Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693410 | KEH30829.1 | 98.936 | 188 | 2 | 0 | 2 | 189 | 3 | 190 | 1.02e-134 | 384 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693410 | sp|P42856|ZB14_MAIZE | 65.185 | 135 | 39 | 1 | 55 | 189 | 2 | 128 | 1.27e-61 | 190 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693410 | A0A072UM23 | 98.936 | 188 | 2 | 0 | 2 | 189 | 3 | 190 | 4.86e-135 | 384 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0081840 | Msa0693410 | 0.805183 | 1.509300e-49 | -8.615850e-47 |
| Msa0087130 | Msa0693410 | 0.815852 | 7.474790e-52 | -8.615850e-47 |
| Msa0094990 | Msa0693410 | 0.805657 | 1.200745e-49 | -8.615850e-47 |
| Msa0607440 | Msa0693410 | 0.821768 | 3.386815e-53 | -8.615850e-47 |
| Msa0618260 | Msa0693410 | 0.828070 | 1.102825e-54 | -8.615850e-47 |
| Msa0633720 | Msa0693410 | 0.816356 | 5.768314e-52 | -8.615850e-47 |
| Msa0657820 | Msa0693410 | 0.814750 | 1.314106e-51 | -8.615850e-47 |
| Msa0693410 | Msa0795930 | 0.804744 | 1.864981e-49 | -8.615850e-47 |
| Msa0693410 | Msa0829430 | 0.831334 | 1.771045e-55 | -8.615850e-47 |
| Msa0693410 | Msa0836200 | 0.803924 | 2.763584e-49 | -8.615850e-47 |
| Msa0693410 | Msa0840630 | 0.800412 | 1.459069e-48 | -8.615850e-47 |
| Msa0693410 | Msa1067710 | 0.800143 | 1.654839e-48 | -8.615850e-47 |
| Msa0693410 | Msa1081700 | 0.810042 | 1.403002e-50 | -8.615850e-47 |
| Msa0693410 | Msa1113210 | 0.803959 | 2.717335e-49 | -8.615850e-47 |
| Msa0693410 | Msa1161520 | 0.803970 | 2.702967e-49 | -8.615850e-47 |
| Msa0693410 | Msa1308460 | 0.801891 | 7.268000e-49 | -8.615850e-47 |
| Msa0693410 | Msa1359620 | 0.806356 | 8.561538e-50 | -8.615850e-47 |
| Msa0693410 | Msa1403700 | 0.807242 | 5.561380e-50 | -8.615850e-47 |
| Msa0693410 | Msa1408190 | 0.813504 | 2.475384e-51 | -8.615850e-47 |
| Msa0693410 | Msa1412830 | 0.801867 | 7.351529e-49 | -8.615850e-47 |
| Msa0693410 | Msa1438780 | 0.801125 | 1.043302e-48 | -8.615850e-47 |
| Msa0693410 | Msa1448990 | 0.811194 | 7.907951e-51 | -8.615850e-47 |
| Msa0693410 | Msa1450850 | 0.801536 | 8.596915e-49 | -8.615850e-47 |
| Msa0693410 | Msa1451780 | 0.812630 | 3.848292e-51 | -8.615850e-47 |
| Msa0121080 | Msa0693410 | 0.800630 | 1.316875e-48 | -8.615850e-47 |
| Msa0128070 | Msa0693410 | 0.802506 | 5.432423e-49 | -8.615850e-47 |
| Msa0148430 | Msa0693410 | 0.820513 | 6.593276e-53 | -8.615850e-47 |
| Msa0164630 | Msa0693410 | 0.828246 | 1.000053e-54 | -8.615850e-47 |
| Msa0206600 | Msa0693410 | 0.804701 | 1.903921e-49 | -8.615850e-47 |
| Msa0438440 | Msa0693410 | 0.821414 | 4.089289e-53 | -8.615850e-47 |
| Msa0251140 | Msa0693410 | 0.829045 | 6.411930e-55 | -8.615850e-47 |
| Msa0312780 | Msa0693410 | 0.810630 | 1.047911e-50 | -8.615850e-47 |
| Msa0573970 | Msa0693410 | 0.805340 | 1.399804e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693410 | MtrunA17_Chr4g0043791 | 94.681 | 188 | 2 | 1 | 2 | 189 | 3 | 182 | 1.04e-129 | 361 |
| Msa0693410 | MtrunA17_Chr6g0460311 | 61.379 | 145 | 48 | 1 | 45 | 189 | 17 | 153 | 3.55e-64 | 194 |
| Msa0693410 | MtrunA17_Chr7g0255021 | 52.857 | 70 | 31 | 2 | 53 | 120 | 4 | 73 | 1.24e-16 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693410 | AT1G31160.1 | 66.129 | 186 | 50 | 3 | 9 | 189 | 10 | 187 | 8.15e-71 | 213 |
| Msa0693410 | AT3G56490.1 | 62.238 | 143 | 44 | 2 | 47 | 189 | 15 | 147 | 8.85e-62 | 189 |
| Msa0693410 | AT1G31160.2 | 61.864 | 118 | 40 | 2 | 9 | 121 | 10 | 127 | 6.58e-31 | 110 |
Find 55 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAATCCATCTCTGAATTT+TGG | 0.116683 | 4_4:-62314609 | None:intergenic |
| TTCTTTCTCGGCTACTATTT+TGG | 0.146644 | 4_4:-62314917 | None:intergenic |
| CGGTTCCTTTCTCTCTTCTT+AGG | 0.195364 | 4_4:+62312889 | Msa0693410:CDS |
| ACAACCTCACTCTTGTTTCT+AGG | 0.224460 | 4_4:+62312852 | Msa0693410:five_prime_UTR |
| TGCTAGACATGGGGAGATAC+TGG | 0.286551 | 4_4:+62314876 | Msa0693410:CDS |
| TTTGTGGCGCTGGCGCTAAA+AGG | 0.345539 | 4_4:-62314088 | None:intergenic |
| AGCATTAACAGCAGCTGCTT+TGG | 0.346160 | 4_4:-62314128 | None:intergenic |
| ATTTGACAAGATCATAAATA+AGG | 0.353101 | 4_4:+62314497 | Msa0693410:CDS |
| TTACTTTAAAGAGTAAGTTT+AGG | 0.394126 | 4_4:-62315233 | None:intergenic |
| ATCAGCGATACCTTCTTTCT+CGG | 0.398686 | 4_4:-62314929 | None:intergenic |
| ACAGGCTCCGGTTCATGTTC+TGG | 0.408262 | 4_4:+62314581 | Msa0693410:CDS |
| TTGTTCATTGTTTGTGGCGC+TGG | 0.410950 | 4_4:-62314098 | None:intergenic |
| TGCAGCTTGTTCATTGTTTG+TGG | 0.421955 | 4_4:-62314104 | None:intergenic |
| AGAGATGGATTAACAGAACT+TGG | 0.427247 | 4_4:+62314618 | Msa0693410:CDS |
| CAACTATTTCTAAGATCTGC+AGG | 0.428665 | 4_4:-62315174 | None:intergenic |
| AATTACCTGCGACATTGAAT+AGG | 0.437831 | 4_4:-62313064 | None:intergenic |
| ATTTATCTTGTCTCTGAAGT+AGG | 0.438289 | 4_4:+62315358 | Msa0693410:three_prime_UTR |
| TAGGTGGGAGACAGATGAAT+TGG | 0.451270 | 4_4:+62315120 | Msa0693410:CDS |
| TCTTCATATACAATGCTTGA+AGG | 0.456414 | 4_4:-62314525 | None:intergenic |
| TGTCAGGAACTACTCACAAT+TGG | 0.465151 | 4_4:+62312982 | Msa0693410:intron |
| GGAATGACCAGAACATGAAC+CGG | 0.476627 | 4_4:-62314588 | None:intergenic |
| CTTAAGCAGATAGCTCAGTT+AGG | 0.498510 | 4_4:+62315394 | Msa0693410:three_prime_UTR |
| GGACATCAGTCCACAGGCTC+CGG | 0.500682 | 4_4:+62314569 | Msa0693410:CDS |
| TTCTTCCTATTCAATGTCGC+AGG | 0.503231 | 4_4:+62313059 | Msa0693410:CDS |
| CATTGTATATGAAGATGAAA+AGG | 0.504283 | 4_4:+62314533 | Msa0693410:CDS |
| CATCTGCACTTGCATGTCCT+AGG | 0.526980 | 4_4:+62315101 | Msa0693410:CDS |
| CTTCATATACAATGCTTGAA+GGG | 0.529749 | 4_4:-62314524 | None:intergenic |
| GTCATTCCAAAATTCAGAGA+TGG | 0.530580 | 4_4:+62314603 | Msa0693410:CDS |
| GCTGCTGTTAATGCTGATAG+TGG | 0.535440 | 4_4:+62314136 | Msa0693410:CDS |
| TCTAGGAACCATGGCAGCTA+CGG | 0.537131 | 4_4:+62312869 | Msa0693410:exon |
| AGACAGATGAATTGGCCACC+TGG | 0.537389 | 4_4:+62315128 | Msa0693410:CDS |
| CTGCACTTGCATGTCCTAGG+TGG | 0.538200 | 4_4:+62315104 | Msa0693410:CDS |
| GTTTAATGTTGATACATTGT+CGG | 0.541470 | 4_4:-62314163 | None:intergenic |
| TGTTACCTAAGAAGAGAGAA+AGG | 0.545840 | 4_4:-62312894 | None:intergenic |
| AGCTCAGTTAGGTGAGCTGA+GGG | 0.546466 | 4_4:+62315405 | Msa0693410:three_prime_UTR |
| AAAATAGTAGCCGAGAAAGA+AGG | 0.558191 | 4_4:+62314919 | Msa0693410:CDS |
| GAGAAAGAAGGTATCGCTGA+TGG | 0.560682 | 4_4:+62314931 | Msa0693410:CDS |
| GAAAGGAACCGTAGCTGCCA+TGG | 0.566043 | 4_4:-62312877 | None:intergenic |
| GCTAGACATGGGGAGATACT+GGG | 0.568863 | 4_4:+62314877 | Msa0693410:CDS |
| AGTGCAGATGATACACACTT+TGG | 0.574867 | 4_4:-62315088 | None:intergenic |
| TAGCTCAGTTAGGTGAGCTG+AGG | 0.584634 | 4_4:+62315404 | Msa0693410:three_prime_UTR |
| GAGATGGATTAACAGAACTT+GGG | 0.585175 | 4_4:+62314619 | Msa0693410:CDS |
| TTGCAGGCTGATGCTAGACA+TGG | 0.589421 | 4_4:+62314865 | Msa0693410:intron |
| TGCACTTGCATGTCCTAGGT+GGG | 0.590386 | 4_4:+62315105 | Msa0693410:CDS |
| AGATCTTAGAAATAGTTGAA+TGG | 0.600454 | 4_4:+62315179 | Msa0693410:three_prime_UTR |
| GACTGATGTCCCGAAAAGCT+AGG | 0.605770 | 4_4:-62314557 | None:intergenic |
| TGCAGGCTGATGCTAGACAT+GGG | 0.607182 | 4_4:+62314866 | Msa0693410:intron |
| AATTCATCTGTCTCCCACCT+AGG | 0.607223 | 4_4:-62315118 | None:intergenic |
| ACTCTTGTTTCTAGGAACCA+TGG | 0.626363 | 4_4:+62312860 | Msa0693410:exon |
| AGAACATGAACCGGAGCCTG+TGG | 0.626518 | 4_4:-62314579 | None:intergenic |
| TGGATTAACAGAACTTGGGA+AGG | 0.640825 | 4_4:+62314623 | Msa0693410:CDS |
| AAGATCTGCAGGAATCAGCA+AGG | 0.657222 | 4_4:-62315163 | None:intergenic |
| TTTCGTGTTGTCATCAACAG+TGG | 0.675033 | 4_4:+62314955 | Msa0693410:CDS |
| GCAGGCTGATGCTAGACATG+GGG | 0.678497 | 4_4:+62314867 | Msa0693410:intron |
| GGTTCCTAGAAACAAGAGTG+AGG | 0.715029 | 4_4:-62312856 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTAATTAATATTTTTA+TGG | - | chr4_4:62312823-62312842 | None:intergenic | 0.0% |
| !! | AATAATAAAATAGAATCATT+GGG | - | chr4_4:62314469-62314488 | None:intergenic | 10.0% |
| !! | GAATAATAAAATAGAATCAT+TGG | - | chr4_4:62314470-62314489 | None:intergenic | 15.0% |
| !! | TACACTAATTTATTGTTAAA+AGG | + | chr4_4:62314710-62314729 | Msa0693410:intron | 15.0% |
| !! | ACACTAATTTATTGTTAAAA+GGG | + | chr4_4:62314711-62314730 | Msa0693410:intron | 15.0% |
| !!! | TATTAGCTTTGATTTATTAT+TGG | + | chr4_4:62314785-62314804 | Msa0693410:intron | 15.0% |
| !!! | ATTAGCTTTGATTTATTATT+GGG | + | chr4_4:62314786-62314805 | Msa0693410:intron | 15.0% |
| !!! | GAATTTTTTTATGATCTGTA+AGG | + | chr4_4:62313101-62313120 | Msa0693410:intron | 20.0% |
| !! | GTGAATAAAACAATAAAAGT+TGG | + | chr4_4:62313153-62313172 | Msa0693410:intron | 20.0% |
| !!! | CTTCAAGTTAAAATAAGTTA+TGG | + | chr4_4:62313422-62313441 | Msa0693410:intron | 20.0% |
| !! | AAGAAGACAAAAAAGATAAT+GGG | - | chr4_4:62313991-62314010 | None:intergenic | 20.0% |
| !!! | AGATTTAAAGTTTAAATGCT+AGG | + | chr4_4:62314297-62314316 | Msa0693410:intron | 20.0% |
| !! | ATTTGACAAGATCATAAATA+AGG | + | chr4_4:62314497-62314516 | Msa0693410:CDS | 20.0% |
| !! | ATAAGAAATATGAGATTAGT+GGG | - | chr4_4:62315059-62315078 | None:intergenic | 20.0% |
| !! | AATAAGAAATATGAGATTAG+TGG | - | chr4_4:62315060-62315079 | None:intergenic | 20.0% |
| !!! | TTACTTTAAAGAGTAAGTTT+AGG | - | chr4_4:62315236-62315255 | None:intergenic | 20.0% |
| ! | AATTTGCATTGTTAATGAGA+TGG | + | chr4_4:62313127-62313146 | Msa0693410:intron | 25.0% |
| ! | ATTTGCATTGTTAATGAGAT+GGG | + | chr4_4:62313128-62313147 | Msa0693410:intron | 25.0% |
| !! | AAAGTAGCTAGAATTGATTT+CGG | - | chr4_4:62313507-62313526 | None:intergenic | 25.0% |
| ! | TTAGTTCAAATGCGAAAAAT+TGG | + | chr4_4:62313575-62313594 | Msa0693410:intron | 25.0% |
| !!! | TGGATAACCTTGTTTTTTAT+TGG | + | chr4_4:62313622-62313641 | Msa0693410:intron | 25.0% |
| ! | TAGTTACATGTCTAATAACA+AGG | - | chr4_4:62313705-62313724 | None:intergenic | 25.0% |
| !! | GTTGAACTTGAACAAATTTT+TGG | - | chr4_4:62313761-62313780 | None:intergenic | 25.0% |
| !!! | CTATTTCTAATAATGTTGCT+TGG | + | chr4_4:62313816-62313835 | Msa0693410:intron | 25.0% |
| !! | ACAAAAAAGATCCTTTTCTA+AGG | - | chr4_4:62313850-62313869 | None:intergenic | 25.0% |
| ! | TATAACTTCAAAACAGATTC+TGG | - | chr4_4:62313956-62313975 | None:intergenic | 25.0% |
| ! | GAAGAAGACAAAAAAGATAA+TGG | - | chr4_4:62313992-62314011 | None:intergenic | 25.0% |
| !!! | TTTTTTGTCTTCTTCATGTT+TGG | + | chr4_4:62313997-62314016 | Msa0693410:intron | 25.0% |
| !!! | TTTATTGACTTAGTGTGAAT+TGG | + | chr4_4:62314030-62314049 | Msa0693410:intron | 25.0% |
| ! | GTTTAATGTTGATACATTGT+CGG | - | chr4_4:62314166-62314185 | None:intergenic | 25.0% |
| ! | CATTGTATATGAAGATGAAA+AGG | + | chr4_4:62314533-62314552 | Msa0693410:CDS | 25.0% |
| ! | TCTATATGTACATTAACTCA+AGG | + | chr4_4:62314662-62314681 | Msa0693410:intron | 25.0% |
| ! | AGATCTTAGAAATAGTTGAA+TGG | + | chr4_4:62315179-62315198 | Msa0693410:three_prime_UTR | 25.0% |
| ! | TCTTGCTTTGAATTATTGTC+AGG | + | chr4_4:62312966-62312985 | Msa0693410:intron | 30.0% |
| GTTTATGTTTGTGTGCATTT+AGG | + | chr4_4:62313328-62313347 | Msa0693410:intron | 30.0% | |
| AGGTTATCCAAACATGAATT+AGG | - | chr4_4:62313612-62313631 | None:intergenic | 30.0% | |
| AACTTACTTTGGACAAACAA+AGG | - | chr4_4:62313678-62313697 | None:intergenic | 30.0% | |
| AACAAGGTAACAACTTACTT+TGG | - | chr4_4:62313689-62313708 | None:intergenic | 30.0% | |
| GTTATTAGACATGTAACTAC+TGG | + | chr4_4:62313706-62313725 | Msa0693410:intron | 30.0% | |
| ! | TCTAATAATGTTGCTTGGAT+CGG | + | chr4_4:62313821-62313840 | Msa0693410:intron | 30.0% |
| AAAGAGAGAACCAATCTATT+TGG | + | chr4_4:62314365-62314384 | Msa0693410:intron | 30.0% | |
| TCAAAACATTTGACCAATGT+TGG | + | chr4_4:62314402-62314421 | Msa0693410:intron | 30.0% | |
| CTTCATATACAATGCTTGAA+GGG | - | chr4_4:62314527-62314546 | None:intergenic | 30.0% | |
| TCTTCATATACAATGCTTGA+AGG | - | chr4_4:62314528-62314547 | None:intergenic | 30.0% | |
| ! | GTTAATCCATCTCTGAATTT+TGG | - | chr4_4:62314612-62314631 | None:intergenic | 30.0% |
| TTTCCTTACATAGTAGTAAC+AGG | + | chr4_4:62314812-62314831 | Msa0693410:intron | 30.0% | |
| TTCCTTACATAGTAGTAACA+GGG | + | chr4_4:62314813-62314832 | Msa0693410:intron | 30.0% | |
| ACAAAAAAATCTGCATTTGC+AGG | + | chr4_4:62314849-62314868 | Msa0693410:intron | 30.0% | |
| ACAATTTCCCTTGCTAATAA+TGG | + | chr4_4:62315011-62315030 | Msa0693410:intron | 30.0% | |
| TACCATACCATTATTAGCAA+GGG | - | chr4_4:62315021-62315040 | None:intergenic | 30.0% | |
| ATACCATACCATTATTAGCA+AGG | - | chr4_4:62315022-62315041 | None:intergenic | 30.0% | |
| CTCATATTTCTTATTCTGCT+AGG | + | chr4_4:62315065-62315084 | Msa0693410:intron | 30.0% | |
| !! | ATTTATCTTGTCTCTGAAGT+AGG | + | chr4_4:62315358-62315377 | Msa0693410:three_prime_UTR | 30.0% |
| TGTTACCTAAGAAGAGAGAA+AGG | - | chr4_4:62312897-62312916 | None:intergenic | 35.0% | |
| AATTACCTGCGACATTGAAT+AGG | - | chr4_4:62313067-62313086 | None:intergenic | 35.0% | |
| ATTGCATTTCAGTGCATGTT+TGG | + | chr4_4:62313225-62313244 | Msa0693410:intron | 35.0% | |
| !! | CGGAGGTGTAAAATTGATTT+TGG | - | chr4_4:62313487-62313506 | None:intergenic | 35.0% |
| !! | CACATTTCTGAGACTATGTT+TGG | - | chr4_4:62313540-62313559 | None:intergenic | 35.0% |
| TCTGCAACCTAATTCATGTT+TGG | + | chr4_4:62313602-62313621 | Msa0693410:intron | 35.0% | |
| TCAGCTGCCAATAAAAAACA+AGG | - | chr4_4:62313632-62313651 | None:intergenic | 35.0% | |
| TAACAAGCTCTACCAAAACT+TGG | - | chr4_4:62313929-62313948 | None:intergenic | 35.0% | |
| ! | TAGTGTGAATTGGTGTTTGT+TGG | + | chr4_4:62314040-62314059 | Msa0693410:intron | 35.0% |
| ! | GCATTTTGCTTACTTGTTTC+AGG | + | chr4_4:62314062-62314081 | Msa0693410:intron | 35.0% |
| CAGAAAGATAAGCATTCAGT+GGG | - | chr4_4:62314188-62314207 | None:intergenic | 35.0% | |
| TCAGAAAGATAAGCATTCAG+TGG | - | chr4_4:62314189-62314208 | None:intergenic | 35.0% | |
| AGAGAACCAATCTATTTGGA+AGG | + | chr4_4:62314369-62314388 | Msa0693410:intron | 35.0% | |
| TGTCTACCTTCCAAATAGAT+TGG | - | chr4_4:62314378-62314397 | None:intergenic | 35.0% | |
| AACATTTGACCAATGTTGGA+AGG | + | chr4_4:62314406-62314425 | Msa0693410:intron | 35.0% | |
| !! | ATGAAAAGGTCCTAGCTTTT+CGG | + | chr4_4:62314547-62314566 | Msa0693410:CDS | 35.0% |
| GTCATTCCAAAATTCAGAGA+TGG | + | chr4_4:62314603-62314622 | Msa0693410:CDS | 35.0% | |
| !! | AGAGATGGATTAACAGAACT+TGG | + | chr4_4:62314618-62314637 | Msa0693410:CDS | 35.0% |
| !! | GAGATGGATTAACAGAACTT+GGG | + | chr4_4:62314619-62314638 | Msa0693410:CDS | 35.0% |
| ! | TTCTTTCTCGGCTACTATTT+TGG | - | chr4_4:62314920-62314939 | None:intergenic | 35.0% |
| AAAATAGTAGCCGAGAAAGA+AGG | + | chr4_4:62314919-62314938 | Msa0693410:CDS | 35.0% | |
| TTCCCTTGCTAATAATGGTA+TGG | + | chr4_4:62315016-62315035 | Msa0693410:intron | 35.0% | |
| !! | CAACTATTTCTAAGATCTGC+AGG | - | chr4_4:62315177-62315196 | None:intergenic | 35.0% |
| ! | AAAGTAAGTAGCGTGTTTTG+TGG | + | chr4_4:62315249-62315268 | Msa0693410:intron | 35.0% |
| ! | AAGTAAGTAGCGTGTTTTGT+GGG | + | chr4_4:62315250-62315269 | Msa0693410:intron | 35.0% |
| ! | ACAACCTCACTCTTGTTTCT+AGG | + | chr4_4:62312852-62312871 | Msa0693410:five_prime_UTR | 40.0% |
| !! | ACTCTTGTTTCTAGGAACCA+TGG | + | chr4_4:62312860-62312879 | Msa0693410:exon | 40.0% |
| TGTCAGGAACTACTCACAAT+TGG | + | chr4_4:62312982-62313001 | Msa0693410:intron | 40.0% | |
| TTCTTCCTATTCAATGTCGC+AGG | + | chr4_4:62313059-62313078 | Msa0693410:CDS | 40.0% | |
| !!! | TCAGTGCATGTTTGGTTTTG+AGG | + | chr4_4:62313233-62313252 | Msa0693410:intron | 40.0% |
| ! | GTAGCTAGAATTGATTTCGG+AGG | - | chr4_4:62313504-62313523 | None:intergenic | 40.0% |
| TCACAATCAACAACAGCACA+TGG | - | chr4_4:62313783-62313802 | None:intergenic | 40.0% | |
| TGGATCGGATACCTTAGAAA+AGG | + | chr4_4:62313836-62313855 | Msa0693410:intron | 40.0% | |
| ! | TTTTGTGTGTCTGCACTGTT+AGG | + | chr4_4:62313864-62313883 | Msa0693410:intron | 40.0% |
| ! | TGCAGCTTGTTCATTGTTTG+TGG | - | chr4_4:62314107-62314126 | None:intergenic | 40.0% |
| !! | TGAAAAGGTCCTAGCTTTTC+GGG | + | chr4_4:62314548-62314567 | Msa0693410:CDS | 40.0% |
| TGGATTAACAGAACTTGGGA+AGG | + | chr4_4:62314623-62314642 | Msa0693410:CDS | 40.0% | |
| CTCCCTGTTACTACTATGTA+AGG | - | chr4_4:62314818-62314837 | None:intergenic | 40.0% | |
| !! | TTTCTCGGCTACTATTTTGG+CGG | - | chr4_4:62314917-62314936 | None:intergenic | 40.0% |
| ATCAGCGATACCTTCTTTCT+CGG | - | chr4_4:62314932-62314951 | None:intergenic | 40.0% | |
| TTTCGTGTTGTCATCAACAG+TGG | + | chr4_4:62314955-62314974 | Msa0693410:CDS | 40.0% | |
| AGTGCAGATGATACACACTT+TGG | - | chr4_4:62315091-62315110 | None:intergenic | 40.0% | |
| !! | AGGATTGACTTTTATCCAGG+TGG | - | chr4_4:62315146-62315165 | None:intergenic | 40.0% |
| !! | GCAAGGATTGACTTTTATCC+AGG | - | chr4_4:62315149-62315168 | None:intergenic | 40.0% |
| CTTAAGCAGATAGCTCAGTT+AGG | + | chr4_4:62315394-62315413 | Msa0693410:three_prime_UTR | 40.0% | |
| GGTTCCTAGAAACAAGAGTG+AGG | - | chr4_4:62312859-62312878 | None:intergenic | 45.0% | |
| CGGTTCCTTTCTCTCTTCTT+AGG | + | chr4_4:62312889-62312908 | Msa0693410:CDS | 45.0% | |
| ! | TGTCATCCAGCACCAAGTTT+TGG | + | chr4_4:62313914-62313933 | Msa0693410:intron | 45.0% |
| TTGTTCATTGTTTGTGGCGC+TGG | - | chr4_4:62314101-62314120 | None:intergenic | 45.0% | |
| AGCATTAACAGCAGCTGCTT+TGG | - | chr4_4:62314131-62314150 | None:intergenic | 45.0% | |
| GCTGCTGTTAATGCTGATAG+TGG | + | chr4_4:62314136-62314155 | Msa0693410:CDS | 45.0% | |
| GGAATGACCAGAACATGAAC+CGG | - | chr4_4:62314591-62314610 | None:intergenic | 45.0% | |
| !! | GAGAAAGAAGGTATCGCTGA+TGG | + | chr4_4:62314931-62314950 | Msa0693410:CDS | 45.0% |
| AATTCATCTGTCTCCCACCT+AGG | - | chr4_4:62315121-62315140 | None:intergenic | 45.0% | |
| TAGGTGGGAGACAGATGAAT+TGG | + | chr4_4:62315120-62315139 | Msa0693410:CDS | 45.0% | |
| AAGATCTGCAGGAATCAGCA+AGG | - | chr4_4:62315166-62315185 | None:intergenic | 45.0% | |
| TCTAGGAACCATGGCAGCTA+CGG | + | chr4_4:62312869-62312888 | Msa0693410:exon | 50.0% | |
| !! | GCTCTACCAAAACTTGGTGC+TGG | - | chr4_4:62313923-62313942 | None:intergenic | 50.0% |
| !! | AGAGAGAGAAAGAGCACCTC+AGG | - | chr4_4:62314432-62314451 | None:intergenic | 50.0% |
| GACTGATGTCCCGAAAAGCT+AGG | - | chr4_4:62314560-62314579 | None:intergenic | 50.0% | |
| !! | TTTTCGGGACATCAGTCCAC+AGG | + | chr4_4:62314563-62314582 | Msa0693410:CDS | 50.0% |
| TTGCAGGCTGATGCTAGACA+TGG | + | chr4_4:62314865-62314884 | Msa0693410:intron | 50.0% | |
| TGCAGGCTGATGCTAGACAT+GGG | + | chr4_4:62314866-62314885 | Msa0693410:intron | 50.0% | |
| TGCTAGACATGGGGAGATAC+TGG | + | chr4_4:62314876-62314895 | Msa0693410:CDS | 50.0% | |
| GCTAGACATGGGGAGATACT+GGG | + | chr4_4:62314877-62314896 | Msa0693410:CDS | 50.0% | |
| CATCTGCACTTGCATGTCCT+AGG | + | chr4_4:62315101-62315120 | Msa0693410:CDS | 50.0% | |
| TGCACTTGCATGTCCTAGGT+GGG | + | chr4_4:62315105-62315124 | Msa0693410:CDS | 50.0% | |
| AGACAGATGAATTGGCCACC+TGG | + | chr4_4:62315128-62315147 | Msa0693410:CDS | 50.0% | |
| GAAAGGAACCGTAGCTGCCA+TGG | - | chr4_4:62312880-62312899 | None:intergenic | 55.0% | |
| !! | TTTGTGGCGCTGGCGCTAAA+AGG | - | chr4_4:62314091-62314110 | None:intergenic | 55.0% |
| GACCAATGTTGGAAGGCCTG+AGG | + | chr4_4:62314413-62314432 | Msa0693410:intron | 55.0% | |
| CACCTCAGGCCTTCCAACAT+TGG | - | chr4_4:62314418-62314437 | None:intergenic | 55.0% | |
| AGAACATGAACCGGAGCCTG+TGG | - | chr4_4:62314582-62314601 | None:intergenic | 55.0% | |
| ACAGGCTCCGGTTCATGTTC+TGG | + | chr4_4:62314581-62314600 | Msa0693410:CDS | 55.0% | |
| GCAGGCTGATGCTAGACATG+GGG | + | chr4_4:62314867-62314886 | Msa0693410:intron | 55.0% | |
| CTGCACTTGCATGTCCTAGG+TGG | + | chr4_4:62315104-62315123 | Msa0693410:CDS | 55.0% | |
| GGACATCAGTCCACAGGCTC+CGG | + | chr4_4:62314569-62314588 | Msa0693410:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 62312815 | 62315425 | 62312815 | ID=Msa0693410;Name=Msa0693410 |
| chr4_4 | mRNA | 62312815 | 62315425 | 62312815 | ID=Msa0693410-mRNA-1;Parent=Msa0693410;Name=Msa0693410-mRNA-1;_AED=0.03;_eAED=0.03;_QI=64|0.83|0.85|1|0.83|0.71|7|251|189 |
| chr4_4 | exon | 62312815 | 62312910 | 62312815 | ID=Msa0693410-mRNA-1:exon:17416;Parent=Msa0693410-mRNA-1 |
| chr4_4 | exon | 62312988 | 62313080 | 62312988 | ID=Msa0693410-mRNA-1:exon:17417;Parent=Msa0693410-mRNA-1 |
| chr4_4 | exon | 62314084 | 62314170 | 62314084 | ID=Msa0693410-mRNA-1:exon:17418;Parent=Msa0693410-mRNA-1 |
| chr4_4 | exon | 62314497 | 62314668 | 62314497 | ID=Msa0693410-mRNA-1:exon:17419;Parent=Msa0693410-mRNA-1 |
| chr4_4 | exon | 62314871 | 62314988 | 62314871 | ID=Msa0693410-mRNA-1:exon:17420;Parent=Msa0693410-mRNA-1 |
| chr4_4 | exon | 62315087 | 62315251 | 62315087 | ID=Msa0693410-mRNA-1:exon:17421;Parent=Msa0693410-mRNA-1 |
| chr4_4 | exon | 62315272 | 62315425 | 62315272 | ID=Msa0693410-mRNA-1:exon:17422;Parent=Msa0693410-mRNA-1 |
| chr4_4 | five_prime_UTR | 62312815 | 62312878 | 62312815 | ID=Msa0693410-mRNA-1:five_prime_utr;Parent=Msa0693410-mRNA-1 |
| chr4_4 | CDS | 62312879 | 62312910 | 62312879 | ID=Msa0693410-mRNA-1:cds;Parent=Msa0693410-mRNA-1 |
| chr4_4 | CDS | 62312988 | 62313080 | 62312988 | ID=Msa0693410-mRNA-1:cds;Parent=Msa0693410-mRNA-1 |
| chr4_4 | CDS | 62314084 | 62314170 | 62314084 | ID=Msa0693410-mRNA-1:cds;Parent=Msa0693410-mRNA-1 |
| chr4_4 | CDS | 62314497 | 62314668 | 62314497 | ID=Msa0693410-mRNA-1:cds;Parent=Msa0693410-mRNA-1 |
| chr4_4 | CDS | 62314871 | 62314988 | 62314871 | ID=Msa0693410-mRNA-1:cds;Parent=Msa0693410-mRNA-1 |
| chr4_4 | CDS | 62315087 | 62315154 | 62315087 | ID=Msa0693410-mRNA-1:cds;Parent=Msa0693410-mRNA-1 |
| chr4_4 | three_prime_UTR | 62315155 | 62315251 | 62315155 | ID=Msa0693410-mRNA-1:three_prime_utr;Parent=Msa0693410-mRNA-1 |
| chr4_4 | three_prime_UTR | 62315272 | 62315425 | 62315272 | ID=Msa0693410-mRNA-1:three_prime_utr;Parent=Msa0693410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
