AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0087130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0087130 MtrunA17_Chr1g0202861 98.187 331 6 0 266 596 26 356 0.0 681
Msa0087130 MtrunA17_Chr1g0202861 69.805 308 71 4 1 286 42 349 4.81e-146 426
Msa0087130 MtrunA17_Chr1g0202871 82.857 315 54 0 282 596 1 315 0.0 557
Msa0087130 MtrunA17_Chr1g0202871 84.091 308 27 4 1 286 1 308 4.12e-177 503
Msa0087130 MtrunA17_Chr1g0202931 80.000 315 63 0 282 596 1 315 0.0 531
Msa0087130 MtrunA17_Chr1g0202931 70.779 308 68 4 1 286 1 308 4.69e-144 419
Msa0087130 MtrunA17_Chr1g0202891 80.000 315 63 0 282 596 1 315 0.0 531
Msa0087130 MtrunA17_Chr1g0202891 70.779 308 68 5 1 286 1 308 1.23e-143 418
Msa0087130 MtrunA17_Chr8g0386971 69.206 315 97 0 282 596 1 315 1.17e-160 461
Msa0087130 MtrunA17_Chr8g0386971 60.065 308 101 4 1 286 1 308 3.23e-119 356
Msa0087130 MtrunA17_Chr6g0470501 69.381 307 91 1 291 594 37 343 7.48e-154 445
Msa0087130 MtrunA17_Chr6g0470501 58.224 304 102 5 10 288 37 340 8.76e-108 327
Msa0087130 MtrunA17_Chr6g0470321 68.730 307 93 1 291 594 18 324 7.56e-151 437
Msa0087130 MtrunA17_Chr6g0470321 57.616 302 103 5 10 286 18 319 5.68e-107 325
Msa0087130 MtrunA17_Chr1g0182541 58.361 305 127 0 289 593 13 317 4.78e-126 374
Msa0087130 MtrunA17_Chr1g0182541 49.515 309 134 4 8 294 13 321 5.05e-93 288
Msa0087130 MtrunA17_Chr7g0262941 58.497 306 126 1 289 593 13 318 1.65e-124 370
Msa0087130 MtrunA17_Chr7g0262941 47.742 310 139 5 8 294 13 322 6.33e-89 278
Msa0087130 MtrunA17_Chr4g0058731 43.590 312 172 2 289 596 24 335 1.30e-79 254
Msa0087130 MtrunA17_Chr4g0058731 37.282 287 158 5 8 274 24 308 2.20e-49 175
Msa0087130 MtrunA17_Chr8g0388831 43.607 305 168 3 289 589 13 317 4.76e-78 250
Msa0087130 MtrunA17_Chr8g0388831 39.649 285 154 5 8 274 13 297 1.40e-53 186
Msa0087130 MtrunA17_Chr3g0117241 50.000 142 68 1 289 427 13 154 3.58e-38 138
Msa0087130 MtrunA17_Chr3g0117241 42.254 142 68 2 8 135 13 154 1.66e-26 105
Msa0087130 MtrunA17_Chr3g0117251 38.235 170 104 1 428 596 1 170 1.49e-34 129
Msa0087130 MtrunA17_Chr3g0117251 33.621 116 76 1 136 250 1 116 2.09e-14 71.6
Msa0087130 MtrunA17_Chr1g0202911 77.027 74 17 0 314 387 4 77 6.41e-31 115
Msa0087130 MtrunA17_Chr1g0202911 63.514 74 27 0 33 106 4 77 1.76e-25 100
Msa0087130 MtrunA17_Chr6g0481311 35.938 256 146 8 311 556 62 309 1.46e-26 112
Msa0087130 MtrunA17_Chr6g0481311 31.818 220 123 6 29 228 61 273 6.29e-17 83.2
Msa0087130 MtrunA17_Chr6g0466681 27.863 262 175 6 306 566 62 310 1.43e-19 90.5
Msa0087130 MtrunA17_Chr6g0466681 26.818 220 136 5 32 235 69 279 8.87e-13 70.1
Msa0087130 MtrunA17_Chr2g0317921 29.073 313 187 10 312 593 88 396 4.75e-19 89.7
Msa0087130 MtrunA17_Chr2g0317921 29.487 234 127 7 31 230 88 317 1.67e-12 69.7
Msa0087130 MtrunA17_Chr6g0469251 30.233 301 172 12 318 593 14 301 2.69e-15 77.0
Msa0087130 MtrunA17_Chr3g0079561 30.739 257 142 10 361 593 13 257 3.25e-14 73.2
Msa0087130 MtrunA17_Chr3g0131521 27.740 292 150 12 313 566 37 305 1.72e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0087130 AT4G23430.2 70.833 312 90 1 282 592 1 312 1.38e-161 464
Msa0087130 AT4G23430.2 60.450 311 100 5 1 288 1 311 5.87e-122 363
Msa0087130 AT4G23420.1 71.154 312 89 1 282 592 1 312 2.50e-161 464
Msa0087130 AT4G23420.1 60.450 311 100 5 1 288 1 311 2.69e-122 364
Msa0087130 AT4G23420.2 71.154 312 89 1 282 592 1 312 2.50e-161 464
Msa0087130 AT4G23420.2 60.450 311 100 5 1 288 1 311 2.69e-122 364
Msa0087130 AT4G23430.1 70.513 312 89 2 282 592 1 310 5.73e-159 458
Msa0087130 AT4G23430.1 59.807 311 100 6 1 288 1 309 1.20e-118 355
Msa0087130 AT4G23420.3 69.085 317 97 1 277 592 13 329 2.83e-158 456
Msa0087130 AT4G23420.3 59.547 309 102 5 3 288 20 328 3.35e-118 354
Msa0087130 AT4G11410.1 67.937 315 101 0 282 596 1 315 5.76e-156 450
Msa0087130 AT4G11410.1 61.364 308 97 3 1 286 1 308 1.09e-122 365
Msa0087130 AT4G23430.4 68.269 312 88 2 282 592 1 302 6.03e-152 439
Msa0087130 AT4G23430.4 57.556 311 99 6 1 288 1 301 5.85e-112 337
Msa0087130 AT4G23430.3 67.949 312 87 3 282 592 1 300 2.86e-149 432
Msa0087130 AT4G23430.3 56.913 311 99 7 1 288 1 299 1.27e-108 328
Msa0087130 AT4G23420.5 71.374 262 74 1 282 542 1 262 2.63e-133 390
Msa0087130 AT4G23420.5 67.176 262 74 2 1 250 1 262 4.25e-121 359
Msa0087130 AT4G23420.4 74.089 247 63 1 282 527 1 247 1.36e-129 380
Msa0087130 AT4G23420.4 68.421 247 66 2 1 235 1 247 2.69e-115 344
Msa0087130 AT4G11410.2 71.429 245 70 0 282 526 1 245 5.18e-123 363
Msa0087130 AT4G11410.2 69.388 245 64 1 1 234 1 245 4.84e-115 343
Msa0087130 AT5G02540.1 59.283 307 125 0 287 593 10 316 1.37e-120 360
Msa0087130 AT5G02540.1 47.546 326 144 5 6 309 10 330 7.96e-84 265
Msa0087130 AT2G37540.1 55.700 307 136 0 287 593 10 316 2.04e-119 357
Msa0087130 AT2G37540.1 51.953 256 112 1 6 250 10 265 2.52e-87 274
Msa0087130 AT2G37540.2 58.898 236 97 0 287 522 10 245 3.34e-95 292
Msa0087130 AT2G37540.2 54.237 236 97 1 6 230 10 245 1.84e-86 270
Msa0087130 AT4G24050.1 44.231 312 167 4 289 595 13 322 9.01e-80 255
Msa0087130 AT4G24050.1 42.412 257 134 3 8 250 13 269 1.01e-56 194
Msa0087130 AT5G50130.1 45.307 309 165 3 289 593 13 321 2.14e-79 254
Msa0087130 AT5G50130.1 42.248 258 134 4 8 250 13 270 1.56e-54 189
Msa0087130 AT5G50130.8 44.484 281 155 1 314 593 7 287 6.17e-73 236
Msa0087130 AT5G50130.8 41.026 234 126 2 29 250 3 236 1.66e-48 171
Msa0087130 AT5G50130.7 44.681 282 154 2 314 593 7 288 1.93e-72 235
Msa0087130 AT5G50130.7 41.277 235 125 3 29 250 3 237 5.61e-48 170
Msa0087130 AT1G64590.1 43.813 299 165 2 298 593 22 320 5.92e-68 224
Msa0087130 AT1G64590.1 38.267 277 154 4 17 276 22 298 5.08e-45 163
Msa0087130 AT5G50130.2 44.528 265 143 2 289 549 13 277 7.69e-66 218
Msa0087130 AT5G50130.2 42.023 257 135 3 8 250 13 269 3.66e-55 190
Msa0087130 AT5G50130.4 44.737 266 142 3 289 549 13 278 2.66e-65 217
Msa0087130 AT5G50130.4 42.248 258 134 4 8 250 13 270 1.40e-54 188
Msa0087130 AT5G50130.9 47.131 244 126 2 289 529 13 256 1.87e-64 212
Msa0087130 AT5G50130.9 44.872 234 116 2 8 228 13 246 1.20e-55 189
Msa0087130 AT5G50130.3 48.085 235 119 2 289 520 13 247 7.35e-64 211
Msa0087130 AT5G50130.3 45.106 235 115 3 8 228 13 247 5.06e-55 187
Msa0087130 AT4G24050.2 41.481 270 153 3 283 549 7 274 2.59e-63 210
Msa0087130 AT4G24050.2 41.985 262 138 3 8 255 13 274 1.21e-57 195
Msa0087130 AT5G50130.6 43.882 237 131 1 315 549 8 244 4.12e-59 199
Msa0087130 AT5G50130.6 41.026 234 126 2 29 250 3 236 1.40e-48 171
Msa0087130 AT5G50130.5 44.118 238 130 2 315 549 8 245 1.67e-58 197
Msa0087130 AT5G50130.5 41.277 235 125 3 29 250 3 237 5.69e-48 169
Msa0087130 AT4G27760.1 30.719 306 177 9 311 593 58 351 1.26e-28 118
Msa0087130 AT4G27760.1 34.802 227 115 8 29 233 57 272 3.44e-17 84.3
Msa0087130 AT5G53090.1 31.894 301 180 8 311 593 57 350 7.14e-27 113
Msa0087130 AT5G53090.1 33.180 217 120 6 30 228 57 266 1.55e-13 73.2
Msa0087130 AT5G53100.1 31.148 305 180 9 311 593 45 341 1.28e-25 109
Msa0087130 AT5G53100.1 35.160 219 115 7 30 228 45 256 5.20e-13 71.2
Msa0087130 AT5G54190.1 28.296 311 188 10 314 593 96 402 2.62e-23 103
Msa0087130 AT5G54190.1 31.034 232 122 8 33 230 96 323 2.43e-18 88.2
Msa0087130 AT1G03630.2 31.090 312 181 12 312 593 89 396 3.54e-23 102
Msa0087130 AT1G03630.2 33.333 234 117 10 31 230 89 317 8.56e-15 77.0
Msa0087130 AT1G03630.1 31.090 312 181 12 312 593 91 398 3.86e-23 102
Msa0087130 AT1G03630.1 33.333 234 117 10 31 230 91 319 9.83e-15 77.0
Msa0087130 AT5G04070.1 28.956 297 181 9 313 589 61 347 1.63e-22 100
Msa0087130 AT5G04070.1 26.068 234 145 4 32 241 61 290 3.19e-12 68.9
Msa0087130 AT4G09750.1 28.014 282 189 6 285 566 20 287 3.31e-21 95.5
Msa0087130 AT4G09750.1 25.000 248 159 6 4 235 20 256 1.47e-12 69.3
Msa0087130 AT4G27440.2 29.260 311 185 10 314 593 92 398 1.51e-20 94.7
Msa0087130 AT4G27440.2 30.736 231 124 7 33 230 92 319 5.60e-14 74.7
Msa0087130 AT4G27440.1 29.260 311 185 10 314 593 92 398 1.51e-20 94.7
Msa0087130 AT4G27440.1 30.736 231 124 7 33 230 92 319 5.60e-14 74.7
Msa0087130 AT5G15940.3 27.000 300 191 10 313 592 63 354 2.10e-18 87.8
Msa0087130 AT5G15940.3 25.225 222 138 4 32 229 63 280 8.13e-11 64.7
Msa0087130 AT5G15940.2 27.000 300 191 10 313 592 63 354 2.10e-18 87.8
Msa0087130 AT5G15940.2 25.225 222 138 4 32 229 63 280 8.13e-11 64.7
Msa0087130 AT5G15940.1 27.000 300 191 10 313 592 62 353 2.21e-18 87.8
Msa0087130 AT5G15940.1 25.225 222 138 4 32 229 62 279 8.16e-11 64.7
Msa0087130 AT5G54190.2 25.614 285 178 9 339 593 1 281 2.74e-16 80.1
Msa0087130 AT5G15940.4 27.477 222 144 5 313 521 63 280 1.21e-14 75.9
Msa0087130 AT5G15940.4 25.225 222 138 4 32 229 63 280 7.62e-11 64.3

Find 136 sgRNAs with CRISPR-Local

Find 668 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGCGGTGTTCATGTGATTA+TGG 0.226178 1_2:+67943756 Msa0087130:CDS
TTCAGCAAGAAAGGTGTTTC+TGG 0.229466 1_2:+67942519 Msa0087130:CDS
GGTCTCACTGCCATTGTTAC+TGG 0.236378 1_2:+67942594 Msa0087130:CDS
CTGCAGTTCAATGTTGTCTT+TGG 0.239372 1_2:-67944183 None:intergenic
AAGAAATAATGCAGGAATTA+TGG 0.267594 1_2:+67944142 Msa0087130:intron
CGCGGTGTTCATGTGATTAT+GGG 0.273076 1_2:+67943757 Msa0087130:CDS
CTGAGCTTATAGTTAATGTT+TGG 0.274240 1_2:+67947190 Msa0087130:three_prime_UTR
CTGGGATTTCAGCATCAATT+TGG 0.274620 1_2:+67946904 Msa0087130:CDS
GCATCTGAGTATAATTCTTC+TGG 0.288049 1_2:+67943898 Msa0087130:CDS
CTCTTTAAGTATTGCTTCTC+TGG 0.294320 1_2:-67935871 None:intergenic
ACATGGTGTCCATGTGATTA+TGG 0.307075 1_2:+67935818 Msa0087130:CDS
GATTATGGCTGTTAGAAATA+AGG 0.314737 1_2:+67935833 Msa0087130:CDS
TGAGCTTATAGTTAATGTTT+GGG 0.320031 1_2:+67947191 Msa0087130:three_prime_UTR
ACATGGAAGGGACGCTGATT+TGG 0.331121 1_2:+67946871 Msa0087130:CDS
TTCAGCAGGAAAGGGGTATC+TGG 0.332661 1_2:+67935330 Msa0087130:CDS
TTGTATACAGTTACAGCAAA+TGG 0.345777 1_2:+67938399 Msa0087130:intron
CACTAACTCCCTTCACTTGT+GGG 0.347652 1_2:-67946808 None:intergenic
CCAACTTACAAAACATTTCA+AGG 0.364591 1_2:+67938466 Msa0087130:CDS
GGAGTTAGATCTCAGTTCAT+TGG 0.382633 1_2:+67935920 Msa0087130:CDS
CTGTAGTTCGATGTTGTCAT+TGG 0.387818 1_2:-67936678 None:intergenic
ACGCGTGTTCTTGCTTTACA+TGG 0.389431 1_2:+67935801 Msa0087130:CDS
GGAGTTAGATCTTAGCTCAT+TGG 0.400097 1_2:+67943858 Msa0087130:CDS
CCACTAACTCCCTTCACTTG+TGG 0.412556 1_2:-67946809 None:intergenic
CTGATTTGGCAAAGAAACTC+TGG 0.413553 1_2:+67946885 Msa0087130:CDS
TTACCACATACCTATGTGAT+TGG 0.416556 1_2:-67944213 None:intergenic
TGTATACAGTTACAGCAAAT+GGG 0.425806 1_2:+67938400 Msa0087130:intron
TACAGCAAATGGGGTGCATA+TGG 0.428773 1_2:+67938410 Msa0087130:CDS
TACAGCAGATGGGGTGCATA+TGG 0.428773 1_2:+67944703 Msa0087130:CDS
ACAGGAGCATCCAGTGGTAT+TGG 0.435914 1_2:+67935768 Msa0087130:intron
CTCCATCATGATCAGGAAGA+TGG 0.437998 1_2:+67945476 Msa0087130:intron
GCATCCGAATTTAATTCCTC+TGG 0.439216 1_2:+67935960 Msa0087130:CDS
CTGCCGTGTGTCACAAAAGC+AGG 0.443388 1_2:-67942466 None:intergenic
AGATTGGTGACAATTGTTCC+TGG 0.444579 1_2:-67945527 None:intergenic
CCACAAGTGAAGGGAGTTAG+TGG 0.447541 1_2:+67946809 Msa0087130:CDS
TTACATCTTGATCAGGATGA+TGG 0.452961 1_2:+67939084 Msa0087130:intron
CACATTAAATAAAACTAGTA+AGG 0.454137 1_2:-67947136 None:intergenic
ACAGGAGCATCCAGCGGCAT+TGG 0.459677 1_2:+67943706 Msa0087130:intron
CCTTGAGGTGCTTTGTAAGT+TGG 0.463987 1_2:-67944759 None:intergenic
GAAACACCTTTCTTGCTGAA+TGG 0.471111 1_2:-67942516 None:intergenic
AGTCTCAGCGCCAATGCCGC+TGG 0.474761 1_2:-67943716 None:intergenic
AAGACCAGAGGAATTAAATT+CGG 0.474997 1_2:-67935964 None:intergenic
AGATTGGTGGCAATGCCTCC+TGG 0.478554 1_2:-67939135 None:intergenic
GAATTTATGTGTATGAATGT+AGG 0.479989 1_2:-67947168 None:intergenic
ACAAAATTAATGAACAATCA+AGG 0.483699 1_2:+67937260 Msa0087130:CDS
TGTGGCCATTCAGCAGGAAA+GGG 0.484540 1_2:+67935322 Msa0087130:CDS
AAATCTTTGATAATGACATA+TGG 0.484963 1_2:+67947063 Msa0087130:three_prime_UTR
TGCAAATTTGTGAGCTTCTG+AGG 0.489977 1_2:-67937215 None:intergenic
CTCTGCTAAACTTGATGCCA+TGG 0.490137 1_2:+67943837 Msa0087130:CDS
ATAAAATCAATGACGAATCA+AGG 0.490214 1_2:+67944571 Msa0087130:CDS
CAGGTCTAATAAATGTGGTT+GGG 0.491530 1_2:+67946015 Msa0087130:intron
CCTTATACAGTTACAGCAGA+TGG 0.495361 1_2:+67944692 Msa0087130:intron
CGTTGATTGCGCTGTTATGA+CGG 0.496487 1_2:-67939161 None:intergenic
TCATCATGTGGCCATTCAGC+AGG 0.496748 1_2:+67935316 Msa0087130:exon
CACAAATTTGCATATTCTGA+AGG 0.498869 1_2:+67937226 Msa0087130:CDS
TCCATCATGATCAGGAAGAT+GGG 0.501810 1_2:+67945477 Msa0087130:intron
AATTTATGTGTATGAATGTA+GGG 0.504808 1_2:-67947167 None:intergenic
CTTATACAGTTACAGCAGAT+GGG 0.512298 1_2:+67944693 Msa0087130:intron
GCAGGTCTAATAAATGTGGT+TGG 0.514107 1_2:+67946014 Msa0087130:intron
CCACATACCTATGTGATTGG+TGG 0.516243 1_2:-67944210 None:intergenic
TTGTCATTGGAAAGCATGAA+AGG 0.519351 1_2:-67936665 None:intergenic
GATACCCCTTTCCTGCTGAA+TGG 0.522828 1_2:-67935327 None:intergenic
ATGTGGCCATTCAGCAGGAA+AGG 0.530864 1_2:+67935321 Msa0087130:CDS
ATGTGGCCATTCAGCAAGAA+AGG 0.533159 1_2:+67942510 Msa0087130:CDS
ATGTTTCACAAATACCTAAG+TGG 0.533317 1_2:-67936712 None:intergenic
GAGGTGCTTTGTAAGTTGGT+TGG 0.533413 1_2:-67944755 None:intergenic
ATTGCAAATTCTCTTCATCC+AGG 0.533827 1_2:+67939117 Msa0087130:CDS
TTGTCTTTGGACAAACTGAA+AGG 0.538568 1_2:-67944170 None:intergenic
GTAATTGTAAGAAATAATGC+AGG 0.539047 1_2:+67944134 Msa0087130:intron
ACTGCAATTGCAATATATCT+CGG 0.539733 1_2:+67942440 Msa0087130:CDS
CTGCAATTGCAATATATCTC+GGG 0.542693 1_2:+67942441 Msa0087130:CDS
TGATTTGGCAAAGAAACTCT+GGG 0.543852 1_2:+67946886 Msa0087130:CDS
CAGTTTGCGACAAACCACTT+AGG 0.544627 1_2:+67936698 Msa0087130:CDS
GACCTCACTGCTATTGTCAC+TGG 0.545074 1_2:+67935405 Msa0087130:CDS
ATGTCGCCTCAGAGGCTCAC+AGG 0.545694 1_2:+67944520 Msa0087130:CDS
ACTGCAAATTCTCTTCATCC+AGG 0.546611 1_2:+67945509 Msa0087130:CDS
CGTTCACTGCACTGTTATGT+CGG 0.547282 1_2:-67945553 None:intergenic
AGCATTGCACCCACAAGTGA+AGG 0.549189 1_2:+67946799 Msa0087130:CDS
TGTCTTTGGACAAACTGAAA+GGG 0.554943 1_2:-67944169 None:intergenic
AATCAGCGTCCCTTCCATGT+GGG 0.555356 1_2:-67946868 None:intergenic
GCTGTTATGACGGTAAAGAT+TGG 0.556805 1_2:-67939151 None:intergenic
ACACATGGAATCGATGCTAC+TGG 0.558914 1_2:+67942573 Msa0087130:CDS
ACTGTTATGTCGGAAAAGAT+TGG 0.564967 1_2:-67945543 None:intergenic
AAGAAACAATGCAGGAGTCA+TGG 0.567107 1_2:+67936637 Msa0087130:intron
AGTCTCAACTCCAATACCAC+TGG 0.568579 1_2:-67935778 None:intergenic
GAGCTTATAGTTAATGTTTG+GGG 0.570044 1_2:+67947192 Msa0087130:three_prime_UTR
ACAGCTGAAGAAGTTACTCA+TGG 0.574245 1_2:+67935369 Msa0087130:CDS
TGCAACAGGTATAGTAAATG+TGG 0.575815 1_2:+67940219 Msa0087130:intron
TGTCATTGGAAAGCATGAAA+GGG 0.579731 1_2:-67936664 None:intergenic
ACACGCAAAAGTAAGAAAGA+AGG 0.580402 1_2:+67944486 Msa0087130:CDS
CAAAACAACCCCACATGGAA+GGG 0.582561 1_2:+67946859 Msa0087130:CDS
ACTAGCTAGTGAGGTTGTAA+CGG 0.583902 1_2:+67935279 Msa0087130:five_prime_UTR
ACAAAACAACCCCACATGGA+AGG 0.586260 1_2:+67946858 Msa0087130:CDS
AGAGACTGATACGCAATATG+TGG 0.588960 1_2:+67942493 Msa0087130:CDS
TGTCAAAGATACAATACTCA+AGG 0.594611 1_2:+67943807 Msa0087130:CDS
CACAGGTTCGCATATTCTGA+AGG 0.595062 1_2:+67944537 Msa0087130:CDS
CGTCATAACAGCGCAATCAA+CGG 0.595268 1_2:+67939162 Msa0087130:CDS
GCTAGTGAAAGTAAGACTGA+AGG 0.596766 1_2:+67937175 Msa0087130:CDS
GTTATGACGGTAAAGATTGG+TGG 0.600769 1_2:-67939148 None:intergenic
ATCAGCGTCCCTTCCATGTG+GGG 0.601486 1_2:-67946867 None:intergenic
AAATCAGCGTCCCTTCCATG+TGG 0.606536 1_2:-67946869 None:intergenic
TAGTAAGGATCCTATGCAGA+GGG 0.607534 1_2:-67947121 None:intergenic
GTTACTCAAACTAGCTAGTG+AGG 0.609973 1_2:+67935270 Msa0087130:five_prime_UTR
ACAGGTATAGTAAATGTGGT+TGG 0.612281 1_2:+67940223 Msa0087130:intron
TCATGATCAGGAAGATGGGG+TGG 0.613846 1_2:+67945481 Msa0087130:intron
TCTTTGATAATGACATATGG+TGG 0.614329 1_2:+67947066 Msa0087130:three_prime_UTR
CAGTTTGCCACCAATCACAT+AGG 0.614534 1_2:+67944203 Msa0087130:CDS
TCTTACATCAAGATGTTCAG+CGG 0.618040 1_2:-67943925 None:intergenic
TAGCATTGACGAGTAACACT+TGG 0.618614 1_2:-67946946 None:intergenic
TTCTAACAGCCATAATCACA+TGG 0.621462 1_2:-67935827 None:intergenic
GCATTGCACCCACAAGTGAA+GGG 0.624705 1_2:+67946800 Msa0087130:CDS
TGCGAACCTGTGAGCCTCTG+AGG 0.625555 1_2:-67944526 None:intergenic
TGCCGTGTGTCACAAAAGCA+GGG 0.627037 1_2:-67942465 None:intergenic
AAAGAGAGATTATCATCATG+TGG 0.632744 1_2:+67935304 Msa0087130:exon
CCATCATGATCAGGAAGATG+GGG 0.633051 1_2:+67945478 Msa0087130:intron
ACTCGTGTCCTTGCTTTGCG+CGG 0.635714 1_2:+67943739 Msa0087130:CDS
GTGTACAAAACAACCCCACA+TGG 0.637066 1_2:+67946854 Msa0087130:CDS
TTATACAGTTACAGCAGATG+GGG 0.637977 1_2:+67944694 Msa0087130:intron
CCAACTTACAAAGCACCTCA+AGG 0.639596 1_2:+67944759 Msa0087130:CDS
TTATGCAGGTCTAATAAATG+TGG 0.639665 1_2:+67946010 Msa0087130:intron
GTATACAGTTACAGCAAATG+GGG 0.639935 1_2:+67938401 Msa0087130:intron
CTAGTAAGGATCCTATGCAG+AGG 0.640026 1_2:-67947122 None:intergenic
TGAGCTAAGATCTAACTCCA+TGG 0.641141 1_2:-67943854 None:intergenic
CGACATAACAGTGCAGTGAA+CGG 0.644050 1_2:+67945554 Msa0087130:CDS
CATGAACACCGCGCAAAGCA+AGG 0.649556 1_2:-67943747 None:intergenic
AATTGTTAATGTCGCCTCAG+AGG 0.651795 1_2:+67944512 Msa0087130:CDS
ATGGCATCAAGTTTAGCAGA+GGG 0.654356 1_2:-67943835 None:intergenic
TATGGACCAACCAGTAACAA+TGG 0.654679 1_2:-67942604 None:intergenic
GATTATGGGTGTGAGAAACA+TGG 0.655252 1_2:+67943771 Msa0087130:CDS
GTGGCCATTCAGCAGGAAAG+GGG 0.656505 1_2:+67935323 Msa0087130:CDS
ACTGCTGAACAAGTTACACA+TGG 0.658849 1_2:+67942558 Msa0087130:CDS
ATAGATAGATAAATGTGACA+AGG 0.675679 1_2:-67947032 None:intergenic
CATGGCATCAAGTTTAGCAG+AGG 0.683203 1_2:-67943836 None:intergenic
ATGTTAACAGGAGCATCCAG+TGG 0.683391 1_2:+67935762 Msa0087130:intron
GCAAATTCTCTTCATCCAGG+AGG 0.683556 1_2:+67939120 Msa0087130:CDS
GTGATAACAGGAGCATCCAG+CGG 0.698671 1_2:+67943700 Msa0087130:intron
TACCAGTGACAATAGCAGTG+AGG 0.754085 1_2:-67935407 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGAAAAATAAACAAAAA+GGG - chr1_2:67935458-67935477 None:intergenic 10.0%
!! AAAATGAAAAATAAACAAAA+AGG - chr1_2:67935459-67935478 None:intergenic 10.0%
!!! TCTTATTATCAATTTTATTT+AGG + chr1_2:67936027-67936046 Msa0087130:intron 10.0%
!! CAAAATAAATAGTAAATAAA+AGG - chr1_2:67936484-67936503 None:intergenic 10.0%
!! TTAATCATAATATTATTAGA+TGG - chr1_2:67939463-67939482 None:intergenic 10.0%
!! ATCTAATAATATTATGATTA+AGG + chr1_2:67939462-67939481 Msa0087130:intron 10.0%
!!! TCTTTATTTTTATCTTTTAT+TGG + chr1_2:67941785-67941804 Msa0087130:intron 10.0%
!!! CTTTATTTTTATCTTTTATT+GGG + chr1_2:67941786-67941805 Msa0087130:intron 10.0%
!! AAAACATAAACATAAAATTA+GGG - chr1_2:67941825-67941844 None:intergenic 10.0%
!! AAAAACATAAACATAAAATT+AGG - chr1_2:67941826-67941845 None:intergenic 10.0%
!!! TTTTCTTTAATTTCAAAATA+CGG - chr1_2:67942183-67942202 None:intergenic 10.0%
!!! GATAAAATTATAACTTTTTT+TGG + chr1_2:67942259-67942278 Msa0087130:intron 10.0%
!!! AAATGATTAATTACTTATTT+TGG + chr1_2:67942291-67942310 Msa0087130:intron 10.0%
!! AATGTTTATGAATATATTAT+AGG - chr1_2:67942895-67942914 None:intergenic 10.0%
!!! AATAAAAAAACCAATTTTAA+AGG - chr1_2:67945930-67945949 None:intergenic 10.0%
!! TTAAATATTATTTAACCTAT+AGG + chr1_2:67946672-67946691 Msa0087130:intron 10.0%
!! TAATTATTATATGGATATGA+TGG + chr1_2:67935738-67935757 Msa0087130:intron 15.0%
!!! TTTAATTTTAAGTTTCAAAC+AGG + chr1_2:67936076-67936095 Msa0087130:intron 15.0%
!! TATAGATTAAAAACGAAATT+TGG - chr1_2:67936168-67936187 None:intergenic 15.0%
!!! AAGATCATTTTAAATTTGAT+GGG - chr1_2:67936244-67936263 None:intergenic 15.0%
!!! AAAGATCATTTTAAATTTGA+TGG - chr1_2:67936245-67936264 None:intergenic 15.0%
!!! GTAAACATTTTTAAAGATAA+TGG + chr1_2:67936415-67936434 Msa0087130:intron 15.0%
!!! AAACTTCAATTTTATTTTCT+TGG + chr1_2:67937380-67937399 Msa0087130:intron 15.0%
!! AATAATAAATATCATGTAAG+TGG - chr1_2:67938153-67938172 None:intergenic 15.0%
!! ACATGATATTTATTATTGTT+TGG + chr1_2:67938156-67938175 Msa0087130:intron 15.0%
!! TAAATCAAAGATAATTAATG+TGG - chr1_2:67939052-67939071 None:intergenic 15.0%
!! ATTATAGTATTATACTATTC+AGG + chr1_2:67939190-67939209 Msa0087130:intron 15.0%
!! AATAATATTATGATTAAGGT+TGG + chr1_2:67939466-67939485 Msa0087130:intron 15.0%
!! ATAAAACTAATATTGTAGTA+TGG - chr1_2:67939658-67939677 None:intergenic 15.0%
!!! TTTATTGTTGTTATACATTA+TGG - chr1_2:67939946-67939965 None:intergenic 15.0%
!! ATAAAGTAATAATGTATGAA+TGG - chr1_2:67940018-67940037 None:intergenic 15.0%
!!! TTGGTTTATTATTATTTTTG+AGG + chr1_2:67940861-67940880 Msa0087130:intron 15.0%
!!! TATATGTATTTTAAAACTGA+TGG + chr1_2:67941001-67941020 Msa0087130:intron 15.0%
!!! TTCATATTTTACCTTTATAA+AGG + chr1_2:67941087-67941106 Msa0087130:intron 15.0%
!!! TTATTGCCTTTATTTTTTTT+TGG - chr1_2:67941130-67941149 None:intergenic 15.0%
!! AAAAAATAAAGGCAATAATA+AGG + chr1_2:67941132-67941151 Msa0087130:intron 15.0%
!!! TGTTGATTATATTAGTAAAT+TGG - chr1_2:67941664-67941683 None:intergenic 15.0%
!! AAACATAAACATAAAATTAG+GGG - chr1_2:67941824-67941843 None:intergenic 15.0%
!!! TTCAATCAAATCATTTTTAA+AGG - chr1_2:67941894-67941913 None:intergenic 15.0%
!! TATGTTGTAAAATAAATGTT+GGG + chr1_2:67941964-67941983 Msa0087130:intron 15.0%
!! AATAACATCAAATTAGAATT+GGG + chr1_2:67942117-67942136 Msa0087130:intron 15.0%
!! AAGAAAAAGTTTGAATAAAT+AGG + chr1_2:67942196-67942215 Msa0087130:intron 15.0%
!!! TTATTTTTTGAAAGAAGAAA+TGG + chr1_2:67942226-67942245 Msa0087130:intron 15.0%
!!! CTTATTTTATTAAGTTCTTT+AGG + chr1_2:67942920-67942939 Msa0087130:intron 15.0%
!! GTATGCATAAAAAATTATTA+AGG - chr1_2:67943007-67943026 None:intergenic 15.0%
!!! TATATTTTTTATGCAATTTC+TGG - chr1_2:67943056-67943075 None:intergenic 15.0%
!! AAAAAAAAAATTCAGTTGAT+TGG - chr1_2:67944269-67944288 None:intergenic 15.0%
!! AAAATGATGATAATACAAAT+TGG - chr1_2:67945336-67945355 None:intergenic 15.0%
!! AATATAAACAATATTGTTAG+AGG - chr1_2:67946619-67946638 None:intergenic 15.0%
!! CTAACAATATTGTTTATATT+AGG + chr1_2:67946619-67946638 Msa0087130:intron 15.0%
!! TACTAAAAAAAACTTATACA+AGG - chr1_2:67946701-67946720 None:intergenic 15.0%
!! AAAACTACTATTGAACAAAA+GGG - chr1_2:67935491-67935510 None:intergenic 20.0%
!! AAAAACTACTATTGAACAAA+AGG - chr1_2:67935492-67935511 None:intergenic 20.0%
!!! TTTTATGTTGCTAAGTTATT+GGG + chr1_2:67935517-67935536 Msa0087130:intron 20.0%
!! GGCTATGATTAATTATTATA+TGG + chr1_2:67935729-67935748 Msa0087130:intron 20.0%
!! TCAGACATAAATAAATCTAA+TGG - chr1_2:67936917-67936936 None:intergenic 20.0%
!! TTTATGTAATATAATTCCAC+AGG + chr1_2:67937106-67937125 Msa0087130:intron 20.0%
!!! GTTCATTAATTTTGTCAAAA+CGG - chr1_2:67937255-67937274 None:intergenic 20.0%
!! ACAAAATTAATGAACAATCA+AGG + chr1_2:67937260-67937279 Msa0087130:CDS 20.0%
!!! AAAGTTTTTAAAAATGGAAG+AGG + chr1_2:67937320-67937339 Msa0087130:intron 20.0%
!!! GATGAAGAATATATTTGTTA+AGG - chr1_2:67937766-67937785 None:intergenic 20.0%
!!! TACTTGTCGTAAATTTTTTT+TGG + chr1_2:67939340-67939359 Msa0087130:intron 20.0%
!! TCATAATATTATTAGATGGT+GGG - chr1_2:67939459-67939478 None:intergenic 20.0%
!! ATCATAATATTATTAGATGG+TGG - chr1_2:67939460-67939479 None:intergenic 20.0%
!!! TGAATTTTTCAATATTCAGA+GGG - chr1_2:67939500-67939519 None:intergenic 20.0%
!! CAAATAAAATAGTTAGACTT+AGG - chr1_2:67939695-67939714 None:intergenic 20.0%
!! TTTCTTATACTATTAGTGAA+GGG + chr1_2:67939751-67939770 Msa0087130:intron 20.0%
!! TGTCAAAAAAATAAAACGTA+TGG - chr1_2:67939794-67939813 None:intergenic 20.0%
!!! TGTTGATTTTATAAAACGTA+CGG - chr1_2:67939822-67939841 None:intergenic 20.0%
!!! GAAAAAGCAAACAAATTTTA+TGG - chr1_2:67940142-67940161 None:intergenic 20.0%
!!! ATATTTTTCAGACAATAATG+TGG + chr1_2:67940509-67940528 Msa0087130:intron 20.0%
!! AATAAACCAAACAACAAAAA+GGG - chr1_2:67940851-67940870 None:intergenic 20.0%
!! TAATAAACCAAACAACAAAA+AGG - chr1_2:67940852-67940871 None:intergenic 20.0%
!! TAATAAACCAAAGAACAAAA+AGG + chr1_2:67940893-67940912 Msa0087130:intron 20.0%
!! AATAAACCAAAGAACAAAAA+GGG + chr1_2:67940894-67940913 Msa0087130:intron 20.0%
!! ACAAAAAGGGAAATATTATT+AGG + chr1_2:67940907-67940926 Msa0087130:intron 20.0%
!! CTTCTACCAAAAAAAAATAA+AGG + chr1_2:67941121-67941140 Msa0087130:intron 20.0%
!! TATTGACAAAAAAATTGCTT+GGG - chr1_2:67941374-67941393 None:intergenic 20.0%
!! ATATTGACAAAAAAATTGCT+TGG - chr1_2:67941375-67941394 None:intergenic 20.0%
!!! TTTTTTGTCAATATTCATTC+AGG + chr1_2:67941381-67941400 Msa0087130:intron 20.0%
!!! TTTTTGTCAATATTCATTCA+GGG + chr1_2:67941382-67941401 Msa0087130:intron 20.0%
!! AACATAAACATAAAATTAGG+GGG - chr1_2:67941823-67941842 None:intergenic 20.0%
!! CTATGTTGTAAAATAAATGT+TGG + chr1_2:67941963-67941982 Msa0087130:intron 20.0%
!! ATTCTATCTATTGAGATAAA+AGG - chr1_2:67942072-67942091 None:intergenic 20.0%
!! CAATAACATCAAATTAGAAT+TGG + chr1_2:67942116-67942135 Msa0087130:intron 20.0%
!! ATAACATCAAATTAGAATTG+GGG + chr1_2:67942118-67942137 Msa0087130:intron 20.0%
!! GAAATAATTAAGAAAGAAAC+AGG - chr1_2:67942637-67942656 None:intergenic 20.0%
!! TTTCTTAATTATTTCCCAAA+AGG + chr1_2:67942642-67942661 Msa0087130:intron 20.0%
!! TTCTTAATTATTTCCCAAAA+GGG + chr1_2:67942643-67942662 Msa0087130:intron 20.0%
!!! TAAAAAGATTTTCGTGTAAA+CGG - chr1_2:67942802-67942821 None:intergenic 20.0%
!!! AATTTTTTATGCATACCTTT+TGG + chr1_2:67943011-67943030 Msa0087130:intron 20.0%
!!! TCATCAAATGAATTTTCAAA+AGG - chr1_2:67944292-67944311 None:intergenic 20.0%
!!! ATGAATTATTTTAATTACGC+AGG + chr1_2:67944417-67944436 Msa0087130:intron 20.0%
!! AATTGCTTAAAATGTAATCA+AGG - chr1_2:67944627-67944646 None:intergenic 20.0%
!!! TTGATTACATTTTAAGCAAT+TGG + chr1_2:67944626-67944645 Msa0087130:intron 20.0%
!!! GTTTTGGTTGATTAATAAAA+AGG + chr1_2:67944862-67944881 Msa0087130:intron 20.0%
!! ATTAATTCTGATCATATCTT+TGG + chr1_2:67945298-67945317 Msa0087130:intron 20.0%
!!! TTTTTCATTCTTGACTTTTT+GGG + chr1_2:67945366-67945385 Msa0087130:intron 20.0%
!! ATATCAAAGATAGATTAATG+TGG - chr1_2:67945442-67945461 None:intergenic 20.0%
!! TTATTCATGTAAATTCACTT+TGG + chr1_2:67945591-67945610 Msa0087130:intron 20.0%
!! TTATATTCTGTATTTAGTGT+TGG + chr1_2:67945791-67945810 Msa0087130:intron 20.0%
!! TTTAGTGCTATATATTACAA+TGG - chr1_2:67945880-67945899 None:intergenic 20.0%
!! ACTAATACTTTATCTTTCAT+AGG - chr1_2:67946314-67946333 None:intergenic 20.0%
!!! TACTCCAATTTTATTAATGT+AGG + chr1_2:67946754-67946773 Msa0087130:intron 20.0%
!!! ACTCCAATTTTATTAATGTA+GGG + chr1_2:67946755-67946774 Msa0087130:intron 20.0%
!!! AAATCTTTGATAATGACATA+TGG + chr1_2:67947063-67947082 Msa0087130:three_prime_UTR 20.0%
!! AAAAATATGACAGAAAATAG+AGG - chr1_2:67947101-67947120 None:intergenic 20.0%
!! CACATTAAATAAAACTAGTA+AGG - chr1_2:67947139-67947158 None:intergenic 20.0%
!! AATTTATGTGTATGAATGTA+GGG - chr1_2:67947170-67947189 None:intergenic 20.0%
!! CTTTTATGTTGCTAAGTTAT+TGG + chr1_2:67935516-67935535 Msa0087130:intron 25.0%
!!! CAGGAAATCAATTTTAGTTT+TGG - chr1_2:67935634-67935653 None:intergenic 25.0%
!! AATTGATTTCCTGTTGAAAT+TGG + chr1_2:67935641-67935660 Msa0087130:intron 25.0%
! TTAAAAACGTCAACAATGTT+TGG + chr1_2:67936142-67936161 Msa0087130:intron 25.0%
!!! TTACTATTTATTTTGACTCC+TGG + chr1_2:67936489-67936508 Msa0087130:intron 25.0%
! TAACAACTTTAATAGAAACC+AGG - chr1_2:67936510-67936529 None:intergenic 25.0%
! TAATGAACAATCAAGGTAAT+AGG + chr1_2:67937267-67937286 Msa0087130:intron 25.0%
!!! GTGCTGAAAGTTTTTAAAAA+TGG + chr1_2:67937314-67937333 Msa0087130:intron 25.0%
! GTGTGAAAGAGTAATTATAA+CGG + chr1_2:67937357-67937376 Msa0087130:intron 25.0%
!! GTTTTACATCAAAGATTCAT+GGG - chr1_2:67937661-67937680 None:intergenic 25.0%
!! TGTTTTACATCAAAGATTCA+TGG - chr1_2:67937662-67937681 None:intergenic 25.0%
! CATTCATGAATATAACATAG+TGG + chr1_2:67938031-67938050 Msa0087130:intron 25.0%
! TTTAAAAGAGACATTTCAAG+AGG - chr1_2:67938124-67938143 None:intergenic 25.0%
! AATAAATATCATGTAAGTGG+TGG - chr1_2:67938150-67938169 None:intergenic 25.0%
! AACTGTTTCAATTGTAAACA+AGG - chr1_2:67938279-67938298 None:intergenic 25.0%
! TTGTTTACAATTGAAACAGT+TGG + chr1_2:67938278-67938297 Msa0087130:intron 25.0%
! GGAAGCAAACATAATTAAAT+TGG - chr1_2:67938378-67938397 None:intergenic 25.0%
! TTACAAAACATTTCAAGGTA+TGG + chr1_2:67938471-67938490 Msa0087130:intron 25.0%
! TATCTTAATCTCCTATCAAT+TGG + chr1_2:67938793-67938812 Msa0087130:intron 25.0%
! AGCTGATGTTTAACAATATT+TGG - chr1_2:67938851-67938870 None:intergenic 25.0%
!! TTATTTGTTACATCTTGATC+AGG + chr1_2:67939077-67939096 Msa0087130:intron 25.0%
!!! TTGTCGTAAATTTTTTTTGG+TGG + chr1_2:67939343-67939362 Msa0087130:intron 25.0%
!! TAGGTGTTTTATCCTATATT+TGG + chr1_2:67939414-67939433 Msa0087130:intron 25.0%
! CAATATCATGTACCAAATAT+AGG - chr1_2:67939429-67939448 None:intergenic 25.0%
!!! AATTTTTCAATATTCAGAGG+GGG - chr1_2:67939498-67939517 None:intergenic 25.0%
!!! GAATTTTTCAATATTCAGAG+GGG - chr1_2:67939499-67939518 None:intergenic 25.0%
!!! CTGAATTTTTCAATATTCAG+AGG - chr1_2:67939501-67939520 None:intergenic 25.0%
!!! CTTTTAAGCTTTAACATCAT+CGG + chr1_2:67939577-67939596 Msa0087130:intron 25.0%
! AACTAATATTGTAGTATGGA+GGG - chr1_2:67939654-67939673 None:intergenic 25.0%
! AAACTAATATTGTAGTATGG+AGG - chr1_2:67939655-67939674 None:intergenic 25.0%
! CTTTCTTATACTATTAGTGA+AGG + chr1_2:67939750-67939769 Msa0087130:intron 25.0%
! AGTAATTTATAGCACTTGAT+TGG + chr1_2:67939907-67939926 Msa0087130:intron 25.0%
! TAATAATGTATGAATGGTTG+GGG - chr1_2:67940012-67940031 None:intergenic 25.0%
! GTAATAATGTATGAATGGTT+GGG - chr1_2:67940013-67940032 None:intergenic 25.0%
! AGTAATAATGTATGAATGGT+TGG - chr1_2:67940014-67940033 None:intergenic 25.0%
!!! TACCATTGATGATTTTGAAT+TGG + chr1_2:67940070-67940089 Msa0087130:intron 25.0%
!!! ACCATTGATGATTTTGAATT+GGG + chr1_2:67940071-67940090 Msa0087130:intron 25.0%
! ACCTACTATTTATAAATGTG+AGG + chr1_2:67940293-67940312 Msa0087130:intron 25.0%
! CCTACTATTTATAAATGTGA+GGG + chr1_2:67940294-67940313 Msa0087130:intron 25.0%
! CTACTATTTATAAATGTGAG+GGG + chr1_2:67940295-67940314 Msa0087130:intron 25.0%
! AGCTAAGAAAAGTGAAATAT+CGG - chr1_2:67940387-67940406 None:intergenic 25.0%
! TTTCATTCTTATACAACACT+TGG - chr1_2:67940623-67940642 None:intergenic 25.0%
! ATTGTAATTCAGCATGAAAT+AGG + chr1_2:67940759-67940778 Msa0087130:intron 25.0%
! TTGTAATTCAGCATGAAATA+GGG + chr1_2:67940760-67940779 Msa0087130:intron 25.0%
!! AATATTGAGTTTGATTTAGG+AGG - chr1_2:67940827-67940846 None:intergenic 25.0%
!! ATATTTCCCTTTTTGTTCTT+TGG - chr1_2:67940903-67940922 None:intergenic 25.0%
! CCTTATTAATGCCTTTATAA+AGG - chr1_2:67941101-67941120 None:intergenic 25.0%
!!! CCTTTATAAAGGCATTAATA+AGG + chr1_2:67941098-67941117 Msa0087130:intron 25.0%
!! TTTTGTCAATATTCATTCAG+GGG + chr1_2:67941383-67941402 Msa0087130:intron 25.0%
!! TAAATTGGCTTAACTAACAA+AGG - chr1_2:67941649-67941668 None:intergenic 25.0%
! ATTGAAGTAGATACTAAATG+AGG - chr1_2:67942049-67942068 None:intergenic 25.0%
! TACTATATATCTGGATGATA+TGG - chr1_2:67942396-67942415 None:intergenic 25.0%
! TAAAAAGATGATCGTGTAAA+CGG + chr1_2:67942751-67942770 Msa0087130:intron 25.0%
! CAAAATTGTATTCAACCAAA+AGG - chr1_2:67943029-67943048 None:intergenic 25.0%
! AATTGGATAGAGTCAAATAT+GGG - chr1_2:67943171-67943190 None:intergenic 25.0%
! AAATTGGATAGAGTCAAATA+TGG - chr1_2:67943172-67943191 None:intergenic 25.0%
!! TATTCTGAACAATTCGTTTT+TGG + chr1_2:67943314-67943333 Msa0087130:intron 25.0%
!!! ATTCTGAACAATTCGTTTTT+GGG + chr1_2:67943315-67943334 Msa0087130:intron 25.0%
!!! ATCCATAAGGTTTTTGAAAA+TGG + chr1_2:67943503-67943522 Msa0087130:intron 25.0%
!! AACCATTTTCAAAAACCTTA+TGG - chr1_2:67943508-67943527 None:intergenic 25.0%
! GTAATTGTAAGAAATAATGC+AGG + chr1_2:67944134-67944153 Msa0087130:intron 25.0%
! AAGAAATAATGCAGGAATTA+TGG + chr1_2:67944142-67944161 Msa0087130:intron 25.0%
!!! AATGTTACTGTTTTATTCTC+CGG + chr1_2:67944235-67944254 Msa0087130:intron 25.0%
!!! CGTCATTGATTTTATCAAAA+CGG - chr1_2:67944566-67944585 None:intergenic 25.0%
! ATAAAATCAATGACGAATCA+AGG + chr1_2:67944571-67944590 Msa0087130:CDS 25.0%
! TACTTCTACTACATGTTATA+TGG + chr1_2:67944788-67944807 Msa0087130:intron 25.0%
! TTAATAAAAAGGATGTCCTT+AGG + chr1_2:67944873-67944892 Msa0087130:intron 25.0%
! AAATAAGCTGAAAACAACTT+AGG - chr1_2:67945045-67945064 None:intergenic 25.0%
! CTTATTTCCATAAATTCTAC+AGG + chr1_2:67945058-67945077 Msa0087130:intron 25.0%
! AGCTTATGAAAACAACTTAT+AGG + chr1_2:67945083-67945102 Msa0087130:intron 25.0%
!!! CTTTTTCATTCTTGACTTTT+TGG + chr1_2:67945365-67945384 Msa0087130:intron 25.0%
! ATGTTGAATATGAATTATGC+AGG + chr1_2:67945615-67945634 Msa0087130:intron 25.0%
! AGAAAATGTACTCTACATAA+TGG - chr1_2:67945690-67945709 None:intergenic 25.0%
!! TCCTTTACAATAACTTTTGA+TGG + chr1_2:67945731-67945750 Msa0087130:intron 25.0%
! TCCATCAAAAGTTATTGTAA+AGG - chr1_2:67945735-67945754 None:intergenic 25.0%
! CTAAAGCAAATAAGAGTTTA+TGG - chr1_2:67945768-67945787 None:intergenic 25.0%
!! CATAAACTCTTATTTGCTTT+AGG + chr1_2:67945766-67945785 Msa0087130:intron 25.0%
!! CAATGTTGTCAAATAGTTTT+TGG + chr1_2:67946107-67946126 Msa0087130:intron 25.0%
! TTATAATGCACGAATAATCT+CGG + chr1_2:67946161-67946180 Msa0087130:intron 25.0%
! TATTGCATTAACTTTGTGTA+CGG + chr1_2:67946184-67946203 Msa0087130:intron 25.0%
! TAACAACATTCTCTCTTATT+GGG + chr1_2:67946217-67946236 Msa0087130:intron 25.0%
!! TCATATAGATCCCATTATTT+TGG + chr1_2:67946246-67946265 Msa0087130:intron 25.0%
!! CATATAGATCCCATTATTTT+GGG + chr1_2:67946247-67946266 Msa0087130:intron 25.0%
! TTCATAGGATAAATTCATGT+AGG - chr1_2:67946299-67946318 None:intergenic 25.0%
! AAAATAGAGAAGCTTCAAAT+TGG + chr1_2:67946391-67946410 Msa0087130:intron 25.0%
! TTATATTAGGAGAAAACATG+TGG + chr1_2:67946632-67946651 Msa0087130:intron 25.0%
! ATAGATAGATAAATGTGACA+AGG - chr1_2:67947035-67947054 None:intergenic 25.0%
! GAATTTATGTGTATGAATGT+AGG - chr1_2:67947171-67947190 None:intergenic 25.0%
AAAGAGAGATTATCATCATG+TGG + chr1_2:67935304-67935323 Msa0087130:exon 30.0%
AGGGTAAGAAAGAGTAATAA+AGG - chr1_2:67935439-67935458 None:intergenic 30.0%
TTCATCATGGATACATAGTT+AGG + chr1_2:67935562-67935581 Msa0087130:intron 30.0%
GATTATGGCTGTTAGAAATA+AGG + chr1_2:67935833-67935852 Msa0087130:CDS 30.0%
!!! ATGACATCTATTTTTGCTGA+TGG - chr1_2:67935900-67935919 None:intergenic 30.0%
ATCAGCAAAAATAGATGTCA+TGG + chr1_2:67935899-67935918 Msa0087130:CDS 30.0%
AAGACCAGAGGAATTAAATT+CGG - chr1_2:67935967-67935986 None:intergenic 30.0%
TCTTACATCAAGATGTTCAA+TGG - chr1_2:67935990-67936009 None:intergenic 30.0%
TTATTTAGGCAAAACTGCAT+TGG + chr1_2:67936041-67936060 Msa0087130:intron 30.0%
TATTTAGGCAAAACTGCATT+GGG + chr1_2:67936042-67936061 Msa0087130:intron 30.0%
CATAAAAGACTAACTTTCAG+TGG - chr1_2:67936121-67936140 None:intergenic 30.0%
TTAAAGATCATGATCAGTAC+TGG - chr1_2:67936568-67936587 None:intergenic 30.0%
! GTACTGATCATGATCTTTAA+TGG + chr1_2:67936568-67936587 Msa0087130:intron 30.0%
CTGATCTGTTTATTTGTGAT+TGG + chr1_2:67936614-67936633 Msa0087130:intron 30.0%
ATGTTTCACAAATACCTAAG+TGG - chr1_2:67936715-67936734 None:intergenic 30.0%
! TCTCTTGACAAATCTTTTGT+TGG + chr1_2:67937135-67937154 Msa0087130:CDS 30.0%
CACAAATTTGCATATTCTGA+AGG + chr1_2:67937226-67937245 Msa0087130:CDS 30.0%
TTGGCAATCAATGTTACTAT+TGG + chr1_2:67937399-67937418 Msa0087130:intron 30.0%
!! CTATTGGTTTGATTCTGAAA+AGG + chr1_2:67937415-67937434 Msa0087130:intron 30.0%
ACACAGAGATTTATGTGAAT+TGG + chr1_2:67937713-67937732 Msa0087130:intron 30.0%
AGTGATATACATATTGAGCT+CGG - chr1_2:67937815-67937834 None:intergenic 30.0%
TTTCTGTAGTATTTGTCAAC+TGG + chr1_2:67938340-67938359 Msa0087130:intron 30.0%
! TTTGCTGTAACTGTATACAA+AGG - chr1_2:67938399-67938418 None:intergenic 30.0%
TTGTATACAGTTACAGCAAA+TGG + chr1_2:67938399-67938418 Msa0087130:intron 30.0%
TGTATACAGTTACAGCAAAT+GGG + chr1_2:67938400-67938419 Msa0087130:intron 30.0%
! CCTTGAAATGTTTTGTAAGT+TGG - chr1_2:67938469-67938488 None:intergenic 30.0%
CCAACTTACAAAACATTTCA+AGG + chr1_2:67938466-67938485 Msa0087130:CDS 30.0%
TGTTTACTTCTACTATGTAG+TGG + chr1_2:67938496-67938515 Msa0087130:intron 30.0%
TCTCTCATTATTTCAACTTC+TGG + chr1_2:67938571-67938590 Msa0087130:intron 30.0%
! AAATCTGCATATTTCTACTG+TGG + chr1_2:67938644-67938663 Msa0087130:intron 30.0%
AAAACTAGTCACCAATTGAT+AGG - chr1_2:67938807-67938826 None:intergenic 30.0%
! TTGTTAAACATCAGCTTTAG+TGG + chr1_2:67938855-67938874 Msa0087130:intron 30.0%
! ACAGAATGTTTCTATGAGTA+TGG - chr1_2:67938993-67939012 None:intergenic 30.0%
ATTATACAAGTCCTTTGATG+TGG + chr1_2:67939223-67939242 Msa0087130:intron 30.0%
AGAAAGATAGTGTCACATAA+CGG - chr1_2:67939279-67939298 None:intergenic 30.0%
TTATGTGACACTATCTTTCT+TGG + chr1_2:67939279-67939298 Msa0087130:intron 30.0%
!!! TCTTGGTTGCTTCATTTTTT+TGG + chr1_2:67939296-67939315 Msa0087130:intron 30.0%
!! ATTTTTCAATATTCAGAGGG+GGG - chr1_2:67939497-67939516 None:intergenic 30.0%
CGATGATGTTAAAGCTTAAA+AGG - chr1_2:67939579-67939598 None:intergenic 30.0%
! GTTAGACTTAGGAGTATAAT+AGG - chr1_2:67939684-67939703 None:intergenic 30.0%
GTTATACATTATGGATGAGT+TGG - chr1_2:67939937-67939956 None:intergenic 30.0%
! TGACAAAGTATCTAACTTCT+GGG - chr1_2:67939974-67939993 None:intergenic 30.0%
! TTGACAAAGTATCTAACTTC+TGG - chr1_2:67939975-67939994 None:intergenic 30.0%
ACCCAATTCAAAATCATCAA+TGG - chr1_2:67940075-67940094 None:intergenic 30.0%
!! ATTGATGATTTTGAATTGGG+TGG + chr1_2:67940074-67940093 Msa0087130:intron 30.0%
! GCAAACAAATTTTATGGACA+CGG - chr1_2:67940136-67940155 None:intergenic 30.0%
!! TAATGATTTTGACATACCTG+TGG - chr1_2:67940271-67940290 None:intergenic 30.0%
CCCTCACATTTATAAATAGT+AGG - chr1_2:67940297-67940316 None:intergenic 30.0%
GGGTCATGTCAAATAAATAT+CGG + chr1_2:67940315-67940334 Msa0087130:intron 30.0%
ACTTTCTCCTATCTAAATGT+AGG + chr1_2:67940428-67940447 Msa0087130:intron 30.0%
CTTTCTCCTATCTAAATGTA+GGG + chr1_2:67940429-67940448 Msa0087130:intron 30.0%
TTTCTCCTATCTAAATGTAG+GGG + chr1_2:67940430-67940449 Msa0087130:intron 30.0%
! TGATTTGGCTAAGAAACTTT+GGG + chr1_2:67940560-67940579 Msa0087130:intron 30.0%
TTACAAGAGGTCCATATTAA+GGG - chr1_2:67940787-67940806 None:intergenic 30.0%
ATTACAAGAGGTCCATATTA+AGG - chr1_2:67940788-67940807 None:intergenic 30.0%
TAATATGGACCTCTTGTAAT+AGG + chr1_2:67940788-67940807 Msa0087130:intron 30.0%
AATATGGACCTCTTGTAATA+GGG + chr1_2:67940789-67940808 Msa0087130:intron 30.0%
! GGCAATATTGAGTTTGATTT+AGG - chr1_2:67940830-67940849 None:intergenic 30.0%
!!! ATATTGCCCTTTTTGTTGTT+TGG + chr1_2:67940842-67940861 Msa0087130:intron 30.0%
AAAATACTTGTGTGACATTG+TGG + chr1_2:67940972-67940991 Msa0087130:intron 30.0%
AATATGAATATCTACAGTGG+AGG - chr1_2:67941429-67941448 None:intergenic 30.0%
CTGAATATGAATATCTACAG+TGG - chr1_2:67941432-67941451 None:intergenic 30.0%
ATTGAATCACATGCCTAAAA+AGG + chr1_2:67941522-67941541 Msa0087130:intron 30.0%
TTAAACGAGAAGTTCATATG+AGG + chr1_2:67941725-67941744 Msa0087130:intron 30.0%
TAAACGAGAAGTTCATATGA+GGG + chr1_2:67941726-67941745 Msa0087130:intron 30.0%
ACTGCAATTGCAATATATCT+CGG + chr1_2:67942440-67942459 Msa0087130:CDS 30.0%
CTCTGATGTGTAAATTCAAA+CGG + chr1_2:67942724-67942743 Msa0087130:intron 30.0%
! ATCACATAAGCATAGGTTTT+AGG + chr1_2:67943105-67943124 Msa0087130:intron 30.0%
ATTGGATAGAGTCAAATATG+GGG - chr1_2:67943170-67943189 None:intergenic 30.0%
AACACAAAAAAGTGGTATTG+TGG - chr1_2:67943200-67943219 None:intergenic 30.0%
AATAACTTGAGTTTGATTCC+TGG - chr1_2:67943298-67943317 None:intergenic 30.0%
!! TTCTGAACAATTCGTTTTTG+GGG + chr1_2:67943316-67943335 Msa0087130:intron 30.0%
! TTTTTCTCTTTATCTTCTGC+TGG + chr1_2:67943478-67943497 Msa0087130:intron 30.0%
ATATACAGGGTTTCAAATTG+TGG - chr1_2:67943608-67943627 None:intergenic 30.0%
TATATGGACATTGTGATAAC+AGG + chr1_2:67943688-67943707 Msa0087130:intron 30.0%
TGTCAAAGATACAATACTCA+AGG + chr1_2:67943807-67943826 Msa0087130:CDS 30.0%
TATGTTCCAACTTTCAATTG+TGG + chr1_2:67944054-67944073 Msa0087130:intron 30.0%
AAGAAACCACAATTGAAAGT+TGG - chr1_2:67944063-67944082 None:intergenic 30.0%
TACAGTATCGTTTAATGCAA+AGG + chr1_2:67944363-67944382 Msa0087130:intron 30.0%
! TCTCTTGACAAATCTTTTGT+TGG + chr1_2:67937135-67937154 Msa0087130:CDS 30.0%
AAGCTATCCTGTAGAATTTA+TGG - chr1_2:67945068-67945087 None:intergenic 30.0%
ATCATATAAGTGCGTATGTA+TGG - chr1_2:67945183-67945202 None:intergenic 30.0%
GTACATAACAAGCAAAGTTA+AGG - chr1_2:67945254-67945273 None:intergenic 30.0%
TGTGAGTAAATATGTCAGTT+TGG + chr1_2:67945411-67945430 Msa0087130:intron 30.0%
AAATGTACTCTACATAATGG+TGG - chr1_2:67945687-67945706 None:intergenic 30.0%
!! TGAGTTTTATGAATGTTAGC+TGG + chr1_2:67945981-67946000 Msa0087130:intron 30.0%
TTATGCAGGTCTAATAAATG+TGG + chr1_2:67946010-67946029 Msa0087130:intron 30.0%
AGTTAAATCAGTATGTCCTA+TGG + chr1_2:67946068-67946087 Msa0087130:intron 30.0%
TCTCTGACATTTATAACCAT+AGG - chr1_2:67946087-67946106 None:intergenic 30.0%
CTAACAACATTCTCTCTTAT+TGG + chr1_2:67946216-67946235 Msa0087130:intron 30.0%
AATTAAAGTGGAAAACGTGA+TGG - chr1_2:67946346-67946365 None:intergenic 30.0%
!! TTTTCATGATGGAATTGCAT+GGG - chr1_2:67946375-67946394 None:intergenic 30.0%
!! ATTTTCATGATGGAATTGCA+TGG - chr1_2:67946376-67946395 None:intergenic 30.0%
! AAGCTTCTCTATTTTCATGA+TGG - chr1_2:67946386-67946405 None:intergenic 30.0%
! TCCTTATTCCAATTGTTGTT+GGG + chr1_2:67946504-67946523 Msa0087130:intron 30.0%
ACTTATACAAGGAATCCTAT+AGG - chr1_2:67946690-67946709 None:intergenic 30.0%
GCTCCCTACATTAATAAAAT+TGG - chr1_2:67946761-67946780 None:intergenic 30.0%
!! TCTTTGATAATGACATATGG+TGG + chr1_2:67947066-67947085 Msa0087130:three_prime_UTR 30.0%
CATGATGAAAAGCTAGTACA+AGG - chr1_2:67935551-67935570 None:intergenic 35.0%
!!! CTTGTACTAGCTTTTCATCA+TGG + chr1_2:67935549-67935568 Msa0087130:intron 35.0%
TTGCATGAATTTGATGTAGC+AGG - chr1_2:67935707-67935726 None:intergenic 35.0%
CTACATCAAATTCATGCAAC+TGG + chr1_2:67935708-67935727 Msa0087130:intron 35.0%
GGATATGATGGTATGTTAAC+AGG + chr1_2:67935750-67935769 Msa0087130:intron 35.0%
TTCTAACAGCCATAATCACA+TGG - chr1_2:67935830-67935849 None:intergenic 35.0%
! CTCTTTAAGTATTGCTTCTC+TGG - chr1_2:67935874-67935893 None:intergenic 35.0%
CTTGATGTAAGAAGAGAAAG+TGG + chr1_2:67935998-67936017 Msa0087130:intron 35.0%
! TTTACAGTGTTGAACCAACT+TGG - chr1_2:67936400-67936419 None:intergenic 35.0%
TAAAAGGCAAAACTGCATCA+GGG - chr1_2:67936468-67936487 None:intergenic 35.0%
ATAAAAGGCAAAACTGCATC+AGG - chr1_2:67936469-67936488 None:intergenic 35.0%
TACTGGAACATAGACATTCA+TGG - chr1_2:67936551-67936570 None:intergenic 35.0%
TCAGAAAACAACACTACTAC+TGG - chr1_2:67936598-67936617 None:intergenic 35.0%
! TGTCATTGGAAAGCATGAAA+GGG - chr1_2:67936667-67936686 None:intergenic 35.0%
! TTGTCATTGGAAAGCATGAA+AGG - chr1_2:67936668-67936687 None:intergenic 35.0%
ATCTTTCCGTGAAAATTGTG+AGG + chr1_2:67936841-67936860 Msa0087130:intron 35.0%
TCTTTCCGTGAAAATTGTGA+GGG + chr1_2:67936842-67936861 Msa0087130:intron 35.0%
ACAAGTCACAGTAGTTTCTA+GGG + chr1_2:67936883-67936902 Msa0087130:intron 35.0%
TCTGTCTCAACTTATATAGC+TGG + chr1_2:67937066-67937085 Msa0087130:intron 35.0%
CTGTCTCAACTTATATAGCT+GGG + chr1_2:67937067-67937086 Msa0087130:intron 35.0%
!!! TTTTAGTTTGCTGTGAGTCT+AGG + chr1_2:67937471-67937490 Msa0087130:intron 35.0%
AAAAGCAAAATCGTATCAGC+AGG - chr1_2:67937531-67937550 None:intergenic 35.0%
! TATTTGTTAAGGTGCTTCCA+TGG - chr1_2:67937755-67937774 None:intergenic 35.0%
ATTTCTTGCAACTCTTGAGT+GGG - chr1_2:67937848-67937867 None:intergenic 35.0%
! GTGTGATCATTTTATGTGTG+AGG - chr1_2:67937896-67937915 None:intergenic 35.0%
GTCAAGCTACTTGAAAATGT+GGG - chr1_2:67938067-67938086 None:intergenic 35.0%
AGTCAAGCTACTTGAAAATG+TGG - chr1_2:67938068-67938087 None:intergenic 35.0%
! GTAGTACTTGTTGAAAGAAG+AGG + chr1_2:67938225-67938244 Msa0087130:intron 35.0%
GTTGCATGAAGAATTAAGAG+TGG + chr1_2:67938310-67938329 Msa0087130:intron 35.0%
GTATACAGTTACAGCAAATG+GGG + chr1_2:67938401-67938420 Msa0087130:intron 35.0%
!! TTTTTCAGAGACCTGAATGA+AGG - chr1_2:67938942-67938961 None:intergenic 35.0%
ATGTGGCAAAACCATCAAAA+GGG - chr1_2:67939035-67939054 None:intergenic 35.0%
AATGTGGCAAAACCATCAAA+AGG - chr1_2:67939036-67939055 None:intergenic 35.0%
TTACATCTTGATCAGGATGA+TGG + chr1_2:67939084-67939103 Msa0087130:intron 35.0%
ATTGCAAATTCTCTTCATCC+AGG + chr1_2:67939117-67939136 Msa0087130:CDS 35.0%
! CATTTAGAATGCCACATCAA+AGG - chr1_2:67939237-67939256 None:intergenic 35.0%
! AAAGCTTAAAAGGTTGATCG+CGG - chr1_2:67939569-67939588 None:intergenic 35.0%
GCTAAAGTGACTAATACTGA+AGG + chr1_2:67939876-67939895 Msa0087130:intron 35.0%
! TTTGAATTGGGTGGTTTTTC+TGG + chr1_2:67940083-67940102 Msa0087130:intron 35.0%
TTCTCCTATCTAAATGTAGG+GGG + chr1_2:67940431-67940450 Msa0087130:intron 35.0%
!! CTGATTTGGCTAAGAAACTT+TGG + chr1_2:67940559-67940578 Msa0087130:intron 35.0%
TTGGGATTTCAGCATGAATT+TGG + chr1_2:67940578-67940597 Msa0087130:intron 35.0%
TTTCAGCATGAATTTGGTCA+AGG + chr1_2:67940584-67940603 Msa0087130:intron 35.0%
TGAAATAGGGTCCCTTAATA+TGG + chr1_2:67940773-67940792 Msa0087130:intron 35.0%
! TAAGTGCATTTAGAGTGAAG+TGG + chr1_2:67940939-67940958 Msa0087130:intron 35.0%
TACAATTACTCAGTCAGTCA+GGG - chr1_2:67941241-67941260 None:intergenic 35.0%
TGTACAACCAATTTAACGCA+CGG - chr1_2:67941327-67941346 None:intergenic 35.0%
AGTGGAGGAAGACAAAAAAT+TGG - chr1_2:67941414-67941433 None:intergenic 35.0%
! CTTACGATGTGTTCCTTTTT+AGG - chr1_2:67941538-67941557 None:intergenic 35.0%
TAATAGAGGCTAGACTTTGA+GGG - chr1_2:67941619-67941638 None:intergenic 35.0%
ACAAAGGTTGAGACTAATAG+AGG - chr1_2:67941633-67941652 None:intergenic 35.0%
CTGCAATTGCAATATATCTC+GGG + chr1_2:67942441-67942460 Msa0087130:CDS 35.0%
!!! AAGGTGTTTCTGGTTTTTCA+TGG + chr1_2:67942529-67942548 Msa0087130:CDS 35.0%
AAAGAAACAGGAAGAGAGTA+TGG - chr1_2:67942625-67942644 None:intergenic 35.0%
! GTTTTGCATCACATAAGCAT+AGG + chr1_2:67943098-67943117 Msa0087130:intron 35.0%
TTGGATAGAGTCAAATATGG+GGG - chr1_2:67943169-67943188 None:intergenic 35.0%
ACAAAAAAGTGGTATTGTGG+AGG - chr1_2:67943197-67943216 None:intergenic 35.0%
!!! ACTTTTTTGTGTTAACCCTC+CGG + chr1_2:67943207-67943226 Msa0087130:intron 35.0%
CAAACATTCCTTACAAACTC+CGG - chr1_2:67943259-67943278 None:intergenic 35.0%
ATTCCTGGTGAAACAATTCT+TGG - chr1_2:67943283-67943302 None:intergenic 35.0%
TATTACACGATCCAAACCAT+TGG - chr1_2:67943346-67943365 None:intergenic 35.0%
!! TATCCCTTTAAAACCACTAG+TGG + chr1_2:67943364-67943383 Msa0087130:intron 35.0%
TTATTTACTACCACCACTAG+TGG - chr1_2:67943380-67943399 None:intergenic 35.0%
! ATGGTTTGTGAATCTAACTG+TGG + chr1_2:67943522-67943541 Msa0087130:intron 35.0%
! TGGTTTGTGAATCTAACTGT+GGG + chr1_2:67943523-67943542 Msa0087130:intron 35.0%
GATGTGTGACTATTGTAATG+CGG + chr1_2:67943665-67943684 Msa0087130:intron 35.0%
GACTATTGTAATGCGGTATA+TGG + chr1_2:67943672-67943691 Msa0087130:intron 35.0%
GCATCTGAGTATAATTCTTC+TGG + chr1_2:67943898-67943917 Msa0087130:CDS 35.0%
TCTTACATCAAGATGTTCAG+CGG - chr1_2:67943928-67943947 None:intergenic 35.0%
TGTCTTTGGACAAACTGAAA+GGG - chr1_2:67944172-67944191 None:intergenic 35.0%
TTGTCTTTGGACAAACTGAA+AGG - chr1_2:67944173-67944192 None:intergenic 35.0%
TTACCACATACCTATGTGAT+TGG - chr1_2:67944216-67944235 None:intergenic 35.0%
ACACGCAAAAGTAAGAAAGA+AGG + chr1_2:67944486-67944505 Msa0087130:CDS 35.0%
CTTATACAGTTACAGCAGAT+GGG + chr1_2:67944693-67944712 Msa0087130:intron 35.0%
TTATACAGTTACAGCAGATG+GGG + chr1_2:67944694-67944713 Msa0087130:intron 35.0%
CCAAAACATTAAGACAAGTG+AGG - chr1_2:67944849-67944868 None:intergenic 35.0%
! CCTCACTTGTCTTAATGTTT+TGG + chr1_2:67944846-67944865 Msa0087130:intron 35.0%
TAAAAAGGATGTCCTTAGGT+AGG + chr1_2:67944877-67944896 Msa0087130:intron 35.0%
AAAGAACACATACCTACCTA+AGG - chr1_2:67944892-67944911 None:intergenic 35.0%
GTCAACTGATAAAAGCTCAA+GGG - chr1_2:67944920-67944939 None:intergenic 35.0%
AGTCAACTGATAAAAGCTCA+AGG - chr1_2:67944921-67944940 None:intergenic 35.0%
!! TTCATTCTTGACTTTTTGGG+TGG + chr1_2:67945369-67945388 Msa0087130:intron 35.0%
ATTACTTCTCCATCATGATC+AGG + chr1_2:67945469-67945488 Msa0087130:intron 35.0%
ACTGTTATGTCGGAAAAGAT+TGG - chr1_2:67945546-67945565 None:intergenic 35.0%
ATATGAATTATGCAGGTCAC+AGG + chr1_2:67945622-67945641 Msa0087130:intron 35.0%
ATTACAATGGTCATTCTGAG+TGG - chr1_2:67945867-67945886 None:intergenic 35.0%
!! CACTCACAAGCCTTTAAAAT+TGG + chr1_2:67945917-67945936 Msa0087130:intron 35.0%
!!! TTAGCTGGTTTGTTTTATGC+AGG + chr1_2:67945996-67946015 Msa0087130:intron 35.0%
CAGGTCTAATAAATGTGGTT+GGG + chr1_2:67946015-67946034 Msa0087130:intron 35.0%
!! TACTGATTTAACTTACCTGC+TGG - chr1_2:67946061-67946080 None:intergenic 35.0%
TAACTTTGTGTACGGAAAGA+AGG + chr1_2:67946192-67946211 Msa0087130:intron 35.0%
AACTTTGTGTACGGAAAGAA+GGG + chr1_2:67946193-67946212 Msa0087130:intron 35.0%
!!! AGATCCCATTATTTTGGGAA+TGG + chr1_2:67946252-67946271 Msa0087130:intron 35.0%
GGATCCATTCCCAAAATAAT+GGG - chr1_2:67946259-67946278 None:intergenic 35.0%
! TAGGTCTCACCATTTTATGT+GGG - chr1_2:67946280-67946299 None:intergenic 35.0%
AAGCTTCAAATTGGAGAGTT+TGG + chr1_2:67946400-67946419 Msa0087130:intron 35.0%
! AGTTTGGAAAAACGTGGTTT+TGG + chr1_2:67946416-67946435 Msa0087130:intron 35.0%
GTCCTTATTCCAATTGTTGT+TGG + chr1_2:67946503-67946522 Msa0087130:intron 35.0%
ACCCAACAACAATTGGAATA+AGG - chr1_2:67946508-67946527 None:intergenic 35.0%
! TGATTTGGCAAAGAAACTCT+GGG + chr1_2:67946886-67946905 Msa0087130:CDS 35.0%
! TCATATTTTTCCCTCTGCAT+AGG + chr1_2:67947111-67947130 Msa0087130:three_prime_UTR 35.0%
GTTACTCAAACTAGCTAGTG+AGG + chr1_2:67935270-67935289 Msa0087130:five_prime_UTR 40.0%
ACTAGCTAGTGAGGTTGTAA+CGG + chr1_2:67935279-67935298 Msa0087130:five_prime_UTR 40.0%
!!! AAGGGGTATCTGGATTTTCA+TGG + chr1_2:67935340-67935359 Msa0087130:CDS 40.0%
ACAGCTGAAGAAGTTACTCA+TGG + chr1_2:67935369-67935388 Msa0087130:CDS 40.0%
TGGATACATAGTTAGGCTTG+AGG + chr1_2:67935569-67935588 Msa0087130:intron 40.0%
CTGACTATGCCAATTTCAAC+AGG - chr1_2:67935653-67935672 None:intergenic 40.0%
CTGTTGAAATTGGCATAGTC+AGG + chr1_2:67935651-67935670 Msa0087130:intron 40.0%
ACATGGTGTCCATGTGATTA+TGG + chr1_2:67935818-67935837 Msa0087130:CDS 40.0%
GGAGTTAGATCTCAGTTCAT+TGG + chr1_2:67935920-67935939 Msa0087130:CDS 40.0%
GCATCCGAATTTAATTCCTC+TGG + chr1_2:67935960-67935979 Msa0087130:CDS 40.0%
TGTAAGAAGAGAAAGTGGCA+TGG + chr1_2:67936003-67936022 Msa0087130:intron 40.0%
!! TTGTAGCCTTGTTGTCAATG+AGG + chr1_2:67936283-67936302 Msa0087130:intron 40.0%
!! TGTAGCCTTGTTGTCAATGA+GGG + chr1_2:67936284-67936303 Msa0087130:intron 40.0%
TTAGACCCTCATTGACAACA+AGG - chr1_2:67936292-67936311 None:intergenic 40.0%
TGTTGTCAATGAGGGTCTAA+TGG + chr1_2:67936292-67936311 Msa0087130:intron 40.0%
AGTGAACTAAGACTCCAAGT+TGG + chr1_2:67936383-67936402 Msa0087130:intron 40.0%
AAAAGGCAAAACTGCATCAG+GGG - chr1_2:67936467-67936486 None:intergenic 40.0%
GTGATTGGAAGAAACAATGC+AGG + chr1_2:67936629-67936648 Msa0087130:intron 40.0%
AAGAAACAATGCAGGAGTCA+TGG + chr1_2:67936637-67936656 Msa0087130:intron 40.0%
CTGTAGTTCGATGTTGTCAT+TGG - chr1_2:67936681-67936700 None:intergenic 40.0%
CACAAGTCACAGTAGTTTCT+AGG + chr1_2:67936882-67936901 Msa0087130:intron 40.0%
TGTCAAGAGAAAATGACCTG+TGG - chr1_2:67937125-67937144 None:intergenic 40.0%
GCTAGTGAAAGTAAGACTGA+AGG + chr1_2:67937175-67937194 Msa0087130:CDS 40.0%
TGCAAATTTGTGAGCTTCTG+AGG - chr1_2:67937218-67937237 None:intergenic 40.0%
TCAGACGCAGTTAGAATTGT+TGG + chr1_2:67937600-67937619 Msa0087130:intron 40.0%
ATCAAAGATTCATGGGTGTG+TGG - chr1_2:67937654-67937673 None:intergenic 40.0%
CATTTCTTGCAACTCTTGAG+TGG - chr1_2:67937849-67937868 None:intergenic 40.0%
!! ACATTCCTCTCTCTAAGACA+TGG + chr1_2:67937918-67937937 Msa0087130:intron 40.0%
CATGTGAAGAGTGGATGTAT+TGG - chr1_2:67937947-67937966 None:intergenic 40.0%
ATCCACTCTTCACATGATCA+AGG + chr1_2:67937951-67937970 Msa0087130:intron 40.0%
AACCTTGATCATGTGAAGAG+TGG - chr1_2:67937956-67937975 None:intergenic 40.0%
ACTCTTCACATGATCAAGGT+TGG + chr1_2:67937955-67937974 Msa0087130:intron 40.0%
CTCTTCACATGATCAAGGTT+GGG + chr1_2:67937956-67937975 Msa0087130:intron 40.0%
TCTTCACATGATCAAGGTTG+GGG + chr1_2:67937957-67937976 Msa0087130:intron 40.0%
TCATCCCGTCCTGTAAATAA+GGG - chr1_2:67938005-67938024 None:intergenic 40.0%
TCTGCAATGTGAACTGTGAA+TGG + chr1_2:67938680-67938699 Msa0087130:intron 40.0%
AGATAGCAGATGCTGCAAAA+AGG - chr1_2:67938778-67938797 None:intergenic 40.0%
AACTAAAGCCTGTTCCAACT+AGG - chr1_2:67938910-67938929 None:intergenic 40.0%
! TTGGAACAGGCTTTAGTTGT+TGG + chr1_2:67938912-67938931 Msa0087130:intron 40.0%
! TTGTTGGTGTTCCTTCATTC+AGG + chr1_2:67938928-67938947 Msa0087130:intron 40.0%
! ACGCAAATTTTGCATCCCTT+TGG + chr1_2:67938963-67938982 Msa0087130:intron 40.0%
! CGCAAATTTTGCATCCCTTT+GGG + chr1_2:67938964-67938983 Msa0087130:intron 40.0%
TATGAGTATGGTTGCCCAAA+GGG - chr1_2:67938981-67939000 None:intergenic 40.0%
GTTATGACGGTAAAGATTGG+TGG - chr1_2:67939151-67939170 None:intergenic 40.0%
GCTGTTATGACGGTAAAGAT+TGG - chr1_2:67939154-67939173 None:intergenic 40.0%
TCATCCATCTACATTGCTCT+AGG + chr1_2:67939395-67939414 Msa0087130:intron 40.0%
AACACCTAGAGCAATGTAGA+TGG - chr1_2:67939402-67939421 None:intergenic 40.0%
!! TGGTTTGTTTGTTTGCTCAC+TGG + chr1_2:67940103-67940122 Msa0087130:intron 40.0%
TGTGATGAAAAACGTTCCAC+AGG + chr1_2:67940252-67940271 Msa0087130:CDS 40.0%
CAATGCTACATAGCATGTTG+TGG - chr1_2:67940460-67940479 None:intergenic 40.0%
CACTAACTCCATTCACTTGT+GGG - chr1_2:67940485-67940504 None:intergenic 40.0%
TGGCCAAATCAAGTTCACAT+GGG + chr1_2:67940529-67940548 Msa0087130:intron 40.0%
CAAATCAAGTTCACATGGGA+GGG + chr1_2:67940533-67940552 Msa0087130:intron 40.0%
TGTTTGGACCCTATTACAAG+AGG - chr1_2:67940800-67940819 None:intergenic 40.0%
CTTGTAATAGGGTCCAAACA+TGG + chr1_2:67940800-67940819 Msa0087130:intron 40.0%
TGATTTAGGAGGTCCATGTT+TGG - chr1_2:67940816-67940835 None:intergenic 40.0%
TTAGAGTGAAGTGGTAGACT+AGG + chr1_2:67940948-67940967 Msa0087130:intron 40.0%
TAGAGTGAAGTGGTAGACTA+GGG + chr1_2:67940949-67940968 Msa0087130:intron 40.0%
CTACAATTACTCAGTCAGTC+AGG - chr1_2:67941242-67941261 None:intergenic 40.0%
AATTTAACGCACGGAAGAGT+TGG - chr1_2:67941318-67941337 None:intergenic 40.0%
AACTCTTCCGTGCGTTAAAT+TGG + chr1_2:67941317-67941336 Msa0087130:intron 40.0%
TCAGTGCGAATTTCGATAGA+TGG - chr1_2:67941497-67941516 None:intergenic 40.0%
CTAATAGAGGCTAGACTTTG+AGG - chr1_2:67941620-67941639 None:intergenic 40.0%
ACGTGACGCTACTATATATC+TGG - chr1_2:67942405-67942424 None:intergenic 40.0%
AGAGACTGATACGCAATATG+TGG + chr1_2:67942493-67942512 Msa0087130:CDS 40.0%
GAAACACCTTTCTTGCTGAA+TGG - chr1_2:67942519-67942538 None:intergenic 40.0%
!! TTCAGCAAGAAAGGTGTTTC+TGG + chr1_2:67942519-67942538 Msa0087130:CDS 40.0%
ACTGCTGAACAAGTTACACA+TGG + chr1_2:67942558-67942577 Msa0087130:CDS 40.0%
TATGGACCAACCAGTAACAA+TGG - chr1_2:67942607-67942626 None:intergenic 40.0%
! GCATGAAGAGATACCCTTTT+GGG - chr1_2:67942659-67942678 None:intergenic 40.0%
! TGCATGAAGAGATACCCTTT+TGG - chr1_2:67942660-67942679 None:intergenic 40.0%
TGGTATTGTGGAGGCTAAAT+TGG - chr1_2:67943188-67943207 None:intergenic 40.0%
GGAGGGTTAACACAAAAAAG+TGG - chr1_2:67943208-67943227 None:intergenic 40.0%
! TTGGTAATCCGGAGTTTGTA+AGG + chr1_2:67943248-67943267 Msa0087130:intron 40.0%
CGGAGTTTGTAAGGAATGTT+TGG + chr1_2:67943257-67943276 Msa0087130:intron 40.0%
!!! CCACCACTAGTGGTTTTAAA+GGG - chr1_2:67943370-67943389 None:intergenic 40.0%
!!! ACCACCACTAGTGGTTTTAA+AGG - chr1_2:67943371-67943390 None:intergenic 40.0%
TCTTCTGCTGGATATCCATA+AGG + chr1_2:67943490-67943509 Msa0087130:intron 40.0%
AGGGTTTCAAATTGTGGTTG+TGG - chr1_2:67943602-67943621 None:intergenic 40.0%
CAGTGTAGCATGCATATACA+GGG - chr1_2:67943621-67943640 None:intergenic 40.0%
TCAGTGTAGCATGCATATAC+AGG - chr1_2:67943622-67943641 None:intergenic 40.0%
GATTATGGGTGTGAGAAACA+TGG + chr1_2:67943771-67943790 Msa0087130:CDS 40.0%
ATGGCATCAAGTTTAGCAGA+GGG - chr1_2:67943838-67943857 None:intergenic 40.0%
TGAGCTAAGATCTAACTCCA+TGG - chr1_2:67943857-67943876 None:intergenic 40.0%
GGAGTTAGATCTTAGCTCAT+TGG + chr1_2:67943858-67943877 Msa0087130:CDS 40.0%
CTGCAGTTCAATGTTGTCTT+TGG - chr1_2:67944186-67944205 None:intergenic 40.0%
CAGTTGATTGGATCTTACTC+CGG - chr1_2:67944257-67944276 None:intergenic 40.0%
AATTGTTAATGTCGCCTCAG+AGG + chr1_2:67944512-67944531 Msa0087130:CDS 40.0%
TCTGCTGTAACTGTATAAGG+AGG - chr1_2:67944692-67944711 None:intergenic 40.0%
CCATCTGCTGTAACTGTATA+AGG - chr1_2:67944695-67944714 None:intergenic 40.0%
CCTTATACAGTTACAGCAGA+TGG + chr1_2:67944692-67944711 Msa0087130:intron 40.0%
GTAGAAGTAAGCATACCTTG+AGG - chr1_2:67944777-67944796 None:intergenic 40.0%
AGACTATAGCATGACCTCTT+TGG + chr1_2:67944972-67944991 Msa0087130:intron 40.0%
AACAGACCATAAAGCCAAAG+AGG - chr1_2:67944989-67945008 None:intergenic 40.0%
!! CTTTGGCTTTATGGTCTGTT+TGG + chr1_2:67944989-67945008 Msa0087130:intron 40.0%
TCCATCATGATCAGGAAGAT+GGG + chr1_2:67945477-67945496 Msa0087130:intron 40.0%
ACTGCAAATTCTCTTCATCC+AGG + chr1_2:67945509-67945528 Msa0087130:CDS 40.0%
! AGATTGGTGACAATTGTTCC+TGG - chr1_2:67945530-67945549 None:intergenic 40.0%
ATTATGCAGGTCACAGGATT+TGG + chr1_2:67945628-67945647 Msa0087130:intron 40.0%
GCAGGTCTAATAAATGTGGT+TGG + chr1_2:67946014-67946033 Msa0087130:intron 40.0%
TGTGATGAAAAATGTCCAGC+AGG + chr1_2:67946043-67946062 Msa0087130:CDS 40.0%
GGGATCCATTCCCAAAATAA+TGG - chr1_2:67946260-67946279 None:intergenic 40.0%
GGAATGGATCCCACATAAAA+TGG + chr1_2:67946268-67946287 Msa0087130:intron 40.0%
! GTAGGTCTCACCATTTTATG+TGG - chr1_2:67946281-67946300 None:intergenic 40.0%
CATGGGAAGTGGAATTAAAG+TGG - chr1_2:67946358-67946377 None:intergenic 40.0%
TTGGAGAGTTTGGAAAAACG+TGG + chr1_2:67946410-67946429 Msa0087130:intron 40.0%
!!! TTGGAAAAACGTGGTTTTGG+TGG + chr1_2:67946419-67946438 Msa0087130:intron 40.0%
!!! TGGAAAAACGTGGTTTTGGT+GGG + chr1_2:67946420-67946439 Msa0087130:intron 40.0%
TAAGTGCCTGTTTGTCATCA+CGG - chr1_2:67946452-67946471 None:intergenic 40.0%
! TGCGATTCTCTTTGTTGTGA+GGG - chr1_2:67946548-67946567 None:intergenic 40.0%
!! CTGATTTGGCAAAGAAACTC+TGG + chr1_2:67946885-67946904 Msa0087130:CDS 40.0%
CTGGGATTTCAGCATCAATT+TGG + chr1_2:67946904-67946923 Msa0087130:CDS 40.0%
!! TAGCATTGACGAGTAACACT+TGG - chr1_2:67946949-67946968 None:intergenic 40.0%
TAGTAAGGATCCTATGCAGA+GGG - chr1_2:67947124-67947143 None:intergenic 40.0%
TACCAGTGACAATAGCAGTG+AGG - chr1_2:67935410-67935429 None:intergenic 45.0%
!! ATGTTAACAGGAGCATCCAG+TGG + chr1_2:67935762-67935781 Msa0087130:intron 45.0%
AGTCTCAACTCCAATACCAC+TGG - chr1_2:67935781-67935800 None:intergenic 45.0%
ACGCGTGTTCTTGCTTTACA+TGG + chr1_2:67935801-67935820 Msa0087130:CDS 45.0%
GATGTTCAATGGAAGACCAG+AGG - chr1_2:67935979-67935998 None:intergenic 45.0%
CAGTTTGCGACAAACCACTT+AGG + chr1_2:67936698-67936717 Msa0087130:CDS 45.0%
TTCCGTGAAAATTGTGAGGG+TGG + chr1_2:67936845-67936864 Msa0087130:intron 45.0%
TCCGTGAAAATTGTGAGGGT+GGG + chr1_2:67936846-67936865 Msa0087130:intron 45.0%
! CAGTAGTTTCTAGGGAGTGA+AGG + chr1_2:67936891-67936910 Msa0087130:intron 45.0%
CAATTCTAACTGCGTCTGAG+TGG - chr1_2:67937599-67937618 None:intergenic 45.0%
! TAAGGTGCTTCCATGGATGT+AGG - chr1_2:67937748-67937767 None:intergenic 45.0%
! GGGATGCTTCAACTTTTCAC+AGG + chr1_2:67937977-67937996 Msa0087130:intron 45.0%
! TCACAGGTCCCCTTATTTAC+AGG + chr1_2:67937993-67938012 Msa0087130:intron 45.0%
! AGGTCCCCTTATTTACAGGA+CGG + chr1_2:67937997-67938016 Msa0087130:intron 45.0%
CATCCCGTCCTGTAAATAAG+GGG - chr1_2:67938004-67938023 None:intergenic 45.0%
CTCATCCCGTCCTGTAAATA+AGG - chr1_2:67938006-67938025 None:intergenic 45.0%
TTCGCAACTAGAACCAACAC+TGG + chr1_2:67938192-67938211 Msa0087130:intron 45.0%
TACAAGAGCAACTCCAGTGT+TGG - chr1_2:67938208-67938227 None:intergenic 45.0%
TACAGCAAATGGGGTGCATA+TGG + chr1_2:67938410-67938429 Msa0087130:CDS 45.0%
TAAAGCCTGTTCCAACTAGG+TGG - chr1_2:67938907-67938926 None:intergenic 45.0%
CTATGAGTATGGTTGCCCAA+AGG - chr1_2:67938982-67939001 None:intergenic 45.0%
GGCAAAACCATCAAAAGGGA+GGG - chr1_2:67939031-67939050 None:intergenic 45.0%
TGGCAAAACCATCAAAAGGG+AGG - chr1_2:67939032-67939051 None:intergenic 45.0%
GCAAATTCTCTTCATCCAGG+AGG + chr1_2:67939120-67939139 Msa0087130:CDS 45.0%
! CGTTGATTGCGCTGTTATGA+CGG - chr1_2:67939164-67939183 None:intergenic 45.0%
CGTCATAACAGCGCAATCAA+CGG + chr1_2:67939162-67939181 Msa0087130:CDS 45.0%
TCTCAGACTCTCAGTGATCA+CGG - chr1_2:67939614-67939633 None:intergenic 45.0%
GAATGGTTGGGGAAGAATAG+TGG - chr1_2:67940001-67940020 None:intergenic 45.0%
CCACTAACTCCATTCACTTG+TGG - chr1_2:67940486-67940505 None:intergenic 45.0%
CCACAAGTGAATGGAGTTAG+TGG + chr1_2:67940483-67940502 Msa0087130:intron 45.0%
GTGGCCAAATCAAGTTCACA+TGG + chr1_2:67940528-67940547 Msa0087130:intron 45.0%
CCTCCCATGTGAACTTGATT+TGG - chr1_2:67940535-67940554 None:intergenic 45.0%
CCAAATCAAGTTCACATGGG+AGG + chr1_2:67940532-67940551 Msa0087130:intron 45.0%
AGGGAGTTGGATTGAAGGAA+TGG - chr1_2:67941222-67941241 None:intergenic 45.0%
ATGTGGCCATTCAGCAAGAA+AGG + chr1_2:67942510-67942529 Msa0087130:CDS 45.0%
ACACATGGAATCGATGCTAC+TGG + chr1_2:67942573-67942592 Msa0087130:CDS 45.0%
TCACTGCCATTGTTACTGGT+TGG + chr1_2:67942598-67942617 Msa0087130:intron 45.0%
TGGCCAAGAATTGTTTCACC+AGG + chr1_2:67943277-67943296 Msa0087130:intron 45.0%
!! TCGTTTTTGGGGAAGTCCAA+TGG + chr1_2:67943327-67943346 Msa0087130:intron 45.0%
TTTGGGGAAGTCCAATGGTT+TGG + chr1_2:67943332-67943351 Msa0087130:intron 45.0%
!! CCCTTTAAAACCACTAGTGG+TGG + chr1_2:67943367-67943386 Msa0087130:intron 45.0%
CGCGGTGTTCATGTGATTAT+GGG + chr1_2:67943757-67943776 Msa0087130:CDS 45.0%
CATGGCATCAAGTTTAGCAG+AGG - chr1_2:67943839-67943858 None:intergenic 45.0%
CTCTGCTAAACTTGATGCCA+TGG + chr1_2:67943837-67943856 Msa0087130:CDS 45.0%
CAGTTTGCCACCAATCACAT+AGG + chr1_2:67944203-67944222 Msa0087130:CDS 45.0%
CCACATACCTATGTGATTGG+TGG - chr1_2:67944213-67944232 None:intergenic 45.0%
CCACCAATCACATAGGTATG+TGG + chr1_2:67944210-67944229 Msa0087130:intron 45.0%
CACAGGTTCGCATATTCTGA+AGG + chr1_2:67944537-67944556 Msa0087130:CDS 45.0%
!! GAGGTGCTTTGTAAGTTGGT+TGG - chr1_2:67944758-67944777 None:intergenic 45.0%
! CCTTGAGGTGCTTTGTAAGT+TGG - chr1_2:67944762-67944781 None:intergenic 45.0%
! CCAACTTACAAAGCACCTCA+AGG + chr1_2:67944759-67944778 Msa0087130:CDS 45.0%
!! GCATGACCTCTTTGGCTTTA+TGG + chr1_2:67944980-67944999 Msa0087130:intron 45.0%
CTCCATCATGATCAGGAAGA+TGG + chr1_2:67945476-67945495 Msa0087130:intron 45.0%
CCATCATGATCAGGAAGATG+GGG + chr1_2:67945478-67945497 Msa0087130:intron 45.0%
CGTTCACTGCACTGTTATGT+CGG - chr1_2:67945556-67945575 None:intergenic 45.0%
CGACATAACAGTGCAGTGAA+CGG + chr1_2:67945554-67945573 Msa0087130:CDS 45.0%
TGGTCATTCTGAGTGGTCAT+TGG - chr1_2:67945860-67945879 None:intergenic 45.0%
TGATGGAATTGCATGGGAAG+TGG - chr1_2:67946369-67946388 None:intergenic 45.0%
TATCCACCGTGATGACAAAC+AGG + chr1_2:67946443-67946462 Msa0087130:intron 45.0%
! CCAATTGTTGTTGGGTCTAG+CGG + chr1_2:67946512-67946531 Msa0087130:intron 45.0%
! CTGCGATTCTCTTTGTTGTG+AGG - chr1_2:67946549-67946568 None:intergenic 45.0%
CACTAACTCCCTTCACTTGT+GGG - chr1_2:67946811-67946830 None:intergenic 45.0%
GTGTACAAAACAACCCCACA+TGG + chr1_2:67946854-67946873 Msa0087130:CDS 45.0%
ACAAAACAACCCCACATGGA+AGG + chr1_2:67946858-67946877 Msa0087130:CDS 45.0%
CAAAACAACCCCACATGGAA+GGG + chr1_2:67946859-67946878 Msa0087130:CDS 45.0%
CTAGTAAGGATCCTATGCAG+AGG - chr1_2:67947125-67947144 None:intergenic 45.0%
!!! ATTTTTTTTTTTTTTTATCA+AGG + chr1_2:67939521-67939540 Msa0087130:intron 5.0%
!! TTTATTAACAAAAAAAATAT+GGG - chr1_2:67942154-67942173 None:intergenic 5.0%
!!! TTTTATTAACAAAAAAAATA+TGG - chr1_2:67942155-67942174 None:intergenic 5.0%
!!! ATAATATTTAAGTTTTTTTT+AGG - chr1_2:67946663-67946682 None:intergenic 5.0%
TCATCATGTGGCCATTCAGC+AGG + chr1_2:67935316-67935335 Msa0087130:exon 50.0%
ATGTGGCCATTCAGCAGGAA+AGG + chr1_2:67935321-67935340 Msa0087130:CDS 50.0%
TGTGGCCATTCAGCAGGAAA+GGG + chr1_2:67935322-67935341 Msa0087130:CDS 50.0%
GATACCCCTTTCCTGCTGAA+TGG - chr1_2:67935330-67935349 None:intergenic 50.0%
!! TTCAGCAGGAAAGGGGTATC+TGG + chr1_2:67935330-67935349 Msa0087130:CDS 50.0%
GACCTCACTGCTATTGTCAC+TGG + chr1_2:67935405-67935424 Msa0087130:CDS 50.0%
!! ACAGGAGCATCCAGTGGTAT+TGG + chr1_2:67935768-67935787 Msa0087130:intron 50.0%
!! GGTCTAATGGTGTTGCTGAG+TGG + chr1_2:67936305-67936324 Msa0087130:intron 50.0%
! CCCCACCCTCACAATTTTCA+CGG - chr1_2:67936850-67936869 None:intergenic 50.0%
CCGTGAAAATTGTGAGGGTG+GGG + chr1_2:67936847-67936866 Msa0087130:intron 50.0%
ATTGTGAGGGTGGGGAACTT+TGG + chr1_2:67936855-67936874 Msa0087130:intron 50.0%
TATGACGTGTGTGTTTGGCG+GGG - chr1_2:67936989-67937008 None:intergenic 50.0%
GTATGACGTGTGTGTTTGGC+GGG - chr1_2:67936990-67937009 None:intergenic 50.0%
CGTATGACGTGTGTGTTTGG+CGG - chr1_2:67936991-67937010 None:intergenic 50.0%
CGCCAAACACACACGTCATA+CGG + chr1_2:67936989-67937008 Msa0087130:intron 50.0%
AGCCGTATGACGTGTGTGTT+TGG - chr1_2:67936994-67937013 None:intergenic 50.0%
GGGTGTGTGGCTAACTTTGA+TGG - chr1_2:67937641-67937660 None:intergenic 50.0%
CTTCCATGGATGTAGGCAAG+AGG - chr1_2:67937741-67937760 None:intergenic 50.0%
GGCAACCATGTCTTAGAGAG+AGG - chr1_2:67937926-67937945 None:intergenic 50.0%
! GGTCCCCTTATTTACAGGAC+GGG + chr1_2:67937998-67938017 Msa0087130:intron 50.0%
TAGGTGGAGTTGGAATGGAG+GGG - chr1_2:67938891-67938910 None:intergenic 50.0%
CTAGGTGGAGTTGGAATGGA+GGG - chr1_2:67938892-67938911 None:intergenic 50.0%
ACTAGGTGGAGTTGGAATGG+AGG - chr1_2:67938893-67938912 None:intergenic 50.0%
CCAACTAGGTGGAGTTGGAA+TGG - chr1_2:67938896-67938915 None:intergenic 50.0%
CCATTCCAACTCCACCTAGT+TGG + chr1_2:67938893-67938912 Msa0087130:intron 50.0%
CTGTTCCAACTAGGTGGAGT+TGG - chr1_2:67938901-67938920 None:intergenic 50.0%
CAACTCCACCTAGTTGGAAC+AGG + chr1_2:67938899-67938918 Msa0087130:intron 50.0%
GCTGCCCCCTACATTTAGAT+AGG - chr1_2:67940438-67940457 None:intergenic 50.0%
GCATTGCACCCACAAGTGAA+TGG + chr1_2:67940474-67940493 Msa0087130:intron 50.0%
! ACATGGGAGGGATGCTGATT+TGG + chr1_2:67940545-67940564 Msa0087130:intron 50.0%
TCCAAAAGAACCCCACTCTG+AGG + chr1_2:67941177-67941196 Msa0087130:intron 50.0%
! TCCTCAGAGTGGGGTTCTTT+TGG - chr1_2:67941181-67941200 None:intergenic 50.0%
TTGTCCTCACTCCTCAGAGT+GGG - chr1_2:67941191-67941210 None:intergenic 50.0%
CAGTCAGGGAGTTGGATTGA+AGG - chr1_2:67941227-67941246 None:intergenic 50.0%
TACTCAGTCAGTCAGGGAGT+TGG - chr1_2:67941235-67941254 None:intergenic 50.0%
! GGGAGCATACATGAACTCGT+TGG + chr1_2:67941984-67942003 Msa0087130:intron 50.0%
!! GTCCCTGCTTTTGTGACACA+CGG + chr1_2:67942463-67942482 Msa0087130:CDS 50.0%
TGCCGTGTGTCACAAAAGCA+GGG - chr1_2:67942468-67942487 None:intergenic 50.0%
GGTCTCACTGCCATTGTTAC+TGG + chr1_2:67942594-67942613 Msa0087130:CDS 50.0%
! GAGAAAGGGGCTTGGTAATC+CGG + chr1_2:67943237-67943256 Msa0087130:intron 50.0%
!! GTGATAACAGGAGCATCCAG+CGG + chr1_2:67943700-67943719 Msa0087130:intron 50.0%
GCGCGGTGTTCATGTGATTA+TGG + chr1_2:67943756-67943775 Msa0087130:CDS 50.0%
TACAGCAGATGGGGTGCATA+TGG + chr1_2:67944703-67944722 Msa0087130:CDS 50.0%
CCCCATCTTCCTGATCATGA+TGG - chr1_2:67945481-67945500 None:intergenic 50.0%
TCATGATCAGGAAGATGGGG+TGG + chr1_2:67945481-67945500 Msa0087130:intron 50.0%
CCGCTAGACCCAACAACAAT+TGG - chr1_2:67946515-67946534 None:intergenic 50.0%
AGCATTGCACCCACAAGTGA+AGG + chr1_2:67940473-67940492 Msa0087130:intron 50.0%
GCATTGCACCCACAAGTGAA+GGG + chr1_2:67940474-67940493 Msa0087130:intron 50.0%
CCACTAACTCCCTTCACTTG+TGG - chr1_2:67946812-67946831 None:intergenic 50.0%
CCACAAGTGAAGGGAGTTAG+TGG + chr1_2:67946809-67946828 Msa0087130:CDS 50.0%
AATCAGCGTCCCTTCCATGT+GGG - chr1_2:67946871-67946890 None:intergenic 50.0%
AAATCAGCGTCCCTTCCATG+TGG - chr1_2:67946872-67946891 None:intergenic 50.0%
! ACATGGAAGGGACGCTGATT+TGG + chr1_2:67946871-67946890 Msa0087130:CDS 50.0%
GTGGCCATTCAGCAGGAAAG+GGG + chr1_2:67935323-67935342 Msa0087130:CDS 55.0%
ATGACGTGTGTGTTTGGCGG+GGG - chr1_2:67936988-67937007 None:intergenic 55.0%
ACTGCGTCTGAGTGGTGCAT+AGG - chr1_2:67937591-67937610 None:intergenic 55.0%
GCACCTCTTGCCTACATCCA+TGG + chr1_2:67937735-67937754 Msa0087130:intron 55.0%
AGGTGGAGTTGGAATGGAGG+GGG - chr1_2:67938890-67938909 None:intergenic 55.0%
! GCAGTCTCCCTCCCTTTTGA+TGG + chr1_2:67939021-67939040 Msa0087130:intron 55.0%
! AGATTGGTGGCAATGCCTCC+TGG - chr1_2:67939138-67939157 None:intergenic 55.0%
TGTCCTCACTCCTCAGAGTG+GGG - chr1_2:67941190-67941209 None:intergenic 55.0%
CTTGTCCTCACTCCTCAGAG+TGG - chr1_2:67941192-67941211 None:intergenic 55.0%
! CTCTGAGGAGTGAGGACAAG+AGG + chr1_2:67941192-67941211 Msa0087130:intron 55.0%
!! AACGCACGGAAGAGTTGGTG+AGG - chr1_2:67941313-67941332 None:intergenic 55.0%
CTGCCGTGTGTCACAAAAGC+AGG - chr1_2:67942469-67942488 None:intergenic 55.0%
GTGTTAACCCTCCGGTTCTC+AGG + chr1_2:67943215-67943234 Msa0087130:intron 55.0%
CCTTTCTCCTGAGAACCGGA+GGG - chr1_2:67943225-67943244 None:intergenic 55.0%
CCTCCGGTTCTCAGGAGAAA+GGG + chr1_2:67943223-67943242 Msa0087130:intron 55.0%
CTCCGGTTCTCAGGAGAAAG+GGG + chr1_2:67943224-67943243 Msa0087130:intron 55.0%
AGCCCCTTTCTCCTGAGAAC+CGG - chr1_2:67943229-67943248 None:intergenic 55.0%
GTTCTCAGGAGAAAGGGGCT+TGG + chr1_2:67943229-67943248 Msa0087130:intron 55.0%
ACTCGTGTCCTTGCTTTGCG+CGG + chr1_2:67943739-67943758 Msa0087130:CDS 55.0%
CATGAACACCGCGCAAAGCA+AGG - chr1_2:67943750-67943769 None:intergenic 55.0%
GTGCCTGTTTGTCATCACGG+TGG - chr1_2:67946449-67946468 None:intergenic 55.0%
ATCAGCGTCCCTTCCATGTG+GGG - chr1_2:67946870-67946889 None:intergenic 55.0%
TGACGTGTGTGTTTGGCGGG+GGG - chr1_2:67936987-67937006 None:intergenic 60.0%
! GAACCCCACTCTGAGGAGTG+AGG + chr1_2:67941184-67941203 Msa0087130:intron 60.0%
CCCTCCGGTTCTCAGGAGAA+AGG + chr1_2:67943222-67943241 Msa0087130:intron 60.0%
CCCTTTCTCCTGAGAACCGG+AGG - chr1_2:67943226-67943245 None:intergenic 60.0%
!! ACAGGAGCATCCAGCGGCAT+TGG + chr1_2:67943706-67943725 Msa0087130:intron 60.0%
ATGTCGCCTCAGAGGCTCAC+AGG + chr1_2:67944520-67944539 Msa0087130:CDS 60.0%
TGCGAACCTGTGAGCCTCTG+AGG - chr1_2:67944529-67944548 None:intergenic 60.0%
TGTGTGTTTGGCGGGGGGAG+GGG - chr1_2:67936982-67937001 None:intergenic 65.0%
GTGTGTGTTTGGCGGGGGGA+GGG - chr1_2:67936983-67937002 None:intergenic 65.0%
AGTCTCAGCGCCAATGCCGC+TGG - chr1_2:67943719-67943738 None:intergenic 65.0%
TGTGTTTGGCGGGGGGAGGG+GGG - chr1_2:67936980-67936999 None:intergenic 70.0%
GTGTGTTTGGCGGGGGGAGG+GGG - chr1_2:67936981-67937000 None:intergenic 70.0%
CGTGTGTGTTTGGCGGGGGG+AGG - chr1_2:67936984-67937003 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 67935226 67947211 67935226 ID=Msa0087130;Name=Msa0087130
chr1_2 mRNA 67935226 67947211 67935226 ID=Msa0087130-mRNA-1;Parent=Msa0087130;Name=Msa0087130-mRNA-1;_AED=0.36;_eAED=0.36;_QI=95|0.85|0.86|1|0.92|0.93|15|271|596
chr1_2 exon 67935226 67935426 67935226 ID=Msa0087130-mRNA-1:exon:23122;Parent=Msa0087130-mRNA-1
chr1_2 exon 67935772 67935981 67935772 ID=Msa0087130-mRNA-1:exon:23123;Parent=Msa0087130-mRNA-1
chr1_2 exon 67936651 67936719 67936651 ID=Msa0087130-mRNA-1:exon:23124;Parent=Msa0087130-mRNA-1
chr1_2 exon 67937128 67937281 67937128 ID=Msa0087130-mRNA-1:exon:23125;Parent=Msa0087130-mRNA-1
chr1_2 exon 67938409 67938487 67938409 ID=Msa0087130-mRNA-1:exon:23126;Parent=Msa0087130-mRNA-1
chr1_2 exon 67939099 67939183 67939099 ID=Msa0087130-mRNA-1:exon:23127;Parent=Msa0087130-mRNA-1
chr1_2 exon 67940227 67940273 67940227 ID=Msa0087130-mRNA-1:exon:23128;Parent=Msa0087130-mRNA-1
chr1_2 exon 67942417 67942615 67942417 ID=Msa0087130-mRNA-1:exon:23129;Parent=Msa0087130-mRNA-1
chr1_2 exon 67943710 67943941 67943710 ID=Msa0087130-mRNA-1:exon:23130;Parent=Msa0087130-mRNA-1
chr1_2 exon 67944145 67944224 67944145 ID=Msa0087130-mRNA-1:exon:23131;Parent=Msa0087130-mRNA-1
chr1_2 exon 67944439 67944592 67944439 ID=Msa0087130-mRNA-1:exon:23132;Parent=Msa0087130-mRNA-1
chr1_2 exon 67944702 67944780 67944702 ID=Msa0087130-mRNA-1:exon:23133;Parent=Msa0087130-mRNA-1
chr1_2 exon 67945491 67945575 67945491 ID=Msa0087130-mRNA-1:exon:23134;Parent=Msa0087130-mRNA-1
chr1_2 exon 67946018 67946064 67946018 ID=Msa0087130-mRNA-1:exon:23135;Parent=Msa0087130-mRNA-1
chr1_2 exon 67946776 67947211 67946776 ID=Msa0087130-mRNA-1:exon:23136;Parent=Msa0087130-mRNA-1
chr1_2 five_prime_UTR 67935226 67935320 67935226 ID=Msa0087130-mRNA-1:five_prime_utr;Parent=Msa0087130-mRNA-1
chr1_2 CDS 67935321 67935426 67935321 ID=Msa0087130-mRNA-1:cds;Parent=Msa0087130-mRNA-1
chr1_2 CDS 67935772 67935981 67935772 ID=Msa0087130-mRNA-1:cds;Parent=Msa0087130-mRNA-1
chr1_2 CDS 67936651 67936719 67936651 ID=Msa0087130-mRNA-1:cds;Parent=Msa0087130-mRNA-1
chr1_2 CDS 67937128 67937281 67937128 ID=Msa0087130-mRNA-1:cds;Parent=Msa0087130-mRNA-1
chr1_2 CDS 67938409 67938487 67938409 ID=Msa0087130-mRNA-1:cds;Parent=Msa0087130-mRNA-1
chr1_2 CDS 67939099 67939183 67939099 ID=Msa0087130-mRNA-1:cds;Parent=Msa0087130-mRNA-1
chr1_2 CDS 67940227 67940273 67940227 ID=Msa0087130-mRNA-1:cds;Parent=Msa0087130-mRNA-1
chr1_2 CDS 67942417 67942615 67942417 ID=Msa0087130-mRNA-1:cds;Parent=Msa0087130-mRNA-1
chr1_2 CDS 67943710 67943941 67943710 ID=Msa0087130-mRNA-1:cds;Parent=Msa0087130-mRNA-1
chr1_2 CDS 67944145 67944224 67944145 ID=Msa0087130-mRNA-1:cds;Parent=Msa0087130-mRNA-1
chr1_2 CDS 67944439 67944592 67944439 ID=Msa0087130-mRNA-1:cds;Parent=Msa0087130-mRNA-1
chr1_2 CDS 67944702 67944780 67944702 ID=Msa0087130-mRNA-1:cds;Parent=Msa0087130-mRNA-1
chr1_2 CDS 67945491 67945575 67945491 ID=Msa0087130-mRNA-1:cds;Parent=Msa0087130-mRNA-1
chr1_2 CDS 67946018 67946064 67946018 ID=Msa0087130-mRNA-1:cds;Parent=Msa0087130-mRNA-1
chr1_2 CDS 67946776 67946940 67946776 ID=Msa0087130-mRNA-1:cds;Parent=Msa0087130-mRNA-1
chr1_2 three_prime_UTR 67946941 67947211 67946941 ID=Msa0087130-mRNA-1:three_prime_utr;Parent=Msa0087130-mRNA-1
Gene Sequence

>Msa0087130

ATGTGGCCATTCAGCAGGAAAGGGGTATCTGGATTTTCATGGAAGTCAACAGCTGAAGAAGTTACTCATGGAATTGATGCAACTGACCTCACTGCTATTGTCACTGGAGCATCCAGTGGTATTGGAGTTGAGACTACGCGTGTTCTTGCTTTACATGGTGTCCATGTGATTATGGCTGTTAGAAATAAGGTTAATGCTAATAATACCAGAGAAGCAATACTTAAAGAGATTCCATCAGCAAAAATAGATGTCATGGAGTTAGATCTCAGTTCATTGGAATCTGTCAAGAAATTTGCATCCGAATTTAATTCCTCTGGAGTCATGGCATGCCCTTTCATGCTTTCCAATGACAACATCGAACTACAGTTTGCGACAAACCACTTAGGTCATTTTCTCTTGACAAATCTTTTGTTGGACACAATGAAGAAAACAGCTAGTGAAAGTAAGACTGAAGGAAGAATTGTTAATGTCTCCTCAGAAGCTCACAAATTTGCATATTCTGAAGGAATCCGTTTTGACAAAATTAATGAACAATCAAGTTACAGCAAATGGGGTGCATATGGACAGTCAAAGCTTGCTAATATTTTACATGCAAACCAACTTACAAAACATTTCAAGGATGATGGTATGAATATCATTGCAAATTCTCTTCATCCAGGAGGCATTGCCACCAATCTTTACCGTCATAACAGCGCAATCAACGGTATAGTAAATGTGGTTGGCAAACTTGTGATGAAAAACGTTCCACAGCGTCACGTCAGTTACAAACAAGCACTGCAATTGCAATATATCTCGGGTCCCTGCTTTTGTGACACACGGCAGAGAAAGAGACTGATACGCAATATGTGGCCATTCAGCAAGAAAGGTGTTTCTGGTTTTTCATGGAACTCAACTGCTGAACAAGTTACACATGGAATCGATGCTACTGGTCTCACTGCCATTGTTACTGGAGCATCCAGCGGCATTGGCGCTGAGACTACTCGTGTCCTTGCTTTGCGCGGTGTTCATGTGATTATGGGTGTGAGAAACATGGTTGCTGCTAAAGATGTCAAAGATACAATACTCAAGGACATTCCCTCTGCTAAACTTGATGCCATGGAGTTAGATCTTAGCTCATTGGACTCTGTCAAGAAATTTGCATCTGAGTATAATTCTTCTGGTCGTCCGCTGAACATCTTGATAAATAATGCAGGAATTATGGCATGCCCTTTCAGTTTGTCCAAAGACAACATTGAACTGCAGTTTGCCACCAATCACATAGGTCATTTTCTCTTGACAAATCTTTTGTTGGATACTATGAAGAAAACGACACGCAAAAGTAAGAAAGAAGGAAGAATTGTTAATGTCGCCTCAGAGGCTCACAGGTTCGCATATTCTGAAGGAATCCGTTTTGATAAAATCAATGACGAATCAAGTTACAGCAGATGGGGTGCATATGGACAGTCAAAACTTGCTAACATTTTACATGCCAACCAACTTACAAAGCACCTCAAGGAAGATGGGGTGGATATTACTGCAAATTCTCTTCATCCAGGAACAATTGTCACCAATCTTTTCCGACATAACAGTGCAGTGAACGGTCTAATAAATGTGGTTGGGAGACTTGTGATGAAAAATGTCCAGCAGGGAGCAGCAACAACATGCTATGTAGCATTGCACCCACAAGTGAAGGGAGTTAGTGGTGAATATTTTTCAGACAGTAATGTGTACAAAACAACCCCACATGGAAGGGACGCTGATTTGGCAAAGAAACTCTGGGATTTCAGCATCAATTTGGTTAAGCAGAAATAG
Protein sequence

>Msa0087130

MWPFSRKGVSGFSWKSTAEEVTHGIDATDLTAIVTGASSGIGVETTRVLALHGVHVIMAVRNKVNANNTREAILKEIPSAKIDVMELDLSSLESVKKFASEFNSSGVMACPFMLSNDNIELQFATNHLGHFLLTNLLLDTMKKTASESKTEGRIVNVSSEAHKFAYSEGIRFDKINEQSSYSKWGAYGQSKLANILHANQLTKHFKDDGMNIIANSLHPGGIATNLYRHNSAINGIVNVVGKLVMKNVPQRHVSYKQALQLQYISGPCFCDTRQRKRLIRNMWPFSKKGVSGFSWNSTAEQVTHGIDATGLTAIVTGASSGIGAETTRVLALRGVHVIMGVRNMVAAKDVKDTILKDIPSAKLDAMELDLSSLDSVKKFASEYNSSGRPLNILINNAGIMACPFSLSKDNIELQFATNHIGHFLLTNLLLDTMKKTTRKSKKEGRIVNVASEAHRFAYSEGIRFDKINDESSYSRWGAYGQSKLANILHANQLTKHLKEDGVDITANSLHPGTIVTNLFRHNSAVNGLINVVGRLVMKNVQQGAATTCYVALHPQVKGVSGEYFSDSNVYKTTPHGRDADLAKKLWDFSINLVKQK*