AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0038860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0038860 MtrunA17_Chr1g0202661 87.662 308 24 2 1 306 1 296 0.0 518
Msa0038860 MtrunA17_Chr6g0468841 72.468 316 74 4 1 306 1 313 9.35e-156 437
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0038860 AT4G25700.1 67.857 308 84 5 1 303 1 298 3.01e-145 411
Msa0038860 AT5G52570.1 68.167 311 78 6 1 304 1 297 9.15e-137 389
Msa0038860 AT4G25700.2 60.889 225 73 5 1 220 1 215 4.71e-86 258
Msa0038860 AT4G25700.3 60.889 225 73 5 1 220 1 215 4.71e-86 258
Msa0038860 AT5G52570.2 40.065 307 102 9 1 304 1 228 7.98e-45 152

Find 109 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGAGATTGTAGGGCTTTA+AGG 0.118724 1_1:-68365351 None:intergenic
TTTAGGTAGGTATGGAATAT+TGG 0.214997 1_1:+68366065 Msa0038860:intron
TTCATCTGGTTAGTGTGTTT+TGG 0.236695 1_1:-68365509 None:intergenic
CTCTCCTTTCACCCATTCAT+TGG 0.248086 1_1:+68365216 Msa0038860:five_prime_UTR
GGTCTTGGAATTACGGTGTT+TGG 0.277671 1_1:+68366653 Msa0038860:CDS
GCAATTGCTCTTCTCTCATA+TGG 0.287011 1_1:+68366433 Msa0038860:CDS
CACACTAACCAGATGAAAAC+TGG 0.295803 1_1:+68365515 Msa0038860:CDS
TTCTTGTTCTTTGGGTTTGA+AGG 0.312771 1_1:-68365448 None:intergenic
TAGCTTTGGTGTTACCTCTA+TGG 0.317708 1_1:+68365649 Msa0038860:CDS
TTAGGTAGGTATGGAATATT+GGG 0.328698 1_1:+68366066 Msa0038860:intron
CTTCACCGTTTGTGTTCTAA+TGG 0.335091 1_1:+68365481 Msa0038860:CDS
TGAGGGCTGTGTTTACTGTT+AGG 0.353483 1_1:-68365554 None:intergenic
GTCTTGGAATTACGGTGTTT+GGG 0.363241 1_1:+68366654 Msa0038860:CDS
GATGGGCTCATGAGGTTCTA+TGG 0.363709 1_1:+68366092 Msa0038860:CDS
GCTATGACGGAAACCTCTTA+AGG 0.364201 1_1:-68365420 None:intergenic
TGACTAGGGTCTTGGAATTA+CGG 0.376865 1_1:+68366646 Msa0038860:intron
TTGGTGCCTGGTCTCTGCTT+TGG 0.387095 1_1:+68366472 Msa0038860:CDS
GTATGGAATATTGGGCTAGA+TGG 0.394991 1_1:+68366074 Msa0038860:CDS
GTTCCTTGGTCTGAAATGTT+TGG 0.410492 1_1:+68365933 Msa0038860:CDS
TCATCTTATGACTAGGGTCT+TGG 0.416939 1_1:+68366638 Msa0038860:intron
CTATGACGGAAACCTCTTAA+GGG 0.426369 1_1:-68365419 None:intergenic
TTTAACAAGGGATTGGTGCC+TGG 0.432109 1_1:+68366460 Msa0038860:CDS
GAGGGATGAGTGGGAAATGA+AGG 0.432487 1_1:-68365260 None:intergenic
GGCACATTTGCCCTCTCAGT+TGG 0.435097 1_1:+68365954 Msa0038860:CDS
GAGAGAAGGGATTGGATGGA+TGG 0.435764 1_1:-68365198 None:intergenic
CATGTTTGTCCATGATGGAT+TGG 0.437840 1_1:+68366685 Msa0038860:CDS
TTATAGATTCTCATGGCAAA+TGG 0.438735 1_1:+68365688 Msa0038860:CDS
GGAAGAAGTTGAGAGATTGT+AGG 0.440003 1_1:-68365360 None:intergenic
AAAACATCATTAAGCTCAAA+TGG 0.441795 1_1:-68366388 None:intergenic
CCCCTTTGAATTTGTCCGAA+TGG 0.445592 1_1:-68366950 None:intergenic
GGGCTTTAAGGTTGTGGCGG+TGG 0.448289 1_1:-68365339 None:intergenic
GAAGAAGTTGAGAGATTGTA+GGG 0.449387 1_1:-68365359 None:intergenic
GCCTACATGTTTGTCCATGA+TGG 0.451700 1_1:+68366680 Msa0038860:CDS
AGCTCAAATGGTCCCTCTCT+TGG 0.457561 1_1:-68366376 None:intergenic
AGGGTAGTGGAGAGGTTCCT+TGG 0.458584 1_1:+68365919 Msa0038860:intron
TAGTGTTGTTAGAGAGAGAG+AGG 0.461803 1_1:-68365279 None:intergenic
TTGTTTGCAGCTCCACCATT+CGG 0.466820 1_1:+68366935 Msa0038860:intron
GACAGAGACAAGCCAATGAA+TGG 0.467951 1_1:-68365228 None:intergenic
AGCTAGAGAAAGAGATAAGT+AGG 0.469767 1_1:+68367422 Msa0038860:CDS
TCAGCCGCCATGGAGAATAA+AGG 0.471323 1_1:-68365311 None:intergenic
AACAGCTAAGATTGCCATAG+AGG 0.474363 1_1:-68365663 None:intergenic
AAATTCAAAGGGGTGCCATA+TGG 0.476176 1_1:+68366960 Msa0038860:CDS
ACCATTCGGACAAATTCAAA+GGG 0.476981 1_1:+68366949 Msa0038860:CDS
GCAGCTGTAATGTCTAGCTT+TGG 0.479617 1_1:+68365635 Msa0038860:CDS
AGGAGAACAAGATCATATAC+TGG 0.482339 1_1:+68367442 Msa0038860:CDS
TATGAGAGAAGAGCAATTGC+AGG 0.484302 1_1:-68366430 None:intergenic
GAAGTAGGGCACGTTGGCAA+TGG 0.491586 1_1:-68366732 None:intergenic
ATCGTAACCTTTATTCTCCA+TGG 0.493629 1_1:+68365304 Msa0038860:exon
AGACCTCATGCATGTGCCAC+AGG 0.495599 1_1:-68366123 None:intergenic
ACGTTGGCAATGGGACCCAC+AGG 0.500337 1_1:-68366722 None:intergenic
AGCAGCAACTCTTGTGAAGT+AGG 0.501312 1_1:-68366747 None:intergenic
GGTGAAAGGAGAGAAGGGAT+TGG 0.504657 1_1:-68365206 None:intergenic
GAATGGGTGAAAGGAGAGAA+GGG 0.508769 1_1:-68365211 None:intergenic
TTAGTAATAAATAATACAGC+AGG 0.511514 1_1:+68367574 Msa0038860:three_prime_UTR
AAAGGAGAGAAGGGATTGGA+TGG 0.511715 1_1:-68365202 None:intergenic
TATGGAATATTGGGCTAGAT+GGG 0.511988 1_1:+68366075 Msa0038860:CDS
AAGTAGGGCACGTTGGCAAT+GGG 0.513920 1_1:-68366731 None:intergenic
ATCTTCCATTAGAACACAAA+CGG 0.516336 1_1:-68365486 None:intergenic
CACCATTCGGACAAATTCAA+AGG 0.517507 1_1:+68366948 Msa0038860:CDS
ATTGTAGGGCTTTAAGGTTG+TGG 0.518829 1_1:-68365345 None:intergenic
AGTGTTGTTAGAGAGAGAGA+GGG 0.521837 1_1:-68365278 None:intergenic
CTTTGAATTTGTCCGAATGG+TGG 0.523450 1_1:-68366947 None:intergenic
ATGAAAGGAAATTGAGGAGG+TGG 0.523479 1_1:-68365115 None:intergenic
GTGCAGGAAGTTGAAGAAGT+GGG 0.525266 1_1:+68367388 Msa0038860:intron
ACAGAGACAAGCCAATGAAT+GGG 0.528436 1_1:-68365227 None:intergenic
CTGTTTATTATAGATTCTCA+TGG 0.538973 1_1:+68365681 Msa0038860:CDS
AAAGAAATGAAAGGAAATTG+AGG 0.539095 1_1:-68365121 None:intergenic
GGTGCAGGAAGTTGAAGAAG+TGG 0.541999 1_1:+68367387 Msa0038860:intron
GGGCTGTGTTTACTGTTAGG+AGG 0.545643 1_1:-68365551 None:intergenic
TGAGGAGGTGGTGTTGTGGT+CGG 0.554664 1_1:-68365103 None:intergenic
CAAGCCAATGAATGGGTGAA+AGG 0.555081 1_1:-68365220 None:intergenic
TCTTATGAACCAATCCATCA+TGG 0.562531 1_1:-68366694 None:intergenic
GATGAGTGGGAAATGAAGGT+TGG 0.564852 1_1:-68365256 None:intergenic
TTCCCTGTGGCACATGCATG+AGG 0.571758 1_1:+68366120 Msa0038860:CDS
TGAATGGGTGAAAGGAGAGA+AGG 0.571800 1_1:-68365212 None:intergenic
TTGTTTGTATGATAGGGTAG+TGG 0.576953 1_1:+68365906 Msa0038860:intron
GGTGGAAAGTTCAGCCGCCA+TGG 0.584774 1_1:-68365321 None:intergenic
GCAGCAACTCTTGTGAAGTA+GGG 0.586414 1_1:-68366746 None:intergenic
CAGGAAGTTGAAGAAGTGGG+AGG 0.586564 1_1:+68367391 Msa0038860:intron
TAGACATTACAGCTGCAACT+AGG 0.594222 1_1:-68365628 None:intergenic
AGGAAGTTGAAGAAGTGGGA+GGG 0.595124 1_1:+68367392 Msa0038860:intron
ACACTAACCAGATGAAAACT+GGG 0.600198 1_1:+68365516 Msa0038860:CDS
AACGCAACATCACAAAATTG+TGG 0.602925 1_1:+68365168 Msa0038860:five_prime_UTR
GTCACATCATCGACCAAGAG+AGG 0.605840 1_1:+68366363 Msa0038860:intron
TTGGGCTAGATGGGCTCATG+AGG 0.606671 1_1:+68366084 Msa0038860:CDS
TATGACGGAAACCTCTTAAG+GGG 0.609525 1_1:-68365418 None:intergenic
TACAGCAGCACCAACTGAGA+GGG 0.619847 1_1:-68365964 None:intergenic
TTCTATGGCATGCTTCCCTG+TGG 0.625607 1_1:+68366107 Msa0038860:CDS
ATATATACAAAAGAAATGAA+AGG 0.627298 1_1:-68365130 None:intergenic
GACCTCATGCATGTGCCACA+GGG 0.632725 1_1:-68366122 None:intergenic
AGAGCAATTCGATTAATGCA+TGG 0.641419 1_1:+68367517 Msa0038860:three_prime_UTR
TGTATGATAGGGTAGTGGAG+AGG 0.645728 1_1:+68365911 Msa0038860:intron
AAATTGAGGAGGTGGTGTTG+TGG 0.646197 1_1:-68365107 None:intergenic
TAGATTCTCATGGCAAATGG+AGG 0.648620 1_1:+68365691 Msa0038860:CDS
ACTGCACCAAAGCAGAGACC+AGG 0.649131 1_1:-68366478 None:intergenic
TCCATCATGGACAAACATGT+AGG 0.652573 1_1:-68366681 None:intergenic
GTAGGGCTTTAAGGTTGTGG+CGG 0.654013 1_1:-68365342 None:intergenic
TCACATCATCGACCAAGAGA+GGG 0.657623 1_1:+68366364 Msa0038860:CDS
GAAATGAAAGGAAATTGAGG+AGG 0.658110 1_1:-68365118 None:intergenic
GTGCCAAACATTTCAGACCA+AGG 0.665898 1_1:-68365936 None:intergenic
GTAACCTTTATTCTCCATGG+CGG 0.666735 1_1:+68365307 Msa0038860:exon
TTACAGCAGCACCAACTGAG+AGG 0.672349 1_1:-68365965 None:intergenic
TCTTGTGAAGTAGGGCACGT+TGG 0.672979 1_1:-68366738 None:intergenic
CGTTGGCAATGGGACCCACA+GGG 0.676768 1_1:-68366721 None:intergenic
GGTTCATAAGAGATTCCCTG+TGG 0.688013 1_1:+68366706 Msa0038860:CDS
ATGACGGAAACCTCTTAAGG+GGG 0.694254 1_1:-68365417 None:intergenic
GTTCATAAGAGATTCCCTGT+GGG 0.700599 1_1:+68366707 Msa0038860:CDS
CACTAACCAGATGAAAACTG+GGG 0.723473 1_1:+68365517 Msa0038860:CDS
CCATTCGGACAAATTCAAAG+GGG 0.749285 1_1:+68366950 Msa0038860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATACAAAAGAAATGAA+AGG - chr1_1:68365133-68365152 None:intergenic 15.0%
!!! AAAATGAAATTGGTTAATTT+TGG + chr1_1:68366019-68366038 Msa0038860:intron 15.0%
!!! AATTCAACATTGATTTTTTT+AGG + chr1_1:68366048-68366067 Msa0038860:intron 15.0%
!!! ATTTTTATTTTTTGTGCAAA+TGG + chr1_1:68366882-68366901 Msa0038860:intron 15.0%
!!! TTTTTATTTTTTGTGCAAAT+GGG + chr1_1:68366883-68366902 Msa0038860:intron 15.0%
!!! ATTTTTAGTTGCACAAAAAT+TGG + chr1_1:68365577-68365596 Msa0038860:CDS 20.0%
!!! TCATATGGTTTTTTTAACAA+GGG + chr1_1:68366448-68366467 Msa0038860:CDS 20.0%
!! TTAGTAAATCCCTTAATTAA+CGG + chr1_1:68366530-68366549 Msa0038860:intron 20.0%
!! TAAACAAAAGAAAATATGAG+TGG + chr1_1:68366840-68366859 Msa0038860:intron 20.0%
!! TTAGTAATAAATAATACAGC+AGG + chr1_1:68367574-68367593 Msa0038860:three_prime_UTR 20.0%
! AAAGAAATGAAAGGAAATTG+AGG - chr1_1:68365124-68365143 None:intergenic 25.0%
!!! TGTTGATTTTCTTGTTCTTT+GGG - chr1_1:68365459-68365478 None:intergenic 25.0%
! TTTGTGCAACTAAAAATTGA+GGG - chr1_1:68365574-68365593 None:intergenic 25.0%
!! TTTTGTGCAACTAAAAATTG+AGG - chr1_1:68365575-68365594 None:intergenic 25.0%
! CTGTTTATTATAGATTCTCA+TGG + chr1_1:68365681-68365700 Msa0038860:CDS 25.0%
! ATCAAAATTACTCTGATACA+CGG + chr1_1:68365812-68365831 Msa0038860:intron 25.0%
!!! ATCGTTTTTTGAATGATGTT+TGG + chr1_1:68365882-68365901 Msa0038860:intron 25.0%
!!! TCGTTTTTTGAATGATGTTT+GGG + chr1_1:68365883-68365902 Msa0038860:intron 25.0%
! TCAGCAATTGAAAATGAAAT+TGG + chr1_1:68366009-68366028 Msa0038860:intron 25.0%
!!! CAACATTGATTTTTTTAGGT+AGG + chr1_1:68366052-68366071 Msa0038860:intron 25.0%
!!! TTGATTTTTTTAGGTAGGTA+TGG + chr1_1:68366057-68366076 Msa0038860:intron 25.0%
! TGTGAAAGAAAAGAGAAAAT+GGG - chr1_1:68366172-68366191 None:intergenic 25.0%
! ATGTGAAAGAAAAGAGAAAA+TGG - chr1_1:68366173-68366192 None:intergenic 25.0%
! ATGTGAATAAACAAATGCAT+TGG + chr1_1:68366219-68366238 Msa0038860:intron 25.0%
! AAAACATCATTAAGCTCAAA+TGG - chr1_1:68366391-68366410 None:intergenic 25.0%
!!! CTCATATGGTTTTTTTAACA+AGG + chr1_1:68366447-68366466 Msa0038860:CDS 25.0%
! TCATTTCAGAGAATAAATCA+GGG - chr1_1:68366613-68366632 None:intergenic 25.0%
! CAAGCAAATTCTTAATTACT+TGG - chr1_1:68366778-68366797 None:intergenic 25.0%
! ACAAAAAAAAACCAAGAAGA+GGG - chr1_1:68367023-68367042 None:intergenic 25.0%
! AACAAAAAAAAACCAAGAAG+AGG - chr1_1:68367024-68367043 None:intergenic 25.0%
! GATTATTCATCAATTAAGTG+TGG + chr1_1:68367113-68367132 Msa0038860:intron 25.0%
!!! GTTTAAAAGAATTTTGAGTG+TGG + chr1_1:68367494-68367513 Msa0038860:three_prime_UTR 25.0%
!!! ACAGCATGTTATTTTAATAC+AGG + chr1_1:68367617-68367636 Msa0038860:three_prime_UTR 25.0%
!! TTTGAAGGATTTTGCTATGA+CGG - chr1_1:68365436-68365455 None:intergenic 30.0%
!!! GTGTTGATTTTCTTGTTCTT+TGG - chr1_1:68365460-68365479 None:intergenic 30.0%
ATCTTCCATTAGAACACAAA+CGG - chr1_1:68365489-68365508 None:intergenic 30.0%
TTATAGATTCTCATGGCAAA+TGG + chr1_1:68365688-68365707 Msa0038860:CDS 30.0%
! ATTTGACACCGTAATTTTGT+AGG + chr1_1:68365765-68365784 Msa0038860:intron 30.0%
TTTCAGCTCCTACAAAATTA+CGG - chr1_1:68365776-68365795 None:intergenic 30.0%
! TAAGTGCATGTTTGAAATGA+CGG - chr1_1:68365847-68365866 None:intergenic 30.0%
!! TTTGGGTTGTTTGTATGATA+GGG + chr1_1:68365900-68365919 Msa0038860:intron 30.0%
TTTAGGTAGGTATGGAATAT+TGG + chr1_1:68366065-68366084 Msa0038860:intron 30.0%
TTAGGTAGGTATGGAATATT+GGG + chr1_1:68366066-68366085 Msa0038860:intron 30.0%
! GCAAAATATTCAAGTTAGCA+TGG - chr1_1:68366298-68366317 None:intergenic 30.0%
GATTCAATGCTATTGGTATA+AGG - chr1_1:68366320-68366339 None:intergenic 30.0%
CATCTTTGATTCAATGCTAT+TGG - chr1_1:68366327-68366346 None:intergenic 30.0%
!!! TGGTTTTTTTAACAAGGGAT+TGG + chr1_1:68366453-68366472 Msa0038860:CDS 30.0%
CCAATGAAACCGTTAATTAA+GGG - chr1_1:68366542-68366561 None:intergenic 30.0%
CCTTAATTAACGGTTTCATT+GGG + chr1_1:68366540-68366559 Msa0038860:intron 30.0%
GTCATTTCAGAGAATAAATC+AGG - chr1_1:68366614-68366633 None:intergenic 30.0%
CAAACAAACAACAAAACCAA+AGG - chr1_1:68366922-68366941 None:intergenic 30.0%
! CAAATTTGGATGCATTTTGT+GGG + chr1_1:68367334-68367353 Msa0038860:intron 30.0%
GAAATGAAAGGAAATTGAGG+AGG - chr1_1:68365121-68365140 None:intergenic 35.0%
AACGCAACATCACAAAATTG+TGG + chr1_1:68365168-68365187 Msa0038860:five_prime_UTR 35.0%
ATCGTAACCTTTATTCTCCA+TGG + chr1_1:68365304-68365323 Msa0038860:exon 35.0%
GAAGAAGTTGAGAGATTGTA+GGG - chr1_1:68365362-68365381 None:intergenic 35.0%
! TTCTTGTTCTTTGGGTTTGA+AGG - chr1_1:68365451-68365470 None:intergenic 35.0%
! TTCATCTGGTTAGTGTGTTT+TGG - chr1_1:68365512-68365531 None:intergenic 35.0%
ACACTAACCAGATGAAAACT+GGG + chr1_1:68365516-68365535 Msa0038860:CDS 35.0%
!! GTTTGGGTTGTTTGTATGAT+AGG + chr1_1:68365899-68365918 Msa0038860:intron 35.0%
TTGTTTGTATGATAGGGTAG+TGG + chr1_1:68365906-68365925 Msa0038860:intron 35.0%
! TATGGAATATTGGGCTAGAT+GGG + chr1_1:68366075-68366094 Msa0038860:CDS 35.0%
AAAAGAGAAAATGGGAAGAC+TGG - chr1_1:68366164-68366183 None:intergenic 35.0%
CCCTTAATTAACGGTTTCAT+TGG + chr1_1:68366539-68366558 Msa0038860:intron 35.0%
CCCAATGAAACCGTTAATTA+AGG - chr1_1:68366543-68366562 None:intergenic 35.0%
ACATCCTCATCTTATGACTA+GGG + chr1_1:68366632-68366651 Msa0038860:intron 35.0%
TCTTATGAACCAATCCATCA+TGG - chr1_1:68366697-68366716 None:intergenic 35.0%
TGTGCAAATGGGATCTAATT+TGG + chr1_1:68366894-68366913 Msa0038860:intron 35.0%
ACCATTCGGACAAATTCAAA+GGG + chr1_1:68366949-68366968 Msa0038860:CDS 35.0%
TGTGGAGAAAAGAGAAAAAC+TGG + chr1_1:68367131-68367150 Msa0038860:intron 35.0%
GCTAGTTGAGTAGTACTTAT+GGG + chr1_1:68367213-68367232 Msa0038860:intron 35.0%
CTAGTTGAGTAGTACTTATG+GGG + chr1_1:68367214-68367233 Msa0038860:intron 35.0%
CCACAAAATGCATCCAAATT+TGG - chr1_1:68367336-68367355 None:intergenic 35.0%
! CCAAATTTGGATGCATTTTG+TGG + chr1_1:68367333-68367352 Msa0038860:intron 35.0%
AGCTAGAGAAAGAGATAAGT+AGG + chr1_1:68367422-68367441 Msa0038860:CDS 35.0%
AGGAGAACAAGATCATATAC+TGG + chr1_1:68367442-68367461 Msa0038860:CDS 35.0%
!! CTTTTAAACAGCTCTAGTAC+TGG - chr1_1:68367483-68367502 None:intergenic 35.0%
AGAGCAATTCGATTAATGCA+TGG + chr1_1:68367517-68367536 Msa0038860:three_prime_UTR 35.0%
ATGAAAGGAAATTGAGGAGG+TGG - chr1_1:68365118-68365137 None:intergenic 40.0%
ACAGAGACAAGCCAATGAAT+GGG - chr1_1:68365230-68365249 None:intergenic 40.0%
! AGTGTTGTTAGAGAGAGAGA+GGG - chr1_1:68365281-68365300 None:intergenic 40.0%
! TAGTGTTGTTAGAGAGAGAG+AGG - chr1_1:68365282-68365301 None:intergenic 40.0%
GTAACCTTTATTCTCCATGG+CGG + chr1_1:68365307-68365326 Msa0038860:exon 40.0%
!! ATTGTAGGGCTTTAAGGTTG+TGG - chr1_1:68365348-68365367 None:intergenic 40.0%
TGAGAGATTGTAGGGCTTTA+AGG - chr1_1:68365354-68365373 None:intergenic 40.0%
GGAAGAAGTTGAGAGATTGT+AGG - chr1_1:68365363-68365382 None:intergenic 40.0%
!! ACAGTGTTGGGGTTGTTTTA+GGG - chr1_1:68365391-68365410 None:intergenic 40.0%
!! AACAGTGTTGGGGTTGTTTT+AGG - chr1_1:68365392-68365411 None:intergenic 40.0%
! TATGACGGAAACCTCTTAAG+GGG - chr1_1:68365421-68365440 None:intergenic 40.0%
! CTATGACGGAAACCTCTTAA+GGG - chr1_1:68365422-68365441 None:intergenic 40.0%
CTTCACCGTTTGTGTTCTAA+TGG + chr1_1:68365481-68365500 Msa0038860:CDS 40.0%
CACACTAACCAGATGAAAAC+TGG + chr1_1:68365515-68365534 Msa0038860:CDS 40.0%
CACTAACCAGATGAAAACTG+GGG + chr1_1:68365517-68365536 Msa0038860:CDS 40.0%
! TTTCTTCCCCAGTTTTCATC+TGG - chr1_1:68365526-68365545 None:intergenic 40.0%
TAGACATTACAGCTGCAACT+AGG - chr1_1:68365631-68365650 None:intergenic 40.0%
!! TAGCTTTGGTGTTACCTCTA+TGG + chr1_1:68365649-68365668 Msa0038860:CDS 40.0%
AACAGCTAAGATTGCCATAG+AGG - chr1_1:68365666-68365685 None:intergenic 40.0%
TAGATTCTCATGGCAAATGG+AGG + chr1_1:68365691-68365710 Msa0038860:CDS 40.0%
! GTTCCTTGGTCTGAAATGTT+TGG + chr1_1:68365933-68365952 Msa0038860:CDS 40.0%
! GTATGGAATATTGGGCTAGA+TGG + chr1_1:68366074-68366093 Msa0038860:CDS 40.0%
TATGAGAGAAGAGCAATTGC+AGG - chr1_1:68366433-68366452 None:intergenic 40.0%
GCAATTGCTCTTCTCTCATA+TGG + chr1_1:68366433-68366452 Msa0038860:CDS 40.0%
GACATCCTCATCTTATGACT+AGG + chr1_1:68366631-68366650 Msa0038860:intron 40.0%
AAGACCCTAGTCATAAGATG+AGG - chr1_1:68366639-68366658 None:intergenic 40.0%
TCATCTTATGACTAGGGTCT+TGG + chr1_1:68366638-68366657 Msa0038860:intron 40.0%
TGACTAGGGTCTTGGAATTA+CGG + chr1_1:68366646-68366665 Msa0038860:intron 40.0%
GTCTTGGAATTACGGTGTTT+GGG + chr1_1:68366654-68366673 Msa0038860:CDS 40.0%
TCCATCATGGACAAACATGT+AGG - chr1_1:68366684-68366703 None:intergenic 40.0%
!! CATGTTTGTCCATGATGGAT+TGG + chr1_1:68366685-68366704 Msa0038860:CDS 40.0%
GTTCATAAGAGATTCCCTGT+GGG + chr1_1:68366707-68366726 Msa0038860:CDS 40.0%
CTTTGAATTTGTCCGAATGG+TGG - chr1_1:68366950-68366969 None:intergenic 40.0%
CACCATTCGGACAAATTCAA+AGG + chr1_1:68366948-68366967 Msa0038860:CDS 40.0%
CCATTCGGACAAATTCAAAG+GGG + chr1_1:68366950-68366969 Msa0038860:CDS 40.0%
!! AAATTCAAAGGGGTGCCATA+TGG + chr1_1:68366960-68366979 Msa0038860:CDS 40.0%
! GTGCCATATGGACTCTTTTT+AGG + chr1_1:68366972-68366991 Msa0038860:CDS 40.0%
GGTCCTAAAAAGAGTCCATA+TGG - chr1_1:68366978-68366997 None:intergenic 40.0%
!!! TGGACTCTTTTTAGGACCAA+AGG + chr1_1:68366980-68366999 Msa0038860:CDS 40.0%
AAGAAGAGGGAATGTGAATG+TGG - chr1_1:68367010-68367029 None:intergenic 40.0%
ACATTCACATTCCCTCTTCT+TGG + chr1_1:68367009-68367028 Msa0038860:intron 40.0%
CGCTAGTTGAGTAGTACTTA+TGG + chr1_1:68367212-68367231 Msa0038860:intron 40.0%
GGTGCTAATAACACATTGCT+TGG + chr1_1:68367355-68367374 Msa0038860:intron 40.0%
! AAATTGAGGAGGTGGTGTTG+TGG - chr1_1:68365110-68365129 None:intergenic 45.0%
AAAGGAGAGAAGGGATTGGA+TGG - chr1_1:68365205-68365224 None:intergenic 45.0%
GAATGGGTGAAAGGAGAGAA+GGG - chr1_1:68365214-68365233 None:intergenic 45.0%
TGAATGGGTGAAAGGAGAGA+AGG - chr1_1:68365215-68365234 None:intergenic 45.0%
CTCTCCTTTCACCCATTCAT+TGG + chr1_1:68365216-68365235 Msa0038860:five_prime_UTR 45.0%
CAAGCCAATGAATGGGTGAA+AGG - chr1_1:68365223-68365242 None:intergenic 45.0%
GACAGAGACAAGCCAATGAA+TGG - chr1_1:68365231-68365250 None:intergenic 45.0%
GATGAGTGGGAAATGAAGGT+TGG - chr1_1:68365259-68365278 None:intergenic 45.0%
!!! TTGGGGTTGTTTTAGGGGAA+GGG - chr1_1:68365385-68365404 None:intergenic 45.0%
!!! CAGTGTTGGGGTTGTTTTAG+GGG - chr1_1:68365390-68365409 None:intergenic 45.0%
! ATGACGGAAACCTCTTAAGG+GGG - chr1_1:68365420-68365439 None:intergenic 45.0%
! GCTATGACGGAAACCTCTTA+AGG - chr1_1:68365423-68365442 None:intergenic 45.0%
TGAGGGCTGTGTTTACTGTT+AGG - chr1_1:68365557-68365576 None:intergenic 45.0%
! GCAGCTGTAATGTCTAGCTT+TGG + chr1_1:68365635-68365654 Msa0038860:CDS 45.0%
!! TGTATGATAGGGTAGTGGAG+AGG + chr1_1:68365911-68365930 Msa0038860:intron 45.0%
GTGCCAAACATTTCAGACCA+AGG - chr1_1:68365939-68365958 None:intergenic 45.0%
TGGGAAGACTGGTGAAGAAT+CGG - chr1_1:68366153-68366172 None:intergenic 45.0%
TCACATCATCGACCAAGAGA+GGG + chr1_1:68366364-68366383 Msa0038860:CDS 45.0%
! TTTAACAAGGGATTGGTGCC+TGG + chr1_1:68366460-68366479 Msa0038860:CDS 45.0%
GGTCTTGGAATTACGGTGTT+TGG + chr1_1:68366653-68366672 Msa0038860:CDS 45.0%
GCCTACATGTTTGTCCATGA+TGG + chr1_1:68366680-68366699 Msa0038860:CDS 45.0%
GGTTCATAAGAGATTCCCTG+TGG + chr1_1:68366706-68366725 Msa0038860:CDS 45.0%
GCAGCAACTCTTGTGAAGTA+GGG - chr1_1:68366749-68366768 None:intergenic 45.0%
AGCAGCAACTCTTGTGAAGT+AGG - chr1_1:68366750-68366769 None:intergenic 45.0%
!! GGGATCTAATTTGGTGCCTT+TGG + chr1_1:68366903-68366922 Msa0038860:intron 45.0%
TTGTTTGCAGCTCCACCATT+CGG + chr1_1:68366935-68366954 Msa0038860:intron 45.0%
CCCCTTTGAATTTGTCCGAA+TGG - chr1_1:68366953-68366972 None:intergenic 45.0%
ATGTGAATGTGGCTGACCTT+TGG - chr1_1:68366999-68367018 None:intergenic 45.0%
AGTGTGCTCGTAGCCAAATT+TGG + chr1_1:68367320-68367339 Msa0038860:intron 45.0%
CACATTGCTTGGCTGACATA+TGG + chr1_1:68367366-68367385 Msa0038860:intron 45.0%
GTGCAGGAAGTTGAAGAAGT+GGG + chr1_1:68367388-68367407 Msa0038860:intron 45.0%
AGGAAGTTGAAGAAGTGGGA+GGG + chr1_1:68367392-68367411 Msa0038860:intron 45.0%
GAGAGAAGGGATTGGATGGA+TGG - chr1_1:68365201-68365220 None:intergenic 50.0%
GGTGAAAGGAGAGAAGGGAT+TGG - chr1_1:68365209-68365228 None:intergenic 50.0%
GAGGGATGAGTGGGAAATGA+AGG - chr1_1:68365263-68365282 None:intergenic 50.0%
AGAGAGAGAGAGGGATGAGT+GGG - chr1_1:68365272-68365291 None:intergenic 50.0%
TAGAGAGAGAGAGGGATGAG+TGG - chr1_1:68365273-68365292 None:intergenic 50.0%
TCAGCCGCCATGGAGAATAA+AGG - chr1_1:68365314-68365333 None:intergenic 50.0%
!! GTAGGGCTTTAAGGTTGTGG+CGG - chr1_1:68365345-68365364 None:intergenic 50.0%
!!! TGGGGTTGTTTTAGGGGAAG+GGG - chr1_1:68365384-68365403 None:intergenic 50.0%
!!! GTTGGGGTTGTTTTAGGGGA+AGG - chr1_1:68365386-68365405 None:intergenic 50.0%
AGGGGGTGAAGAACAGTGTT+GGG - chr1_1:68365403-68365422 None:intergenic 50.0%
AAGGGGGTGAAGAACAGTGT+TGG - chr1_1:68365404-68365423 None:intergenic 50.0%
CTGTTCTTCACCCCCTTAAG+AGG + chr1_1:68365407-68365426 Msa0038860:CDS 50.0%
GGGCTGTGTTTACTGTTAGG+AGG - chr1_1:68365554-68365573 None:intergenic 50.0%
TACAGCAGCACCAACTGAGA+GGG - chr1_1:68365967-68365986 None:intergenic 50.0%
TTACAGCAGCACCAACTGAG+AGG - chr1_1:68365968-68365987 None:intergenic 50.0%
! GATGGGCTCATGAGGTTCTA+TGG + chr1_1:68366092-68366111 Msa0038860:CDS 50.0%
TTCTATGGCATGCTTCCCTG+TGG + chr1_1:68366107-68366126 Msa0038860:CDS 50.0%
GTCACATCATCGACCAAGAG+AGG + chr1_1:68366363-68366382 Msa0038860:intron 50.0%
AGCTCAAATGGTCCCTCTCT+TGG - chr1_1:68366379-68366398 None:intergenic 50.0%
AAGTAGGGCACGTTGGCAAT+GGG - chr1_1:68366734-68366753 None:intergenic 50.0%
TCTTGTGAAGTAGGGCACGT+TGG - chr1_1:68366741-68366760 None:intergenic 50.0%
GGTGCAGGAAGTTGAAGAAG+TGG + chr1_1:68367387-68367406 Msa0038860:intron 50.0%
CAGGAAGTTGAAGAAGTGGG+AGG + chr1_1:68367391-68367410 Msa0038860:intron 50.0%
!! TGAGGAGGTGGTGTTGTGGT+CGG - chr1_1:68365106-68365125 None:intergenic 55.0%
GGGGGTGAAGAACAGTGTTG+GGG - chr1_1:68365402-68365421 None:intergenic 55.0%
!! AGGGTAGTGGAGAGGTTCCT+TGG + chr1_1:68365919-68365938 Msa0038860:intron 55.0%
GGCACATTTGCCCTCTCAGT+TGG + chr1_1:68365954-68365973 Msa0038860:CDS 55.0%
! TTGGGCTAGATGGGCTCATG+AGG + chr1_1:68366084-68366103 Msa0038860:CDS 55.0%
TTCCCTGTGGCACATGCATG+AGG + chr1_1:68366120-68366139 Msa0038860:CDS 55.0%
GACCTCATGCATGTGCCACA+GGG - chr1_1:68366125-68366144 None:intergenic 55.0%
AGACCTCATGCATGTGCCAC+AGG - chr1_1:68366126-68366145 None:intergenic 55.0%
! TTGGTGCCTGGTCTCTGCTT+TGG + chr1_1:68366472-68366491 Msa0038860:CDS 55.0%
ACTGCACCAAAGCAGAGACC+AGG - chr1_1:68366481-68366500 None:intergenic 55.0%
GAAGTAGGGCACGTTGGCAA+TGG - chr1_1:68366735-68366754 None:intergenic 55.0%
GCTTGGCTGACATATGGTGC+AGG + chr1_1:68367372-68367391 Msa0038860:intron 55.0%
GGTGGAAAGTTCAGCCGCCA+TGG - chr1_1:68365324-68365343 None:intergenic 60.0%
!! GGGCTTTAAGGTTGTGGCGG+TGG - chr1_1:68365342-68365361 None:intergenic 60.0%
CGTTGGCAATGGGACCCACA+GGG - chr1_1:68366724-68366743 None:intergenic 60.0%
ACGTTGGCAATGGGACCCAC+AGG - chr1_1:68366725-68366744 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 68365097 68367673 68365097 ID=Msa0038860;Name=Msa0038860
chr1_1 mRNA 68365097 68367673 68365097 ID=Msa0038860-mRNA-1;Parent=Msa0038860;Name=Msa0038860-mRNA-1;_AED=0.12;_eAED=0.12;_QI=226|1|1|1|1|1|7|202|306
chr1_1 exon 68365097 68365712 68365097 ID=Msa0038860-mRNA-1:exon:22245;Parent=Msa0038860-mRNA-1
chr1_1 exon 68365921 68365983 68365921 ID=Msa0038860-mRNA-1:exon:22246;Parent=Msa0038860-mRNA-1
chr1_1 exon 68366070 68366141 68366070 ID=Msa0038860-mRNA-1:exon:22247;Parent=Msa0038860-mRNA-1
chr1_1 exon 68366364 68366498 68366364 ID=Msa0038860-mRNA-1:exon:22248;Parent=Msa0038860-mRNA-1
chr1_1 exon 68366653 68366778 68366653 ID=Msa0038860-mRNA-1:exon:22249;Parent=Msa0038860-mRNA-1
chr1_1 exon 68366945 68367001 68366945 ID=Msa0038860-mRNA-1:exon:22250;Parent=Msa0038860-mRNA-1
chr1_1 exon 68367394 68367673 68367394 ID=Msa0038860-mRNA-1:exon:22251;Parent=Msa0038860-mRNA-1
chr1_1 five_prime_UTR 68365097 68365322 68365097 ID=Msa0038860-mRNA-1:five_prime_utr;Parent=Msa0038860-mRNA-1
chr1_1 CDS 68365323 68365712 68365323 ID=Msa0038860-mRNA-1:cds;Parent=Msa0038860-mRNA-1
chr1_1 CDS 68365921 68365983 68365921 ID=Msa0038860-mRNA-1:cds;Parent=Msa0038860-mRNA-1
chr1_1 CDS 68366070 68366141 68366070 ID=Msa0038860-mRNA-1:cds;Parent=Msa0038860-mRNA-1
chr1_1 CDS 68366364 68366498 68366364 ID=Msa0038860-mRNA-1:cds;Parent=Msa0038860-mRNA-1
chr1_1 CDS 68366653 68366778 68366653 ID=Msa0038860-mRNA-1:cds;Parent=Msa0038860-mRNA-1
chr1_1 CDS 68366945 68367001 68366945 ID=Msa0038860-mRNA-1:cds;Parent=Msa0038860-mRNA-1
chr1_1 CDS 68367394 68367471 68367394 ID=Msa0038860-mRNA-1:cds;Parent=Msa0038860-mRNA-1
chr1_1 three_prime_UTR 68367472 68367673 68367472 ID=Msa0038860-mRNA-1:three_prime_utr;Parent=Msa0038860-mRNA-1
Gene Sequence

>Msa0038860

ATGGCGGCTGAACTTTCCACCGCCACAACCTTAAAGCCCTACAATCTCTCAACTTCTTCCCCTTCCCCTAAAACAACCCCAACACTGTTCTTCACCCCCTTAAGAGGTTTCCGTCATAGCAAAATCCTTCAAACCCAAAGAACAAGAAAATCAACACGCTTCACCGTTTGTGTTCTAATGGAAGATCCAAAACACACTAACCAGATGAAAACTGGGGAAGAAATAGAACCTCCTAACAGTAAACACAGCCCTCAATTTTTAGTTGCACAAAAATTGGCGAGAAAGAAGTCTCAAAGATTCACTTACCTAGTTGCAGCTGTAATGTCTAGCTTTGGTGTTACCTCTATGGCAATCTTAGCTGTTTATTATAGATTCTCATGGCAAATGGAGGGTAGTGGAGAGGTTCCTTGGTCTGAAATGTTTGGCACATTTGCCCTCTCAGTTGGTGCTGCTGTAGGTATGGAATATTGGGCTAGATGGGCTCATGAGGTTCTATGGCATGCTTCCCTGTGGCACATGCATGAGTCACATCATCGACCAAGAGAGGGACCATTTGAGCTTAATGATGTTTTTGCTATAATCAACGCTGTTCCTGCAATTGCTCTTCTCTCATATGGTTTTTTTAACAAGGGATTGGTGCCTGGTCTCTGCTTTGGTGCAGGTCTTGGAATTACGGTGTTTGGGATTGCCTACATGTTTGTCCATGATGGATTGGTTCATAAGAGATTCCCTGTGGGTCCCATTGCCAACGTGCCCTACTTCACAAGAGTTGCTGCTGCTCACCAACTCCACCATTCGGACAAATTCAAAGGGGTGCCATATGGACTCTTTTTAGGACCAAAGGAAGTTGAAGAAGTGGGAGGGATAGAAGAGCTAGAGAAAGAGATAAGTAGGAGAACAAGATCATATACTGGCTCATGA

Protein sequence

>Msa0038860

MAAELSTATTLKPYNLSTSSPSPKTTPTLFFTPLRGFRHSKILQTQRTRKSTRFTVCVLMEDPKHTNQMKTGEEIEPPNSKHSPQFLVAQKLARKKSQRFTYLVAAVMSSFGVTSMAILAVYYRFSWQMEGSGEVPWSEMFGTFALSVGAAVGMEYWARWAHEVLWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSYGFFNKGLVPGLCFGAGLGITVFGIAYMFVHDGLVHKRFPVGPIANVPYFTRVAAAHQLHHSDKFKGVPYGLFLGPKEVEEVGGIEELEKEISRRTRSYTGS*