Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234020 | AAP33165.1 | 99.506 | 607 | 3 | 0 | 1 | 607 | 1 | 607 | 0.0 | 1252 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234020 | sp|Q06215|PPO_VICFA | 71.591 | 616 | 156 | 9 | 1 | 607 | 1 | 606 | 0.0 | 829 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234020 | Q7Y249 | 99.506 | 607 | 3 | 0 | 1 | 607 | 1 | 607 | 0.0 | 1252 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043980 | Msa0234020 | 0.811697 | 6.149527e-51 | -8.615850e-47 |
| Msa0090100 | Msa0234020 | 0.800386 | 1.476648e-48 | -8.615850e-47 |
| Msa0147920 | Msa0234020 | 0.825169 | 5.426756e-54 | -8.615850e-47 |
| Msa0191910 | Msa0234020 | 0.987611 | 6.892139e-171 | -8.615850e-47 |
| Msa0206010 | Msa0234020 | 0.805686 | 1.184092e-49 | -8.615850e-47 |
| Msa0216530 | Msa0234020 | 0.804797 | 1.818314e-49 | -8.615850e-47 |
| Msa0217680 | Msa0234020 | 0.823418 | 1.400070e-53 | -8.615850e-47 |
| Msa0234020 | Msa0287410 | 0.809562 | 1.779433e-50 | -8.615850e-47 |
| Msa0234020 | Msa0319170 | 0.813240 | 2.828574e-51 | -8.615850e-47 |
| Msa0234020 | Msa0326110 | 0.812403 | 4.315115e-51 | -8.615850e-47 |
| Msa0234020 | Msa0376910 | 0.821278 | 4.394944e-53 | -8.615850e-47 |
| Msa0234020 | Msa0379640 | 0.801745 | 7.790712e-49 | -8.615850e-47 |
| Msa0234020 | Msa0389810 | 0.801103 | 1.054325e-48 | -8.615850e-47 |
| Msa0234020 | Msa0468130 | 0.801858 | 7.384110e-49 | -8.615850e-47 |
| Msa0234020 | Msa0469990 | 0.813947 | 1.977318e-51 | -8.615850e-47 |
| Msa0234020 | Msa0471900 | 0.806721 | 7.168521e-50 | -8.615850e-47 |
| Msa0234020 | Msa0477080 | 0.817463 | 3.255234e-52 | -8.615850e-47 |
| Msa0234020 | Msa0484780 | 0.807824 | 4.185577e-50 | -8.615850e-47 |
| Msa0234020 | Msa0493630 | 0.813443 | 2.552932e-51 | -8.615850e-47 |
| Msa0234020 | Msa0521430 | 0.801097 | 1.057581e-48 | -8.615850e-47 |
| Msa0234020 | Msa0561230 | 0.806766 | 7.012356e-50 | -8.615850e-47 |
| Msa0234020 | Msa0575470 | 0.812298 | 4.547890e-51 | -8.615850e-47 |
| Msa0234020 | Msa0607050 | 0.803556 | 3.295056e-49 | -8.615850e-47 |
| Msa0234020 | Msa0608710 | 0.825743 | 3.968703e-54 | -8.615850e-47 |
| Msa0234020 | Msa0610430 | 0.805535 | 1.273740e-49 | -8.615850e-47 |
| Msa0234020 | Msa0653490 | 0.815172 | 1.059219e-51 | -8.615850e-47 |
| Msa0234020 | Msa0654720 | 0.809623 | 1.726663e-50 | -8.615850e-47 |
| Msa0234020 | Msa0673460 | 0.810159 | 1.323690e-50 | -8.615850e-47 |
| Msa0234020 | Msa0684330 | 0.800056 | 1.723303e-48 | -8.615850e-47 |
| Msa0234020 | Msa0698360 | 0.810231 | 1.277355e-50 | -8.615850e-47 |
| Msa0234020 | Msa0731180 | 0.830312 | 3.152276e-55 | -8.615850e-47 |
| Msa0234020 | Msa0750430 | 0.803698 | 3.078741e-49 | -8.615850e-47 |
| Msa0234020 | Msa0771580 | 0.804374 | 2.227581e-49 | -8.615850e-47 |
| Msa0234020 | Msa0771720 | 0.838378 | 2.980259e-57 | -8.615850e-47 |
| Msa0234020 | Msa0773840 | 0.817031 | 4.070747e-52 | -8.615850e-47 |
| Msa0234020 | Msa0795080 | 0.814197 | 1.741617e-51 | -8.615850e-47 |
| Msa0234020 | Msa0869120 | 0.803956 | 2.721957e-49 | -8.615850e-47 |
| Msa0234020 | Msa1002480 | 0.802662 | 5.044379e-49 | -8.615850e-47 |
| Msa0234020 | Msa1023920 | 0.809258 | 2.068365e-50 | -8.615850e-47 |
| Msa0234020 | Msa1034150 | 0.802525 | 5.382602e-49 | -8.615850e-47 |
| Msa0234020 | Msa1082500 | 0.823129 | 1.635296e-53 | -8.615850e-47 |
| Msa0234020 | Msa1107900 | 0.808273 | 3.357912e-50 | -8.615850e-47 |
| Msa0234020 | Msa1250890 | 0.815102 | 1.098118e-51 | -8.615850e-47 |
| Msa0234020 | Msa1276440 | 0.808273 | 3.358828e-50 | -8.615850e-47 |
| Msa0234020 | Msa1305660 | 0.802061 | 6.708813e-49 | -8.615850e-47 |
| Msa0234020 | Msa1333410 | 0.818679 | 1.727971e-52 | -8.615850e-47 |
| Msa0234020 | Msa1397120 | 0.821553 | 3.797262e-53 | -8.615850e-47 |
| Msa0234020 | Msa1401290 | 0.979884 | 5.877155e-149 | -8.615850e-47 |
| Msa0234020 | Msa1403890 | 0.815108 | 1.094546e-51 | -8.615850e-47 |
| Msa0234020 | Msa1424450 | 0.807064 | 6.066254e-50 | -8.615850e-47 |
| Msa0234020 | Msa1427230 | 0.814030 | 1.895914e-51 | -8.615850e-47 |
| Msa0234020 | Msa1430680 | 0.814098 | 1.831546e-51 | -8.615850e-47 |
| Msa0234020 | Msa1444740 | 0.824341 | 8.505390e-54 | -8.615850e-47 |
| Msa0234020 | Msa1460830 | 0.814132 | 1.800359e-51 | -8.615850e-47 |
| Msa0234020 | Msa1462840 | 0.965493 | 1.122586e-124 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0234020 | MtrunA17_Chr2g0281801 | 93.069 | 606 | 41 | 1 | 2 | 607 | 3 | 607 | 0.0 | 1120 |
| Msa0234020 | MtrunA17_Chr4g0015101 | 80.456 | 614 | 103 | 7 | 1 | 606 | 1 | 605 | 0.0 | 973 |
| Msa0234020 | MtrunA17_Chr2g0281811 | 80.782 | 614 | 103 | 6 | 1 | 606 | 1 | 607 | 0.0 | 942 |
| Msa0234020 | MtrunA17_Chr4g0015121 | 84.674 | 261 | 27 | 2 | 1 | 252 | 1 | 257 | 3.65e-157 | 459 |
| Msa0234020 | MtrunA17_Chr4g0015121 | 69.057 | 265 | 37 | 5 | 330 | 589 | 256 | 480 | 3.94e-104 | 323 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 142 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACCTTTGCTTTGCCATTT+TGG | 0.094294 | 2_2:-6485690 | Msa0234020:CDS |
| TGTTGTTCTTGCTCTTCTTT+AGG | 0.145727 | 2_2:+6486210 | None:intergenic |
| AGAAGACTAATAGTTGTTTA+AGG | 0.156260 | 2_2:-6484712 | Msa0234020:CDS |
| CCAGCAAACTCCGTATTAAT+TGG | 0.212601 | 2_2:+6484779 | None:intergenic |
| TTCTTGCTCCTTGATTTCTT+TGG | 0.230170 | 2_2:+6484914 | None:intergenic |
| GTTGTTCTTGCTCTTCTTTA+GGG | 0.239224 | 2_2:+6486211 | None:intergenic |
| GAAAGGTCGGGAGGGGAAAT+TGG | 0.243755 | 2_2:+6486096 | None:intergenic |
| GCTCTTCTTTAGGGTTGTTT+TGG | 0.254211 | 2_2:+6486220 | None:intergenic |
| ACGGATTTGTTGGAAGATTT+AGG | 0.255790 | 2_2:-6484680 | Msa0234020:CDS |
| ATTCAAATATTGATAGGTTT+TGG | 0.275330 | 2_2:-6485276 | Msa0234020:CDS |
| TGATGTACTGTCGGCGTAAA+TGG | 0.281215 | 2_2:+6485633 | None:intergenic |
| TATTTCTATGAAAGAATCTT+AGG | 0.288900 | 2_2:-6485730 | Msa0234020:CDS |
| TGCTGCTTGTCTTACCCTTA+AGG | 0.296185 | 2_2:+6485963 | None:intergenic |
| TGTTACGTGTCCATTGGTTT+TGG | 0.301487 | 2_2:-6484966 | Msa0234020:CDS |
| GAAGACTAATAGTTGTTTAA+GGG | 0.324028 | 2_2:-6484711 | Msa0234020:CDS |
| ATTGAGTTTGATAAGAGTTT+AGG | 0.335970 | 2_2:-6484851 | Msa0234020:CDS |
| GCTGCTTGTCTTACCCTTAA+GGG | 0.339143 | 2_2:+6485964 | None:intergenic |
| CCAATTAATACGGAGTTTGC+TGG | 0.344275 | 2_2:-6484779 | Msa0234020:CDS |
| AGATTCTTTCATAGAAATAA+AGG | 0.345545 | 2_2:+6485734 | None:intergenic |
| AAGATTTCAAAGACAAAGAT+TGG | 0.346760 | 2_2:-6485222 | Msa0234020:CDS |
| AAAACATTGTTGTAGGAAAT+AGG | 0.348303 | 2_2:-6486188 | Msa0234020:CDS |
| TTCATCAAATCAACCCTTAA+GGG | 0.351711 | 2_2:-6485977 | Msa0234020:CDS |
| AATAGGAGGAATGTTCTAAT+TGG | 0.356586 | 2_2:-6486171 | Msa0234020:CDS |
| ATTGGCCTTGGAGGACTTTG+TGG | 0.360187 | 2_2:-6486153 | Msa0234020:CDS |
| CTCACCATTCAAATATTGAT+AGG | 0.360856 | 2_2:-6485282 | Msa0234020:CDS |
| CTTCATCAAATCAACCCTTA+AGG | 0.361728 | 2_2:-6485978 | Msa0234020:CDS |
| TTGTTTAAGGGTTGGATTAA+CGG | 0.362141 | 2_2:-6484699 | Msa0234020:CDS |
| TGAACTTGAAGATCAAGGTT+AGG | 0.377636 | 2_2:+6485793 | None:intergenic |
| GTTACTTTGGTTCCAAGGTA+TGG | 0.381312 | 2_2:-6484632 | Msa0234020:CDS |
| ATCTTCAAGTTCATAACTCT+TGG | 0.384840 | 2_2:-6485783 | Msa0234020:CDS |
| CATTAATGATGAAGATGATA+AGG | 0.389930 | 2_2:-6484810 | Msa0234020:CDS |
| TCCATGTGGAACATTCTCTA+TGG | 0.390806 | 2_2:+6485396 | None:intergenic |
| GGAGAGTCGTAGTTCCAAAA+TGG | 0.399283 | 2_2:+6485676 | None:intergenic |
| TACCACTGAATGTGATTACT+TGG | 0.400770 | 2_2:+6486253 | None:intergenic |
| GGTTGGATTAACGGATTTGT+TGG | 0.401538 | 2_2:-6484690 | Msa0234020:CDS |
| GAACAACAAAACATTGTTGT+AGG | 0.404778 | 2_2:-6486195 | Msa0234020:CDS |
| TAAGAATCTTGTGAAGGTTA+AGG | 0.414983 | 2_2:-6485167 | Msa0234020:CDS |
| TGGAACTACGACTCTCCTAA+TGG | 0.417955 | 2_2:-6485670 | Msa0234020:CDS |
| AGGAATGTTCTAATTGGCCT+TGG | 0.425473 | 2_2:-6486165 | Msa0234020:CDS |
| TTTGTCTATACATTGTAGTA+AGG | 0.426525 | 2_2:+6485500 | None:intergenic |
| ATTGTTTGGTGTTGCACCTA+AGG | 0.429664 | 2_2:+6486050 | None:intergenic |
| GGAGAAAGAAGAAGAGGAAG+AGG | 0.440966 | 2_2:-6484891 | Msa0234020:CDS |
| GAGGGAAGTTGCATGCCATT+AGG | 0.441891 | 2_2:+6485655 | None:intergenic |
| GGTGATTAAGCCAATTAATA+CGG | 0.446630 | 2_2:-6484789 | Msa0234020:CDS |
| GGACAACAATTAATATTGTT+TGG | 0.448332 | 2_2:+6486036 | None:intergenic |
| GTAAGGCTTTCATGAGTTCA+AGG | 0.448450 | 2_2:+6485899 | None:intergenic |
| TACAAAACTACGTGGATCAC+TGG | 0.449934 | 2_2:+6485873 | None:intergenic |
| ATTGGAGAAGCTAGGGCAAA+AGG | 0.452064 | 2_2:+6486114 | None:intergenic |
| CACATGGACCAGTTCATAGA+TGG | 0.452517 | 2_2:-6485381 | Msa0234020:CDS |
| TGTGAAAATGGATGCGAAGA+AGG | 0.454166 | 2_2:+6486318 | None:intergenic |
| ACCATGGAATATCAACATCT+TGG | 0.455528 | 2_2:+6485104 | None:intergenic |
| GTGAAAATGGATGCGAAGAA+GGG | 0.456815 | 2_2:+6486319 | None:intergenic |
| GACATTGATTGTGTTAATGA+AGG | 0.456891 | 2_2:+6486362 | None:intergenic |
| ACTAATAGTTGTTTAAGGGT+TGG | 0.457888 | 2_2:-6484707 | Msa0234020:CDS |
| TTCTCTATGGATCCAGCACC+AGG | 0.458069 | 2_2:+6485409 | None:intergenic |
| TACTACAATGTATAGACAAA+TGG | 0.458391 | 2_2:-6485497 | Msa0234020:CDS |
| GGACCACATGTGGAAAGGTC+GGG | 0.458660 | 2_2:+6486084 | None:intergenic |
| CTTAAGGGTTGATTTGATGA+AGG | 0.460769 | 2_2:+6485979 | None:intergenic |
| GAACTTGAAGATCAAGGTTA+GGG | 0.463135 | 2_2:+6485794 | None:intergenic |
| ACAATTCCTTTCCCATACCT+TGG | 0.467192 | 2_2:+6484620 | None:intergenic |
| TAAAGGTACCATCTATGAAA+AGG | 0.468558 | 2_2:+6485751 | None:intergenic |
| AATGTTCTAATTGGCCTTGG+AGG | 0.476202 | 2_2:-6486162 | Msa0234020:CDS |
| CAAGAAGGAGAAAGAAGAAG+AGG | 0.479890 | 2_2:-6484897 | Msa0234020:CDS |
| TCACCACTCCATCTATGAAC+TGG | 0.479921 | 2_2:+6485373 | None:intergenic |
| AGCTAGGGCAAAAGGGTTAG+TGG | 0.480736 | 2_2:+6486122 | None:intergenic |
| TTTAAGTCTATGAGTGTTGG+AGG | 0.482226 | 2_2:+6485574 | None:intergenic |
| AGTTATGAACTTGAAGATCA+AGG | 0.484752 | 2_2:+6485788 | None:intergenic |
| ACCAAGATGTTGATATTCCA+TGG | 0.489583 | 2_2:-6485105 | Msa0234020:CDS |
| ACATGTGGAAAGGTCGGGAG+GGG | 0.493375 | 2_2:+6486089 | None:intergenic |
| ATACATTGTAGTAAGGTTTG+AGG | 0.494060 | 2_2:+6485507 | None:intergenic |
| ATGGATCCAGCACCAGGATC+GGG | 0.501520 | 2_2:+6485415 | None:intergenic |
| TTACTTTGGTTCCAAGGTAT+GGG | 0.503602 | 2_2:-6484631 | Msa0234020:CDS |
| TTGTGGTTACTTTGGTTCCA+AGG | 0.504871 | 2_2:-6484637 | Msa0234020:CDS |
| GATGAACCCGATCCTGGTGC+TGG | 0.506025 | 2_2:-6485421 | Msa0234020:CDS |
| CTCGGAAGCTCTTATCGTGC+CGG | 0.506112 | 2_2:-6485445 | Msa0234020:CDS |
| TGATAGCATTGTGGTTACTT+TGG | 0.510624 | 2_2:-6484645 | Msa0234020:CDS |
| GAGGTTGATGACTAGCGGTT+CGG | 0.511134 | 2_2:+6485593 | None:intergenic |
| AGAAGGGGAAATCTTTGAGT+TGG | 0.512161 | 2_2:+6486335 | None:intergenic |
| GCCGGTGATGAACCCGATCC+TGG | 0.512406 | 2_2:-6485427 | Msa0234020:CDS |
| GGTCCACCGGATCTACCCTT+AGG | 0.513048 | 2_2:-6486066 | Msa0234020:CDS |
| AAAACCTATCAATATTTGAA+TGG | 0.514138 | 2_2:+6485278 | None:intergenic |
| TTGTGATCATGGGAAGAATG+AGG | 0.516496 | 2_2:+6484740 | None:intergenic |
| GTTCGGAGTTTGTCGTAAAG+AGG | 0.519726 | 2_2:+6485610 | None:intergenic |
| GATGTTGATGATGATGCAAA+TGG | 0.521124 | 2_2:-6485538 | Msa0234020:CDS |
| AATGTGATTACTTGGCGTCT+TGG | 0.521989 | 2_2:+6486261 | None:intergenic |
| TATAGACAAATGGTCTCAAA+CGG | 0.524321 | 2_2:-6485487 | Msa0234020:CDS |
| TGAAGAGGCCAAAGAAATCA+AGG | 0.524353 | 2_2:-6484922 | Msa0234020:CDS |
| ACCAGGATCGGGTTCATCAC+CGG | 0.526470 | 2_2:+6485426 | None:intergenic |
| CCTTTCCACATGTGGTCCAC+CGG | 0.527586 | 2_2:-6486079 | Msa0234020:CDS |
| CAAAATGGCAAAGCAAAGGT+TGG | 0.533090 | 2_2:+6485691 | None:intergenic |
| GTTGCACCTAAGGGTAGATC+CGG | 0.534058 | 2_2:+6486060 | None:intergenic |
| TATGGATCCAGCACCAGGAT+CGG | 0.534663 | 2_2:+6485414 | None:intergenic |
| TTGGAGAAGCTAGGGCAAAA+GGG | 0.536024 | 2_2:+6486115 | None:intergenic |
| GAGTTATGTTACGTGTCCAT+TGG | 0.537060 | 2_2:-6484972 | Msa0234020:CDS |
| CCACATGTGGAAAGGTCGGG+AGG | 0.538572 | 2_2:+6486087 | None:intergenic |
| AAGTTTAAGTCTATGAGTGT+TGG | 0.542990 | 2_2:+6485571 | None:intergenic |
| TGATTGTGTTAATGAAGGCA+AGG | 0.544583 | 2_2:+6486367 | None:intergenic |
| ACGTGGATCACTGGATGGTA+AGG | 0.547230 | 2_2:+6485882 | None:intergenic |
| GCAACCTAACTTTGAAAACA+TGG | 0.554305 | 2_2:-6485344 | Msa0234020:CDS |
| GTTGGAAGATTTAGGAGCTG+AGG | 0.554915 | 2_2:-6484672 | Msa0234020:CDS |
| GATGGTGCATATTCTCAAGT+TGG | 0.555692 | 2_2:-6485820 | Msa0234020:CDS |
| CCTCCCGACCTTTCCACATG+TGG | 0.563094 | 2_2:-6486087 | Msa0234020:CDS |
| CACATGTGGAAAGGTCGGGA+GGG | 0.565843 | 2_2:+6486088 | None:intergenic |
| AAAGAAATCAAGGAGCAAGA+AGG | 0.566088 | 2_2:-6484912 | Msa0234020:CDS |
| TGGACCACATGTGGAAAGGT+CGG | 0.567741 | 2_2:+6486083 | None:intergenic |
| TCTATATGGAAAACACTTGG+TGG | 0.568653 | 2_2:-6485253 | Msa0234020:CDS |
| CTATATGGAAAACACTTGGT+GGG | 0.577886 | 2_2:-6485252 | Msa0234020:CDS |
| ACAACATTATCCAAAACCAA+TGG | 0.579529 | 2_2:+6484956 | None:intergenic |
| TTGGTTCCAAGGTATGGGAA+AGG | 0.581052 | 2_2:-6484626 | Msa0234020:CDS |
| TGTACTGTCGGCGTAAATGG+AGG | 0.581530 | 2_2:+6485636 | None:intergenic |
| ATCCATTGTGCTTATTGTGA+TGG | 0.582664 | 2_2:-6485838 | Msa0234020:CDS |
| TTGTTTGGTGTTGCACCTAA+GGG | 0.584388 | 2_2:+6486051 | None:intergenic |
| TAGATCCGGTGGACCACATG+TGG | 0.585860 | 2_2:+6486074 | None:intergenic |
| AGGGGAAATTGGAGAAGCTA+GGG | 0.590414 | 2_2:+6486107 | None:intergenic |
| GAGGGGAAATTGGAGAAGCT+AGG | 0.590748 | 2_2:+6486106 | None:intergenic |
| TGAAAATGGATGCGAAGAAG+GGG | 0.592532 | 2_2:+6486320 | None:intergenic |
| TAAGGCTTTCATGAGTTCAA+GGG | 0.593472 | 2_2:+6485900 | None:intergenic |
| TTGTTAGTACAATTGTGAAG+AGG | 0.594333 | 2_2:-6484937 | Msa0234020:CDS |
| TGGTCTATATGGAAAACACT+TGG | 0.595881 | 2_2:-6485256 | Msa0234020:CDS |
| TGAAAATAAGAATCTTGTGA+AGG | 0.601196 | 2_2:-6485173 | Msa0234020:CDS |
| CCGGTGGACCACATGTGGAA+AGG | 0.609583 | 2_2:+6486079 | None:intergenic |
| CGCCAAGTAATCACATTCAG+TGG | 0.612736 | 2_2:-6486255 | Msa0234020:CDS |
| CGGCACGATAAGAGCTTCCG+AGG | 0.613285 | 2_2:+6485446 | None:intergenic |
| AAACTACGTGGATCACTGGA+TGG | 0.614635 | 2_2:+6485877 | None:intergenic |
| GTACTGTCGGCGTAAATGGA+GGG | 0.618793 | 2_2:+6485637 | None:intergenic |
| TTAGGTTTAGCATTTAACCA+TGG | 0.619630 | 2_2:+6485088 | None:intergenic |
| GCACCTAAGGGTAGATCCGG+TGG | 0.622516 | 2_2:+6486063 | None:intergenic |
| GTTCCAAAATGGCAAAGCAA+AGG | 0.631068 | 2_2:+6485687 | None:intergenic |
| GTAAAGAGGTGATGTACTGT+CGG | 0.631500 | 2_2:+6485624 | None:intergenic |
| CAACCTAACTTTGAAAACAT+GGG | 0.632027 | 2_2:-6485343 | Msa0234020:CDS |
| CACCATCACAATAAGCACAA+TGG | 0.632308 | 2_2:+6485836 | None:intergenic |
| GGACCAGTTCATAGATGGAG+TGG | 0.632855 | 2_2:-6485376 | Msa0234020:CDS |
| GATTGTGTTAATGAAGGCAA+GGG | 0.634167 | 2_2:+6486368 | None:intergenic |
| CATCTATGAACTGGTCCATG+TGG | 0.636161 | 2_2:+6485382 | None:intergenic |
| AAGTACCACAAAGTCCTCCA+AGG | 0.662236 | 2_2:+6486148 | None:intergenic |
| TGTTGGAGGTTGATGACTAG+CGG | 0.671745 | 2_2:+6485588 | None:intergenic |
| TCCATAGAGAATGTTCCACA+TGG | 0.674858 | 2_2:-6485397 | Msa0234020:CDS |
| GCTTGTTGTACAAAACTACG+TGG | 0.685420 | 2_2:+6485865 | None:intergenic |
| ACATTGTTGTAGGAAATAGG+AGG | 0.694266 | 2_2:-6486185 | Msa0234020:CDS |
| GTGCAAGTGAGATTAACTCA+AGG | 0.695549 | 2_2:-6484994 | Msa0234020:CDS |
| TGAGGATGATGATAGCATTG+TGG | 0.720047 | 2_2:-6484654 | Msa0234020:CDS |
| ATTGTGTTAATGAAGGCAAG+GGG | 0.729284 | 2_2:+6486369 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATATACAAAAAAATG+TGG | - | chr2_2:6485911-6485930 | Msa0234020:CDS | 10.0% |
| !! | AAAAAATATACAAAAAAATG+TGG | - | chr2_2:6485911-6485930 | Msa0234020:CDS | 10.0% |
| !!! | TTTGTAATTTATGATTTTTG+TGG | + | chr2_2:6484965-6484984 | None:intergenic | 15.0% |
| !!! | TTTTGTATATTTTTTCTACA+TGG | + | chr2_2:6485906-6485925 | None:intergenic | 15.0% |
| !!! | TTTGTAATTTATGATTTTTG+TGG | + | chr2_2:6484965-6484984 | None:intergenic | 15.0% |
| !!! | TTTTGTATATTTTTTCTACA+TGG | + | chr2_2:6485906-6485925 | None:intergenic | 15.0% |
| !!! | TTTTGTTGTTTTTGTGAAAA+TGG | + | chr2_2:6484664-6484683 | None:intergenic | 20.0% |
| !!! | TTTATGATTTTTGTGGAATT+TGG | + | chr2_2:6484958-6484977 | None:intergenic | 20.0% |
| !! | AGATTCTTTCATAGAAATAA+AGG | + | chr2_2:6485236-6485255 | None:intergenic | 20.0% |
| !!! | TATTTCTATGAAAGAATCTT+AGG | - | chr2_2:6485237-6485256 | Msa0234020:CDS | 20.0% |
| !! | AAAACCTATCAATATTTGAA+TGG | + | chr2_2:6485692-6485711 | None:intergenic | 20.0% |
| !!! | ATTCAAATATTGATAGGTTT+TGG | - | chr2_2:6485691-6485710 | Msa0234020:CDS | 20.0% |
| !!! | ATATTTTTTCTACATGGTTT+AGG | + | chr2_2:6485900-6485919 | None:intergenic | 20.0% |
| !!! | TTTTGTTGTTTTTGTGAAAA+TGG | + | chr2_2:6484664-6484683 | None:intergenic | 20.0% |
| !!! | TTTATGATTTTTGTGGAATT+TGG | + | chr2_2:6484958-6484977 | None:intergenic | 20.0% |
| !! | AGATTCTTTCATAGAAATAA+AGG | + | chr2_2:6485236-6485255 | None:intergenic | 20.0% |
| !!! | TATTTCTATGAAAGAATCTT+AGG | - | chr2_2:6485237-6485256 | Msa0234020:CDS | 20.0% |
| !! | AAAACCTATCAATATTTGAA+TGG | + | chr2_2:6485692-6485711 | None:intergenic | 20.0% |
| !!! | ATTCAAATATTGATAGGTTT+TGG | - | chr2_2:6485691-6485710 | Msa0234020:CDS | 20.0% |
| !!! | ATATTTTTTCTACATGGTTT+AGG | + | chr2_2:6485900-6485919 | None:intergenic | 20.0% |
| ! | AAAACATTGTTGTAGGAAAT+AGG | - | chr2_2:6484779-6484798 | Msa0234020:CDS | 25.0% |
| ! | GGACAACAATTAATATTGTT+TGG | + | chr2_2:6484934-6484953 | None:intergenic | 25.0% |
| !!! | TCTTTTTTCCTTTTCATAGA+TGG | - | chr2_2:6485208-6485227 | Msa0234020:CDS | 25.0% |
| ! | TTTGTCTATACATTGTAGTA+AGG | + | chr2_2:6485470-6485489 | None:intergenic | 25.0% |
| ! | TACTACAATGTATAGACAAA+TGG | - | chr2_2:6485470-6485489 | Msa0234020:CDS | 25.0% |
| ! | AAGATTTCAAAGACAAAGAT+TGG | - | chr2_2:6485745-6485764 | Msa0234020:CDS | 25.0% |
| ! | TGAAAATAAGAATCTTGTGA+AGG | - | chr2_2:6485794-6485813 | Msa0234020:CDS | 25.0% |
| ! | TGTCTTGACACAAAAAAATT+AGG | - | chr2_2:6485831-6485850 | Msa0234020:CDS | 25.0% |
| !!! | CAAGGAAATTTTTTTGGTAT+TGG | - | chr2_2:6485942-6485961 | Msa0234020:CDS | 25.0% |
| ! | ATTGAGTTTGATAAGAGTTT+AGG | - | chr2_2:6486116-6486135 | Msa0234020:CDS | 25.0% |
| ! | CATTAATGATGAAGATGATA+AGG | - | chr2_2:6486157-6486176 | Msa0234020:CDS | 25.0% |
| ! | AGAAGACTAATAGTTGTTTA+AGG | - | chr2_2:6486255-6486274 | Msa0234020:CDS | 25.0% |
| ! | GAAGACTAATAGTTGTTTAA+GGG | - | chr2_2:6486256-6486275 | Msa0234020:CDS | 25.0% |
| ! | AAAACATTGTTGTAGGAAAT+AGG | - | chr2_2:6484779-6484798 | Msa0234020:CDS | 25.0% |
| ! | GGACAACAATTAATATTGTT+TGG | + | chr2_2:6484934-6484953 | None:intergenic | 25.0% |
| !!! | TCTTTTTTCCTTTTCATAGA+TGG | - | chr2_2:6485208-6485227 | Msa0234020:CDS | 25.0% |
| ! | TTTGTCTATACATTGTAGTA+AGG | + | chr2_2:6485470-6485489 | None:intergenic | 25.0% |
| ! | TACTACAATGTATAGACAAA+TGG | - | chr2_2:6485470-6485489 | Msa0234020:CDS | 25.0% |
| ! | AAGATTTCAAAGACAAAGAT+TGG | - | chr2_2:6485745-6485764 | Msa0234020:CDS | 25.0% |
| ! | TGAAAATAAGAATCTTGTGA+AGG | - | chr2_2:6485794-6485813 | Msa0234020:CDS | 25.0% |
| ! | TGTCTTGACACAAAAAAATT+AGG | - | chr2_2:6485831-6485850 | Msa0234020:CDS | 25.0% |
| !!! | CAAGGAAATTTTTTTGGTAT+TGG | - | chr2_2:6485942-6485961 | Msa0234020:CDS | 25.0% |
| ! | ATTGAGTTTGATAAGAGTTT+AGG | - | chr2_2:6486116-6486135 | Msa0234020:CDS | 25.0% |
| ! | CATTAATGATGAAGATGATA+AGG | - | chr2_2:6486157-6486176 | Msa0234020:CDS | 25.0% |
| ! | AGAAGACTAATAGTTGTTTA+AGG | - | chr2_2:6486255-6486274 | Msa0234020:CDS | 25.0% |
| ! | GAAGACTAATAGTTGTTTAA+GGG | - | chr2_2:6486256-6486275 | Msa0234020:CDS | 25.0% |
| ! | GACATTGATTGTGTTAATGA+AGG | + | chr2_2:6484608-6484627 | None:intergenic | 30.0% |
| GAACAACAAAACATTGTTGT+AGG | - | chr2_2:6484772-6484791 | Msa0234020:CDS | 30.0% | |
| AATAGGAGGAATGTTCTAAT+TGG | - | chr2_2:6484796-6484815 | Msa0234020:CDS | 30.0% | |
| ! | ATGATTTTTGTGGAATTTGG+TGG | + | chr2_2:6484955-6484974 | None:intergenic | 30.0% |
| TTCATCAAATCAACCCTTAA+GGG | - | chr2_2:6484990-6485009 | Msa0234020:CDS | 30.0% | |
| AGTTATGAACTTGAAGATCA+AGG | + | chr2_2:6485182-6485201 | None:intergenic | 30.0% | |
| ! | ATCTTCAAGTTCATAACTCT+TGG | - | chr2_2:6485184-6485203 | Msa0234020:CDS | 30.0% |
| !! | TAAAGGTACCATCTATGAAA+AGG | + | chr2_2:6485219-6485238 | None:intergenic | 30.0% |
| AAGTTTAAGTCTATGAGTGT+TGG | + | chr2_2:6485399-6485418 | None:intergenic | 30.0% | |
| ATACATTGTAGTAAGGTTTG+AGG | + | chr2_2:6485463-6485482 | None:intergenic | 30.0% | |
| TATAGACAAATGGTCTCAAA+CGG | - | chr2_2:6485480-6485499 | Msa0234020:CDS | 30.0% | |
| ! | AAAACTTCAAGTCTTTTCCT+CGG | - | chr2_2:6485504-6485523 | Msa0234020:CDS | 30.0% |
| ! | CAACCTAACTTTGAAAACAT+GGG | - | chr2_2:6485624-6485643 | Msa0234020:CDS | 30.0% |
| GAATGGTGAGAGAAAAAAAT+AGG | + | chr2_2:6485675-6485694 | None:intergenic | 30.0% | |
| CTCACCATTCAAATATTGAT+AGG | - | chr2_2:6485685-6485704 | Msa0234020:CDS | 30.0% | |
| !! | TTGATAGGTTTTGGTCTATA+TGG | - | chr2_2:6485700-6485719 | Msa0234020:CDS | 30.0% |
| TAAGAATCTTGTGAAGGTTA+AGG | - | chr2_2:6485800-6485819 | Msa0234020:CDS | 30.0% | |
| TTAGGTTTAGCATTTAACCA+TGG | + | chr2_2:6485882-6485901 | None:intergenic | 30.0% | |
| !!! | GTTGCACAAGGAAATTTTTT+TGG | - | chr2_2:6485936-6485955 | Msa0234020:CDS | 30.0% |
| ACAACATTATCCAAAACCAA+TGG | + | chr2_2:6486014-6486033 | None:intergenic | 30.0% | |
| TTGTTAGTACAATTGTGAAG+AGG | - | chr2_2:6486030-6486049 | Msa0234020:CDS | 30.0% | |
| !! | AAGAGGTTTTAGTGATTGAA+GGG | - | chr2_2:6486093-6486112 | Msa0234020:CDS | 30.0% |
| GGTGATTAAGCCAATTAATA+CGG | - | chr2_2:6486178-6486197 | Msa0234020:CDS | 30.0% | |
| ! | CTTCTTCTTTTTGTGATCAT+GGG | + | chr2_2:6486240-6486259 | None:intergenic | 30.0% |
| ! | TCTTCTTCTTTTTGTGATCA+TGG | + | chr2_2:6486241-6486260 | None:intergenic | 30.0% |
| ACTAATAGTTGTTTAAGGGT+TGG | - | chr2_2:6486260-6486279 | Msa0234020:CDS | 30.0% | |
| TTGTTTAAGGGTTGGATTAA+CGG | - | chr2_2:6486268-6486287 | Msa0234020:CDS | 30.0% | |
| ! | GACATTGATTGTGTTAATGA+AGG | + | chr2_2:6484608-6484627 | None:intergenic | 30.0% |
| GAACAACAAAACATTGTTGT+AGG | - | chr2_2:6484772-6484791 | Msa0234020:CDS | 30.0% | |
| AATAGGAGGAATGTTCTAAT+TGG | - | chr2_2:6484796-6484815 | Msa0234020:CDS | 30.0% | |
| ! | ATGATTTTTGTGGAATTTGG+TGG | + | chr2_2:6484955-6484974 | None:intergenic | 30.0% |
| TTCATCAAATCAACCCTTAA+GGG | - | chr2_2:6484990-6485009 | Msa0234020:CDS | 30.0% | |
| AGTTATGAACTTGAAGATCA+AGG | + | chr2_2:6485182-6485201 | None:intergenic | 30.0% | |
| ! | ATCTTCAAGTTCATAACTCT+TGG | - | chr2_2:6485184-6485203 | Msa0234020:CDS | 30.0% |
| !! | TAAAGGTACCATCTATGAAA+AGG | + | chr2_2:6485219-6485238 | None:intergenic | 30.0% |
| AAGTTTAAGTCTATGAGTGT+TGG | + | chr2_2:6485399-6485418 | None:intergenic | 30.0% | |
| ATACATTGTAGTAAGGTTTG+AGG | + | chr2_2:6485463-6485482 | None:intergenic | 30.0% | |
| TATAGACAAATGGTCTCAAA+CGG | - | chr2_2:6485480-6485499 | Msa0234020:CDS | 30.0% | |
| ! | AAAACTTCAAGTCTTTTCCT+CGG | - | chr2_2:6485504-6485523 | Msa0234020:CDS | 30.0% |
| ! | CAACCTAACTTTGAAAACAT+GGG | - | chr2_2:6485624-6485643 | Msa0234020:CDS | 30.0% |
| GAATGGTGAGAGAAAAAAAT+AGG | + | chr2_2:6485675-6485694 | None:intergenic | 30.0% | |
| CTCACCATTCAAATATTGAT+AGG | - | chr2_2:6485685-6485704 | Msa0234020:CDS | 30.0% | |
| !! | TTGATAGGTTTTGGTCTATA+TGG | - | chr2_2:6485700-6485719 | Msa0234020:CDS | 30.0% |
| TAAGAATCTTGTGAAGGTTA+AGG | - | chr2_2:6485800-6485819 | Msa0234020:CDS | 30.0% | |
| TTAGGTTTAGCATTTAACCA+TGG | + | chr2_2:6485882-6485901 | None:intergenic | 30.0% | |
| !!! | GTTGCACAAGGAAATTTTTT+TGG | - | chr2_2:6485936-6485955 | Msa0234020:CDS | 30.0% |
| ACAACATTATCCAAAACCAA+TGG | + | chr2_2:6486014-6486033 | None:intergenic | 30.0% | |
| TTGTTAGTACAATTGTGAAG+AGG | - | chr2_2:6486030-6486049 | Msa0234020:CDS | 30.0% | |
| !! | AAGAGGTTTTAGTGATTGAA+GGG | - | chr2_2:6486093-6486112 | Msa0234020:CDS | 30.0% |
| GGTGATTAAGCCAATTAATA+CGG | - | chr2_2:6486178-6486197 | Msa0234020:CDS | 30.0% | |
| ! | CTTCTTCTTTTTGTGATCAT+GGG | + | chr2_2:6486240-6486259 | None:intergenic | 30.0% |
| ! | TCTTCTTCTTTTTGTGATCA+TGG | + | chr2_2:6486241-6486260 | None:intergenic | 30.0% |
| ACTAATAGTTGTTTAAGGGT+TGG | - | chr2_2:6486260-6486279 | Msa0234020:CDS | 30.0% | |
| TTGTTTAAGGGTTGGATTAA+CGG | - | chr2_2:6486268-6486287 | Msa0234020:CDS | 30.0% | |
| ATTGTGTTAATGAAGGCAAG+GGG | + | chr2_2:6484601-6484620 | None:intergenic | 35.0% | |
| GATTGTGTTAATGAAGGCAA+GGG | + | chr2_2:6484602-6484621 | None:intergenic | 35.0% | |
| TGATTGTGTTAATGAAGGCA+AGG | + | chr2_2:6484603-6484622 | None:intergenic | 35.0% | |
| TACCACTGAATGTGATTACT+TGG | + | chr2_2:6484717-6484736 | None:intergenic | 35.0% | |
| GTTGTTCTTGCTCTTCTTTA+GGG | + | chr2_2:6484759-6484778 | None:intergenic | 35.0% | |
| TGTTGTTCTTGCTCTTCTTT+AGG | + | chr2_2:6484760-6484779 | None:intergenic | 35.0% | |
| ACATTGTTGTAGGAAATAGG+AGG | - | chr2_2:6484782-6484801 | Msa0234020:CDS | 35.0% | |
| !! | CTTAAGGGTTGATTTGATGA+AGG | + | chr2_2:6484991-6485010 | None:intergenic | 35.0% |
| CTTCATCAAATCAACCCTTA+AGG | - | chr2_2:6484989-6485008 | Msa0234020:CDS | 35.0% | |
| TAAGGCTTTCATGAGTTCAA+GGG | + | chr2_2:6485070-6485089 | None:intergenic | 35.0% | |
| ATCCATTGTGCTTATTGTGA+TGG | - | chr2_2:6485129-6485148 | Msa0234020:CDS | 35.0% | |
| GAACTTGAAGATCAAGGTTA+GGG | + | chr2_2:6485176-6485195 | None:intergenic | 35.0% | |
| TGAACTTGAAGATCAAGGTT+AGG | + | chr2_2:6485177-6485196 | None:intergenic | 35.0% | |
| !! | TTTAAGTCTATGAGTGTTGG+AGG | + | chr2_2:6485396-6485415 | None:intergenic | 35.0% |
| !! | GATGTTGATGATGATGCAAA+TGG | - | chr2_2:6485429-6485448 | Msa0234020:CDS | 35.0% |
| ! | GCAACCTAACTTTGAAAACA+TGG | - | chr2_2:6485623-6485642 | Msa0234020:CDS | 35.0% |
| ! | ACTCCCATGTTTTCAAAGTT+AGG | + | chr2_2:6485630-6485649 | None:intergenic | 35.0% |
| TGGTCTATATGGAAAACACT+TGG | - | chr2_2:6485711-6485730 | Msa0234020:CDS | 35.0% | |
| TCTATATGGAAAACACTTGG+TGG | - | chr2_2:6485714-6485733 | Msa0234020:CDS | 35.0% | |
| CTATATGGAAAACACTTGGT+GGG | - | chr2_2:6485715-6485734 | Msa0234020:CDS | 35.0% | |
| ACCAAGATGTTGATATTCCA+TGG | - | chr2_2:6485862-6485881 | Msa0234020:CDS | 35.0% | |
| ACCATGGAATATCAACATCT+TGG | + | chr2_2:6485866-6485885 | None:intergenic | 35.0% | |
| AAAAATGTGGAAGTTGCACA+AGG | - | chr2_2:6485924-6485943 | Msa0234020:CDS | 35.0% | |
| TTCTTGCTCCTTGATTTCTT+TGG | + | chr2_2:6486056-6486075 | None:intergenic | 35.0% | |
| AAAGAAATCAAGGAGCAAGA+AGG | - | chr2_2:6486055-6486074 | Msa0234020:CDS | 35.0% | |
| !! | GAAGAGGTTTTAGTGATTGA+AGG | - | chr2_2:6486092-6486111 | Msa0234020:CDS | 35.0% |
| !! | ACGGATTTGTTGGAAGATTT+AGG | - | chr2_2:6486287-6486306 | Msa0234020:CDS | 35.0% |
| TGATAGCATTGTGGTTACTT+TGG | - | chr2_2:6486322-6486341 | Msa0234020:CDS | 35.0% | |
| ! | TTACTTTGGTTCCAAGGTAT+GGG | - | chr2_2:6486336-6486355 | Msa0234020:CDS | 35.0% |
| ATTGTGTTAATGAAGGCAAG+GGG | + | chr2_2:6484601-6484620 | None:intergenic | 35.0% | |
| GATTGTGTTAATGAAGGCAA+GGG | + | chr2_2:6484602-6484621 | None:intergenic | 35.0% | |
| TGATTGTGTTAATGAAGGCA+AGG | + | chr2_2:6484603-6484622 | None:intergenic | 35.0% | |
| TACCACTGAATGTGATTACT+TGG | + | chr2_2:6484717-6484736 | None:intergenic | 35.0% | |
| GTTGTTCTTGCTCTTCTTTA+GGG | + | chr2_2:6484759-6484778 | None:intergenic | 35.0% | |
| TGTTGTTCTTGCTCTTCTTT+AGG | + | chr2_2:6484760-6484779 | None:intergenic | 35.0% | |
| ACATTGTTGTAGGAAATAGG+AGG | - | chr2_2:6484782-6484801 | Msa0234020:CDS | 35.0% | |
| !! | CTTAAGGGTTGATTTGATGA+AGG | + | chr2_2:6484991-6485010 | None:intergenic | 35.0% |
| CTTCATCAAATCAACCCTTA+AGG | - | chr2_2:6484989-6485008 | Msa0234020:CDS | 35.0% | |
| TAAGGCTTTCATGAGTTCAA+GGG | + | chr2_2:6485070-6485089 | None:intergenic | 35.0% | |
| ATCCATTGTGCTTATTGTGA+TGG | - | chr2_2:6485129-6485148 | Msa0234020:CDS | 35.0% | |
| GAACTTGAAGATCAAGGTTA+GGG | + | chr2_2:6485176-6485195 | None:intergenic | 35.0% | |
| TGAACTTGAAGATCAAGGTT+AGG | + | chr2_2:6485177-6485196 | None:intergenic | 35.0% | |
| !! | TTTAAGTCTATGAGTGTTGG+AGG | + | chr2_2:6485396-6485415 | None:intergenic | 35.0% |
| !! | GATGTTGATGATGATGCAAA+TGG | - | chr2_2:6485429-6485448 | Msa0234020:CDS | 35.0% |
| ! | GCAACCTAACTTTGAAAACA+TGG | - | chr2_2:6485623-6485642 | Msa0234020:CDS | 35.0% |
| ! | ACTCCCATGTTTTCAAAGTT+AGG | + | chr2_2:6485630-6485649 | None:intergenic | 35.0% |
| TGGTCTATATGGAAAACACT+TGG | - | chr2_2:6485711-6485730 | Msa0234020:CDS | 35.0% | |
| TCTATATGGAAAACACTTGG+TGG | - | chr2_2:6485714-6485733 | Msa0234020:CDS | 35.0% | |
| CTATATGGAAAACACTTGGT+GGG | - | chr2_2:6485715-6485734 | Msa0234020:CDS | 35.0% | |
| ACCAAGATGTTGATATTCCA+TGG | - | chr2_2:6485862-6485881 | Msa0234020:CDS | 35.0% | |
| ACCATGGAATATCAACATCT+TGG | + | chr2_2:6485866-6485885 | None:intergenic | 35.0% | |
| AAAAATGTGGAAGTTGCACA+AGG | - | chr2_2:6485924-6485943 | Msa0234020:CDS | 35.0% | |
| TTCTTGCTCCTTGATTTCTT+TGG | + | chr2_2:6486056-6486075 | None:intergenic | 35.0% | |
| AAAGAAATCAAGGAGCAAGA+AGG | - | chr2_2:6486055-6486074 | Msa0234020:CDS | 35.0% | |
| !! | GAAGAGGTTTTAGTGATTGA+AGG | - | chr2_2:6486092-6486111 | Msa0234020:CDS | 35.0% |
| !! | ACGGATTTGTTGGAAGATTT+AGG | - | chr2_2:6486287-6486306 | Msa0234020:CDS | 35.0% |
| TGATAGCATTGTGGTTACTT+TGG | - | chr2_2:6486322-6486341 | Msa0234020:CDS | 35.0% | |
| ! | TTACTTTGGTTCCAAGGTAT+GGG | - | chr2_2:6486336-6486355 | Msa0234020:CDS | 35.0% |
| AGAAGGGGAAATCTTTGAGT+TGG | + | chr2_2:6484635-6484654 | None:intergenic | 40.0% | |
| TGAAAATGGATGCGAAGAAG+GGG | + | chr2_2:6484650-6484669 | None:intergenic | 40.0% | |
| GTGAAAATGGATGCGAAGAA+GGG | + | chr2_2:6484651-6484670 | None:intergenic | 40.0% | |
| TGTGAAAATGGATGCGAAGA+AGG | + | chr2_2:6484652-6484671 | None:intergenic | 40.0% | |
| AATGTGATTACTTGGCGTCT+TGG | + | chr2_2:6484709-6484728 | None:intergenic | 40.0% | |
| !!! | GCTCTTCTTTAGGGTTGTTT+TGG | + | chr2_2:6484750-6484769 | None:intergenic | 40.0% |
| ! | AGGAATGTTCTAATTGGCCT+TGG | - | chr2_2:6484802-6484821 | Msa0234020:CDS | 40.0% |
| !! | AATGTTCTAATTGGCCTTGG+AGG | - | chr2_2:6484805-6484824 | Msa0234020:CDS | 40.0% |
| !! | TTGTTTGGTGTTGCACCTAA+GGG | + | chr2_2:6484919-6484938 | None:intergenic | 40.0% |
| !! | ATTGTTTGGTGTTGCACCTA+AGG | + | chr2_2:6484920-6484939 | None:intergenic | 40.0% |
| GTAAGGCTTTCATGAGTTCA+AGG | + | chr2_2:6485071-6485090 | None:intergenic | 40.0% | |
| TACAAAACTACGTGGATCAC+TGG | + | chr2_2:6485097-6485116 | None:intergenic | 40.0% | |
| !! | GCTTGTTGTACAAAACTACG+TGG | + | chr2_2:6485105-6485124 | None:intergenic | 40.0% |
| CACCATCACAATAAGCACAA+TGG | + | chr2_2:6485134-6485153 | None:intergenic | 40.0% | |
| GATGGTGCATATTCTCAAGT+TGG | - | chr2_2:6485147-6485166 | Msa0234020:CDS | 40.0% | |
| CAAAATGGCAAAGCAAAGGT+TGG | + | chr2_2:6485279-6485298 | None:intergenic | 40.0% | |
| !! | CAACCTTTGCTTTGCCATTT+TGG | - | chr2_2:6485277-6485296 | Msa0234020:CDS | 40.0% |
| GTTCCAAAATGGCAAAGCAA+AGG | + | chr2_2:6485283-6485302 | None:intergenic | 40.0% | |
| GTAAAGAGGTGATGTACTGT+CGG | + | chr2_2:6485346-6485365 | None:intergenic | 40.0% | |
| TCCATAGAGAATGTTCCACA+TGG | - | chr2_2:6485570-6485589 | Msa0234020:CDS | 40.0% | |
| TCCATGTGGAACATTCTCTA+TGG | + | chr2_2:6485574-6485593 | None:intergenic | 40.0% | |
| GTGCAAGTGAGATTAACTCA+AGG | - | chr2_2:6485973-6485992 | Msa0234020:CDS | 40.0% | |
| GAGTTATGTTACGTGTCCAT+TGG | - | chr2_2:6485995-6486014 | Msa0234020:CDS | 40.0% | |
| !!! | TGTTACGTGTCCATTGGTTT+TGG | - | chr2_2:6486001-6486020 | Msa0234020:CDS | 40.0% |
| TGAAGAGGCCAAAGAAATCA+AGG | - | chr2_2:6486045-6486064 | Msa0234020:CDS | 40.0% | |
| CAAGAAGGAGAAAGAAGAAG+AGG | - | chr2_2:6486070-6486089 | Msa0234020:CDS | 40.0% | |
| CCAGCAAACTCCGTATTAAT+TGG | + | chr2_2:6486191-6486210 | None:intergenic | 40.0% | |
| CCAATTAATACGGAGTTTGC+TGG | - | chr2_2:6486188-6486207 | Msa0234020:CDS | 40.0% | |
| TTGTGATCATGGGAAGAATG+AGG | + | chr2_2:6486230-6486249 | None:intergenic | 40.0% | |
| !! | GGTTGGATTAACGGATTTGT+TGG | - | chr2_2:6486277-6486296 | Msa0234020:CDS | 40.0% |
| TGAGGATGATGATAGCATTG+TGG | - | chr2_2:6486313-6486332 | Msa0234020:CDS | 40.0% | |
| ! | TTGTGGTTACTTTGGTTCCA+AGG | - | chr2_2:6486330-6486349 | Msa0234020:CDS | 40.0% |
| ! | GTTACTTTGGTTCCAAGGTA+TGG | - | chr2_2:6486335-6486354 | Msa0234020:CDS | 40.0% |
| ACAATTCCTTTCCCATACCT+TGG | + | chr2_2:6486350-6486369 | None:intergenic | 40.0% | |
| AGAAGGGGAAATCTTTGAGT+TGG | + | chr2_2:6484635-6484654 | None:intergenic | 40.0% | |
| TGAAAATGGATGCGAAGAAG+GGG | + | chr2_2:6484650-6484669 | None:intergenic | 40.0% | |
| GTGAAAATGGATGCGAAGAA+GGG | + | chr2_2:6484651-6484670 | None:intergenic | 40.0% | |
| TGTGAAAATGGATGCGAAGA+AGG | + | chr2_2:6484652-6484671 | None:intergenic | 40.0% | |
| AATGTGATTACTTGGCGTCT+TGG | + | chr2_2:6484709-6484728 | None:intergenic | 40.0% | |
| !!! | GCTCTTCTTTAGGGTTGTTT+TGG | + | chr2_2:6484750-6484769 | None:intergenic | 40.0% |
| ! | AGGAATGTTCTAATTGGCCT+TGG | - | chr2_2:6484802-6484821 | Msa0234020:CDS | 40.0% |
| !! | AATGTTCTAATTGGCCTTGG+AGG | - | chr2_2:6484805-6484824 | Msa0234020:CDS | 40.0% |
| !! | TTGTTTGGTGTTGCACCTAA+GGG | + | chr2_2:6484919-6484938 | None:intergenic | 40.0% |
| !! | ATTGTTTGGTGTTGCACCTA+AGG | + | chr2_2:6484920-6484939 | None:intergenic | 40.0% |
| GTAAGGCTTTCATGAGTTCA+AGG | + | chr2_2:6485071-6485090 | None:intergenic | 40.0% | |
| TACAAAACTACGTGGATCAC+TGG | + | chr2_2:6485097-6485116 | None:intergenic | 40.0% | |
| !! | GCTTGTTGTACAAAACTACG+TGG | + | chr2_2:6485105-6485124 | None:intergenic | 40.0% |
| CACCATCACAATAAGCACAA+TGG | + | chr2_2:6485134-6485153 | None:intergenic | 40.0% | |
| GATGGTGCATATTCTCAAGT+TGG | - | chr2_2:6485147-6485166 | Msa0234020:CDS | 40.0% | |
| CAAAATGGCAAAGCAAAGGT+TGG | + | chr2_2:6485279-6485298 | None:intergenic | 40.0% | |
| !! | CAACCTTTGCTTTGCCATTT+TGG | - | chr2_2:6485277-6485296 | Msa0234020:CDS | 40.0% |
| GTTCCAAAATGGCAAAGCAA+AGG | + | chr2_2:6485283-6485302 | None:intergenic | 40.0% | |
| GTAAAGAGGTGATGTACTGT+CGG | + | chr2_2:6485346-6485365 | None:intergenic | 40.0% | |
| TCCATAGAGAATGTTCCACA+TGG | - | chr2_2:6485570-6485589 | Msa0234020:CDS | 40.0% | |
| TCCATGTGGAACATTCTCTA+TGG | + | chr2_2:6485574-6485593 | None:intergenic | 40.0% | |
| GTGCAAGTGAGATTAACTCA+AGG | - | chr2_2:6485973-6485992 | Msa0234020:CDS | 40.0% | |
| GAGTTATGTTACGTGTCCAT+TGG | - | chr2_2:6485995-6486014 | Msa0234020:CDS | 40.0% | |
| !!! | TGTTACGTGTCCATTGGTTT+TGG | - | chr2_2:6486001-6486020 | Msa0234020:CDS | 40.0% |
| TGAAGAGGCCAAAGAAATCA+AGG | - | chr2_2:6486045-6486064 | Msa0234020:CDS | 40.0% | |
| CAAGAAGGAGAAAGAAGAAG+AGG | - | chr2_2:6486070-6486089 | Msa0234020:CDS | 40.0% | |
| CCAGCAAACTCCGTATTAAT+TGG | + | chr2_2:6486191-6486210 | None:intergenic | 40.0% | |
| CCAATTAATACGGAGTTTGC+TGG | - | chr2_2:6486188-6486207 | Msa0234020:CDS | 40.0% | |
| TTGTGATCATGGGAAGAATG+AGG | + | chr2_2:6486230-6486249 | None:intergenic | 40.0% | |
| !! | GGTTGGATTAACGGATTTGT+TGG | - | chr2_2:6486277-6486296 | Msa0234020:CDS | 40.0% |
| TGAGGATGATGATAGCATTG+TGG | - | chr2_2:6486313-6486332 | Msa0234020:CDS | 40.0% | |
| ! | TTGTGGTTACTTTGGTTCCA+AGG | - | chr2_2:6486330-6486349 | Msa0234020:CDS | 40.0% |
| ! | GTTACTTTGGTTCCAAGGTA+TGG | - | chr2_2:6486335-6486354 | Msa0234020:CDS | 40.0% |
| ACAATTCCTTTCCCATACCT+TGG | + | chr2_2:6486350-6486369 | None:intergenic | 40.0% | |
| CGCCAAGTAATCACATTCAG+TGG | - | chr2_2:6484712-6484731 | Msa0234020:CDS | 45.0% | |
| AAGTACCACAAAGTCCTCCA+AGG | + | chr2_2:6484822-6484841 | None:intergenic | 45.0% | |
| TTGGAGAAGCTAGGGCAAAA+GGG | + | chr2_2:6484855-6484874 | None:intergenic | 45.0% | |
| ATTGGAGAAGCTAGGGCAAA+AGG | + | chr2_2:6484856-6484875 | None:intergenic | 45.0% | |
| AGGGGAAATTGGAGAAGCTA+GGG | + | chr2_2:6484863-6484882 | None:intergenic | 45.0% | |
| GCTGCTTGTCTTACCCTTAA+GGG | + | chr2_2:6485006-6485025 | None:intergenic | 45.0% | |
| ! | TGCTGCTTGTCTTACCCTTA+AGG | + | chr2_2:6485007-6485026 | None:intergenic | 45.0% |
| AAACTACGTGGATCACTGGA+TGG | + | chr2_2:6485093-6485112 | None:intergenic | 45.0% | |
| GGAGAGTCGTAGTTCCAAAA+TGG | + | chr2_2:6485294-6485313 | None:intergenic | 45.0% | |
| TGGAACTACGACTCTCCTAA+TGG | - | chr2_2:6485297-6485316 | Msa0234020:CDS | 45.0% | |
| TGATGTACTGTCGGCGTAAA+TGG | + | chr2_2:6485337-6485356 | None:intergenic | 45.0% | |
| GTTCGGAGTTTGTCGTAAAG+AGG | + | chr2_2:6485360-6485379 | None:intergenic | 45.0% | |
| !! | TGTTGGAGGTTGATGACTAG+CGG | + | chr2_2:6485382-6485401 | None:intergenic | 45.0% |
| CATCTATGAACTGGTCCATG+TGG | + | chr2_2:6485588-6485607 | None:intergenic | 45.0% | |
| CACATGGACCAGTTCATAGA+TGG | - | chr2_2:6485586-6485605 | Msa0234020:CDS | 45.0% | |
| TCACCACTCCATCTATGAAC+TGG | + | chr2_2:6485597-6485616 | None:intergenic | 45.0% | |
| GGAGAAAGAAGAAGAGGAAG+AGG | - | chr2_2:6486076-6486095 | Msa0234020:CDS | 45.0% | |
| GTTGGAAGATTTAGGAGCTG+AGG | - | chr2_2:6486295-6486314 | Msa0234020:CDS | 45.0% | |
| TTGGTTCCAAGGTATGGGAA+AGG | - | chr2_2:6486341-6486360 | Msa0234020:CDS | 45.0% | |
| CGCCAAGTAATCACATTCAG+TGG | - | chr2_2:6484712-6484731 | Msa0234020:CDS | 45.0% | |
| AAGTACCACAAAGTCCTCCA+AGG | + | chr2_2:6484822-6484841 | None:intergenic | 45.0% | |
| TTGGAGAAGCTAGGGCAAAA+GGG | + | chr2_2:6484855-6484874 | None:intergenic | 45.0% | |
| ATTGGAGAAGCTAGGGCAAA+AGG | + | chr2_2:6484856-6484875 | None:intergenic | 45.0% | |
| AGGGGAAATTGGAGAAGCTA+GGG | + | chr2_2:6484863-6484882 | None:intergenic | 45.0% | |
| GCTGCTTGTCTTACCCTTAA+GGG | + | chr2_2:6485006-6485025 | None:intergenic | 45.0% | |
| ! | TGCTGCTTGTCTTACCCTTA+AGG | + | chr2_2:6485007-6485026 | None:intergenic | 45.0% |
| AAACTACGTGGATCACTGGA+TGG | + | chr2_2:6485093-6485112 | None:intergenic | 45.0% | |
| GGAGAGTCGTAGTTCCAAAA+TGG | + | chr2_2:6485294-6485313 | None:intergenic | 45.0% | |
| TGGAACTACGACTCTCCTAA+TGG | - | chr2_2:6485297-6485316 | Msa0234020:CDS | 45.0% | |
| TGATGTACTGTCGGCGTAAA+TGG | + | chr2_2:6485337-6485356 | None:intergenic | 45.0% | |
| GTTCGGAGTTTGTCGTAAAG+AGG | + | chr2_2:6485360-6485379 | None:intergenic | 45.0% | |
| !! | TGTTGGAGGTTGATGACTAG+CGG | + | chr2_2:6485382-6485401 | None:intergenic | 45.0% |
| CATCTATGAACTGGTCCATG+TGG | + | chr2_2:6485588-6485607 | None:intergenic | 45.0% | |
| CACATGGACCAGTTCATAGA+TGG | - | chr2_2:6485586-6485605 | Msa0234020:CDS | 45.0% | |
| TCACCACTCCATCTATGAAC+TGG | + | chr2_2:6485597-6485616 | None:intergenic | 45.0% | |
| GGAGAAAGAAGAAGAGGAAG+AGG | - | chr2_2:6486076-6486095 | Msa0234020:CDS | 45.0% | |
| GTTGGAAGATTTAGGAGCTG+AGG | - | chr2_2:6486295-6486314 | Msa0234020:CDS | 45.0% | |
| TTGGTTCCAAGGTATGGGAA+AGG | - | chr2_2:6486341-6486360 | Msa0234020:CDS | 45.0% | |
| !! | ATTGGCCTTGGAGGACTTTG+TGG | - | chr2_2:6484814-6484833 | Msa0234020:CDS | 50.0% |
| AGCTAGGGCAAAAGGGTTAG+TGG | + | chr2_2:6484848-6484867 | None:intergenic | 50.0% | |
| GAGGGGAAATTGGAGAAGCT+AGG | + | chr2_2:6484864-6484883 | None:intergenic | 50.0% | |
| TGGACCACATGTGGAAAGGT+CGG | + | chr2_2:6484887-6484906 | None:intergenic | 50.0% | |
| GTTGCACCTAAGGGTAGATC+CGG | + | chr2_2:6484910-6484929 | None:intergenic | 50.0% | |
| ACGTGGATCACTGGATGGTA+AGG | + | chr2_2:6485088-6485107 | None:intergenic | 50.0% | |
| GAGGGAAGTTGCATGCCATT+AGG | + | chr2_2:6485315-6485334 | None:intergenic | 50.0% | |
| GTACTGTCGGCGTAAATGGA+GGG | + | chr2_2:6485333-6485352 | None:intergenic | 50.0% | |
| TGTACTGTCGGCGTAAATGG+AGG | + | chr2_2:6485334-6485353 | None:intergenic | 50.0% | |
| !! | GAGGTTGATGACTAGCGGTT+CGG | + | chr2_2:6485377-6485396 | None:intergenic | 50.0% |
| TATGGATCCAGCACCAGGAT+CGG | + | chr2_2:6485556-6485575 | None:intergenic | 50.0% | |
| TTCTCTATGGATCCAGCACC+AGG | + | chr2_2:6485561-6485580 | None:intergenic | 50.0% | |
| GGACCAGTTCATAGATGGAG+TGG | - | chr2_2:6485591-6485610 | Msa0234020:CDS | 50.0% | |
| !! | ATTGGCCTTGGAGGACTTTG+TGG | - | chr2_2:6484814-6484833 | Msa0234020:CDS | 50.0% |
| AGCTAGGGCAAAAGGGTTAG+TGG | + | chr2_2:6484848-6484867 | None:intergenic | 50.0% | |
| GAGGGGAAATTGGAGAAGCT+AGG | + | chr2_2:6484864-6484883 | None:intergenic | 50.0% | |
| TGGACCACATGTGGAAAGGT+CGG | + | chr2_2:6484887-6484906 | None:intergenic | 50.0% | |
| GTTGCACCTAAGGGTAGATC+CGG | + | chr2_2:6484910-6484929 | None:intergenic | 50.0% | |
| ACGTGGATCACTGGATGGTA+AGG | + | chr2_2:6485088-6485107 | None:intergenic | 50.0% | |
| GAGGGAAGTTGCATGCCATT+AGG | + | chr2_2:6485315-6485334 | None:intergenic | 50.0% | |
| GTACTGTCGGCGTAAATGGA+GGG | + | chr2_2:6485333-6485352 | None:intergenic | 50.0% | |
| TGTACTGTCGGCGTAAATGG+AGG | + | chr2_2:6485334-6485353 | None:intergenic | 50.0% | |
| !! | GAGGTTGATGACTAGCGGTT+CGG | + | chr2_2:6485377-6485396 | None:intergenic | 50.0% |
| TATGGATCCAGCACCAGGAT+CGG | + | chr2_2:6485556-6485575 | None:intergenic | 50.0% | |
| TTCTCTATGGATCCAGCACC+AGG | + | chr2_2:6485561-6485580 | None:intergenic | 50.0% | |
| GGACCAGTTCATAGATGGAG+TGG | - | chr2_2:6485591-6485610 | Msa0234020:CDS | 50.0% | |
| GAAAGGTCGGGAGGGGAAAT+TGG | + | chr2_2:6484874-6484893 | None:intergenic | 55.0% | |
| ACATGTGGAAAGGTCGGGAG+GGG | + | chr2_2:6484881-6484900 | None:intergenic | 55.0% | |
| CACATGTGGAAAGGTCGGGA+GGG | + | chr2_2:6484882-6484901 | None:intergenic | 55.0% | |
| GGACCACATGTGGAAAGGTC+GGG | + | chr2_2:6484886-6484905 | None:intergenic | 55.0% | |
| CCTTTCCACATGTGGTCCAC+CGG | - | chr2_2:6484888-6484907 | Msa0234020:CDS | 55.0% | |
| TAGATCCGGTGGACCACATG+TGG | + | chr2_2:6484896-6484915 | None:intergenic | 55.0% | |
| CTCGGAAGCTCTTATCGTGC+CGG | - | chr2_2:6485522-6485541 | Msa0234020:CDS | 55.0% | |
| ACCAGGATCGGGTTCATCAC+CGG | + | chr2_2:6485544-6485563 | None:intergenic | 55.0% | |
| ATGGATCCAGCACCAGGATC+GGG | + | chr2_2:6485555-6485574 | None:intergenic | 55.0% | |
| GAAAGGTCGGGAGGGGAAAT+TGG | + | chr2_2:6484874-6484893 | None:intergenic | 55.0% | |
| ACATGTGGAAAGGTCGGGAG+GGG | + | chr2_2:6484881-6484900 | None:intergenic | 55.0% | |
| CACATGTGGAAAGGTCGGGA+GGG | + | chr2_2:6484882-6484901 | None:intergenic | 55.0% | |
| GGACCACATGTGGAAAGGTC+GGG | + | chr2_2:6484886-6484905 | None:intergenic | 55.0% | |
| CCTTTCCACATGTGGTCCAC+CGG | - | chr2_2:6484888-6484907 | Msa0234020:CDS | 55.0% | |
| TAGATCCGGTGGACCACATG+TGG | + | chr2_2:6484896-6484915 | None:intergenic | 55.0% | |
| CTCGGAAGCTCTTATCGTGC+CGG | - | chr2_2:6485522-6485541 | Msa0234020:CDS | 55.0% | |
| ACCAGGATCGGGTTCATCAC+CGG | + | chr2_2:6485544-6485563 | None:intergenic | 55.0% | |
| ATGGATCCAGCACCAGGATC+GGG | + | chr2_2:6485555-6485574 | None:intergenic | 55.0% | |
| CCACATGTGGAAAGGTCGGG+AGG | + | chr2_2:6484883-6484902 | None:intergenic | 60.0% | |
| CCTCCCGACCTTTCCACATG+TGG | - | chr2_2:6484880-6484899 | Msa0234020:CDS | 60.0% | |
| CCGGTGGACCACATGTGGAA+AGG | + | chr2_2:6484891-6484910 | None:intergenic | 60.0% | |
| GGTCCACCGGATCTACCCTT+AGG | - | chr2_2:6484901-6484920 | Msa0234020:CDS | 60.0% | |
| GCACCTAAGGGTAGATCCGG+TGG | + | chr2_2:6484907-6484926 | None:intergenic | 60.0% | |
| CGGCACGATAAGAGCTTCCG+AGG | + | chr2_2:6485524-6485543 | None:intergenic | 60.0% | |
| GATGAACCCGATCCTGGTGC+TGG | - | chr2_2:6485546-6485565 | Msa0234020:CDS | 60.0% | |
| CCACATGTGGAAAGGTCGGG+AGG | + | chr2_2:6484883-6484902 | None:intergenic | 60.0% | |
| CCTCCCGACCTTTCCACATG+TGG | - | chr2_2:6484880-6484899 | Msa0234020:CDS | 60.0% | |
| CCGGTGGACCACATGTGGAA+AGG | + | chr2_2:6484891-6484910 | None:intergenic | 60.0% | |
| GGTCCACCGGATCTACCCTT+AGG | - | chr2_2:6484901-6484920 | Msa0234020:CDS | 60.0% | |
| GCACCTAAGGGTAGATCCGG+TGG | + | chr2_2:6484907-6484926 | None:intergenic | 60.0% | |
| CGGCACGATAAGAGCTTCCG+AGG | + | chr2_2:6485524-6485543 | None:intergenic | 60.0% | |
| GATGAACCCGATCCTGGTGC+TGG | - | chr2_2:6485546-6485565 | Msa0234020:CDS | 60.0% | |
| GCCGGTGATGAACCCGATCC+TGG | - | chr2_2:6485540-6485559 | Msa0234020:CDS | 65.0% | |
| GCCGGTGATGAACCCGATCC+TGG | - | chr2_2:6485540-6485559 | Msa0234020:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 6484583 | 6486406 | 6484583 | ID=Msa0234020;Name=Msa0234020 |
| chr2_2 | mRNA | 6484583 | 6486406 | 6484583 | ID=Msa0234020-mRNA-1;Parent=Msa0234020;Name=Msa0234020-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|607 |
| chr2_2 | exon | 6484583 | 6486406 | 6484583 | ID=Msa0234020-mRNA-1:exon:2849;Parent=Msa0234020-mRNA-1 |
| chr2_2 | CDS | 6484583 | 6486406 | 6484583 | ID=Msa0234020-mRNA-1:cds;Parent=Msa0234020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
