTCG+AGG + chr4_1:51655413-51655432 Msa0554420:five_prime_UTR 50.0%
GTATGGTCACACGACTGACA+TGG - chr4_1:51656303-51656322 None:intergenic 50.0%
ACTGAGCCAGTAAGTCCAAG+TGG + chr4_1:51656657-51656676 Msa0554420:CDS 50.0%
! GAGGAGAAGCGTGGATTGAT+AGG - chr4_1:51656792-51656811 None:intergenic 50.0%
GATCCTCTAGCACTGCAGTA+TGG + chr4_1:51657524-51657543 Msa0554420:intron 50.0%
ACACCATACTGCAGTGCTAG+AGG - chr4_1:51657530-51657549 None:intergenic 50.0%
ACGGCAACACCCTACTATAG+CGG + chr4_1:51657579-51657598 Msa0554420:intron 50.0%
ACACCCTACTATAGCGGTAG+AGG + chr4_1:51657585-51657604 Msa0554420:intron 50.0%
TCAAATAGCCTAGTGGCTGG+AGG + chr4_1:51657692-51657711 Msa0554420:intron 50.0%
! GTGGAGAAATAGGGTGTTCG+AGG + chr4_1:51657729-51657748 Msa0554420:intron 50.0%
CATCATACACACAGAGGTCG+GGG - chr4_1:51657761-51657780 None:intergenic 50.0%
GCATCATACACACAGAGGTC+GGG - chr4_1:51657762-51657781 None:intergenic 50.0%
!! GGCTGGCTTGGCTTAACTTT+GGG - chr4_1:51658099-51658118 None:intergenic 50.0%
!! AGGCTGGCTTGGCTTAACTT+TGG - chr4_1:51658100-51658119 None:intergenic 50.0%
TTCCACTGGCCCGATCAAAT+TGG - chr4_1:51659128-51659147 None:intergenic 50.0%
! GGATGGTTTGCCAAAGCCAT+AGG - chr4_1:51659151-51659170 None:intergenic 50.0%
ATCCGGAGACATGGGTATTC+CGG - chr4_1:51660991-51661010 None:intergenic 50.0%
AGTCGTCAACGTTGCAGATC+CGG - chr4_1:51661008-51661027 None:intergenic 50.0%
GACCCTAAATCACCCCTAGT+TGG + chr4_1:51661255-51661274 Msa0554420:intron 50.0%
CCACCAACTAGGGGTGATTT+AGG - chr4_1:51661261-51661280 None:intergenic 50.0%
CCTAAATCACCCCTAGTTGG+TGG + chr4_1:51661258-51661277 Msa0554420:intron 50.0%
CTCCTTCATCCACCAACTAG+GGG - chr4_1:51661270-51661289 None:intergenic 50.0%
TATGAATGGTCGTGGACTCG+TGG + chr4_1:51661662-51661681 Msa0554420:intron 50.0%
TTAAGACTCGGGCCTGGTTC+GGG - chr4_1:51655077-51655096 None:intergenic 55.0%
CAGGAATTAAGACTCGGGCC+TGG - chr4_1:51655083-51655102 None:intergenic 55.0%
GGTGAGCACGTGAGCAAACT+TGG + chr4_1:51655253-51655272 Msa0554420:five_prime_UTR 55.0%
! TGAGGGGCTTTTGGATGGGT+CGG + chr4_1:51655323-51655342 Msa0554420:five_prime_UTR 55.0%
!! AGTAGGGTGTTGCCGTGGTA+GGG - chr4_1:51657575-51657594 None:intergenic 55.0%
!! TAGTAGGGTGTTGCCGTGGT+AGG - chr4_1:51657576-51657595 None:intergenic 55.0%
!! GCTATAGTAGGGTGTTGCCG+TGG - chr4_1:51657580-51657599 None:intergenic 55.0%
CCTCGTGAGCTTAGCACAGT+TGG - chr4_1:51657795-51657814 None:intergenic 55.0%
CCAACTGTGCTAAGCTCACG+AGG + chr4_1:51657792-51657811 Msa0554420:intron 55.0%
! AGGGGTTAGATAGGCTGGCT+TGG - chr4_1:51658111-51658130 None:intergenic 55.0%
GTCCAATTTGATCGGGCCAG+TGG + chr4_1:51659123-51659142 Msa0554420:CDS 55.0%
GCCAGTGGAACCTATGGCTT+TGG + chr4_1:51659138-51659157 Msa0554420:CDS 55.0%
GCCAAAGCCATAGGTTCCAC+TGG - chr4_1:51659142-51659161 None:intergenic 55.0%
AACCATTGCCCTTGGGGCAT+TGG + chr4_1:51660337-51660356 Msa0554420:intron 55.0%
AACCAATGCCCCAAGGGCAA+TGG - chr4_1:51660342-51660361 None:intergenic 55.0%
CTCCGGAATACCCATGTCTC+CGG + chr4_1:51660986-51661005 Msa0554420:intron 55.0%
CGTTGCAGATCCGGAGACAT+GGG - chr4_1:51660999-51661018 None:intergenic 55.0%
ACGTTGCAGATCCGGAGACA+TGG - chr4_1:51661000-51661019 None:intergenic 55.0%
!! CACCCCTAGTTGGTGGATGA+AGG + chr4_1:51661265-51661284 Msa0554420:intron 55.0%
CGGGAATTAGGACCCGAACC+AGG + chr4_1:51655062-51655081 Msa0554420:five_prime_UTR 60.0%
! TCGAGGAGCACGTGAGCATG+TGG + chr4_1:51655430-51655449 Msa0554420:five_prime_UTR 60.0%
! CGAGGAGCACGTGAGCATGT+GGG + chr4_1:51655431-51655450 Msa0554420:five_prime_UTR 60.0%
GATCGGGCCAGTGGAACCTA+TGG + chr4_1:51659132-51659151 Msa0554420:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 51654823 51662558 51654823 ID=Msa0554420;Name=Msa0554420
chr4_1 mRNA 51654823 51662558 51654823 ID=Msa0554420-mRNA-1;Parent=Msa0554420;Name=Msa0554420-mRNA-1;_AED=0.32;_eAED=0.32;_QI=1813|1|1|1|0.8|0.66|6|295|471
chr4_1 exon 51654823 51656818 51654823 ID=Msa0554420-mRNA-1:exon:14827;Parent=Msa0554420-mRNA-1
chr4_1 exon 51656916 51657488 51656916 ID=Msa0554420-mRNA-1:exon:14828;Parent=Msa0554420-mRNA-1
chr4_1 exon 51657887 51658240 51657887 ID=Msa0554420-mRNA-1:exon:14829;Parent=Msa0554420-mRNA-1
chr4_1 exon 51659073 51659210 51659073 ID=Msa0554420-mRNA-1:exon:14830;Parent=Msa0554420-mRNA-1
chr4_1 exon 51662054 51662364 51662054 ID=Msa0554420-mRNA-1:exon:14831;Parent=Msa0554420-mRNA-1
chr4_1 exon 51662407 51662558 51662407 ID=Msa0554420-mRNA-1:exon:14832;Parent=Msa0554420-mRNA-1
chr4_1 five_prime_UTR 51654823 51656635 51654823 ID=Msa0554420-mRNA-1:five_prime_utr;Parent=Msa0554420-mRNA-1
chr4_1 CDS 51656636 51656818 51656636 ID=Msa0554420-mRNA-1:cds;Parent=Msa0554420-mRNA-1
chr4_1 CDS 51656916 51657488 51656916 ID=Msa0554420-mRNA-1:cds;Parent=Msa0554420-mRNA-1
chr4_1 CDS 51657887 51658240 51657887 ID=Msa0554420-mRNA-1:cds;Parent=Msa0554420-mRNA-1
chr4_1 CDS 51659073 51659210 51659073 ID=Msa0554420-mRNA-1:cds;Parent=Msa0554420-mRNA-1
chr4_1 CDS 51662054 51662221 51662054 ID=Msa0554420-mRNA-1:cds;Parent=Msa0554420-mRNA-1
chr4_1 three_prime_UTR 51662222 51662364 51662222 ID=Msa0554420-mRNA-1:three_prime_utr;Parent=Msa0554420-mRNA-1
chr4_1 three_prime_UTR 51662407 51662558 51662407 ID=Msa0554420-mRNA-1:three_prime_utr;Parent=Msa0554420-mRNA-1
Gene Sequence

>Msa0554420

ATGGACAACTTTGAAGATGTAACTGAGCCAGTAAGTCCAAGTGGACAATACTTCAACACCCCTCCCCTATGTTCATATGTTTTTGGATTTTTGGAATTAGAAATTCCAATTGATGACTCTCAAGCTATGTATTTGATCCAACATGTGTTCTTACCTATCAATCCACGCTTCTCCTCCATAATAGTGAGAGATAAAGATGGAAATATGAAATGGAAAAAAGTAGAGGTAAATCCAAAAGATCATTTTAAGGTTCCAATGTTCCCCAAAAATGAGTCAGTTGAATTCTATGATAAAGATTTTGATGATTATGTGTCAAAGATATTAATAGAAAGGACACCAAAAGACAAACCCCTTTGGGAAATCCATGTTATCAAGTATCCAACAAGCAATGCTGCTTACACCATAATATTCAAACTTCATCATGCACTTGGTGATGGTTACTCTCTCATGGGTGCTCTTCTTTCTTGTCTTCATAGAGCTGATGATCCTTCTCTTCCTTTGTCTTTTCCTAACCGCAAATCATCACAATTGTTAACTCCTAAGAGAGGCTTTTTCAAGTGGTTCCCTTCAACCATATTCTCCCTTTTCAATTCAATCTCTGATTTTGGATGGAGTATATTGAAAAGTTCAATAATTGAAGATGATAAATCACCTATATGGAATGGTGAGGAAGGTTCAGAGTTTCTACCTTGTGCACTATCAAACCTATCATTCTCTCTCGATGAAATCATAACAATCAAGTCTAAGCTTGGAGTGACAATAAATGATGTGATTACTGGGGTAATTTTCTATGGTATTAGGCTATATATGCAAGAGATTGATAATAAGGCAAGAATGTCAAATTCAACAGGATTGGTGTTGCTAAGTACCAGGAACATTGGAAGTTACCAATCAATCCAAGACATGACCAAGGCTGATTCAAAATCTCCTTGGGGGAATCATATTTCTTTCTTACATATACCAATCCCAAAGTTAAGCCAAGCCAGCCTATCTAACCCCTTAGATTTTGTTTGGAAAGCACAAAAAATAATCAAGAGGAAGAGAAGTACTTTCACTGTTTTTCTCACTGAATGGCTTTTAGATATGCAGCTGAAATTAAGAGGACATGAGGCAGTTGCTAAACATCTATATGGTACATTGAGAAACTCAAGTGTTGTCATGTCCAATTTGATCGGGCCAGTGGAACCTATGGCTTTGGCAAACCATCCTGTGAAAGGCTTGTATTTTATAATGTCTGGTGCACCTGAGAGTATAGATATTGCAGTTATGAGCTATGCAAGAATATTAAGAATTACTTTGAAAACACAGAAAGACTTAATTGATGAACAGAAGTTCAAGTTGTGCATGGCAAGAGCCTTTGAAATCATATCCAAAGCAGCATCAATGGAGATTCCCAACAAAAAAAAGATGAAATGA
Protein sequence

>Msa0554420

MDNFEDVTEPVSPSGQYFNTPPLCSYVFGFLELEIPIDDSQAMYLIQHVFLPINPRFSSIIVRDKDGNMKWKKVEVNPKDHFKVPMFPKNESVEFYDKDFDDYVSKILIERTPKDKPLWEIHVIKYPTSNAAYTIIFKLHHALGDGYSLMGALLSCLHRADDPSLPLSFPNRKSSQLLTPKRGFFKWFPSTIFSLFNSISDFGWSILKSSIIEDDKSPIWNGEEGSEFLPCALSNLSFSLDEIITIKSKLGVTINDVITGVIFYGIRLYMQEIDNKARMSNSTGLVLLSTRNIGSYQSIQDMTKADSKSPWGNHISFLHIPIPKLSQASLSNPLDFVWKAQKIIKRKRSTFTVFLTEWLLDMQLKLRGHEAVAKHLYGTLRNSSVVMSNLIGPVEPMALANHPVKGLYFIMSGAPESIDIAVMSYARILRITLKTQKDLIDEQKFKLCMARAFEIISKAASMEIPNKKKMK*