AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0083550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0083550 MtrunA17_Chr1g0197391 94.737 570 10 1 22 571 1 570 0.0 1093
Msa0083550 MtrunA17_Chr4g0028411 42.259 549 282 8 45 567 3 542 6.30e-141 419
Msa0083550 MtrunA17_Chr1g0157401 43.659 552 270 10 43 560 9 553 2.61e-140 418
Msa0083550 MtrunA17_Chr2g0327341 39.305 547 300 7 44 567 2 539 1.78e-133 399
Msa0083550 MtrunA17_Chr4g0039791 43.986 557 260 13 48 571 24 561 1.66e-131 395
Msa0083550 MtrunA17_Chr5g0409771 43.199 544 265 13 46 559 18 547 4.16e-131 394
Msa0083550 MtrunA17_Chr5g0409791 42.315 553 265 12 48 559 21 560 3.00e-126 382
Msa0083550 MtrunA17_Chr3g0116271 43.825 502 242 8 88 560 61 551 1.24e-123 375
Msa0083550 MtrunA17_Chr1g0180541 41.445 526 272 11 66 560 21 541 8.28e-122 370
Msa0083550 MtrunA17_Chr8g0353341 43.462 520 259 14 33 531 2 507 4.08e-120 365
Msa0083550 MtrunA17_Chr3g0116251 42.455 497 253 9 88 560 62 549 1.10e-116 357
Msa0083550 MtrunA17_Chr1g0180551 40.406 542 280 10 66 571 90 624 3.38e-115 355
Msa0083550 MtrunA17_Chr1g0186071 39.444 540 293 9 42 560 23 549 2.17e-105 328
Msa0083550 MtrunA17_Chr3g0102411 36.873 518 292 7 67 557 22 531 5.38e-105 327
Msa0083550 MtrunA17_Chr4g0072561 37.687 536 289 10 66 568 26 549 4.35e-98 309
Msa0083550 MtrunA17_Chr5g0395431 37.673 507 274 8 87 559 81 579 2.11e-92 295
Msa0083550 MtrunA17_Chr4g0000461 37.952 498 277 6 91 559 40 534 2.24e-92 293
Msa0083550 MtrunA17_Chr2g0334131 45.324 278 125 3 307 559 1 276 3.56e-71 230
Msa0083550 MtrunA17_Chr1g0157431 39.714 350 191 7 43 378 9 352 9.81e-65 220
Msa0083550 MtrunA17_Chr6g0471921 29.652 489 294 18 104 557 32 505 9.79e-32 129
Msa0083550 MtrunA17_Chr5g0433241 27.043 514 296 16 105 556 41 537 3.72e-31 127
Msa0083550 MtrunA17_Chr2g0301671 27.532 385 223 11 230 571 192 563 8.95e-31 126
Msa0083550 MtrunA17_Chr8g0370701 24.854 515 316 15 105 564 83 581 2.10e-30 125
Msa0083550 MtrunA17_Chr3g0109731 25.472 530 316 17 103 569 43 556 1.69e-28 120
Msa0083550 MtrunA17_Chr5g0433231 25.901 444 274 12 126 530 61 488 1.29e-26 114
Msa0083550 MtrunA17_Chr4g0068151 28.481 316 202 9 230 530 192 498 1.35e-26 114
Msa0083550 MtrunA17_Chr5g0396311 26.419 458 291 12 105 530 41 484 1.43e-26 114
Msa0083550 MtrunA17_Chr2g0292471 27.389 471 270 16 101 519 25 475 1.46e-26 114
Msa0083550 MtrunA17_Chr8g0370731 25.581 430 279 11 132 530 20 439 2.01e-24 107
Msa0083550 MtrunA17_Chr6g0471311 26.802 444 272 16 126 530 61 490 5.11e-24 106
Msa0083550 MtrunA17_Chr5g0396331 26.258 457 291 17 105 530 41 482 5.66e-24 105
Msa0083550 MtrunA17_Chr4g0028451 53.488 86 31 1 446 531 11 87 1.21e-22 93.2
Msa0083550 MtrunA17_Chr5g0433221 25.114 438 285 12 126 530 61 488 2.52e-21 97.8
Msa0083550 MtrunA17_Chr7g0270221 25.676 518 269 21 68 514 36 508 1.19e-18 89.7
Msa0083550 MtrunA17_Chr1g0194371 26.404 356 183 10 233 519 221 566 9.80e-18 87.0
Msa0083550 MtrunA17_Chr8g0388081 26.389 360 187 15 207 505 137 479 1.02e-17 86.7
Msa0083550 MtrunA17_Chr5g0406681 24.411 467 282 18 99 521 63 502 2.99e-17 85.1
Msa0083550 MtrunA17_Chr8g0377991 31.220 205 119 5 355 546 459 654 1.17e-14 77.4
Msa0083550 MtrunA17_Chr4g0004841 30.435 184 94 4 408 559 151 332 2.21e-14 74.7
Msa0083550 MtrunA17_Chr3g0121951 33.333 192 91 6 376 545 469 645 2.93e-14 75.9
Msa0083550 MtrunA17_Chr3g0121931 32.787 183 105 4 376 545 473 650 3.56e-14 75.9
Msa0083550 MtrunA17_Chr2g0329161 27.326 344 200 15 215 520 657 988 3.77e-14 76.3
Msa0083550 MtrunA17_Chr4g0004101 29.870 154 81 2 433 559 170 323 8.31e-14 72.8
Msa0083550 MtrunA17_Chr2g0334121 31.319 182 104 5 80 250 36 207 1.66e-13 69.7
Msa0083550 MtrunA17_Chr1g0160041 30.247 162 101 6 356 509 426 583 6.66e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0083550 AT1G20510.1 43.796 548 271 9 39 560 1 537 1.13e-143 426
Msa0083550 AT4G05160.1 41.924 551 283 7 45 567 3 544 1.26e-136 408
Msa0083550 AT1G20500.1 41.912 544 273 10 49 560 11 543 1.44e-135 405
Msa0083550 AT4G19010.1 41.436 543 274 11 48 559 25 554 1.48e-128 388
Msa0083550 AT5G38120.1 41.360 544 275 10 49 560 12 543 2.16e-128 387
Msa0083550 AT1G20510.2 43.802 484 255 8 39 516 1 473 1.29e-123 372
Msa0083550 AT1G20480.1 41.016 551 276 13 43 559 22 557 2.67e-123 375
Msa0083550 AT5G63380.1 41.230 553 275 13 43 559 12 550 6.93e-123 374
Msa0083550 AT5G38120.3 41.296 494 266 9 49 530 12 493 6.65e-115 351
Msa0083550 AT1G20510.3 42.208 462 250 8 39 494 1 451 1.66e-110 338
Msa0083550 AT5G38120.4 40.625 480 261 9 49 516 12 479 9.24e-108 332
Msa0083550 AT5G38120.2 40.625 480 261 9 49 516 12 479 9.24e-108 332
Msa0083550 AT1G65060.1 39.877 489 263 6 99 559 71 556 7.79e-98 308
Msa0083550 AT1G62940.1 39.718 496 266 7 92 559 42 532 4.78e-97 306
Msa0083550 AT3G21240.1 37.402 508 267 9 91 559 51 546 5.89e-95 301
Msa0083550 AT3G21230.1 38.583 508 275 7 86 559 56 560 2.66e-92 295
Msa0083550 AT1G51680.1 37.600 500 274 8 95 559 57 553 4.33e-86 278
Msa0083550 AT3G21230.3 39.216 459 262 6 86 530 56 511 2.52e-84 273
Msa0083550 AT3G21240.2 37.838 444 245 8 91 515 51 482 1.69e-80 261
Msa0083550 AT3G21240.3 37.838 444 245 8 91 515 51 482 1.69e-80 261
Msa0083550 AT1G20490.2 37.355 431 243 10 49 464 11 429 5.66e-80 258
Msa0083550 AT1G20490.1 37.355 431 243 10 49 464 11 429 5.66e-80 258
Msa0083550 AT3G21230.2 39.326 445 253 6 85 515 55 496 6.24e-80 260
Msa0083550 AT1G51680.3 38.190 453 262 7 94 531 56 505 4.31e-78 256
Msa0083550 AT1G65060.2 38.916 406 237 5 99 496 71 473 2.28e-74 245
Msa0083550 AT1G51680.2 38.215 437 252 7 94 515 56 489 6.27e-73 241
Msa0083550 AT3G21230.4 35.121 373 225 6 86 444 56 425 1.31e-44 164
Msa0083550 AT1G30520.2 28.542 480 284 13 92 530 21 482 1.48e-37 146
Msa0083550 AT1G30520.1 28.542 480 284 13 92 530 21 482 1.48e-37 146
Msa0083550 AT1G65880.1 27.372 548 306 17 103 570 32 567 6.97e-35 139
Msa0083550 AT3G48990.1 29.652 489 296 15 103 557 30 504 1.59e-34 137
Msa0083550 AT1G21540.1 26.886 517 304 16 100 556 37 539 3.31e-33 134
Msa0083550 AT1G65890.1 26.465 529 305 16 103 559 32 548 4.90e-32 130
Msa0083550 AT1G77240.1 25.919 517 309 16 98 556 34 534 2.38e-30 125
Msa0083550 AT1G30520.3 27.115 461 274 14 92 511 21 460 5.85e-30 123
Msa0083550 AT1G30520.4 27.115 461 274 14 92 511 21 460 5.85e-30 123
Msa0083550 AT1G21530.2 25.577 520 306 17 99 556 38 538 9.65e-30 124
Msa0083550 AT1G21530.1 25.813 523 299 18 99 556 38 536 2.45e-29 122
Msa0083550 AT1G66120.1 26.960 523 303 18 103 559 32 541 4.13e-29 122
Msa0083550 AT5G16370.1 24.902 510 318 15 100 556 37 534 3.80e-28 119
Msa0083550 AT1G20560.1 25.670 522 317 16 105 571 43 548 5.33e-28 118
Msa0083550 AT1G75960.1 25.490 510 311 13 105 559 42 537 2.61e-26 113
Msa0083550 AT5G16340.1 24.165 509 323 14 100 556 37 534 2.08e-25 110
Msa0083550 AT3G16910.1 28.931 318 198 11 230 530 195 501 3.14e-25 110
Msa0083550 AT3G16170.1 25.858 379 216 10 233 559 235 600 3.05e-24 107
Msa0083550 AT1G20560.2 25.333 375 236 10 230 571 107 470 8.36e-24 105
Msa0083550 AT1G76290.1 24.632 475 302 16 94 530 23 479 6.34e-22 100
Msa0083550 AT2G17650.1 25.000 472 293 13 105 530 88 544 4.96e-21 97.4
Msa0083550 AT5G27600.1 25.160 469 263 20 104 502 119 569 1.65e-19 93.2
Msa0083550 AT1G68270.1 24.719 534 278 21 103 559 32 518 4.64e-19 91.3
Msa0083550 AT3G05970.1 27.900 319 170 10 233 502 262 569 5.12e-18 88.2
Msa0083550 AT1G49430.1 26.761 355 190 14 217 514 210 551 9.64e-18 87.4
Msa0083550 AT2G47240.4 27.679 336 180 13 233 514 162 488 2.31e-16 82.8
Msa0083550 AT2G47240.1 27.679 336 180 13 233 514 221 547 2.81e-16 82.8
Msa0083550 AT2G47240.2 27.679 336 180 13 233 514 221 547 2.81e-16 82.8
Msa0083550 AT2G47240.3 27.679 336 180 13 233 514 221 547 2.81e-16 82.8
Msa0083550 AT1G77590.2 24.566 346 192 11 232 514 99 438 8.28e-16 80.9
Msa0083550 AT1G77590.1 24.566 346 192 11 232 514 245 584 1.17e-15 80.9
Msa0083550 AT2G04350.2 25.000 344 177 14 231 505 273 604 2.42e-15 79.7
Msa0083550 AT2G04350.1 25.000 344 177 14 231 505 273 604 2.42e-15 79.7

Find 137 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCCTTCTCACTTTCTTATA+TGG 0.212821 1_2:+62649618 None:intergenic
ATCAGCTTTCCACATGCTTC+TGG 0.219682 1_2:+62650659 None:intergenic
AAATAAAGCTATGGTGTAAT+TGG 0.225021 1_2:-62649371 Msa0083550:three_prime_UTR
GAATGGTAAATTCCTGTTCT+TGG 0.248189 1_2:+62651721 None:intergenic
GGACTGATGTTCTTTGGATT+TGG 0.249654 1_2:-62651004 Msa0083550:CDS
GTTGAGTACAAGATTGAGTT+TGG 0.273727 1_2:+62651460 None:intergenic
TAACTGCTGCATCAACAATA+AGG 0.276654 1_2:+62650190 None:intergenic
GCCGCTATACTTTACTCTTC+AGG 0.280862 1_2:-62651166 Msa0083550:CDS
CCAGCAGAGCAGTTTCATTA+TGG 0.284701 1_2:+62651093 None:intergenic
GTCTACGGACTGATGTTCTT+TGG 0.292241 1_2:-62651010 Msa0083550:CDS
ACCAATTTGTGTAACTCTTC+TGG 0.296211 1_2:+62651319 None:intergenic
CTTTGTTGGGATTTCATGTT+TGG 0.301287 1_2:+62651681 None:intergenic
CTCTGTCTCCATTTGATAAC+AGG 0.330041 1_2:-62651756 Msa0083550:CDS
CACCATAGCTTTATTTCTTT+AGG 0.341674 1_2:+62649378 None:intergenic
AATCAAGCACAAAGGGTATC+AGG 0.343261 1_2:-62650411 Msa0083550:intron
GACTGATGTTCTTTGGATTT+GGG 0.346334 1_2:-62651003 Msa0083550:CDS
AAATGTCAGGAGAGGAGATT+TGG 0.351734 1_2:-62651807 Msa0083550:CDS
CTACATAGTTGAACGAATAA+AGG 0.367598 1_2:-62650438 Msa0083550:CDS
AACTGCTGCATCAACAATAA+GGG 0.374049 1_2:+62650191 None:intergenic
CTTGCAACAGCTTTGTTCCA+TGG 0.383330 1_2:-62651523 Msa0083550:CDS
TCAGGTAGCTCCTGCAGAAC+TGG 0.384556 1_2:-62650235 Msa0083550:intron
ACCAGAAGAGTTACACAAAT+TGG 0.386896 1_2:-62651320 Msa0083550:CDS
TCAGTTGAAGAGTTAATAGA+AGG 0.392562 1_2:-62651241 Msa0083550:CDS
GCGAAGCAAGTACATGATTC+AGG 0.393921 1_2:-62651364 Msa0083550:CDS
AAAGTGGTAGACATTGAAAC+AGG 0.394796 1_2:-62650620 Msa0083550:CDS
AGGGTTGAAGATGAAGAAAC+TGG 0.395025 1_2:-62650087 Msa0083550:CDS
CACCTGAGCCAACCCTTCTT+AGG 0.395579 1_2:+62650819 None:intergenic
CTTTACTCTTCAGGGACTAC+TGG 0.405377 1_2:-62651157 Msa0083550:CDS
TATTTCCTTGGGTTGAACTA+AGG 0.410515 1_2:-62650754 Msa0083550:CDS
GTTCAGAAAGCTATTTCCTT+GGG 0.412932 1_2:-62650765 Msa0083550:CDS
TGTTGAGATCTGGCTTTGTT+GGG 0.419272 1_2:+62651668 None:intergenic
CCGCTATACTTTACTCTTCA+GGG 0.425254 1_2:-62651165 Msa0083550:CDS
GTTGAACTAAGGGCGGGTTA+TGG 0.435071 1_2:-62650743 Msa0083550:CDS
CCATAATGAAACTGCTCTGC+TGG 0.435438 1_2:-62651093 Msa0083550:CDS
GTTCCTACAATTCTCACCTC+TGG 0.439013 1_2:-62651286 Msa0083550:CDS
GTGTTGAGATCTGGCTTTGT+TGG 0.439500 1_2:+62651667 None:intergenic
GGATTTGGGTTGTTGTGTGT+TGG 0.451406 1_2:-62650989 Msa0083550:CDS
AGACAATGTCAGTAAAACTT+TGG 0.451778 1_2:-62649287 Msa0083550:three_prime_UTR
TTTCTAAGTTGTGAGTAACT+TGG 0.452000 1_2:-62649512 Msa0083550:exon
TTTCAAGCTTAACAAGAGAA+TGG 0.452313 1_2:+62651704 None:intergenic
TTCACCAATGAGTGGATAAC+TGG 0.452438 1_2:+62650875 None:intergenic
GCTATTATGAAAGAATATCT+AGG 0.453902 1_2:-62650548 Msa0083550:CDS
AGCGGTTACGATCCAAGAAC+AGG 0.454437 1_2:-62651733 Msa0083550:CDS
GTGATTTGTCTAGCCTAAGA+AGG 0.457731 1_2:-62650832 Msa0083550:CDS
AGCACAGATTCCAGTTCTGC+AGG 0.460066 1_2:+62650225 None:intergenic
ATTCCAATGTTTCATGTCTA+CGG 0.461630 1_2:-62651025 Msa0083550:CDS
TGGATAACTGGTGGCACTGC+TGG 0.462633 1_2:+62650887 None:intergenic
AGAGTTGCAGTGTTGAGATC+TGG 0.462977 1_2:+62651658 None:intergenic
CTCACCTCTGGGACATCTGA+TGG 0.463000 1_2:-62651274 Msa0083550:CDS
GTCCCAGAGGTGAGAATTGT+AGG 0.467301 1_2:+62651283 None:intergenic
CATGGACTTGAGATTAGAAA+AGG 0.469403 1_2:-62651505 Msa0083550:CDS
TTACACAAATTGGTCCCAAC+TGG 0.471916 1_2:-62651310 Msa0083550:CDS
CAACAATTGATTCAGAAGGT+TGG 0.475182 1_2:-62650505 Msa0083550:CDS
TAACCGCTCCTGTTATCAAA+TGG 0.478928 1_2:+62651748 None:intergenic
TTCTAAGTTGTGAGTAACTT+GGG 0.479667 1_2:-62649511 Msa0083550:exon
TGGTTGAGGACAGGTGATCT+TGG 0.485306 1_2:-62650485 Msa0083550:CDS
AGTTCAGAAAGCTATTTCCT+TGG 0.490058 1_2:-62650766 Msa0083550:CDS
AGGTGCTGCACCTTTGAGTA+AGG 0.492711 1_2:-62650801 Msa0083550:CDS
ATTTCCTTGGGTTGAACTAA+GGG 0.492805 1_2:-62650753 Msa0083550:CDS
CCTTCCTTGAGTGGAGGCAA+AGG 0.493651 1_2:+62650593 None:intergenic
CTTGGTTATATCGATGAGAA+TGG 0.496399 1_2:-62650467 Msa0083550:CDS
TTCACCAGATTCTTCTTCAA+CGG 0.499514 1_2:+62651780 None:intergenic
ATGGACTAACAGAAAGTTGT+GGG 0.505501 1_2:-62650724 Msa0083550:CDS
GACATGAAACATTGGAATGA+AGG 0.507443 1_2:+62651030 None:intergenic
AGCCTAAGAAGGGTTGGCTC+AGG 0.509742 1_2:-62650821 Msa0083550:CDS
AGGAGCTAATCAAGCACAAA+GGG 0.511589 1_2:-62650418 Msa0083550:CDS
CATCAGCAAGATCTCCTTGT+GGG 0.511833 1_2:+62651620 None:intergenic
TGACTTAGTATTGAGAGGGT+TGG 0.511924 1_2:+62651393 None:intergenic
CACTCAAGGAAGGAGAGTTA+TGG 0.515549 1_2:-62650583 Msa0083550:CDS
TCATCCGTTGAAGAAGAATC+TGG 0.516179 1_2:-62651784 Msa0083550:CDS
GCCACCAGTTATCCACTCAT+TGG 0.516190 1_2:-62650879 Msa0083550:CDS
TGTTTAGCTGTGTTATCAGT+TGG 0.521525 1_2:-62651433 Msa0083550:CDS
GTGAAACATGCTAGCAAAGA+TGG 0.522574 1_2:-62650857 Msa0083550:CDS
TTGATTCAGAAGGTTGGTTG+AGG 0.524384 1_2:-62650499 Msa0083550:CDS
TCAGAAGGTTGGTTGAGGAC+AGG 0.530736 1_2:-62650494 Msa0083550:CDS
GAAGCCTTTGCCTCCACTCA+AGG 0.535824 1_2:-62650597 Msa0083550:CDS
ATCTTGCCAGCAGCTGACCT+TGG 0.539481 1_2:+62649576 None:intergenic
TTCCTACAATTCTCACCTCT+GGG 0.539856 1_2:-62651285 Msa0083550:CDS
TTTCTGACTTAGTATTGAGA+GGG 0.544569 1_2:+62651389 None:intergenic
ACTAATCATAGTGTAACTTA+CGG 0.545558 1_2:-62651571 Msa0083550:CDS
CATGGAACAAAGCTGTTGCA+AGG 0.549110 1_2:+62651524 None:intergenic
CCTTGGGTTGAACTAAGGGC+GGG 0.553742 1_2:-62650749 Msa0083550:CDS
TCCTTGGGTTGAACTAAGGG+CGG 0.554693 1_2:-62650750 Msa0083550:CDS
AGAATTGTAGGAACTCCAGT+TGG 0.555282 1_2:+62651295 None:intergenic
CATAACTCTCCTTCCTTGAG+TGG 0.558671 1_2:+62650584 None:intergenic
TTTGAGTAAGGAAATGTCAC+TGG 0.559342 1_2:-62650789 Msa0083550:CDS
TGGTTTAGTATAAACTGAGT+TGG 0.560230 1_2:-62649267 Msa0083550:three_prime_UTR
AGCCTAAAGAAATAAAGCTA+TGG 0.561824 1_2:-62649380 Msa0083550:three_prime_UTR
ATACTTGACGTTCTCTACAT+AGG 0.562565 1_2:+62652067 None:intergenic
TTGTCTAGCCTAAGAAGGGT+TGG 0.570054 1_2:-62650827 Msa0083550:CDS
GAATTGTAGGAACTCCAGTT+GGG 0.571691 1_2:+62651296 None:intergenic
AGAATATCTAGGAAATATTG+AGG 0.571721 1_2:-62650537 Msa0083550:CDS
CTCACAACTTAGAAACAAGC+TGG 0.574328 1_2:+62649520 None:intergenic
AGAAGCCGCCTTATATCAGA+AGG 0.579500 1_2:-62649421 Msa0083550:three_prime_UTR
ATTTCTGACTTAGTATTGAG+AGG 0.580354 1_2:+62651388 None:intergenic
CCTTTGCCTCCACTCAAGGA+AGG 0.582843 1_2:-62650593 Msa0083550:CDS
AGTATACCAAGGTCAGCTGC+TGG 0.586618 1_2:-62649582 Msa0083550:CDS
TGATTTGTCTAGCCTAAGAA+GGG 0.587869 1_2:-62650831 Msa0083550:CDS
TCCATATAAGAAAGTGAGAA+GGG 0.594862 1_2:-62649619 Msa0083550:CDS
CTCCATATAAGAAAGTGAGA+AGG 0.595321 1_2:-62649620 Msa0083550:CDS
ACTGCAACAATTGATTCAGA+AGG 0.598082 1_2:-62650509 Msa0083550:CDS
AGTATTGAGAGGGTTGGCTG+TGG 0.599920 1_2:+62651399 None:intergenic
ACTGCTGCATCAACAATAAG+GGG 0.600356 1_2:+62650192 None:intergenic
AGTGACATTTCCTTACTCAA+AGG 0.602475 1_2:+62650791 None:intergenic
AACTCTCCTTCCTTGAGTGG+AGG 0.608300 1_2:+62650587 None:intergenic
GCCCTCACCACATATGCCAT+CGG 0.612252 1_2:+62650057 None:intergenic
AAGGAGCTAATCAAGCACAA+AGG 0.617428 1_2:-62650419 Msa0083550:CDS
TTACCCCTTCTGATATAAGG+CGG 0.622594 1_2:+62649416 None:intergenic
ATGGAACAAAGCTGTTGCAA+GGG 0.623142 1_2:+62651525 None:intergenic
GCAGATACCGATGGCATATG+TGG 0.627110 1_2:-62650064 Msa0083550:intron
AGTCCGTAGACATGAAACAT+TGG 0.627449 1_2:+62651022 None:intergenic
CCCGCCCTTAGTTCAACCCA+AGG 0.635164 1_2:+62650749 None:intergenic
GGGACTACTGGAGTAAGCAA+AGG 0.641617 1_2:-62651145 Msa0083550:CDS
AGAGTTGCCACATGTTCATG+TGG 0.646575 1_2:-62651203 Msa0083550:CDS
GTGCTATCACAGTTCCCACA+AGG 0.647014 1_2:-62651634 Msa0083550:CDS
CCCTGAAGAGTAAAGTATAG+CGG 0.649066 1_2:+62651165 None:intergenic
ACCAATGAGTGGATAACTGG+TGG 0.649415 1_2:+62650878 None:intergenic
GGGTTGAAGATGAAGAAACT+GGG 0.650548 1_2:-62650086 Msa0083550:CDS
TCTCCATTTGATAACAGGAG+CGG 0.650603 1_2:-62651751 Msa0083550:CDS
AAAGCTCATCCAGAAGCATG+TGG 0.657133 1_2:-62650668 Msa0083550:CDS
GAAACATTGGAATGAAGGCG+AGG 0.657962 1_2:+62651035 None:intergenic
AAGCCGCCTTATATCAGAAG+GGG 0.658392 1_2:-62649419 Msa0083550:three_prime_UTR
GACGTTCTCTACATAGGCCA+AGG 0.658544 1_2:+62652073 None:intergenic
TATGGACTAACAGAAAGTTG+TGG 0.659761 1_2:-62650725 Msa0083550:CDS
TAGCATGTTTCACCAATGAG+TGG 0.661752 1_2:+62650867 None:intergenic
CTTCTCGATAGCGACAAGCA+TGG 0.668123 1_2:+62650928 None:intergenic
GAAGCCGCCTTATATCAGAA+GGG 0.670001 1_2:-62649420 Msa0083550:three_prime_UTR
GCATCAGCAAGATCTCCTTG+TGG 0.671856 1_2:+62651619 None:intergenic
GGACTAACAGAAAGTTGTGG+GGG 0.674978 1_2:-62650722 Msa0083550:CDS
AGAAACTGGGCAGATACCGA+TGG 0.675828 1_2:-62650073 Msa0083550:CDS
GATTGCTCCACATGAACATG+TGG 0.679529 1_2:+62651196 None:intergenic
TGGACTAACAGAAAGTTGTG+GGG 0.694783 1_2:-62650723 Msa0083550:CDS
ATGAAGTGGAGTTCAAAGCG+AGG 0.696930 1_2:-62649444 Msa0083550:three_prime_UTR
GGAGAGTTATGGTTGAAAAG+CGG 0.697534 1_2:-62650572 Msa0083550:CDS
AGTAACTTGGGCATAAACGA+CGG 0.698899 1_2:-62649499 Msa0083550:three_prime_UTR
AAGTGGTAGACATTGAAACA+GGG 0.723354 1_2:-62650619 Msa0083550:CDS
CTTTCCATCAGATGTCCCAG+AGG 0.738092 1_2:+62651270 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTAACTTAAATAATC+AGG + chr1_2:62651500-62651519 None:intergenic 10.0%
!!! ATTTTTCAATTTATTTACCT+TGG - chr1_2:62649271-62649290 Msa0083550:three_prime_UTR 15.0%
!! AGTAAATTACTTTAATTCTA+AGG - chr1_2:62651044-62651063 Msa0083550:CDS 15.0%
!!! TTTGTATTTTAAACCTAATT+AGG + chr1_2:62651543-62651562 None:intergenic 15.0%
!!! AAATAAATTTGAGAATTTTC+AGG - chr1_2:62651715-62651734 Msa0083550:CDS 15.0%
!!! TTTTTTTTCAATTAATGAAG+TGG - chr1_2:62651903-62651922 Msa0083550:intron 15.0%
!! ATTGAAACTGAAACTATTTA+TGG + chr1_2:62650985-62651004 None:intergenic 20.0%
!! ATAAATAGTTTCAGTTTCAA+TGG - chr1_2:62650984-62651003 Msa0083550:CDS 20.0%
!!! AGTTTTCATTAATACATATG+TGG - chr1_2:62651093-62651112 Msa0083550:CDS 20.0%
!! ATGAAAATAAGAGTGAAAAT+AGG + chr1_2:62651216-62651235 None:intergenic 20.0%
!! AGAGAAATTAAAATGACTAT+AGG + chr1_2:62651677-62651696 None:intergenic 20.0%
!! TTTTTGTCCTGAAATTTTTG+TGG + chr1_2:62649354-62649373 None:intergenic 25.0%
! TTAACTATGTCAGTTGTATA+AGG + chr1_2:62649394-62649413 None:intergenic 25.0%
!!! GATATTTTTCGTAAAGTACT+AGG + chr1_2:62649427-62649446 None:intergenic 25.0%
!! AACATATCTATCAATTTTGC+AGG - chr1_2:62649527-62649546 Msa0083550:CDS 25.0%
!! ACATATCTATCAATTTTGCA+GGG - chr1_2:62649528-62649547 Msa0083550:CDS 25.0%
! ACTAATCATAGTGTAACTTA+CGG - chr1_2:62649790-62649809 Msa0083550:intron 25.0%
! GCTATTATGAAAGAATATCT+AGG - chr1_2:62650813-62650832 Msa0083550:CDS 25.0%
! AGAATATCTAGGAAATATTG+AGG - chr1_2:62650824-62650843 Msa0083550:CDS 25.0%
! AAAATAAGAGTGAAAATAGG+CGG + chr1_2:62651213-62651232 None:intergenic 25.0%
!!! TTATTTTACTGCATGAAATC+AGG + chr1_2:62651399-62651418 None:intergenic 25.0%
!!! TAAATTTGAGAATTTTCAGG+TGG - chr1_2:62651718-62651737 Msa0083550:CDS 25.0%
! AAATAAAGCTATGGTGTAAT+TGG - chr1_2:62651990-62652009 Msa0083550:intron 25.0%
CAGCATCTATAGTATATACA+AGG + chr1_2:62649449-62649468 None:intergenic 30.0%
TTTCAAGCTTAACAAGAGAA+TGG + chr1_2:62649660-62649679 None:intergenic 30.0%
! TTTCTGACTTAGTATTGAGA+GGG + chr1_2:62649975-62649994 None:intergenic 30.0%
! ATTTCTGACTTAGTATTGAG+AGG + chr1_2:62649976-62649995 None:intergenic 30.0%
TCAGTTGAAGAGTTAATAGA+AGG - chr1_2:62650120-62650139 Msa0083550:intron 30.0%
ATTCCAATGTTTCATGTCTA+CGG - chr1_2:62650336-62650355 Msa0083550:intron 30.0%
CTACATAGTTGAACGAATAA+AGG - chr1_2:62650923-62650942 Msa0083550:CDS 30.0%
! CTAAGGTATCAAATTGAGTT+TGG - chr1_2:62651061-62651080 Msa0083550:CDS 30.0%
GTATCAAATTGAGTTTGGAA+CGG - chr1_2:62651066-62651085 Msa0083550:CDS 30.0%
! TTGTAATCATTGTTGCTTAG+TGG - chr1_2:62651429-62651448 Msa0083550:CDS 30.0%
TATTCTGACTTCACCTAATT+AGG - chr1_2:62651527-62651546 Msa0083550:CDS 30.0%
ATTGTTGGATGAATGTCATA+TGG + chr1_2:62651579-62651598 None:intergenic 30.0%
AGTTATTGCATCTAGATTGT+TGG + chr1_2:62651594-62651613 None:intergenic 30.0%
TCCATATAAGAAAGTGAGAA+GGG - chr1_2:62651742-62651761 Msa0083550:CDS 30.0%
!! GTTTTATTGACAGTATACCA+AGG - chr1_2:62651768-62651787 Msa0083550:CDS 30.0%
TTTCTAAGTTGTGAGTAACT+TGG - chr1_2:62651849-62651868 Msa0083550:intron 30.0%
TTCTAAGTTGTGAGTAACTT+GGG - chr1_2:62651850-62651869 Msa0083550:intron 30.0%
! ATTTTACCCCTTCTGATATA+AGG + chr1_2:62651951-62651970 None:intergenic 30.0%
AGCCTAAAGAAATAAAGCTA+TGG - chr1_2:62651981-62652000 Msa0083550:intron 30.0%
!! CACCATAGCTTTATTTCTTT+AGG + chr1_2:62651986-62652005 None:intergenic 30.0%
AGACAATGTCAGTAAAACTT+TGG - chr1_2:62652074-62652093 Msa0083550:CDS 30.0%
TGGTTTAGTATAAACTGAGT+TGG - chr1_2:62652094-62652113 Msa0083550:CDS 30.0%
ATACTTGACGTTCTCTACAT+AGG + chr1_2:62649297-62649316 None:intergenic 35.0%
TTGTCAATGCTAATGTAGTG+TGG + chr1_2:62649500-62649519 None:intergenic 35.0%
! TTTTGCAGGGAAAAAATGTC+AGG - chr1_2:62649541-62649560 Msa0083550:CDS 35.0%
TTCACCAGATTCTTCTTCAA+CGG + chr1_2:62649584-62649603 None:intergenic 35.0%
GAATGGTAAATTCCTGTTCT+TGG + chr1_2:62649643-62649662 None:intergenic 35.0%
CTTTGTTGGGATTTCATGTT+TGG + chr1_2:62649683-62649702 None:intergenic 35.0%
! CTTTTCTAATCTCAAGTCCA+TGG + chr1_2:62649858-62649877 None:intergenic 35.0%
CATGGACTTGAGATTAGAAA+AGG - chr1_2:62649856-62649875 Msa0083550:intron 35.0%
GTTGAGTACAAGATTGAGTT+TGG + chr1_2:62649904-62649923 None:intergenic 35.0%
TGTTTAGCTGTGTTATCAGT+TGG - chr1_2:62649928-62649947 Msa0083550:intron 35.0%
ACCAGAAGAGTTACACAAAT+TGG - chr1_2:62650041-62650060 Msa0083550:intron 35.0%
ACCAATTTGTGTAACTCTTC+TGG + chr1_2:62650045-62650064 None:intergenic 35.0%
GACATGAAACATTGGAATGA+AGG + chr1_2:62650334-62650353 None:intergenic 35.0%
GACTGATGTTCTTTGGATTT+GGG - chr1_2:62650358-62650377 Msa0083550:intron 35.0%
! TGATTTGTCTAGCCTAAGAA+GGG - chr1_2:62650530-62650549 Msa0083550:CDS 35.0%
AGTGACATTTCCTTACTCAA+AGG + chr1_2:62650573-62650592 None:intergenic 35.0%
TTTGAGTAAGGAAATGTCAC+TGG - chr1_2:62650572-62650591 Msa0083550:CDS 35.0%
! AGTTCAGAAAGCTATTTCCT+TGG - chr1_2:62650595-62650614 Msa0083550:CDS 35.0%
! GTTCAGAAAGCTATTTCCTT+GGG - chr1_2:62650596-62650615 Msa0083550:CDS 35.0%
!! TATTTCCTTGGGTTGAACTA+AGG - chr1_2:62650607-62650626 Msa0083550:CDS 35.0%
!! ATTTCCTTGGGTTGAACTAA+GGG - chr1_2:62650608-62650627 Msa0083550:CDS 35.0%
! TATGGACTAACAGAAAGTTG+TGG - chr1_2:62650636-62650655 Msa0083550:CDS 35.0%
! ATGGACTAACAGAAAGTTGT+GGG - chr1_2:62650637-62650656 Msa0083550:CDS 35.0%
! TCCAACTTTTTGTGCAAAAG+TGG - chr1_2:62650725-62650744 Msa0083550:CDS 35.0%
!! ACCACTTTTGCACAAAAAGT+TGG + chr1_2:62650729-62650748 None:intergenic 35.0%
AAAGTGGTAGACATTGAAAC+AGG - chr1_2:62650741-62650760 Msa0083550:CDS 35.0%
AAGTGGTAGACATTGAAACA+GGG - chr1_2:62650742-62650761 Msa0083550:CDS 35.0%
! ACTGCAACAATTGATTCAGA+AGG - chr1_2:62650852-62650871 Msa0083550:CDS 35.0%
! CAACAATTGATTCAGAAGGT+TGG - chr1_2:62650856-62650875 Msa0083550:CDS 35.0%
CTTGGTTATATCGATGAGAA+TGG - chr1_2:62650894-62650913 Msa0083550:CDS 35.0%
AACTGCTGCATCAACAATAA+GGG + chr1_2:62651173-62651192 None:intergenic 35.0%
TAACTGCTGCATCAACAATA+AGG + chr1_2:62651174-62651193 None:intergenic 35.0%
ATGTGGACAAAAAATGTTGC+AGG - chr1_2:62651254-62651273 Msa0083550:CDS 35.0%
TGTGGACAAAAAATGTTGCA+GGG - chr1_2:62651255-62651274 Msa0083550:CDS 35.0%
!! CAAGTCATTCAATTTGTTGC+AGG - chr1_2:62651352-62651371 Msa0083550:CDS 35.0%
! AATCATTGTTGCTTAGTGGT+TGG - chr1_2:62651433-62651452 Msa0083550:CDS 35.0%
CTCCATATAAGAAAGTGAGA+AGG - chr1_2:62651741-62651760 Msa0083550:CDS 35.0%
ACCCTTCTCACTTTCTTATA+TGG + chr1_2:62651746-62651765 None:intergenic 35.0%
! TGTCCTGAAATTTTTGTGGC+CGG + chr1_2:62649350-62649369 None:intergenic 40.0%
AAATGTCAGGAGAGGAGATT+TGG - chr1_2:62649554-62649573 Msa0083550:CDS 40.0%
TCATCCGTTGAAGAAGAATC+TGG - chr1_2:62649577-62649596 Msa0083550:CDS 40.0%
! CTCTGTCTCCATTTGATAAC+AGG - chr1_2:62649605-62649624 Msa0083550:CDS 40.0%
! TCTCCATTTGATAACAGGAG+CGG - chr1_2:62649610-62649629 Msa0083550:CDS 40.0%
TAACCGCTCCTGTTATCAAA+TGG + chr1_2:62649616-62649635 None:intergenic 40.0%
!! TGTTGAGATCTGGCTTTGTT+GGG + chr1_2:62649696-62649715 None:intergenic 40.0%
ATGGAACAAAGCTGTTGCAA+GGG + chr1_2:62649839-62649858 None:intergenic 40.0%
! TGACTTAGTATTGAGAGGGT+TGG + chr1_2:62649971-62649990 None:intergenic 40.0%
TTACACAAATTGGTCCCAAC+TGG - chr1_2:62650051-62650070 Msa0083550:intron 40.0%
GAATTGTAGGAACTCCAGTT+GGG + chr1_2:62650068-62650087 None:intergenic 40.0%
AGAATTGTAGGAACTCCAGT+TGG + chr1_2:62650069-62650088 None:intergenic 40.0%
TTCCTACAATTCTCACCTCT+GGG - chr1_2:62650076-62650095 Msa0083550:CDS 40.0%
CCCTGAAGAGTAAAGTATAG+CGG + chr1_2:62650199-62650218 None:intergenic 40.0%
CCGCTATACTTTACTCTTCA+GGG - chr1_2:62650196-62650215 Msa0083550:CDS 40.0%
AGTCCGTAGACATGAAACAT+TGG + chr1_2:62650342-62650361 None:intergenic 40.0%
GGACTGATGTTCTTTGGATT+TGG - chr1_2:62650357-62650376 Msa0083550:intron 40.0%
TTCACCAATGAGTGGATAAC+TGG + chr1_2:62650489-62650508 None:intergenic 40.0%
TAGCATGTTTCACCAATGAG+TGG + chr1_2:62650497-62650516 None:intergenic 40.0%
GTGAAACATGCTAGCAAAGA+TGG - chr1_2:62650504-62650523 Msa0083550:CDS 40.0%
! GTGATTTGTCTAGCCTAAGA+AGG - chr1_2:62650529-62650548 Msa0083550:CDS 40.0%
TGGACTAACAGAAAGTTGTG+GGG - chr1_2:62650638-62650657 Msa0083550:CDS 40.0%
GGAGAGTTATGGTTGAAAAG+CGG - chr1_2:62650789-62650808 Msa0083550:CDS 40.0%
! TTGATTCAGAAGGTTGGTTG+AGG - chr1_2:62650862-62650881 Msa0083550:CDS 40.0%
AAGGAGCTAATCAAGCACAA+AGG - chr1_2:62650942-62650961 Msa0083550:CDS 40.0%
AGGAGCTAATCAAGCACAAA+GGG - chr1_2:62650943-62650962 Msa0083550:CDS 40.0%
!! AATCAAGCACAAAGGGTATC+AGG - chr1_2:62650950-62650969 Msa0083550:CDS 40.0%
! ATATGTGGATTGCTTGTGTC+AGG - chr1_2:62651108-62651127 Msa0083550:CDS 40.0%
ACTGCTGCATCAACAATAAG+GGG + chr1_2:62651172-62651191 None:intergenic 40.0%
TAAGAGTGAAAATAGGCGGA+GGG + chr1_2:62651209-62651228 None:intergenic 40.0%
ATAAGAGTGAAAATAGGCGG+AGG + chr1_2:62651210-62651229 None:intergenic 40.0%
CTCTCTGTGACTTTCTTATG+TGG - chr1_2:62651237-62651256 Msa0083550:CDS 40.0%
AGGGTTGAAGATGAAGAAAC+TGG - chr1_2:62651274-62651293 Msa0083550:CDS 40.0%
GGGTTGAAGATGAAGAAACT+GGG - chr1_2:62651275-62651294 Msa0083550:CDS 40.0%
CTATAGGAAAACGAGAAAGC+AGG + chr1_2:62651661-62651680 None:intergenic 40.0%
CTCACAACTTAGAAACAAGC+TGG + chr1_2:62651844-62651863 None:intergenic 40.0%
AGTAACTTGGGCATAAACGA+CGG - chr1_2:62651862-62651881 Msa0083550:intron 40.0%
TTACCCCTTCTGATATAAGG+CGG + chr1_2:62651948-62651967 None:intergenic 40.0%
CTAGCTACGTTTCACTCTCT+TGG - chr1_2:62649324-62649343 Msa0083550:three_prime_UTR 45.0%
ATGCTAATGTAGTGTGGCTG+TGG + chr1_2:62649494-62649513 None:intergenic 45.0%
CAGGGAAAAAATGTCAGGAG+AGG - chr1_2:62649546-62649565 Msa0083550:CDS 45.0%
!! GTGTTGAGATCTGGCTTTGT+TGG + chr1_2:62649697-62649716 None:intergenic 45.0%
! AGAGTTGCAGTGTTGAGATC+TGG + chr1_2:62649706-62649725 None:intergenic 45.0%
CATCAGCAAGATCTCCTTGT+GGG + chr1_2:62649744-62649763 None:intergenic 45.0%
CATGGAACAAAGCTGTTGCA+AGG + chr1_2:62649840-62649859 None:intergenic 45.0%
!! CTTGCAACAGCTTTGTTCCA+TGG - chr1_2:62649838-62649857 Msa0083550:intron 45.0%
GCGAAGCAAGTACATGATTC+AGG - chr1_2:62649997-62650016 Msa0083550:intron 45.0%
GTTCCTACAATTCTCACCTC+TGG - chr1_2:62650075-62650094 Msa0083550:CDS 45.0%
AGAGTTGCCACATGTTCATG+TGG - chr1_2:62650158-62650177 Msa0083550:intron 45.0%
GATTGCTCCACATGAACATG+TGG + chr1_2:62650168-62650187 None:intergenic 45.0%
GCCGCTATACTTTACTCTTC+AGG - chr1_2:62650195-62650214 Msa0083550:CDS 45.0%
CTTTACTCTTCAGGGACTAC+TGG - chr1_2:62650204-62650223 Msa0083550:CDS 45.0%
CCAGCAGAGCAGTTTCATTA+TGG + chr1_2:62650271-62650290 None:intergenic 45.0%
CCATAATGAAACTGCTCTGC+TGG - chr1_2:62650268-62650287 Msa0083550:intron 45.0%
GAAACATTGGAATGAAGGCG+AGG + chr1_2:62650329-62650348 None:intergenic 45.0%
! GTCTACGGACTGATGTTCTT+TGG - chr1_2:62650351-62650370 Msa0083550:intron 45.0%
!! GGATTTGGGTTGTTGTGTGT+TGG - chr1_2:62650372-62650391 Msa0083550:intron 45.0%
ACCAATGAGTGGATAACTGG+TGG + chr1_2:62650486-62650505 None:intergenic 45.0%
TTGTCTAGCCTAAGAAGGGT+TGG - chr1_2:62650534-62650553 Msa0083550:CDS 45.0%
GGACTAACAGAAAGTTGTGG+GGG - chr1_2:62650639-62650658 Msa0083550:CDS 45.0%
! AAAGCTCATCCAGAAGCATG+TGG - chr1_2:62650693-62650712 Msa0083550:CDS 45.0%
ATCAGCTTTCCACATGCTTC+TGG + chr1_2:62650705-62650724 None:intergenic 45.0%
CATAACTCTCCTTCCTTGAG+TGG + chr1_2:62650780-62650799 None:intergenic 45.0%
CACTCAAGGAAGGAGAGTTA+TGG - chr1_2:62650778-62650797 Msa0083550:CDS 45.0%
AAGAGTGAAAATAGGCGGAG+GGG + chr1_2:62651208-62651227 None:intergenic 45.0%
!! CATTCAATTTGTTGCAGGCC+AGG - chr1_2:62651357-62651376 Msa0083550:CDS 45.0%
ATGAAATCAGGAGCCAAGAG+TGG + chr1_2:62651387-62651406 None:intergenic 45.0%
GGAGCTAAGAGAAGCAGAAA+TGG + chr1_2:62651640-62651659 None:intergenic 45.0%
ATGAAGTGGAGTTCAAAGCG+AGG - chr1_2:62651917-62651936 Msa0083550:intron 45.0%
AGAAGCCGCCTTATATCAGA+AGG - chr1_2:62651940-62651959 Msa0083550:intron 45.0%
GAAGCCGCCTTATATCAGAA+GGG - chr1_2:62651941-62651960 Msa0083550:intron 45.0%
AAGCCGCCTTATATCAGAAG+GGG - chr1_2:62651942-62651961 Msa0083550:intron 45.0%
GACGTTCTCTACATAGGCCA+AGG + chr1_2:62649291-62649310 None:intergenic 50.0%
CTACGTTTCACTCTCTTGGC+CGG - chr1_2:62649328-62649347 Msa0083550:three_prime_UTR 50.0%
TGGCCGGCCACAAAAATTTC+AGG - chr1_2:62649344-62649363 Msa0083550:three_prime_UTR 50.0%
AGCGGTTACGATCCAAGAAC+AGG - chr1_2:62649628-62649647 Msa0083550:intron 50.0%
GTGCTATCACAGTTCCCACA+AGG - chr1_2:62649727-62649746 Msa0083550:intron 50.0%
GCATCAGCAAGATCTCCTTG+TGG + chr1_2:62649745-62649764 None:intergenic 50.0%
!! AGTATTGAGAGGGTTGGCTG+TGG + chr1_2:62649965-62649984 None:intergenic 50.0%
GTCCCAGAGGTGAGAATTGT+AGG + chr1_2:62650081-62650100 None:intergenic 50.0%
CTTTCCATCAGATGTCCCAG+AGG + chr1_2:62650094-62650113 None:intergenic 50.0%
GGGACTACTGGAGTAAGCAA+AGG - chr1_2:62650216-62650235 Msa0083550:CDS 50.0%
CTTCTCGATAGCGACAAGCA+TGG + chr1_2:62650436-62650455 None:intergenic 50.0%
GCCACCAGTTATCCACTCAT+TGG - chr1_2:62650482-62650501 Msa0083550:CDS 50.0%
! AGGTGCTGCACCTTTGAGTA+AGG - chr1_2:62650560-62650579 Msa0083550:CDS 50.0%
!! TCCTTGGGTTGAACTAAGGG+CGG - chr1_2:62650611-62650630 Msa0083550:CDS 50.0%
!! GTTGAACTAAGGGCGGGTTA+TGG - chr1_2:62650618-62650637 Msa0083550:CDS 50.0%
! TGTGGGGGAGCTACGTTTTT+CGG - chr1_2:62650654-62650673 Msa0083550:CDS 50.0%
AACTCTCCTTCCTTGAGTGG+AGG + chr1_2:62650777-62650796 None:intergenic 50.0%
! TCAGAAGGTTGGTTGAGGAC+AGG - chr1_2:62650867-62650886 Msa0083550:CDS 50.0%
TGGTTGAGGACAGGTGATCT+TGG - chr1_2:62650876-62650895 Msa0083550:CDS 50.0%
AGCACAGATTCCAGTTCTGC+AGG + chr1_2:62651139-62651158 None:intergenic 50.0%
AGAAACTGGGCAGATACCGA+TGG - chr1_2:62651288-62651307 Msa0083550:CDS 50.0%
GCAGATACCGATGGCATATG+TGG - chr1_2:62651297-62651316 Msa0083550:CDS 50.0%
TACCGATGGCATATGTGGTG+AGG - chr1_2:62651302-62651321 Msa0083550:CDS 50.0%
ACCGATGGCATATGTGGTGA+GGG - chr1_2:62651303-62651322 Msa0083550:CDS 50.0%
!! CAATTTGTTGCAGGCCAGGT+AGG - chr1_2:62651361-62651380 Msa0083550:CDS 50.0%
AGTATACCAAGGTCAGCTGC+TGG - chr1_2:62651779-62651798 Msa0083550:CDS 50.0%
!! CTCACCTCTGGGACATCTGA+TGG - chr1_2:62650087-62650106 Msa0083550:CDS 55.0%
TGGATAACTGGTGGCACTGC+TGG + chr1_2:62650477-62650496 None:intergenic 55.0%
!! AGCCTAAGAAGGGTTGGCTC+AGG - chr1_2:62650540-62650559 Msa0083550:CDS 55.0%
CACCTGAGCCAACCCTTCTT+AGG + chr1_2:62650545-62650564 None:intergenic 55.0%
!! CCTTGGGTTGAACTAAGGGC+GGG - chr1_2:62650612-62650631 Msa0083550:CDS 55.0%
! GTGGGGGAGCTACGTTTTTC+GGG - chr1_2:62650655-62650674 Msa0083550:CDS 55.0%
!!! GGGAGCTACGTTTTTCGGGT+CGG - chr1_2:62650659-62650678 Msa0083550:CDS 55.0%
GAAGCCTTTGCCTCCACTCA+AGG - chr1_2:62650764-62650783 Msa0083550:CDS 55.0%
CCTTCCTTGAGTGGAGGCAA+AGG + chr1_2:62650771-62650790 None:intergenic 55.0%
CCTTTGCCTCCACTCAAGGA+AGG - chr1_2:62650768-62650787 Msa0083550:CDS 55.0%
TCAGGTAGCTCCTGCAGAAC+TGG - chr1_2:62651126-62651145 Msa0083550:CDS 55.0%
AATAGGCGGAGGGGATCGTA+CGG + chr1_2:62651199-62651218 None:intergenic 55.0%
GCCCTCACCACATATGCCAT+CGG + chr1_2:62651307-62651326 None:intergenic 55.0%
ATCTTGCCAGCAGCTGACCT+TGG + chr1_2:62651788-62651807 None:intergenic 55.0%
CCCGCCCTTAGTTCAACCCA+AGG + chr1_2:62650615-62650634 None:intergenic 60.0%
GCATATGTGGTGAGGGCAGC+TGG - chr1_2:62651310-62651329 Msa0083550:CDS 60.0%
CAGGCCAGGTAGGCCACTCT+TGG - chr1_2:62651371-62651390 Msa0083550:CDS 65.0%
GGAGCCAAGAGTGGCCTACC+TGG + chr1_2:62651378-62651397 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 62649257 62652126 62649257 ID=Msa0083550;Name=Msa0083550
chr1_2 mRNA 62649257 62652126 62649257 ID=Msa0083550-mRNA-1;Parent=Msa0083550;Name=Msa0083550-mRNA-1;_AED=0.11;_eAED=0.12;_QI=0|0.5|0.6|1|0.75|0.6|5|264|571
chr1_2 exon 62649257 62649646 62649257 ID=Msa0083550-mRNA-1:exon:20892;Parent=Msa0083550-mRNA-1
chr1_2 exon 62650065 62650107 62650065 ID=Msa0083550-mRNA-1:exon:20891;Parent=Msa0083550-mRNA-1
chr1_2 exon 62650186 62650253 62650186 ID=Msa0083550-mRNA-1:exon:20890;Parent=Msa0083550-mRNA-1
chr1_2 exon 62650412 62651834 62650412 ID=Msa0083550-mRNA-1:exon:20889;Parent=Msa0083550-mRNA-1
chr1_2 exon 62652071 62652126 62652071 ID=Msa0083550-mRNA-1:exon:20888;Parent=Msa0083550-mRNA-1
chr1_2 CDS 62652071 62652126 62652071 ID=Msa0083550-mRNA-1:cds;Parent=Msa0083550-mRNA-1
chr1_2 CDS 62650412 62651834 62650412 ID=Msa0083550-mRNA-1:cds;Parent=Msa0083550-mRNA-1
chr1_2 CDS 62650186 62650253 62650186 ID=Msa0083550-mRNA-1:cds;Parent=Msa0083550-mRNA-1
chr1_2 CDS 62650065 62650107 62650065 ID=Msa0083550-mRNA-1:cds;Parent=Msa0083550-mRNA-1
chr1_2 CDS 62649521 62649646 62649521 ID=Msa0083550-mRNA-1:cds;Parent=Msa0083550-mRNA-1
chr1_2 three_prime_UTR 62649257 62649520 62649257 ID=Msa0083550-mRNA-1:three_prime_utr;Parent=Msa0083550-mRNA-1
Gene Sequence

>Msa0083550

ATGAAAGAATATTCATTTTTCAATTTATTTACCTTGGCCTATGTAGAGAACGTCAAGGAAAAAATGTCAGGAGAGGAGATTTGGTCATCCGTTGAAGAAGAATCTGGTGAATCTCTGTCTCCATTTGATAACAGGAGCGGTTACGATCCAAGAACAGGAATTTACCATTCTCTTGTTAAGCTTGAAACCAAACATGAAATCCCAACAAAGCCAGATCTCAACACTGCAACTCTTGTGCTATCACAGTTCCCACAAGGAGATCTTGCTGATGCAAGAATTGCATTCATTGACTTAAATACTAATCATAGTGTAACTTACGGTGAGATTCGTCGATCAGTTTACTCCCTTGCAACAGCTTTGTTCCATGGACTTGAGATTAGAAAAGGCGACGTCGTGTTTTTATTGTCTCCAAACTCAATCTTGTACTCAACTATATGTTTAGCTGTGTTATCAGTTGGTGCAATTCTTACCACAGCCAACCCTCTCAATACTAAGTCAGAAATCGCGAAGCAAGTACATGATTCAGGTGCTAAACTAGCTATCTCAGCACCAGAAGAGTTACACAAATTGGTCCCAACTGGAGTTCCTACAATTCTCACCTCTGGGACATCTGATGGAAAGTTTTTATCAGTTGAAGAGTTAATAGAAGGCTGCTATGATTCACAAGAGTTGCCACATGTTCATGTGGAGCAATCAGACACTGCCGCTATACTTTACTCTTCAGGGACTACTGGAGTAAGCAAAGGTGTTGTTTTGACACATGCAAATCTCATAACCATAATGAAACTGCTCTGCTGGTCTGCTGATGTATCTACAGCACAAGACGATGTTTTCCTCGCCTTCATTCCAATGTTTCATGTCTACGGACTGATGTTCTTTGGATTTGGGTTGTTGTGTGTTGGTGTTACGACAGTTTTGATGCAAAAATATGATTTTCAAGCCATGCTTGTCGCTATCGAGAAGCACAAAGTTAATAACATACCAGCAGTGCCACCAGTTATCCACTCATTGGTGAAACATGCTAGCAAAGATGGCTGTGATTTGTCTAGCCTAAGAAGGGTTGGCTCAGGTGCTGCACCTTTGAGTAAGGAAATGTCACTGGAGTTCAGAAAGCTATTTCCTTGGGTTGAACTAAGGGCGGGTTATGGACTAACAGAAAGTTGTGGGGGAGCTACGTTTTTCGGGTCGGATAAAGATGCTAAAGCTCATCCAGAAGCATGTGGAAAGCTGATTCCAACTTTTTGTGCAAAAGTGGTAGACATTGAAACAGGGAAGCCTTTGCCTCCACTCAAGGAAGGAGAGTTATGGTTGAAAAGCGGTGCTATTATGAAAGAATATCTAGGAAATATTGAGGCAACAACTGCAACAATTGATTCAGAAGGTTGGTTGAGGACAGGTGATCTTGGTTATATCGATGAGAATGGAATTGTCTACATAGTTGAACGAATAAAGGAGCTAATCAAGCACAAAGGGTATCAGGTAGCTCCTGCAGAACTGGAATCTGTGCTGCTAAGTCATCCCCTTATTGTTGATGCAGCAGTTATTCCGGTTGAAGATGAAGAAACTGGGCAGATACCGATGGCATATGTGGTGGCTCCATATAAGAAAGTGAGAAGGGTGAGTTTTATTGACAGTATACCAAGGTCAGCTGCTGGCAAGATATTGCGAAAAGATCTTGTTTTGCAAAGCAAATACCAGCTTGTTTCTAAGTTGTGA
Protein sequence

>Msa0083550

MKEYSFFNLFTLAYVENVKEKMSGEEIWSSVEEESGESLSPFDNRSGYDPRTGIYHSLVKLETKHEIPTKPDLNTATLVLSQFPQGDLADARIAFIDLNTNHSVTYGEIRRSVYSLATALFHGLEIRKGDVVFLLSPNSILYSTICLAVLSVGAILTTANPLNTKSEIAKQVHDSGAKLAISAPEELHKLVPTGVPTILTSGTSDGKFLSVEELIEGCYDSQELPHVHVEQSDTAAILYSSGTTGVSKGVVLTHANLITIMKLLCWSADVSTAQDDVFLAFIPMFHVYGLMFFGFGLLCVGVTTVLMQKYDFQAMLVAIEKHKVNNIPAVPPVIHSLVKHASKDGCDLSSLRRVGSGAAPLSKEMSLEFRKLFPWVELRAGYGLTESCGGATFFGSDKDAKAHPEACGKLIPTFCAKVVDIETGKPLPPLKEGELWLKSGAIMKEYLGNIEATTATIDSEGWLRTGDLGYIDENGIVYIVERIKELIKHKGYQVAPAELESVLLSHPLIVDAAVIPVEDEETGQIPMAYVVAPYKKVRRVSFIDSIPRSAAGKILRKDLVLQSKYQLVSKL*