AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0096450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0096450 MtrunA17_Chr5g0418611 56.089 271 49 5 1 201 1 271 7.97e-37 129
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 77 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTCGTTCCGGTTGTGGTTA+TGG 0.251403 1_3:+2123211 Msa0096450:CDS
AACTACAACAACAATTATTA+TGG 0.294899 1_3:+2122728 Msa0096450:CDS
GGAGCTACTGGTGGTGGTTA+TGG 0.301488 1_3:+2123182 Msa0096450:CDS
ACCAGTTGCTCCTAAAATAT+TGG 0.302857 1_3:-2122898 None:intergenic
TATGGTAATGAGCAAAGTTT+TGG 0.303327 1_3:+2123452 Msa0096450:CDS
GTCGTTCCGGTTGTGGTTAT+GGG 0.320960 1_3:+2123212 Msa0096450:CDS
TGGATACGGCTATGTTAATT+AGG 0.326707 1_3:+2123514 Msa0096450:CDS
TATGGATATGGAGGGCGTTC+TGG 0.326809 1_3:+2123425 Msa0096450:CDS
CGTTCGAGTATTGGTGGATA+TGG 0.328623 1_3:+2123377 Msa0096450:CDS
GGTTATGGAGGTGGACGTTC+TGG 0.333707 1_3:+2123158 Msa0096450:CDS
GGTATGGGAGGTGGACGTTT+TGG 0.342216 1_3:+2123251 Msa0096450:CDS
GCTCAGTACTCGAATGGTTC+TGG 0.370267 1_3:-2122777 None:intergenic
TCTAGTGGTGGCTATGGATA+TGG 0.370645 1_3:+2123413 Msa0096450:CDS
GGAGGGCGTTCTGGTGGTTA+TGG 0.376684 1_3:+2123434 Msa0096450:CDS
AATAATAACGAGAGTGGGTA+TGG 0.380542 1_3:+2123235 Msa0096450:CDS
GACCGTTATGAGAGTGAGTA+TGG 0.381855 1_3:+2123323 Msa0096450:CDS
AAGTATCATGAGAGTGGTTA+TGG 0.384520 1_3:+2123077 Msa0096450:intron
TTCTAATGTCGTTCCGGTTG+TGG 0.400374 1_3:+2123205 Msa0096450:CDS
ACCCGATCTAGTGGTGGTTA+TGG 0.400741 1_3:+2123143 Msa0096450:CDS
GGACGTTCTGGTGGTGGATA+TGG 0.403001 1_3:+2123344 Msa0096450:CDS
TTATGGTTCTAATGTCGTTC+CGG 0.413727 1_3:+2123199 Msa0096450:CDS
GAGAGTGAGTATGGACGTTC+TGG 0.417170 1_3:+2123332 Msa0096450:CDS
ATTATTCCCATAACCACAAC+CGG 0.417758 1_3:-2123218 None:intergenic
CGTTATGGTGGTGGTACTAC+TGG 0.426556 1_3:+2123101 Msa0096450:CDS
AACAATTATTATGGTGGTCA+TGG 0.448786 1_3:+2122737 Msa0096450:CDS
GGACGTTCTGGTGGAGCTAC+TGG 0.454859 1_3:+2123170 Msa0096450:CDS
GAGAGTGGTTATGGACGTTA+TGG 0.478849 1_3:+2123086 Msa0096450:CDS
CTCCATAACCACCACTAGAT+CGG 0.489318 1_3:-2123145 None:intergenic
AACCGTTCTAGTGGTGGCTA+TGG 0.494450 1_3:+2123407 Msa0096450:CDS
GGAAGCGGCAACCGCAACCT+TGG 0.496409 1_3:-2122877 None:intergenic
AGTCGCTTCAGTGGTGGATA+CGG 0.501880 1_3:+2123500 Msa0096450:CDS
TCCATAACCACCACTAGATC+GGG 0.507582 1_3:-2123144 None:intergenic
ACGAGAGTGGGTATGGGAGG+TGG 0.511472 1_3:+2123242 Msa0096450:CDS
TCTAGTGGTGGTTATGGAGG+TGG 0.511654 1_3:+2123149 Msa0096450:CDS
TAAGTCAACTGACTCTTCCT+CGG 0.523075 1_3:+2122976 Msa0096450:CDS
TGAACAACAGGCCAAGGTTG+CGG 0.530992 1_3:+2122866 Msa0096450:intron
GAGTATGGACGTTCTGGTGG+TGG 0.533047 1_3:+2123338 Msa0096450:CDS
TGCTCCTAAAATATTGGAAG+CGG 0.533305 1_3:-2122892 None:intergenic
AAGTCAACTGACTCTTCCTC+GGG 0.537728 1_3:+2122977 Msa0096450:CDS
TGGTGTTGTTGATGAGAGAA+AGG 0.540028 1_3:+2122917 Msa0096450:CDS
GGTGGTGGTACTACTGGTGG+TGG 0.550059 1_3:+2123107 Msa0096450:CDS
TATGGGAATAATAACGAGAG+TGG 0.553125 1_3:+2123229 Msa0096450:CDS
ATAATAACGAGAGTGGGTAT+GGG 0.556913 1_3:+2123236 Msa0096450:CDS
CGTGATAGTCGCTTCAGTGG+TGG 0.564497 1_3:+2123494 Msa0096450:CDS
TCTGGTGGTGGATATGGTGA+TGG 0.566486 1_3:+2123350 Msa0096450:CDS
GATGGAGGACGTTCGAGTAT+TGG 0.567469 1_3:+2123368 Msa0096450:CDS
TTTGGAGGGTATGGTAGGGA+TGG 0.569920 1_3:+2123470 Msa0096450:CDS
ATTATTATGGTGGTCATGGA+AGG 0.571212 1_3:+2122741 Msa0096450:CDS
AGTGGTGGCTATGGATATGG+AGG 0.573815 1_3:+2123416 Msa0096450:CDS
GTCCATACTCACTCTCATAA+CGG 0.574932 1_3:-2123325 None:intergenic
AGTGGTTATGGACGTTATGG+TGG 0.581318 1_3:+2123089 Msa0096450:CDS
CGATCTAGTGGTGGTTATGG+AGG 0.581450 1_3:+2123146 Msa0096450:CDS
GGATATGGAGGGCGTTCTGG+TGG 0.586766 1_3:+2123428 Msa0096450:CDS
TCTGGTGGAGCTACTGGTGG+TGG 0.587836 1_3:+2123176 Msa0096450:CDS
GGAGAAGAAAACCGTTCTAG+TGG 0.590432 1_3:+2123398 Msa0096450:CDS
TACAACAACAATTATTATGG+TGG 0.593354 1_3:+2122731 Msa0096450:CDS
GGATAAAAGTATCATGAGAG+TGG 0.595455 1_3:+2123071 Msa0096450:intron
ATGGGAATAATAACGAGAGT+GGG 0.598404 1_3:+2123230 Msa0096450:CDS
TATGGAGGTGGACGTTCTGG+TGG 0.601172 1_3:+2123161 Msa0096450:CDS
GGAGGACGTTCGAGTATTGG+TGG 0.602193 1_3:+2123371 Msa0096450:CDS
AGTCTTGATACCCGATCTAG+TGG 0.603885 1_3:+2123134 Msa0096450:CDS
GAAGAAAACCGTTCTAGTGG+TGG 0.605340 1_3:+2123401 Msa0096450:CDS
GGTCGTGATAGTCGCTTCAG+TGG 0.617359 1_3:+2123491 Msa0096450:CDS
ATCCATAGCCACCACTAGAA+CGG 0.618974 1_3:-2123409 None:intergenic
GGTTATGGACGTTATGGTGG+TGG 0.619484 1_3:+2123092 Msa0096450:CDS
ATGTATGTTGATAAAGCCGC+TGG 0.625883 1_3:+2122948 Msa0096450:CDS
GGTGGTGGATATGGTGATGG+AGG 0.629886 1_3:+2123353 Msa0096450:CDS
CGTTCTGGTGGAGCTACTGG+TGG 0.642243 1_3:+2123173 Msa0096450:CDS
AGTGAGTATGGACGTTCTGG+TGG 0.651160 1_3:+2123335 Msa0096450:CDS
GGTGTTGTTGATGAGAGAAA+GGG 0.652776 1_3:+2122918 Msa0096450:CDS
ATAACGAGAGTGGGTATGGG+AGG 0.654802 1_3:+2123239 Msa0096450:CDS
GTTGATGAGAGAAAGGGCGT+TGG 0.655100 1_3:+2122924 Msa0096450:CDS
CAGTTGACTTAGATAACCAG+CGG 0.660210 1_3:-2122964 None:intergenic
TATGGTGGTGGTACTACTGG+TGG 0.661548 1_3:+2123104 Msa0096450:CDS
CTTGATACCCGATCTAGTGG+TGG 0.675744 1_3:+2123137 Msa0096450:CDS
TCATGGAAGGAACAACGTCA+CGG 0.679842 1_3:+2122754 Msa0096450:CDS
GTGGTGGCTATGGATATGGA+GGG 0.695224 1_3:+2123417 Msa0096450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTACAACAACAATTATTA+TGG + chr1_3:2122728-2122747 Msa0096450:CDS 20.0%
!! AACTACAACAACAATTATTA+TGG + chr1_3:2122728-2122747 Msa0096450:CDS 20.0%
! TACAACAACAATTATTATGG+TGG + chr1_3:2122731-2122750 Msa0096450:CDS 25.0%
! TACAACAACAATTATTATGG+TGG + chr1_3:2122731-2122750 Msa0096450:CDS 25.0%
AACAATTATTATGGTGGTCA+TGG + chr1_3:2122737-2122756 Msa0096450:CDS 30.0%
!!! CAGAATAACCATTTTTTCGT+CGG - chr1_3:2123011-2123030 None:intergenic 30.0%
TGGTGGTTATTATGGAAATA+AGG + chr1_3:2123050-2123069 Msa0096450:intron 30.0%
!! TATGGTAATGAGCAAAGTTT+TGG + chr1_3:2123452-2123471 Msa0096450:CDS 30.0%
AACAATTATTATGGTGGTCA+TGG + chr1_3:2122737-2122756 Msa0096450:CDS 30.0%
!!! CAGAATAACCATTTTTTCGT+CGG - chr1_3:2123011-2123030 None:intergenic 30.0%
TGGTGGTTATTATGGAAATA+AGG + chr1_3:2123050-2123069 Msa0096450:intron 30.0%
!! TATGGTAATGAGCAAAGTTT+TGG + chr1_3:2123452-2123471 Msa0096450:CDS 30.0%
ATTATTATGGTGGTCATGGA+AGG + chr1_3:2122741-2122760 Msa0096450:CDS 35.0%
AAAAAAGCTCAGTACTCGAA+TGG - chr1_3:2122786-2122805 None:intergenic 35.0%
TGCTCCTAAAATATTGGAAG+CGG - chr1_3:2122895-2122914 None:intergenic 35.0%
!! TCCAATATTTTAGGAGCAAC+TGG + chr1_3:2122897-2122916 Msa0096450:CDS 35.0%
ACCAGTTGCTCCTAAAATAT+TGG - chr1_3:2122901-2122920 None:intergenic 35.0%
!!! ATAACCATTTTTTCGTCGGT+AGG - chr1_3:2123007-2123026 None:intergenic 35.0%
CGACGAAAAAATGGTTATTC+TGG + chr1_3:2123009-2123028 Msa0096450:intron 35.0%
CGAAAAAATGGTTATTCTGG+TGG + chr1_3:2123012-2123031 Msa0096450:intron 35.0%
AAAAATGGTTATTCTGGTGG+TGG + chr1_3:2123015-2123034 Msa0096450:intron 35.0%
AAAATGGTTATTCTGGTGGT+GGG + chr1_3:2123016-2123035 Msa0096450:intron 35.0%
!! GGATAAAAGTATCATGAGAG+TGG + chr1_3:2123071-2123090 Msa0096450:intron 35.0%
AAGTATCATGAGAGTGGTTA+TGG + chr1_3:2123077-2123096 Msa0096450:intron 35.0%
!! TTATGGTTCTAATGTCGTTC+CGG + chr1_3:2123199-2123218 Msa0096450:CDS 35.0%
ATTATTCCCATAACCACAAC+CGG - chr1_3:2123221-2123240 None:intergenic 35.0%
TATGGGAATAATAACGAGAG+TGG + chr1_3:2123229-2123248 Msa0096450:CDS 35.0%
ATGGGAATAATAACGAGAGT+GGG + chr1_3:2123230-2123249 Msa0096450:CDS 35.0%
AATAATAACGAGAGTGGGTA+TGG + chr1_3:2123235-2123254 Msa0096450:CDS 35.0%
ATAATAACGAGAGTGGGTAT+GGG + chr1_3:2123236-2123255 Msa0096450:CDS 35.0%
!!! GTAATGAGCAAAGTTTTGGA+GGG + chr1_3:2123456-2123475 Msa0096450:CDS 35.0%
ATTATTATGGTGGTCATGGA+AGG + chr1_3:2122741-2122760 Msa0096450:CDS 35.0%
AAAAAAGCTCAGTACTCGAA+TGG - chr1_3:2122786-2122805 None:intergenic 35.0%
TGCTCCTAAAATATTGGAAG+CGG - chr1_3:2122895-2122914 None:intergenic 35.0%
!! TCCAATATTTTAGGAGCAAC+TGG + chr1_3:2122897-2122916 Msa0096450:CDS 35.0%
ACCAGTTGCTCCTAAAATAT+TGG - chr1_3:2122901-2122920 None:intergenic 35.0%
!!! ATAACCATTTTTTCGTCGGT+AGG - chr1_3:2123007-2123026 None:intergenic 35.0%
CGACGAAAAAATGGTTATTC+TGG + chr1_3:2123009-2123028 Msa0096450:intron 35.0%
CGAAAAAATGGTTATTCTGG+TGG + chr1_3:2123012-2123031 Msa0096450:intron 35.0%
AAAAATGGTTATTCTGGTGG+TGG + chr1_3:2123015-2123034 Msa0096450:intron 35.0%
AAAATGGTTATTCTGGTGGT+GGG + chr1_3:2123016-2123035 Msa0096450:intron 35.0%
!! GGATAAAAGTATCATGAGAG+TGG + chr1_3:2123071-2123090 Msa0096450:intron 35.0%
AAGTATCATGAGAGTGGTTA+TGG + chr1_3:2123077-2123096 Msa0096450:intron 35.0%
!! TTATGGTTCTAATGTCGTTC+CGG + chr1_3:2123199-2123218 Msa0096450:CDS 35.0%
ATTATTCCCATAACCACAAC+CGG - chr1_3:2123221-2123240 None:intergenic 35.0%
TATGGGAATAATAACGAGAG+TGG + chr1_3:2123229-2123248 Msa0096450:CDS 35.0%
ATGGGAATAATAACGAGAGT+GGG + chr1_3:2123230-2123249 Msa0096450:CDS 35.0%
AATAATAACGAGAGTGGGTA+TGG + chr1_3:2123235-2123254 Msa0096450:CDS 35.0%
ATAATAACGAGAGTGGGTAT+GGG + chr1_3:2123236-2123255 Msa0096450:CDS 35.0%
!!! GTAATGAGCAAAGTTTTGGA+GGG + chr1_3:2123456-2123475 Msa0096450:CDS 35.0%
!!! TGAGCTTTTTTCCTCTGCTA+AGG + chr1_3:2122795-2122814 Msa0096450:intron 40.0%
!! GTTGCCGCTTCCAATATTTT+AGG + chr1_3:2122888-2122907 Msa0096450:CDS 40.0%
!! TGGTGTTGTTGATGAGAGAA+AGG + chr1_3:2122917-2122936 Msa0096450:CDS 40.0%
!! GGTGTTGTTGATGAGAGAAA+GGG + chr1_3:2122918-2122937 Msa0096450:CDS 40.0%
! ATGTATGTTGATAAAGCCGC+TGG + chr1_3:2122948-2122967 Msa0096450:CDS 40.0%
! CAGTTGACTTAGATAACCAG+CGG - chr1_3:2122967-2122986 None:intergenic 40.0%
! TAAGTCAACTGACTCTTCCT+CGG + chr1_3:2122976-2122995 Msa0096450:CDS 40.0%
TGTTCCTACCGACGAAAAAA+TGG + chr1_3:2123000-2123019 Msa0096450:intron 40.0%
GTCCATACTCACTCTCATAA+CGG - chr1_3:2123328-2123347 None:intergenic 40.0%
!! GGTAATGAGCAAAGTTTTGG+AGG + chr1_3:2123455-2123474 Msa0096450:CDS 40.0%
!!! AAAGTTTTGGAGGGTATGGT+AGG + chr1_3:2123465-2123484 Msa0096450:CDS 40.0%
!!! AAGTTTTGGAGGGTATGGTA+GGG + chr1_3:2123466-2123485 Msa0096450:CDS 40.0%
!!! TGAGCTTTTTTCCTCTGCTA+AGG + chr1_3:2122795-2122814 Msa0096450:intron 40.0%
!! GTTGCCGCTTCCAATATTTT+AGG + chr1_3:2122888-2122907 Msa0096450:CDS 40.0%
!! TGGTGTTGTTGATGAGAGAA+AGG + chr1_3:2122917-2122936 Msa0096450:CDS 40.0%
!! GGTGTTGTTGATGAGAGAAA+GGG + chr1_3:2122918-2122937 Msa0096450:CDS 40.0%
! ATGTATGTTGATAAAGCCGC+TGG + chr1_3:2122948-2122967 Msa0096450:CDS 40.0%
! CAGTTGACTTAGATAACCAG+CGG - chr1_3:2122967-2122986 None:intergenic 40.0%
! TAAGTCAACTGACTCTTCCT+CGG + chr1_3:2122976-2122995 Msa0096450:CDS 40.0%
TGTTCCTACCGACGAAAAAA+TGG + chr1_3:2123000-2123019 Msa0096450:intron 40.0%
GTCCATACTCACTCTCATAA+CGG - chr1_3:2123328-2123347 None:intergenic 40.0%
!! GGTAATGAGCAAAGTTTTGG+AGG + chr1_3:2123455-2123474 Msa0096450:CDS 40.0%
!!! AAAGTTTTGGAGGGTATGGT+AGG + chr1_3:2123465-2123484 Msa0096450:CDS 40.0%
!!! AAGTTTTGGAGGGTATGGTA+GGG + chr1_3:2123466-2123485 Msa0096450:CDS 40.0%
TCATGGAAGGAACAACGTCA+CGG + chr1_3:2122754-2122773 Msa0096450:CDS 45.0%
! TTCCTCTGCTAAGGTCTTGT+CGG + chr1_3:2122804-2122823 Msa0096450:intron 45.0%
TCCGTTTACAACCATGAACC+TGG + chr1_3:2122838-2122857 Msa0096450:intron 45.0%
GCCAGGTTCATGGTTGTAAA+CGG - chr1_3:2122842-2122861 None:intergenic 45.0%
TTACAACCATGAACCTGGCA+AGG + chr1_3:2122843-2122862 Msa0096450:intron 45.0%
! AAGTCAACTGACTCTTCCTC+GGG + chr1_3:2122977-2122996 Msa0096450:CDS 45.0%
!! GTTATTCTGGTGGTGGGTTT+GGG + chr1_3:2123022-2123041 Msa0096450:intron 45.0%
!! TTATTCTGGTGGTGGGTTTG+GGG + chr1_3:2123023-2123042 Msa0096450:intron 45.0%
GGGGGAAATGGTGGTTATTA+TGG + chr1_3:2123042-2123061 Msa0096450:intron 45.0%
GAGAGTGGTTATGGACGTTA+TGG + chr1_3:2123086-2123105 Msa0096450:CDS 45.0%
AGTGGTTATGGACGTTATGG+TGG + chr1_3:2123089-2123108 Msa0096450:CDS 45.0%
AGTCTTGATACCCGATCTAG+TGG + chr1_3:2123134-2123153 Msa0096450:CDS 45.0%
TCCATAACCACCACTAGATC+GGG - chr1_3:2123147-2123166 None:intergenic 45.0%
CTCCATAACCACCACTAGAT+CGG - chr1_3:2123148-2123167 None:intergenic 45.0%
TTCTAATGTCGTTCCGGTTG+TGG + chr1_3:2123205-2123224 Msa0096450:CDS 45.0%
TATGGTTCCGATGATCGTTC+TGG + chr1_3:2123282-2123301 Msa0096450:intron 45.0%
GACCGTTATGAGAGTGAGTA+TGG + chr1_3:2123323-2123342 Msa0096450:CDS 45.0%
!! CGTTCGAGTATTGGTGGATA+TGG + chr1_3:2123377-2123396 Msa0096450:CDS 45.0%
GGAGAAGAAAACCGTTCTAG+TGG + chr1_3:2123398-2123417 Msa0096450:CDS 45.0%
GAAGAAAACCGTTCTAGTGG+TGG + chr1_3:2123401-2123420 Msa0096450:CDS 45.0%
ATCCATAGCCACCACTAGAA+CGG - chr1_3:2123412-2123431 None:intergenic 45.0%
TCTAGTGGTGGCTATGGATA+TGG + chr1_3:2123413-2123432 Msa0096450:CDS 45.0%
!!! GAGCAAAGTTTTGGAGGGTA+TGG + chr1_3:2123461-2123480 Msa0096450:CDS 45.0%
TCATGGAAGGAACAACGTCA+CGG + chr1_3:2122754-2122773 Msa0096450:CDS 45.0%
! TTCCTCTGCTAAGGTCTTGT+CGG + chr1_3:2122804-2122823 Msa0096450:intron 45.0%
TCCGTTTACAACCATGAACC+TGG + chr1_3:2122838-2122857 Msa0096450:intron 45.0%
GCCAGGTTCATGGTTGTAAA+CGG - chr1_3:2122842-2122861 None:intergenic 45.0%
TTACAACCATGAACCTGGCA+AGG + chr1_3:2122843-2122862 Msa0096450:intron 45.0%
! AAGTCAACTGACTCTTCCTC+GGG + chr1_3:2122977-2122996 Msa0096450:CDS 45.0%
!! GTTATTCTGGTGGTGGGTTT+GGG + chr1_3:2123022-2123041 Msa0096450:intron 45.0%
!! TTATTCTGGTGGTGGGTTTG+GGG + chr1_3:2123023-2123042 Msa0096450:intron 45.0%
GGGGGAAATGGTGGTTATTA+TGG + chr1_3:2123042-2123061 Msa0096450:intron 45.0%
GAGAGTGGTTATGGACGTTA+TGG + chr1_3:2123086-2123105 Msa0096450:CDS 45.0%
AGTGGTTATGGACGTTATGG+TGG + chr1_3:2123089-2123108 Msa0096450:CDS 45.0%
AGTCTTGATACCCGATCTAG+TGG + chr1_3:2123134-2123153 Msa0096450:CDS 45.0%
TCCATAACCACCACTAGATC+GGG - chr1_3:2123147-2123166 None:intergenic 45.0%
CTCCATAACCACCACTAGAT+CGG - chr1_3:2123148-2123167 None:intergenic 45.0%
TTCTAATGTCGTTCCGGTTG+TGG + chr1_3:2123205-2123224 Msa0096450:CDS 45.0%
TATGGTTCCGATGATCGTTC+TGG + chr1_3:2123282-2123301 Msa0096450:intron 45.0%
GACCGTTATGAGAGTGAGTA+TGG + chr1_3:2123323-2123342 Msa0096450:CDS 45.0%
!! CGTTCGAGTATTGGTGGATA+TGG + chr1_3:2123377-2123396 Msa0096450:CDS 45.0%
GGAGAAGAAAACCGTTCTAG+TGG + chr1_3:2123398-2123417 Msa0096450:CDS 45.0%
GAAGAAAACCGTTCTAGTGG+TGG + chr1_3:2123401-2123420 Msa0096450:CDS 45.0%
ATCCATAGCCACCACTAGAA+CGG - chr1_3:2123412-2123431 None:intergenic 45.0%
TCTAGTGGTGGCTATGGATA+TGG + chr1_3:2123413-2123432 Msa0096450:CDS 45.0%
!!! GAGCAAAGTTTTGGAGGGTA+TGG + chr1_3:2123461-2123480 Msa0096450:CDS 45.0%
GCTCAGTACTCGAATGGTTC+TGG - chr1_3:2122780-2122799 None:intergenic 50.0%
TGTTCACCTTGCCAGGTTCA+TGG - chr1_3:2122852-2122871 None:intergenic 50.0%
AACCTGGCAAGGTGAACAAC+AGG + chr1_3:2122854-2122873 Msa0096450:intron 50.0%
TGAACAACAGGCCAAGGTTG+CGG + chr1_3:2122866-2122885 Msa0096450:intron 50.0%
! GTTGATGAGAGAAAGGGCGT+TGG + chr1_3:2122924-2122943 Msa0096450:CDS 50.0%
!! GGTTATTCTGGTGGTGGGTT+TGG + chr1_3:2123021-2123040 Msa0096450:intron 50.0%
!! TATTCTGGTGGTGGGTTTGG+GGG + chr1_3:2123024-2123043 Msa0096450:intron 50.0%
GGTTATGGACGTTATGGTGG+TGG + chr1_3:2123092-2123111 Msa0096450:CDS 50.0%
!! CGTTATGGTGGTGGTACTAC+TGG + chr1_3:2123101-2123120 Msa0096450:CDS 50.0%
!! TATGGTGGTGGTACTACTGG+TGG + chr1_3:2123104-2123123 Msa0096450:CDS 50.0%
CTTGATACCCGATCTAGTGG+TGG + chr1_3:2123137-2123156 Msa0096450:CDS 50.0%
ACCCGATCTAGTGGTGGTTA+TGG + chr1_3:2123143-2123162 Msa0096450:CDS 50.0%
CGATCTAGTGGTGGTTATGG+AGG + chr1_3:2123146-2123165 Msa0096450:CDS 50.0%
TCTAGTGGTGGTTATGGAGG+TGG + chr1_3:2123149-2123168 Msa0096450:CDS 50.0%
TGTCGTTCCGGTTGTGGTTA+TGG + chr1_3:2123211-2123230 Msa0096450:CDS 50.0%
GTCGTTCCGGTTGTGGTTAT+GGG + chr1_3:2123212-2123231 Msa0096450:CDS 50.0%
ATAACGAGAGTGGGTATGGG+AGG + chr1_3:2123239-2123258 Msa0096450:CDS 50.0%
!! GACGTTTTGGTGGGTGGTTA+TGG + chr1_3:2123264-2123283 Msa0096450:intron 50.0%
ACCACCACCAGAACGATCAT+CGG - chr1_3:2123292-2123311 None:intergenic 50.0%
CTCACTCTCATAACGGTCAC+TGG - chr1_3:2123321-2123340 None:intergenic 50.0%
GAGAGTGAGTATGGACGTTC+TGG + chr1_3:2123332-2123351 Msa0096450:CDS 50.0%
AGTGAGTATGGACGTTCTGG+TGG + chr1_3:2123335-2123354 Msa0096450:CDS 50.0%
!! TCTGGTGGTGGATATGGTGA+TGG + chr1_3:2123350-2123369 Msa0096450:CDS 50.0%
GATGGAGGACGTTCGAGTAT+TGG + chr1_3:2123368-2123387 Msa0096450:CDS 50.0%
AACCGTTCTAGTGGTGGCTA+TGG + chr1_3:2123407-2123426 Msa0096450:CDS 50.0%
AGTGGTGGCTATGGATATGG+AGG + chr1_3:2123416-2123435 Msa0096450:CDS 50.0%
GTGGTGGCTATGGATATGGA+GGG + chr1_3:2123417-2123436 Msa0096450:CDS 50.0%
!! TATGGATATGGAGGGCGTTC+TGG + chr1_3:2123425-2123444 Msa0096450:CDS 50.0%
! TTTGGAGGGTATGGTAGGGA+TGG + chr1_3:2123470-2123489 Msa0096450:CDS 50.0%
!! AGTCGCTTCAGTGGTGGATA+CGG + chr1_3:2123500-2123519 Msa0096450:CDS 50.0%
GCTCAGTACTCGAATGGTTC+TGG - chr1_3:2122780-2122799 None:intergenic 50.0%
TGTTCACCTTGCCAGGTTCA+TGG - chr1_3:2122852-2122871 None:intergenic 50.0%
AACCTGGCAAGGTGAACAAC+AGG + chr1_3:2122854-2122873 Msa0096450:intron 50.0%
TGAACAACAGGCCAAGGTTG+CGG + chr1_3:2122866-2122885 Msa0096450:intron 50.0%
! GTTGATGAGAGAAAGGGCGT+TGG + chr1_3:2122924-2122943 Msa0096450:CDS 50.0%
!! GGTTATTCTGGTGGTGGGTT+TGG + chr1_3:2123021-2123040 Msa0096450:intron 50.0%
!! TATTCTGGTGGTGGGTTTGG+GGG + chr1_3:2123024-2123043 Msa0096450:intron 50.0%
GGTTATGGACGTTATGGTGG+TGG + chr1_3:2123092-2123111 Msa0096450:CDS 50.0%
!! CGTTATGGTGGTGGTACTAC+TGG + chr1_3:2123101-2123120 Msa0096450:CDS 50.0%
!! TATGGTGGTGGTACTACTGG+TGG + chr1_3:2123104-2123123 Msa0096450:CDS 50.0%
CTTGATACCCGATCTAGTGG+TGG + chr1_3:2123137-2123156 Msa0096450:CDS 50.0%
ACCCGATCTAGTGGTGGTTA+TGG + chr1_3:2123143-2123162 Msa0096450:CDS 50.0%
CGATCTAGTGGTGGTTATGG+AGG + chr1_3:2123146-2123165 Msa0096450:CDS 50.0%
TCTAGTGGTGGTTATGGAGG+TGG + chr1_3:2123149-2123168 Msa0096450:CDS 50.0%
TGTCGTTCCGGTTGTGGTTA+TGG + chr1_3:2123211-2123230 Msa0096450:CDS 50.0%
GTCGTTCCGGTTGTGGTTAT+GGG + chr1_3:2123212-2123231 Msa0096450:CDS 50.0%
ATAACGAGAGTGGGTATGGG+AGG + chr1_3:2123239-2123258 Msa0096450:CDS 50.0%
!! GACGTTTTGGTGGGTGGTTA+TGG + chr1_3:2123264-2123283 Msa0096450:intron 50.0%
ACCACCACCAGAACGATCAT+CGG - chr1_3:2123292-2123311 None:intergenic 50.0%
CTCACTCTCATAACGGTCAC+TGG - chr1_3:2123321-2123340 None:intergenic 50.0%
GAGAGTGAGTATGGACGTTC+TGG + chr1_3:2123332-2123351 Msa0096450:CDS 50.0%
AGTGAGTATGGACGTTCTGG+TGG + chr1_3:2123335-2123354 Msa0096450:CDS 50.0%
!! TCTGGTGGTGGATATGGTGA+TGG + chr1_3:2123350-2123369 Msa0096450:CDS 50.0%
GATGGAGGACGTTCGAGTAT+TGG + chr1_3:2123368-2123387 Msa0096450:CDS 50.0%
AACCGTTCTAGTGGTGGCTA+TGG + chr1_3:2123407-2123426 Msa0096450:CDS 50.0%
AGTGGTGGCTATGGATATGG+AGG + chr1_3:2123416-2123435 Msa0096450:CDS 50.0%
GTGGTGGCTATGGATATGGA+GGG + chr1_3:2123417-2123436 Msa0096450:CDS 50.0%
!! TATGGATATGGAGGGCGTTC+TGG + chr1_3:2123425-2123444 Msa0096450:CDS 50.0%
! TTTGGAGGGTATGGTAGGGA+TGG + chr1_3:2123470-2123489 Msa0096450:CDS 50.0%
!! AGTCGCTTCAGTGGTGGATA+CGG + chr1_3:2123500-2123519 Msa0096450:CDS 50.0%
GTCCGACAAGACCTTAGCAG+AGG - chr1_3:2122809-2122828 None:intergenic 55.0%
! TGCTAAGGTCTTGTCGGACG+CGG + chr1_3:2122810-2122829 Msa0096450:intron 55.0%
GCAAGGTGAACAACAGGCCA+AGG + chr1_3:2122860-2122879 Msa0096450:intron 55.0%
GGTTATGGAGGTGGACGTTC+TGG + chr1_3:2123158-2123177 Msa0096450:CDS 55.0%
TATGGAGGTGGACGTTCTGG+TGG + chr1_3:2123161-2123180 Msa0096450:CDS 55.0%
!! GGAGCTACTGGTGGTGGTTA+TGG + chr1_3:2123182-2123201 Msa0096450:CDS 55.0%
! GGTATGGGAGGTGGACGTTT+TGG + chr1_3:2123251-2123270 Msa0096450:CDS 55.0%
! ATGGGAGGTGGACGTTTTGG+TGG + chr1_3:2123254-2123273 Msa0096450:CDS 55.0%
!! TGGGAGGTGGACGTTTTGGT+GGG + chr1_3:2123255-2123274 Msa0096450:CDS 55.0%
GGTTCCGATGATCGTTCTGG+TGG + chr1_3:2123285-2123304 Msa0096450:intron 55.0%
TCCGATGATCGTTCTGGTGG+TGG + chr1_3:2123288-2123307 Msa0096450:intron 55.0%
GAGTATGGACGTTCTGGTGG+TGG + chr1_3:2123338-2123357 Msa0096450:CDS 55.0%
!! GGACGTTCTGGTGGTGGATA+TGG + chr1_3:2123344-2123363 Msa0096450:CDS 55.0%
!! GGTGGTGGATATGGTGATGG+AGG + chr1_3:2123353-2123372 Msa0096450:CDS 55.0%
!! GGAGGACGTTCGAGTATTGG+TGG + chr1_3:2123371-2123390 Msa0096450:CDS 55.0%
GGTCGTGATAGTCGCTTCAG+TGG + chr1_3:2123491-2123510 Msa0096450:CDS 55.0%
CGTGATAGTCGCTTCAGTGG+TGG + chr1_3:2123494-2123513 Msa0096450:CDS 55.0%
GTCCGACAAGACCTTAGCAG+AGG - chr1_3:2122809-2122828 None:intergenic 55.0%
! TGCTAAGGTCTTGTCGGACG+CGG + chr1_3:2122810-2122829 Msa0096450:intron 55.0%
GCAAGGTGAACAACAGGCCA+AGG + chr1_3:2122860-2122879 Msa0096450:intron 55.0%
GGTTATGGAGGTGGACGTTC+TGG + chr1_3:2123158-2123177 Msa0096450:CDS 55.0%
TATGGAGGTGGACGTTCTGG+TGG + chr1_3:2123161-2123180 Msa0096450:CDS 55.0%
!! GGAGCTACTGGTGGTGGTTA+TGG + chr1_3:2123182-2123201 Msa0096450:CDS 55.0%
! GGTATGGGAGGTGGACGTTT+TGG + chr1_3:2123251-2123270 Msa0096450:CDS 55.0%
! ATGGGAGGTGGACGTTTTGG+TGG + chr1_3:2123254-2123273 Msa0096450:CDS 55.0%
!! TGGGAGGTGGACGTTTTGGT+GGG + chr1_3:2123255-2123274 Msa0096450:CDS 55.0%
GGTTCCGATGATCGTTCTGG+TGG + chr1_3:2123285-2123304 Msa0096450:intron 55.0%
TCCGATGATCGTTCTGGTGG+TGG + chr1_3:2123288-2123307 Msa0096450:intron 55.0%
GAGTATGGACGTTCTGGTGG+TGG + chr1_3:2123338-2123357 Msa0096450:CDS 55.0%
!! GGACGTTCTGGTGGTGGATA+TGG + chr1_3:2123344-2123363 Msa0096450:CDS 55.0%
!! GGTGGTGGATATGGTGATGG+AGG + chr1_3:2123353-2123372 Msa0096450:CDS 55.0%
!! GGAGGACGTTCGAGTATTGG+TGG + chr1_3:2123371-2123390 Msa0096450:CDS 55.0%
GGTCGTGATAGTCGCTTCAG+TGG + chr1_3:2123491-2123510 Msa0096450:CDS 55.0%
CGTGATAGTCGCTTCAGTGG+TGG + chr1_3:2123494-2123513 Msa0096450:CDS 55.0%
GGCCTGTTGTTCACCTTGCC+AGG - chr1_3:2122859-2122878 None:intergenic 60.0%
TTCGTCGGTAGGAACACCCG+AGG - chr1_3:2122996-2123015 None:intergenic 60.0%
!! GGTGGTGGGTTTGGGGGAAA+TGG + chr1_3:2123030-2123049 Msa0096450:intron 60.0%
! GGTGGGTTTGGGGGAAATGG+TGG + chr1_3:2123033-2123052 Msa0096450:intron 60.0%
! GGTGGTGGTACTACTGGTGG+TGG + chr1_3:2123107-2123126 Msa0096450:CDS 60.0%
GGACGTTCTGGTGGAGCTAC+TGG + chr1_3:2123170-2123189 Msa0096450:CDS 60.0%
CGTTCTGGTGGAGCTACTGG+TGG + chr1_3:2123173-2123192 Msa0096450:CDS 60.0%
TCTGGTGGAGCTACTGGTGG+TGG + chr1_3:2123176-2123195 Msa0096450:CDS 60.0%
ACGAGAGTGGGTATGGGAGG+TGG + chr1_3:2123242-2123261 Msa0096450:CDS 60.0%
!! GAGGTGGACGTTTTGGTGGG+TGG + chr1_3:2123258-2123277 Msa0096450:CDS 60.0%
!! GGATATGGAGGGCGTTCTGG+TGG + chr1_3:2123428-2123447 Msa0096450:CDS 60.0%
!! GGAGGGCGTTCTGGTGGTTA+TGG + chr1_3:2123434-2123453 Msa0096450:CDS 60.0%
GGCCTGTTGTTCACCTTGCC+AGG - chr1_3:2122859-2122878 None:intergenic 60.0%
TTCGTCGGTAGGAACACCCG+AGG - chr1_3:2122996-2123015 None:intergenic 60.0%
!! GGTGGTGGGTTTGGGGGAAA+TGG + chr1_3:2123030-2123049 Msa0096450:intron 60.0%
! GGTGGGTTTGGGGGAAATGG+TGG + chr1_3:2123033-2123052 Msa0096450:intron 60.0%
! GGTGGTGGTACTACTGGTGG+TGG + chr1_3:2123107-2123126 Msa0096450:CDS 60.0%
GGACGTTCTGGTGGAGCTAC+TGG + chr1_3:2123170-2123189 Msa0096450:CDS 60.0%
CGTTCTGGTGGAGCTACTGG+TGG + chr1_3:2123173-2123192 Msa0096450:CDS 60.0%
TCTGGTGGAGCTACTGGTGG+TGG + chr1_3:2123176-2123195 Msa0096450:CDS 60.0%
ACGAGAGTGGGTATGGGAGG+TGG + chr1_3:2123242-2123261 Msa0096450:CDS 60.0%
!! GAGGTGGACGTTTTGGTGGG+TGG + chr1_3:2123258-2123277 Msa0096450:CDS 60.0%
!! GGATATGGAGGGCGTTCTGG+TGG + chr1_3:2123428-2123447 Msa0096450:CDS 60.0%
!! GGAGGGCGTTCTGGTGGTTA+TGG + chr1_3:2123434-2123453 Msa0096450:CDS 60.0%
GGAAGCGGCAACCGCAACCT+TGG - chr1_3:2122880-2122899 None:intergenic 65.0%
GGAAGCGGCAACCGCAACCT+TGG - chr1_3:2122880-2122899 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 2122722 2123535 2122722 ID=Msa0096450;Name=Msa0096450
chr1_3 mRNA 2122722 2123535 2122722 ID=Msa0096450-mRNA-1;Parent=Msa0096450;Name=Msa0096450-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|4|0|201
chr1_3 exon 2122722 2122790 2122722 ID=Msa0096450-mRNA-1:exon:468;Parent=Msa0096450-mRNA-1
chr1_3 exon 2122876 2122998 2122876 ID=Msa0096450-mRNA-1:exon:469;Parent=Msa0096450-mRNA-1
chr1_3 exon 2123080 2123279 2123080 ID=Msa0096450-mRNA-1:exon:470;Parent=Msa0096450-mRNA-1
chr1_3 exon 2123322 2123535 2123322 ID=Msa0096450-mRNA-1:exon:471;Parent=Msa0096450-mRNA-1
chr1_3 CDS 2122722 2122790 2122722 ID=Msa0096450-mRNA-1:cds;Parent=Msa0096450-mRNA-1
chr1_3 CDS 2122876 2122998 2122876 ID=Msa0096450-mRNA-1:cds;Parent=Msa0096450-mRNA-1
chr1_3 CDS 2123080 2123279 2123080 ID=Msa0096450-mRNA-1:cds;Parent=Msa0096450-mRNA-1
chr1_3 CDS 2123322 2123535 2123322 ID=Msa0096450-mRNA-1:cds;Parent=Msa0096450-mRNA-1
Gene Sequence

>Msa0096450

ATGGACAACTACAACAACAATTATTATGGTGGTCATGGAAGGAACAACGTCACGGCCAGAACCATTCGAGCCAAGGTTGCGGTTGCCGCTTCCAATATTTTAGGAGCAACTGGTGTTGTTGATGAGAGAAAGGGCGTTGGCATGTATGTTGATAAAGCCGCTGGTTATCTAAGTCAACTGACTCTTCCTCGGTATCATGAGAGTGGTTATGGACGTTATGGTGGTGGTACTACTGGTGGTGGTTACAGTCTTGATACCCGATCTAGTGGTGGTTATGGAGGTGGACGTTCTGGTGGAGCTACTGGTGGTGGTTATGGTTCTAATGTCGTTCCGGTTGTGGTTATGGGAATAATAACGAGAGTGGGTATGGGAGGTGGACGTTTTGGTGGGTGTGACCGTTATGAGAGTGAGTATGGACGTTCTGGTGGTGGATATGGTGATGGAGGACGTTCGAGTATTGGTGGATATGGAGAAGAAAACCGTTCTAGTGGTGGCTATGGATATGGAGGGCGTTCTGGTGGTTATGGTAATGAGCAAAGTTTTGGAGGGTATGGTAGGGATGGTCGTGATAGTCGCTTCAGTGGTGGATACGGCTATGTTAATTAG

Protein sequence

>Msa0096450

MDNYNNNYYGGHGRNNVTARTIRAKVAVAASNILGATGVVDERKGVGMYVDKAAGYLSQLTLPRYHESGYGRYGGGTTGGGYSLDTRSSGGYGGGRSGGATGGGYGSNVVPVVVMGIITRVGMGGGRFGGCDRYESEYGRSGGGYGDGGRSSIGGYGEENRSSGGYGYGGRSGGYGNEQSFGGYGRDGRDSRFSGGYGYVN*