Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684330 | XP_013456160.1 | 95.141 | 391 | 18 | 1 | 1 | 390 | 4 | 394 | 0.0 | 686 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684330 | sp|Q688R1|MTP1_ORYSJ | 43.095 | 420 | 200 | 6 | 3 | 390 | 4 | 416 | 5.93e-101 | 308 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684330 | A0A072ULB2 | 95.141 | 391 | 18 | 1 | 1 | 390 | 4 | 394 | 0.0 | 686 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0096450 | Msa0684330 | 0.806725 | 7.154818e-50 | -8.615850e-47 |
| Msa0615310 | Msa0684330 | 0.818980 | 1.476248e-52 | -8.615850e-47 |
| Msa0633060 | Msa0684330 | 0.831916 | 1.272835e-55 | -8.615850e-47 |
| Msa0644820 | Msa0684330 | 0.874187 | 8.216052e-68 | -8.615850e-47 |
| Msa0647830 | Msa0684330 | 0.813953 | 1.971380e-51 | -8.615850e-47 |
| Msa0648080 | Msa0684330 | 0.802278 | 6.050936e-49 | -8.615850e-47 |
| Msa0657970 | Msa0684330 | 0.827851 | 1.244934e-54 | -8.615850e-47 |
| Msa0662650 | Msa0684330 | 0.802948 | 4.402051e-49 | -8.615850e-47 |
| Msa0684330 | Msa0688070 | 0.814584 | 1.430039e-51 | -8.615850e-47 |
| Msa0684330 | Msa0690440 | 0.810416 | 1.165400e-50 | -8.615850e-47 |
| Msa0684330 | Msa0698360 | 0.815869 | 7.409584e-52 | -8.615850e-47 |
| Msa0684330 | Msa0708860 | 0.805962 | 1.036362e-49 | -8.615850e-47 |
| Msa0684330 | Msa0766630 | 0.806793 | 6.922599e-50 | -8.615850e-47 |
| Msa0684330 | Msa0790510 | 0.823159 | 1.609462e-53 | -8.615850e-47 |
| Msa0684330 | Msa0843260 | 0.805735 | 1.156707e-49 | -8.615850e-47 |
| Msa0684330 | Msa1044420 | 0.808354 | 3.227089e-50 | -8.615850e-47 |
| Msa0684330 | Msa1082500 | 0.827827 | 1.261365e-54 | -8.615850e-47 |
| Msa0684330 | Msa1098400 | 0.802759 | 4.815747e-49 | -8.615850e-47 |
| Msa0684330 | Msa1100480 | 0.801524 | 8.644248e-49 | -8.615850e-47 |
| Msa0684330 | Msa1162550 | -0.817625 | 2.992343e-52 | -8.615850e-47 |
| Msa0684330 | Msa1224480 | 0.808996 | 2.353160e-50 | -8.615850e-47 |
| Msa0684330 | Msa1279210 | 0.800600 | 1.335883e-48 | -8.615850e-47 |
| Msa0684330 | Msa1283860 | 0.812588 | 3.931287e-51 | -8.615850e-47 |
| Msa0684330 | Msa1392260 | 0.801453 | 8.942559e-49 | -8.615850e-47 |
| Msa0684330 | Msa1401290 | 0.814654 | 1.379963e-51 | -8.615850e-47 |
| Msa0684330 | Msa1451620 | -0.813783 | 2.148850e-51 | -8.615850e-47 |
| Msa0684330 | Msa1454860 | 0.810593 | 1.067051e-50 | -8.615850e-47 |
| Msa0684330 | Msa1462840 | 0.816222 | 6.181957e-52 | -8.615850e-47 |
| Msa0122590 | Msa0684330 | 0.806933 | 6.465763e-50 | -8.615850e-47 |
| Msa0135820 | Msa0684330 | 0.802681 | 4.999923e-49 | -8.615850e-47 |
| Msa0166870 | Msa0684330 | 0.817169 | 3.790561e-52 | -8.615850e-47 |
| Msa0175390 | Msa0684330 | 0.802228 | 6.196198e-49 | -8.615850e-47 |
| Msa0178860 | Msa0684330 | -0.803385 | 3.574413e-49 | -8.615850e-47 |
| Msa0188830 | Msa0684330 | 0.808290 | 3.330563e-50 | -8.615850e-47 |
| Msa0191910 | Msa0684330 | 0.804939 | 1.697504e-49 | -8.615850e-47 |
| Msa0234020 | Msa0684330 | 0.800056 | 1.723303e-48 | -8.615850e-47 |
| Msa0431690 | Msa0684330 | 0.815735 | 7.939946e-52 | -8.615850e-47 |
| Msa0477130 | Msa0684330 | -0.812236 | 4.693746e-51 | -8.615850e-47 |
| Msa0269450 | Msa0684330 | 0.802926 | 4.449942e-49 | -8.615850e-47 |
| Msa0270100 | Msa0684330 | 0.814037 | 1.888985e-51 | -8.615850e-47 |
| Msa0288100 | Msa0684330 | 0.801812 | 7.545813e-49 | -8.615850e-47 |
| Msa0484780 | Msa0684330 | 0.818364 | 2.037480e-52 | -8.615850e-47 |
| Msa0512900 | Msa0684330 | 0.803387 | 3.571689e-49 | -8.615850e-47 |
| Msa0515010 | Msa0684330 | 0.803912 | 2.779014e-49 | -8.615850e-47 |
| Msa0536220 | Msa0684330 | 0.827833 | 1.257694e-54 | -8.615850e-47 |
| Msa0553460 | Msa0684330 | 0.817327 | 3.492403e-52 | -8.615850e-47 |
| Msa0555020 | Msa0684330 | 0.800138 | 1.659117e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684330 | MtrunA17_Chr4g0032191 | 95.141 | 391 | 18 | 1 | 1 | 390 | 4 | 394 | 0.0 | 686 |
| Msa0684330 | MtrunA17_Chr2g0297881 | 47.230 | 379 | 175 | 5 | 34 | 390 | 32 | 407 | 2.79e-102 | 308 |
| Msa0684330 | MtrunA17_Chr8g0345881 | 47.397 | 365 | 179 | 3 | 31 | 390 | 29 | 385 | 3.25e-99 | 300 |
| Msa0684330 | MtrunA17_Chr6g0475611 | 32.673 | 101 | 68 | 0 | 46 | 146 | 420 | 520 | 6.30e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684330 | AT2G46800.5 | 47.268 | 366 | 180 | 4 | 34 | 390 | 36 | 397 | 2.02e-99 | 301 |
| Msa0684330 | AT2G46800.1 | 47.268 | 366 | 180 | 4 | 34 | 390 | 36 | 397 | 2.02e-99 | 301 |
| Msa0684330 | AT2G46800.3 | 47.268 | 366 | 180 | 4 | 34 | 390 | 36 | 397 | 2.02e-99 | 301 |
| Msa0684330 | AT2G46800.4 | 47.268 | 366 | 180 | 4 | 34 | 390 | 36 | 397 | 2.02e-99 | 301 |
| Msa0684330 | AT2G46800.2 | 47.268 | 366 | 180 | 4 | 34 | 390 | 36 | 397 | 2.02e-99 | 301 |
| Msa0684330 | AT3G58810.2 | 45.119 | 379 | 147 | 5 | 34 | 390 | 52 | 391 | 1.58e-97 | 296 |
| Msa0684330 | AT3G58810.1 | 45.119 | 379 | 147 | 5 | 34 | 390 | 91 | 430 | 1.14e-96 | 295 |
| Msa0684330 | AT2G29410.1 | 54.248 | 153 | 70 | 0 | 238 | 390 | 221 | 373 | 5.51e-59 | 196 |
| Msa0684330 | AT3G61940.1 | 54.362 | 149 | 68 | 0 | 242 | 390 | 185 | 333 | 9.79e-49 | 168 |
| Msa0684330 | AT2G04620.1 | 24.808 | 391 | 239 | 9 | 46 | 390 | 413 | 794 | 7.38e-26 | 110 |
| Msa0684330 | AT2G04620.2 | 23.636 | 385 | 239 | 8 | 46 | 390 | 245 | 614 | 7.51e-24 | 103 |
Find 76 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATATCTGTTCAGTTAATT+TGG | 0.188289 | 4_4:+47679662 | Msa0684330:CDS |
| ACTGATATGATTCAATCTTT+TGG | 0.253584 | 4_4:+47680072 | Msa0684330:CDS |
| ATGTTTGCAATTGCCACATT+TGG | 0.260134 | 4_4:+47679760 | Msa0684330:CDS |
| TTATGGTTGTTGAATTTATT+GGG | 0.272631 | 4_4:+47679479 | Msa0684330:CDS |
| CATGATCATCATCATGGTTT+TGG | 0.274322 | 4_4:+47679820 | Msa0684330:CDS |
| CAGTTAATTTGGTTCATATC+TGG | 0.275924 | 4_4:+47679673 | Msa0684330:CDS |
| CAACGCCTCATCAATCTTTC+GGG | 0.279334 | 4_4:+47679611 | Msa0684330:CDS |
| GTTATGGTTGTTGAATTTAT+TGG | 0.283241 | 4_4:+47679478 | Msa0684330:CDS |
| CTGTTTGCAGTGTGGGCTTC+GGG | 0.284180 | 4_4:+47679580 | Msa0684330:CDS |
| TCTGTTTGCAGTGTGGGCTT+CGG | 0.306327 | 4_4:+47679579 | Msa0684330:CDS |
| TGCAGTGTGGGCTTCGGGTT+GGG | 0.309326 | 4_4:+47679585 | Msa0684330:CDS |
| GCAACGCCTCATCAATCTTT+CGG | 0.330114 | 4_4:+47679610 | Msa0684330:CDS |
| AGGTTCACGATTTGCATGTT+TGG | 0.334194 | 4_4:+47680301 | Msa0684330:CDS |
| AGATCAACAATAAACCATTC+TGG | 0.344512 | 4_4:-47680129 | None:intergenic |
| TGTTTGCAATTGCCACATTT+GGG | 0.358852 | 4_4:+47679761 | Msa0684330:CDS |
| CCACAAAGGAAAAGAGTGTT+GGG | 0.362291 | 4_4:+47679401 | Msa0684330:CDS |
| GGTTCACGATTTGCATGTTT+GGG | 0.363513 | 4_4:+47680302 | Msa0684330:CDS |
| AATCTCTCTGTTTGCAGTGT+GGG | 0.380756 | 4_4:+47679573 | Msa0684330:CDS |
| GTTTGTTCTTAATTGTATCA+TGG | 0.397321 | 4_4:+47679783 | Msa0684330:CDS |
| ACAAGATCGGTAGAGGAAAC+TGG | 0.400121 | 4_4:+47679322 | Msa0684330:CDS |
| TGATTGCTGGAGGAGTAATA+TGG | 0.423479 | 4_4:+47680100 | Msa0684330:CDS |
| GATAGTGACAATGTTGTCAT+AGG | 0.444055 | 4_4:-47679349 | None:intergenic |
| AATGTCATTCAGCTGGAAAA+TGG | 0.445646 | 4_4:+47680252 | Msa0684330:CDS |
| CTTCTTACCATTTGAAAGCA+TGG | 0.454505 | 4_4:-47679998 | None:intergenic |
| ACCGATCTTGTATCTGAGAT+AGG | 0.456563 | 4_4:-47679310 | None:intergenic |
| AACCTTACCATGCTTTCAAA+TGG | 0.457120 | 4_4:+47679991 | Msa0684330:CDS |
| TCGGATCATGGTCATGATCA+TGG | 0.458583 | 4_4:+47679847 | Msa0684330:CDS |
| CATTGGCAGAGTAGTACTTA+AGG | 0.459268 | 4_4:-47680181 | None:intergenic |
| TTGCAGTGTGGGCTTCGGGT+TGG | 0.474328 | 4_4:+47679584 | Msa0684330:CDS |
| AAATCAATGGAATTTATGCC+AGG | 0.476599 | 4_4:-47680372 | None:intergenic |
| GCACATTTACTTTCTGACAT+TGG | 0.478131 | 4_4:+47679541 | Msa0684330:CDS |
| GTACTACTCTGCCAATGCTT+AGG | 0.481166 | 4_4:+47680187 | Msa0684330:CDS |
| CATGGATCGGATCATGATCA+TGG | 0.481401 | 4_4:+47679934 | Msa0684330:CDS |
| CATTTACTTTCTGACATTGG+TGG | 0.481890 | 4_4:+47679544 | Msa0684330:CDS |
| TCCACAAAGGAAAAGAGTGT+TGG | 0.485875 | 4_4:+47679400 | Msa0684330:CDS |
| TGAGATTAATGTCATTCAGC+TGG | 0.490788 | 4_4:+47680245 | Msa0684330:CDS |
| GTTTCTATCTTGTCATGTAG+TGG | 0.490808 | 4_4:+47680344 | Msa0684330:CDS |
| AAATGGTCTTAGATGTATCA+AGG | 0.494424 | 4_4:+47680269 | Msa0684330:CDS |
| AATCACAGAAAGTAAATCAA+TGG | 0.499089 | 4_4:-47680385 | None:intergenic |
| TATGGTTGTTGAATTTATTG+GGG | 0.502724 | 4_4:+47679480 | Msa0684330:CDS |
| CTTGGTCATGATCATCATCA+TGG | 0.511115 | 4_4:+47679814 | Msa0684330:CDS |
| CTCAGATACAAGATCGGTAG+AGG | 0.511313 | 4_4:+47679315 | Msa0684330:CDS |
| CATGTTTGGGCTATAACAGT+GGG | 0.523467 | 4_4:+47680315 | Msa0684330:CDS |
| CAATCTCTCTGTTTGCAGTG+TGG | 0.530045 | 4_4:+47679572 | Msa0684330:CDS |
| TACCATTTGAAAGCATGGTA+AGG | 0.531755 | 4_4:-47679993 | None:intergenic |
| GGTCATCATCATCGTCATCA+TGG | 0.537096 | 4_4:+47679886 | Msa0684330:CDS |
| TAGATGTATCAAGGGAGTGC+AGG | 0.541398 | 4_4:+47680278 | Msa0684330:CDS |
| TGTCATGTAGTGGCTGAACC+TGG | 0.544206 | 4_4:+47680354 | Msa0684330:CDS |
| GTAACGATACAAATTGAGTA+AGG | 0.546037 | 4_4:+47680444 | Msa0684330:CDS |
| CGGATCATGGTCATGATCAT+GGG | 0.547513 | 4_4:+47679848 | Msa0684330:CDS |
| TCACATGCAAATAAGCCCCT+TGG | 0.552692 | 4_4:-47680047 | None:intergenic |
| GCATGTTTGGGCTATAACAG+TGG | 0.554794 | 4_4:+47680314 | Msa0684330:CDS |
| AGTGTGGGCTTCGGGTTGGG+AGG | 0.561132 | 4_4:+47679588 | Msa0684330:CDS |
| CATAGTCATCATCAATGCCA+TGG | 0.570221 | 4_4:+47679916 | Msa0684330:CDS |
| CATGATCATGATCCGATCCA+TGG | 0.570779 | 4_4:-47679933 | None:intergenic |
| GATTGCTGGAGGAGTAATAT+GGG | 0.578367 | 4_4:+47680101 | Msa0684330:CDS |
| TTTCGGGTATAATCGACTTG+AGG | 0.584985 | 4_4:+47679627 | Msa0684330:CDS |
| TAATATGGGCTAAACCAGAA+TGG | 0.603141 | 4_4:+47680115 | Msa0684330:CDS |
| TGAATGACATTAATCTCACT+TGG | 0.605618 | 4_4:-47680240 | None:intergenic |
| TCATCATCAATGCCATGGAT+CGG | 0.606622 | 4_4:+47679921 | Msa0684330:CDS |
| AATGGTCTTAGATGTATCAA+GGG | 0.613237 | 4_4:+47680270 | Msa0684330:CDS |
| CACAAAGGAAAAGAGTGTTG+GGG | 0.615604 | 4_4:+47679402 | Msa0684330:CDS |
| GCCTATCTCAGATACAAGAT+CGG | 0.617081 | 4_4:+47679309 | Msa0684330:CDS |
| ATTAAGAACAAACCCAAATG+TGG | 0.618269 | 4_4:-47679773 | None:intergenic |
| ATCGGATCATGATCATGGGA+TGG | 0.619747 | 4_4:+47679939 | Msa0684330:CDS |
| ACTACCTAAAATAACTGATG+AGG | 0.620549 | 4_4:+47679966 | Msa0684330:CDS |
| ATGTATCAAGGGAGTGCAGG+AGG | 0.626208 | 4_4:+47680281 | Msa0684330:CDS |
| GGATCATGATCATGGGATGG+AGG | 0.643809 | 4_4:+47679942 | Msa0684330:CDS |
| ATGGATCGGATCATGATCAT+GGG | 0.645079 | 4_4:+47679935 | Msa0684330:CDS |
| ATGGTTGTTGAATTTATTGG+GGG | 0.645272 | 4_4:+47679481 | Msa0684330:CDS |
| ACAAAGGAAAAGAGTGTTGG+GGG | 0.661810 | 4_4:+47679403 | Msa0684330:CDS |
| CATGGGCACAGTCATGATCA+CGG | 0.664788 | 4_4:+47679865 | Msa0684330:CDS |
| TTTGGAGTGATGATTGCTGG+AGG | 0.665023 | 4_4:+47680090 | Msa0684330:CDS |
| TTTGAATATAAATATCCAAG+GGG | 0.673608 | 4_4:+47680032 | Msa0684330:CDS |
| ATGATCATGACCATGATCCG+AGG | 0.682882 | 4_4:-47679845 | None:intergenic |
| TTATACCCGAAAGATTGATG+AGG | 0.706716 | 4_4:-47679616 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGAATATAAATATCCAA+GGG | + | chr4_4:47680031-47680050 | Msa0684330:CDS | 15.0% |
| !!! | TTTTGAATATAAATATCCAA+GGG | + | chr4_4:47680031-47680050 | Msa0684330:CDS | 15.0% |
| !! | TTATGGTTGTTGAATTTATT+GGG | + | chr4_4:47679479-47679498 | Msa0684330:CDS | 20.0% |
| !! | TTATATCTGTTCAGTTAATT+TGG | + | chr4_4:47679662-47679681 | Msa0684330:CDS | 20.0% |
| !!! | TTAATTGTATCATGGTTTTA+TGG | + | chr4_4:47679791-47679810 | Msa0684330:CDS | 20.0% |
| !!! | GTTTTGAATATAAATATCCA+AGG | + | chr4_4:47680030-47680049 | Msa0684330:CDS | 20.0% |
| !! | TTTGAATATAAATATCCAAG+GGG | + | chr4_4:47680032-47680051 | Msa0684330:CDS | 20.0% |
| !! | TTATGGTTGTTGAATTTATT+GGG | + | chr4_4:47679479-47679498 | Msa0684330:CDS | 20.0% |
| !! | TTATATCTGTTCAGTTAATT+TGG | + | chr4_4:47679662-47679681 | Msa0684330:CDS | 20.0% |
| !!! | TTAATTGTATCATGGTTTTA+TGG | + | chr4_4:47679791-47679810 | Msa0684330:CDS | 20.0% |
| !!! | GTTTTGAATATAAATATCCA+AGG | + | chr4_4:47680030-47680049 | Msa0684330:CDS | 20.0% |
| !! | TTTGAATATAAATATCCAAG+GGG | + | chr4_4:47680032-47680051 | Msa0684330:CDS | 20.0% |
| !! | AGTTTTCTATGCTATTGTTA+TGG | + | chr4_4:47679462-47679481 | Msa0684330:CDS | 25.0% |
| ! | GTTATGGTTGTTGAATTTAT+TGG | + | chr4_4:47679478-47679497 | Msa0684330:CDS | 25.0% |
| ! | TATGGTTGTTGAATTTATTG+GGG | + | chr4_4:47679480-47679499 | Msa0684330:CDS | 25.0% |
| !! | TTTTTGATATATGAAGCAGT+AGG | + | chr4_4:47679697-47679716 | Msa0684330:CDS | 25.0% |
| ! | TATAAAAACGATAGAGTGAA+TGG | + | chr4_4:47679730-47679749 | Msa0684330:CDS | 25.0% |
| ! | GTTTGTTCTTAATTGTATCA+TGG | + | chr4_4:47679783-47679802 | Msa0684330:CDS | 25.0% |
| !! | ACTGATATGATTCAATCTTT+TGG | + | chr4_4:47680072-47680091 | Msa0684330:CDS | 25.0% |
| !!! | GAATATTTTTGGCATTCTAA+TGG | + | chr4_4:47680209-47680228 | Msa0684330:CDS | 25.0% |
| ! | AATCACAGAAAGTAAATCAA+TGG | - | chr4_4:47680388-47680407 | None:intergenic | 25.0% |
| !! | AGTTTTCTATGCTATTGTTA+TGG | + | chr4_4:47679462-47679481 | Msa0684330:CDS | 25.0% |
| ! | GTTATGGTTGTTGAATTTAT+TGG | + | chr4_4:47679478-47679497 | Msa0684330:CDS | 25.0% |
| ! | TATGGTTGTTGAATTTATTG+GGG | + | chr4_4:47679480-47679499 | Msa0684330:CDS | 25.0% |
| !! | TTTTTGATATATGAAGCAGT+AGG | + | chr4_4:47679697-47679716 | Msa0684330:CDS | 25.0% |
| ! | TATAAAAACGATAGAGTGAA+TGG | + | chr4_4:47679730-47679749 | Msa0684330:CDS | 25.0% |
| ! | GTTTGTTCTTAATTGTATCA+TGG | + | chr4_4:47679783-47679802 | Msa0684330:CDS | 25.0% |
| !! | ACTGATATGATTCAATCTTT+TGG | + | chr4_4:47680072-47680091 | Msa0684330:CDS | 25.0% |
| !!! | GAATATTTTTGGCATTCTAA+TGG | + | chr4_4:47680209-47680228 | Msa0684330:CDS | 25.0% |
| ! | AATCACAGAAAGTAAATCAA+TGG | - | chr4_4:47680388-47680407 | None:intergenic | 25.0% |
| ATGGTTGTTGAATTTATTGG+GGG | + | chr4_4:47679481-47679500 | Msa0684330:CDS | 30.0% | |
| !!! | TATAATCGACTTGAGGTTTT+AGG | + | chr4_4:47679634-47679653 | Msa0684330:CDS | 30.0% |
| ! | CAGTTAATTTGGTTCATATC+TGG | + | chr4_4:47679673-47679692 | Msa0684330:CDS | 30.0% |
| ATTAAGAACAAACCCAAATG+TGG | - | chr4_4:47679776-47679795 | None:intergenic | 30.0% | |
| ACTACCTAAAATAACTGATG+AGG | + | chr4_4:47679966-47679985 | Msa0684330:CDS | 30.0% | |
| !! | TTCTCCTCATCAGTTATTTT+AGG | - | chr4_4:47679973-47679992 | None:intergenic | 30.0% |
| AGATCAACAATAAACCATTC+TGG | - | chr4_4:47680132-47680151 | None:intergenic | 30.0% | |
| CCAAAAATATTCCTAAGCAT+TGG | - | chr4_4:47680201-47680220 | None:intergenic | 30.0% | |
| ! | CCAATGCTTAGGAATATTTT+TGG | + | chr4_4:47680198-47680217 | Msa0684330:CDS | 30.0% |
| TGAATGACATTAATCTCACT+TGG | - | chr4_4:47680243-47680262 | None:intergenic | 30.0% | |
| ! | AAATGGTCTTAGATGTATCA+AGG | + | chr4_4:47680269-47680288 | Msa0684330:CDS | 30.0% |
| ! | AATGGTCTTAGATGTATCAA+GGG | + | chr4_4:47680270-47680289 | Msa0684330:CDS | 30.0% |
| AAATCAATGGAATTTATGCC+AGG | - | chr4_4:47680375-47680394 | None:intergenic | 30.0% | |
| ATGGTTGTTGAATTTATTGG+GGG | + | chr4_4:47679481-47679500 | Msa0684330:CDS | 30.0% | |
| !!! | TATAATCGACTTGAGGTTTT+AGG | + | chr4_4:47679634-47679653 | Msa0684330:CDS | 30.0% |
| ! | CAGTTAATTTGGTTCATATC+TGG | + | chr4_4:47679673-47679692 | Msa0684330:CDS | 30.0% |
| ATTAAGAACAAACCCAAATG+TGG | - | chr4_4:47679776-47679795 | None:intergenic | 30.0% | |
| ACTACCTAAAATAACTGATG+AGG | + | chr4_4:47679966-47679985 | Msa0684330:CDS | 30.0% | |
| !! | TTCTCCTCATCAGTTATTTT+AGG | - | chr4_4:47679973-47679992 | None:intergenic | 30.0% |
| AGATCAACAATAAACCATTC+TGG | - | chr4_4:47680132-47680151 | None:intergenic | 30.0% | |
| CCAAAAATATTCCTAAGCAT+TGG | - | chr4_4:47680201-47680220 | None:intergenic | 30.0% | |
| ! | CCAATGCTTAGGAATATTTT+TGG | + | chr4_4:47680198-47680217 | Msa0684330:CDS | 30.0% |
| TGAATGACATTAATCTCACT+TGG | - | chr4_4:47680243-47680262 | None:intergenic | 30.0% | |
| ! | AAATGGTCTTAGATGTATCA+AGG | + | chr4_4:47680269-47680288 | Msa0684330:CDS | 30.0% |
| ! | AATGGTCTTAGATGTATCAA+GGG | + | chr4_4:47680270-47680289 | Msa0684330:CDS | 30.0% |
| AAATCAATGGAATTTATGCC+AGG | - | chr4_4:47680375-47680394 | None:intergenic | 30.0% | |
| GATAGTGACAATGTTGTCAT+AGG | - | chr4_4:47679352-47679371 | None:intergenic | 35.0% | |
| !!! | TGTTTGTCGTTTTTCCACAA+AGG | + | chr4_4:47679387-47679406 | Msa0684330:CDS | 35.0% |
| GCACATTTACTTTCTGACAT+TGG | + | chr4_4:47679541-47679560 | Msa0684330:CDS | 35.0% | |
| CATTTACTTTCTGACATTGG+TGG | + | chr4_4:47679544-47679563 | Msa0684330:CDS | 35.0% | |
| TTATACCCGAAAGATTGATG+AGG | - | chr4_4:47679619-47679638 | None:intergenic | 35.0% | |
| ATGTTTGCAATTGCCACATT+TGG | + | chr4_4:47679760-47679779 | Msa0684330:CDS | 35.0% | |
| TGTTTGCAATTGCCACATTT+GGG | + | chr4_4:47679761-47679780 | Msa0684330:CDS | 35.0% | |
| !!! | TGTATCATGGTTTTATGGCT+TGG | + | chr4_4:47679796-47679815 | Msa0684330:CDS | 35.0% |
| ! | CATGATCATCATCATGGTTT+TGG | + | chr4_4:47679820-47679839 | Msa0684330:CDS | 35.0% |
| AACCTTACCATGCTTTCAAA+TGG | + | chr4_4:47679991-47680010 | Msa0684330:CDS | 35.0% | |
| ! | TACCATTTGAAAGCATGGTA+AGG | - | chr4_4:47679996-47680015 | None:intergenic | 35.0% |
| CTTCTTACCATTTGAAAGCA+TGG | - | chr4_4:47680001-47680020 | None:intergenic | 35.0% | |
| ! | TAATATGGGCTAAACCAGAA+TGG | + | chr4_4:47680115-47680134 | Msa0684330:CDS | 35.0% |
| TGAGATTAATGTCATTCAGC+TGG | + | chr4_4:47680245-47680264 | Msa0684330:CDS | 35.0% | |
| AATGTCATTCAGCTGGAAAA+TGG | + | chr4_4:47680252-47680271 | Msa0684330:CDS | 35.0% | |
| GTTTCTATCTTGTCATGTAG+TGG | + | chr4_4:47680344-47680363 | Msa0684330:CDS | 35.0% | |
| GATAGTGACAATGTTGTCAT+AGG | - | chr4_4:47679352-47679371 | None:intergenic | 35.0% | |
| !!! | TGTTTGTCGTTTTTCCACAA+AGG | + | chr4_4:47679387-47679406 | Msa0684330:CDS | 35.0% |
| GCACATTTACTTTCTGACAT+TGG | + | chr4_4:47679541-47679560 | Msa0684330:CDS | 35.0% | |
| CATTTACTTTCTGACATTGG+TGG | + | chr4_4:47679544-47679563 | Msa0684330:CDS | 35.0% | |
| TTATACCCGAAAGATTGATG+AGG | - | chr4_4:47679619-47679638 | None:intergenic | 35.0% | |
| ATGTTTGCAATTGCCACATT+TGG | + | chr4_4:47679760-47679779 | Msa0684330:CDS | 35.0% | |
| TGTTTGCAATTGCCACATTT+GGG | + | chr4_4:47679761-47679780 | Msa0684330:CDS | 35.0% | |
| !!! | TGTATCATGGTTTTATGGCT+TGG | + | chr4_4:47679796-47679815 | Msa0684330:CDS | 35.0% |
| ! | CATGATCATCATCATGGTTT+TGG | + | chr4_4:47679820-47679839 | Msa0684330:CDS | 35.0% |
| AACCTTACCATGCTTTCAAA+TGG | + | chr4_4:47679991-47680010 | Msa0684330:CDS | 35.0% | |
| ! | TACCATTTGAAAGCATGGTA+AGG | - | chr4_4:47679996-47680015 | None:intergenic | 35.0% |
| CTTCTTACCATTTGAAAGCA+TGG | - | chr4_4:47680001-47680020 | None:intergenic | 35.0% | |
| ! | TAATATGGGCTAAACCAGAA+TGG | + | chr4_4:47680115-47680134 | Msa0684330:CDS | 35.0% |
| TGAGATTAATGTCATTCAGC+TGG | + | chr4_4:47680245-47680264 | Msa0684330:CDS | 35.0% | |
| AATGTCATTCAGCTGGAAAA+TGG | + | chr4_4:47680252-47680271 | Msa0684330:CDS | 35.0% | |
| GTTTCTATCTTGTCATGTAG+TGG | + | chr4_4:47680344-47680363 | Msa0684330:CDS | 35.0% | |
| GCCTATCTCAGATACAAGAT+CGG | + | chr4_4:47679309-47679328 | Msa0684330:CDS | 40.0% | |
| ! | ACCGATCTTGTATCTGAGAT+AGG | - | chr4_4:47679313-47679332 | None:intergenic | 40.0% |
| ! | ACAAACAGAATTTTTGCGCG+AGG | - | chr4_4:47679374-47679393 | None:intergenic | 40.0% |
| ! | TCCACAAAGGAAAAGAGTGT+TGG | + | chr4_4:47679400-47679419 | Msa0684330:CDS | 40.0% |
| !! | CCACAAAGGAAAAGAGTGTT+GGG | + | chr4_4:47679401-47679420 | Msa0684330:CDS | 40.0% |
| !! | CACAAAGGAAAAGAGTGTTG+GGG | + | chr4_4:47679402-47679421 | Msa0684330:CDS | 40.0% |
| !! | ACAAAGGAAAAGAGTGTTGG+GGG | + | chr4_4:47679403-47679422 | Msa0684330:CDS | 40.0% |
| TGTTGGGGGATCAAATGAAT+CGG | + | chr4_4:47679417-47679436 | Msa0684330:CDS | 40.0% | |
| AATCTCTCTGTTTGCAGTGT+GGG | + | chr4_4:47679573-47679592 | Msa0684330:CDS | 40.0% | |
| !! | TTTCGGGTATAATCGACTTG+AGG | + | chr4_4:47679627-47679646 | Msa0684330:CDS | 40.0% |
| CTTGGTCATGATCATCATCA+TGG | + | chr4_4:47679814-47679833 | Msa0684330:CDS | 40.0% | |
| CATAGTCATCATCAATGCCA+TGG | + | chr4_4:47679916-47679935 | Msa0684330:CDS | 40.0% | |
| TCATCATCAATGCCATGGAT+CGG | + | chr4_4:47679921-47679940 | Msa0684330:CDS | 40.0% | |
| ATGGATCGGATCATGATCAT+GGG | + | chr4_4:47679935-47679954 | Msa0684330:CDS | 40.0% | |
| !!! | TCTTTTGGAGTGATGATTGC+TGG | + | chr4_4:47680087-47680106 | Msa0684330:CDS | 40.0% |
| TGATTGCTGGAGGAGTAATA+TGG | + | chr4_4:47680100-47680119 | Msa0684330:CDS | 40.0% | |
| GATTGCTGGAGGAGTAATAT+GGG | + | chr4_4:47680101-47680120 | Msa0684330:CDS | 40.0% | |
| CATTGGCAGAGTAGTACTTA+AGG | - | chr4_4:47680184-47680203 | None:intergenic | 40.0% | |
| AGGTTCACGATTTGCATGTT+TGG | + | chr4_4:47680301-47680320 | Msa0684330:CDS | 40.0% | |
| GGTTCACGATTTGCATGTTT+GGG | + | chr4_4:47680302-47680321 | Msa0684330:CDS | 40.0% | |
| CATGTTTGGGCTATAACAGT+GGG | + | chr4_4:47680315-47680334 | Msa0684330:CDS | 40.0% | |
| GCCTATCTCAGATACAAGAT+CGG | + | chr4_4:47679309-47679328 | Msa0684330:CDS | 40.0% | |
| ! | ACCGATCTTGTATCTGAGAT+AGG | - | chr4_4:47679313-47679332 | None:intergenic | 40.0% |
| ! | ACAAACAGAATTTTTGCGCG+AGG | - | chr4_4:47679374-47679393 | None:intergenic | 40.0% |
| ! | TCCACAAAGGAAAAGAGTGT+TGG | + | chr4_4:47679400-47679419 | Msa0684330:CDS | 40.0% |
| !! | CCACAAAGGAAAAGAGTGTT+GGG | + | chr4_4:47679401-47679420 | Msa0684330:CDS | 40.0% |
| !! | CACAAAGGAAAAGAGTGTTG+GGG | + | chr4_4:47679402-47679421 | Msa0684330:CDS | 40.0% |
| !! | ACAAAGGAAAAGAGTGTTGG+GGG | + | chr4_4:47679403-47679422 | Msa0684330:CDS | 40.0% |
| TGTTGGGGGATCAAATGAAT+CGG | + | chr4_4:47679417-47679436 | Msa0684330:CDS | 40.0% | |
| AATCTCTCTGTTTGCAGTGT+GGG | + | chr4_4:47679573-47679592 | Msa0684330:CDS | 40.0% | |
| !! | TTTCGGGTATAATCGACTTG+AGG | + | chr4_4:47679627-47679646 | Msa0684330:CDS | 40.0% |
| CTTGGTCATGATCATCATCA+TGG | + | chr4_4:47679814-47679833 | Msa0684330:CDS | 40.0% | |
| CATAGTCATCATCAATGCCA+TGG | + | chr4_4:47679916-47679935 | Msa0684330:CDS | 40.0% | |
| TCATCATCAATGCCATGGAT+CGG | + | chr4_4:47679921-47679940 | Msa0684330:CDS | 40.0% | |
| ATGGATCGGATCATGATCAT+GGG | + | chr4_4:47679935-47679954 | Msa0684330:CDS | 40.0% | |
| !!! | TCTTTTGGAGTGATGATTGC+TGG | + | chr4_4:47680087-47680106 | Msa0684330:CDS | 40.0% |
| TGATTGCTGGAGGAGTAATA+TGG | + | chr4_4:47680100-47680119 | Msa0684330:CDS | 40.0% | |
| GATTGCTGGAGGAGTAATAT+GGG | + | chr4_4:47680101-47680120 | Msa0684330:CDS | 40.0% | |
| CATTGGCAGAGTAGTACTTA+AGG | - | chr4_4:47680184-47680203 | None:intergenic | 40.0% | |
| AGGTTCACGATTTGCATGTT+TGG | + | chr4_4:47680301-47680320 | Msa0684330:CDS | 40.0% | |
| GGTTCACGATTTGCATGTTT+GGG | + | chr4_4:47680302-47680321 | Msa0684330:CDS | 40.0% | |
| CATGTTTGGGCTATAACAGT+GGG | + | chr4_4:47680315-47680334 | Msa0684330:CDS | 40.0% | |
| CTCAGATACAAGATCGGTAG+AGG | + | chr4_4:47679315-47679334 | Msa0684330:CDS | 45.0% | |
| ACAAGATCGGTAGAGGAAAC+TGG | + | chr4_4:47679322-47679341 | Msa0684330:CDS | 45.0% | |
| ! | CCCAACACTCTTTTCCTTTG+TGG | - | chr4_4:47679404-47679423 | None:intergenic | 45.0% |
| CAATCTCTCTGTTTGCAGTG+TGG | + | chr4_4:47679572-47679591 | Msa0684330:CDS | 45.0% | |
| GCAACGCCTCATCAATCTTT+CGG | + | chr4_4:47679610-47679629 | Msa0684330:CDS | 45.0% | |
| CAACGCCTCATCAATCTTTC+GGG | + | chr4_4:47679611-47679630 | Msa0684330:CDS | 45.0% | |
| !!! | TCATCATGGTTTTGGAGCCT+CGG | + | chr4_4:47679828-47679847 | Msa0684330:CDS | 45.0% |
| ATGATCATGACCATGATCCG+AGG | - | chr4_4:47679848-47679867 | None:intergenic | 45.0% | |
| TCGGATCATGGTCATGATCA+TGG | + | chr4_4:47679847-47679866 | Msa0684330:CDS | 45.0% | |
| CGGATCATGGTCATGATCAT+GGG | + | chr4_4:47679848-47679867 | Msa0684330:CDS | 45.0% | |
| GGTCATCATCATCGTCATCA+TGG | + | chr4_4:47679886-47679905 | Msa0684330:CDS | 45.0% | |
| CATGATCATGATCCGATCCA+TGG | - | chr4_4:47679936-47679955 | None:intergenic | 45.0% | |
| CATGGATCGGATCATGATCA+TGG | + | chr4_4:47679934-47679953 | Msa0684330:CDS | 45.0% | |
| ATCGGATCATGATCATGGGA+TGG | + | chr4_4:47679939-47679958 | Msa0684330:CDS | 45.0% | |
| TCACATGCAAATAAGCCCCT+TGG | - | chr4_4:47680050-47680069 | None:intergenic | 45.0% | |
| ! | TTTGGAGTGATGATTGCTGG+AGG | + | chr4_4:47680090-47680109 | Msa0684330:CDS | 45.0% |
| GTACTACTCTGCCAATGCTT+AGG | + | chr4_4:47680187-47680206 | Msa0684330:CDS | 45.0% | |
| ! | TAGATGTATCAAGGGAGTGC+AGG | + | chr4_4:47680278-47680297 | Msa0684330:CDS | 45.0% |
| GCATGTTTGGGCTATAACAG+TGG | + | chr4_4:47680314-47680333 | Msa0684330:CDS | 45.0% | |
| CTCAGATACAAGATCGGTAG+AGG | + | chr4_4:47679315-47679334 | Msa0684330:CDS | 45.0% | |
| ACAAGATCGGTAGAGGAAAC+TGG | + | chr4_4:47679322-47679341 | Msa0684330:CDS | 45.0% | |
| ! | CCCAACACTCTTTTCCTTTG+TGG | - | chr4_4:47679404-47679423 | None:intergenic | 45.0% |
| CAATCTCTCTGTTTGCAGTG+TGG | + | chr4_4:47679572-47679591 | Msa0684330:CDS | 45.0% | |
| GCAACGCCTCATCAATCTTT+CGG | + | chr4_4:47679610-47679629 | Msa0684330:CDS | 45.0% | |
| CAACGCCTCATCAATCTTTC+GGG | + | chr4_4:47679611-47679630 | Msa0684330:CDS | 45.0% | |
| !!! | TCATCATGGTTTTGGAGCCT+CGG | + | chr4_4:47679828-47679847 | Msa0684330:CDS | 45.0% |
| ATGATCATGACCATGATCCG+AGG | - | chr4_4:47679848-47679867 | None:intergenic | 45.0% | |
| TCGGATCATGGTCATGATCA+TGG | + | chr4_4:47679847-47679866 | Msa0684330:CDS | 45.0% | |
| CGGATCATGGTCATGATCAT+GGG | + | chr4_4:47679848-47679867 | Msa0684330:CDS | 45.0% | |
| GGTCATCATCATCGTCATCA+TGG | + | chr4_4:47679886-47679905 | Msa0684330:CDS | 45.0% | |
| CATGATCATGATCCGATCCA+TGG | - | chr4_4:47679936-47679955 | None:intergenic | 45.0% | |
| CATGGATCGGATCATGATCA+TGG | + | chr4_4:47679934-47679953 | Msa0684330:CDS | 45.0% | |
| ATCGGATCATGATCATGGGA+TGG | + | chr4_4:47679939-47679958 | Msa0684330:CDS | 45.0% | |
| TCACATGCAAATAAGCCCCT+TGG | - | chr4_4:47680050-47680069 | None:intergenic | 45.0% | |
| ! | TTTGGAGTGATGATTGCTGG+AGG | + | chr4_4:47680090-47680109 | Msa0684330:CDS | 45.0% |
| GTACTACTCTGCCAATGCTT+AGG | + | chr4_4:47680187-47680206 | Msa0684330:CDS | 45.0% | |
| ! | TAGATGTATCAAGGGAGTGC+AGG | + | chr4_4:47680278-47680297 | Msa0684330:CDS | 45.0% |
| GCATGTTTGGGCTATAACAG+TGG | + | chr4_4:47680314-47680333 | Msa0684330:CDS | 45.0% | |
| TCTGTTTGCAGTGTGGGCTT+CGG | + | chr4_4:47679579-47679598 | Msa0684330:CDS | 50.0% | |
| CATGGGCACAGTCATGATCA+CGG | + | chr4_4:47679865-47679884 | Msa0684330:CDS | 50.0% | |
| GGATCATGATCATGGGATGG+AGG | + | chr4_4:47679942-47679961 | Msa0684330:CDS | 50.0% | |
| ! | ATGTATCAAGGGAGTGCAGG+AGG | + | chr4_4:47680281-47680300 | Msa0684330:CDS | 50.0% |
| TGTCATGTAGTGGCTGAACC+TGG | + | chr4_4:47680354-47680373 | Msa0684330:CDS | 50.0% | |
| TCTGTTTGCAGTGTGGGCTT+CGG | + | chr4_4:47679579-47679598 | Msa0684330:CDS | 50.0% | |
| CATGGGCACAGTCATGATCA+CGG | + | chr4_4:47679865-47679884 | Msa0684330:CDS | 50.0% | |
| GGATCATGATCATGGGATGG+AGG | + | chr4_4:47679942-47679961 | Msa0684330:CDS | 50.0% | |
| ! | ATGTATCAAGGGAGTGCAGG+AGG | + | chr4_4:47680281-47680300 | Msa0684330:CDS | 50.0% |
| TGTCATGTAGTGGCTGAACC+TGG | + | chr4_4:47680354-47680373 | Msa0684330:CDS | 50.0% | |
| CTGTTTGCAGTGTGGGCTTC+GGG | + | chr4_4:47679580-47679599 | Msa0684330:CDS | 55.0% | |
| !!! | GGTTTTGGAGCCTCGGATCA+TGG | + | chr4_4:47679835-47679854 | Msa0684330:CDS | 55.0% |
| CTGTTTGCAGTGTGGGCTTC+GGG | + | chr4_4:47679580-47679599 | Msa0684330:CDS | 55.0% | |
| !!! | GGTTTTGGAGCCTCGGATCA+TGG | + | chr4_4:47679835-47679854 | Msa0684330:CDS | 55.0% |
| TTGCAGTGTGGGCTTCGGGT+TGG | + | chr4_4:47679584-47679603 | Msa0684330:CDS | 60.0% | |
| ! | TGCAGTGTGGGCTTCGGGTT+GGG | + | chr4_4:47679585-47679604 | Msa0684330:CDS | 60.0% |
| TTGCAGTGTGGGCTTCGGGT+TGG | + | chr4_4:47679584-47679603 | Msa0684330:CDS | 60.0% | |
| ! | TGCAGTGTGGGCTTCGGGTT+GGG | + | chr4_4:47679585-47679604 | Msa0684330:CDS | 60.0% |
| !! | AGTGTGGGCTTCGGGTTGGG+AGG | + | chr4_4:47679588-47679607 | Msa0684330:CDS | 65.0% |
| !! | AGTGTGGGCTTCGGGTTGGG+AGG | + | chr4_4:47679588-47679607 | Msa0684330:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 47679292 | 47680464 | 47679292 | ID=Msa0684330;Name=Msa0684330 |
| chr4_4 | mRNA | 47679292 | 47680464 | 47679292 | ID=Msa0684330-mRNA-1;Parent=Msa0684330;Name=Msa0684330-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|-1|0|1|-1|1|1|0|390 |
| chr4_4 | exon | 47679292 | 47680464 | 47679292 | ID=Msa0684330-mRNA-1:exon:11767;Parent=Msa0684330-mRNA-1 |
| chr4_4 | CDS | 47679292 | 47680464 | 47679292 | ID=Msa0684330-mRNA-1:cds;Parent=Msa0684330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
