AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0128070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0128070 MtrunA17_Chr1g0194531 81.655 278 26 5 1 271 1 260 5.01e-156 434
Msa0128070 MtrunA17_Chr7g0260531 29.469 207 125 5 50 250 46 237 6.62e-18 80.9
Msa0128070 MtrunA17_Chr1g0184911 30.622 209 112 8 54 250 61 248 2.13e-16 76.6
Msa0128070 MtrunA17_Chr3g0119841 27.419 248 125 9 50 270 44 263 4.23e-16 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0128070 AT4G01995.1 53.846 247 86 5 21 260 27 252 1.05e-76 234
Msa0128070 AT4G01995.3 57.727 220 73 4 48 260 15 221 8.79e-76 230
Msa0128070 AT4G01995.2 52.841 176 64 2 21 196 27 183 1.43e-50 165
Msa0128070 AT1G64680.1 30.093 216 112 9 51 247 36 231 2.81e-19 85.1
Msa0128070 AT1G03055.1 28.507 221 124 8 46 250 52 254 2.97e-17 79.7

Find 103 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCAGTCACACCTGTGTTTC+TGG 0.163795 1_3:-57714141 None:intergenic
ATTCCAACGCTTTGTTCTAA+TGG 0.234706 1_3:+57711742 Msa0128070:CDS
GCAGAAGATGCAAACCGTTT+TGG 0.270080 1_3:-57711827 None:intergenic
CAATTTGTTTCGCACCAAAT+TGG 0.279978 1_3:+57711969 Msa0128070:CDS
TTGCTAAGGGGACCGCTTAC+CGG 0.287128 1_3:-57711616 None:intergenic
TTTGTTTCCTCCATTCCTTT+TGG 0.289746 1_3:+57713114 Msa0128070:CDS
GAAAATTACCGTAGCTTCTA+TGG 0.292895 1_3:-57712203 None:intergenic
TTCAGGACGGTGTCATCTTC+AGG 0.308272 1_3:-57714068 None:intergenic
TAGCACTTATGTCTTGTTAC+AGG 0.309687 1_3:+57713075 Msa0128070:CDS
GACCTTCTTCAAGGATCATA+TGG 0.328100 1_3:+57713881 Msa0128070:intron
TTAAATTTGCAGTTCAAATT+CGG 0.342169 1_3:+57714029 Msa0128070:intron
GTCTACAGAATTGACTTTGC+AGG 0.348660 1_3:-57713355 None:intergenic
GTTTCGCACCAAATTGGTTC+AGG 0.358197 1_3:+57711975 Msa0128070:CDS
TCTTCTTCTTCATCTTCATC+AGG 0.361445 1_3:+57711802 Msa0128070:CDS
GAACTGAAGGCTTGGGTAAT+GGG 0.361682 1_3:+57714272 Msa0128070:three_prime_UTR
TTAGAACAAAGCGTTGGAAT+TGG 0.365725 1_3:-57711739 None:intergenic
TGTCGAAAGATGCAAGTATC+TGG 0.367315 1_3:+57713507 Msa0128070:CDS
TTTGGTTACCTGAACCAATT+TGG 0.369474 1_3:-57711983 None:intergenic
AAATGCTTCCCTACGAAGAT+TGG 0.373694 1_3:+57714115 Msa0128070:CDS
CTTCCAAGCAAGGCTCCTTC+AGG 0.383691 1_3:-57714085 None:intergenic
TAAATATATTGTTAATTCGT+TGG 0.393843 1_3:+57714363 Msa0128070:three_prime_UTR
CTCCAACTTGTCTTTGAAGA+TGG 0.414710 1_3:+57714250 Msa0128070:three_prime_UTR
TTAAATTTAGACCTTCTTCA+AGG 0.416665 1_3:+57713872 Msa0128070:intron
GCAACTTTGCCTCCACCTAT+AGG 0.420034 1_3:-57713160 None:intergenic
ACAGCTATAATCAGCAAAGT+TGG 0.429629 1_3:-57713925 None:intergenic
TCAAAGAGTGAATACAAGCC+TGG 0.439154 1_3:+57711925 Msa0128070:CDS
AGGCAAAGTTGCCGCTATAA+TGG 0.445748 1_3:+57713171 Msa0128070:CDS
GGAACTGAAGGCTTGGGTAA+TGG 0.446568 1_3:+57714271 Msa0128070:three_prime_UTR
GAAGATGGAACTGAAGGCTT+GGG 0.449488 1_3:+57714265 Msa0128070:three_prime_UTR
AATCTTCGTAGGGAAGCATT+TGG 0.450960 1_3:-57714113 None:intergenic
AACAATATATTTACAGAGAT+GGG 0.452375 1_3:-57714353 None:intergenic
CTTTGCTGATTATAGCTGTC+AGG 0.455452 1_3:+57713929 Msa0128070:CDS
TTAACTCTCCGCGTTTGCTA+AGG 0.456999 1_3:-57711630 None:intergenic
CGTCCTGAAGGAGCCTTGCT+TGG 0.459856 1_3:+57714082 Msa0128070:CDS
TAACAATATATTTACAGAGA+TGG 0.468144 1_3:-57714354 None:intergenic
TTAGTTAAGTTGTTACAGTT+AGG 0.472150 1_3:+57711678 Msa0128070:five_prime_UTR
TCAATTAGTCCGTCATATCC+AGG 0.477685 1_3:-57712136 None:intergenic
AAAATGCTCATAGCTCCTAT+AGG 0.484909 1_3:+57713145 Msa0128070:CDS
TAACTCTCCGCGTTTGCTAA+GGG 0.485236 1_3:-57711629 None:intergenic
GATGGAACCTCATGGAATAG+TGG 0.485415 1_3:+57713384 Msa0128070:CDS
GTCTTTGAAGATGGAACTGA+AGG 0.487373 1_3:+57714259 Msa0128070:three_prime_UTR
TTACTGCACTTACTTGTCAA+TGG 0.489234 1_3:+57713322 Msa0128070:CDS
ACCTTCTTCAAGGATCATAT+GGG 0.499420 1_3:+57713882 Msa0128070:CDS
TTCCATCTTCAAAGACAAGT+TGG 0.500129 1_3:-57714252 None:intergenic
TGAAGATGGAACTGAAGGCT+TGG 0.500254 1_3:+57714264 Msa0128070:three_prime_UTR
CAGCTATAATCAGCAAAGTT+GGG 0.500940 1_3:-57713924 None:intergenic
CGGTGTCATCTTCAGGAAGT+GGG 0.502536 1_3:-57714061 None:intergenic
TACCGTAGCTTCTATGGTAT+CGG 0.506593 1_3:-57712197 None:intergenic
ATCTTCATCAGGACCCAAAA+CGG 0.508312 1_3:+57711813 Msa0128070:CDS
ATGGAACCTCATGGAATAGT+GGG 0.508469 1_3:+57713385 Msa0128070:CDS
GGATGGGACTCGAAGAAACC+TGG 0.509195 1_3:+57712118 Msa0128070:CDS
CAAAGAGTGAATACAAGCCT+GGG 0.509583 1_3:+57711926 Msa0128070:CDS
ACGGTGTCATCTTCAGGAAG+TGG 0.512090 1_3:-57714062 None:intergenic
TTTGGACATGCTTCCAAGCA+AGG 0.516931 1_3:-57714095 None:intergenic
AAGGCGCTAAGTATTGTTGT+TGG 0.517773 1_3:+57711709 Msa0128070:CDS
ATATGTTCATGTCTTTGGGC+AGG 0.520060 1_3:-57714162 None:intergenic
AGGTTAGAAACCAATTAAAC+CGG 0.520338 1_3:+57711597 None:intergenic
ACTTACTTGTCAATGGCTCA+TGG 0.525178 1_3:+57713329 Msa0128070:CDS
TTGGAGCTAGAATGTGCAAA+AGG 0.526094 1_3:-57714233 None:intergenic
TCTACAGAATTGACTTTGCA+GGG 0.526670 1_3:-57713354 None:intergenic
GCGCTAAGTATTGTTGTTGG+CGG 0.530949 1_3:+57711712 Msa0128070:CDS
CTTACTTGTCAATGGCTCAT+GGG 0.539633 1_3:+57713330 Msa0128070:CDS
CTCCGATACCATAGAAGCTA+CGG 0.540098 1_3:+57712195 Msa0128070:CDS
TATGGGAGTTCCATTACTCA+TGG 0.540166 1_3:+57713899 Msa0128070:CDS
CTAGAATGTGCAAAAGGCTG+TGG 0.546342 1_3:-57714227 None:intergenic
TACTATAACAGGAAGTGGGA+TGG 0.548952 1_3:+57712101 Msa0128070:intron
TTATAGAGCTCCAAAAGGAA+TGG 0.549533 1_3:-57713124 None:intergenic
ATTTGGTGCGAAACAAATTG+AGG 0.552877 1_3:-57711966 None:intergenic
TTACAGTTAGGAAGAAATGA+AGG 0.558079 1_3:+57711690 Msa0128070:exon
TCCCATATGATCCTTGAAGA+AGG 0.562632 1_3:-57713883 None:intergenic
AACTCTCCGCGTTTGCTAAG+GGG 0.565073 1_3:-57711628 None:intergenic
CTCATAGCTCCTATAGGTGG+AGG 0.565279 1_3:+57713151 Msa0128070:CDS
TAGTGCCTTTCATCATTAGA+CGG 0.569097 1_3:-57712168 None:intergenic
ATTCCATTAGAACAAAGCGT+TGG 0.570606 1_3:-57711745 None:intergenic
AAAATACTATAACAGGAAGT+GGG 0.571265 1_3:+57712097 Msa0128070:intron
AAGTTGGGCTCCATGAGTAA+TGG 0.572536 1_3:-57713909 None:intergenic
TCGAAGAAACCTGGATATGA+CGG 0.573061 1_3:+57712127 Msa0128070:CDS
ACTATAACAGGAAGTGGGAT+GGG 0.573427 1_3:+57712102 Msa0128070:intron
TGAAGATGACACCGTCCTGA+AGG 0.575565 1_3:+57714070 Msa0128070:CDS
TCTGGAAGCCAATCTTCGTA+GGG 0.579827 1_3:-57714123 None:intergenic
ACCTATCAGATGGAACCTCA+TGG 0.586052 1_3:+57713376 Msa0128070:CDS
AACAAATCATCAATAACCCC+AGG 0.586570 1_3:-57711943 None:intergenic
AGTCATAAACACACAGCGAA+AGG 0.587535 1_3:-57713421 None:intergenic
TCCATGAGGTTCCATCTGAT+AGG 0.590896 1_3:-57713377 None:intergenic
TTCTGGAAGCCAATCTTCGT+AGG 0.598210 1_3:-57714124 None:intergenic
AAAGTTGCCGCTATAATGGT+TGG 0.601706 1_3:+57713175 Msa0128070:CDS
AATTCTGTAGACCTATCAGA+TGG 0.614406 1_3:+57713366 Msa0128070:CDS
TAGAGCTCCAAAAGGAATGG+AGG 0.615600 1_3:-57713121 None:intergenic
TCAAAGATGAATTATCGTTG+TGG 0.625539 1_3:-57714299 None:intergenic
GCTAACCGTCTAATGATGAA+AGG 0.626704 1_3:+57712163 Msa0128070:CDS
ATGCTCATAGCTCCTATAGG+TGG 0.633669 1_3:+57713148 Msa0128070:CDS
CGAAAGATGCAAGTATCTGG+AGG 0.640761 1_3:+57713510 Msa0128070:CDS
GGTGTCATCTTCAGGAAGTG+GGG 0.642463 1_3:-57714060 None:intergenic
AGCGGTCCCCTTAGCAAACG+CGG 0.647659 1_3:+57711622 Msa0128070:five_prime_UTR
CAAGCAAGGCTCCTTCAGGA+CGG 0.652728 1_3:-57714081 None:intergenic
CGGAGAGTTAAAGTGAAGTG+TGG 0.653739 1_3:+57711642 Msa0128070:five_prime_UTR
GTGTCATCTTCAGGAAGTGG+GGG 0.656581 1_3:-57714059 None:intergenic
AAACCAATTAAACCGGTAAG+CGG 0.664148 1_3:+57711604 None:intergenic
AGATTGGCTTCCAGAAACAC+AGG 0.677702 1_3:+57714131 Msa0128070:CDS
AGACTCACCAACCATTATAG+CGG 0.701172 1_3:-57713182 None:intergenic
TGGAACCTCATGGAATAGTG+GGG 0.705163 1_3:+57713386 Msa0128070:CDS
AAAGAGTGAATACAAGCCTG+GGG 0.716715 1_3:+57711927 Msa0128070:CDS
GATCACCCCACTATTCCATG+AGG 0.750720 1_3:-57713391 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACTTAAATAAATGTTTA+AGG - chr1_3:57713292-57713311 None:intergenic 10.0%
!! ATATATGAATATGATTAATG+TGG + chr1_3:57712058-57712077 Msa0128070:intron 15.0%
!! TAAATATATTGTTAATTCGT+TGG + chr1_3:57714363-57714382 Msa0128070:three_prime_UTR 15.0%
!!! GTTTTGATTGAATTTGAATT+AGG + chr1_3:57711885-57711904 Msa0128070:intron 20.0%
!! TATAAATAAGTTAACTGGAA+GGG - chr1_3:57712013-57712032 None:intergenic 20.0%
!! AAAGCTATAAATAAGTTAAC+TGG - chr1_3:57712018-57712037 None:intergenic 20.0%
!!! TTTTAGAAAGAAAGAAAAGA+GGG + chr1_3:57712035-57712054 Msa0128070:intron 20.0%
!! AGATTATCAAACTGTTTATA+AGG + chr1_3:57712412-57712431 Msa0128070:intron 20.0%
!! AAATCCTAAGATGATAAAAA+TGG + chr1_3:57712647-57712666 Msa0128070:intron 20.0%
!!! AGATAAGAATTTGATGTTTT+TGG + chr1_3:57712709-57712728 Msa0128070:intron 20.0%
!!! GATAAGAATTTGATGTTTTT+GGG + chr1_3:57712710-57712729 Msa0128070:intron 20.0%
!!! ATAAGAATTTGATGTTTTTG+GGG + chr1_3:57712711-57712730 Msa0128070:intron 20.0%
!! GAATAAGTAACATTGTATTA+CGG - chr1_3:57712927-57712946 None:intergenic 20.0%
!!! TAATACAATGTTACTTATTC+TGG + chr1_3:57712927-57712946 Msa0128070:intron 20.0%
!! AAGTTTAGAAGAATCATATA+AGG - chr1_3:57713025-57713044 None:intergenic 20.0%
!!! TTTATTTAAGTTTTGAAGCA+AGG + chr1_3:57713298-57713317 Msa0128070:intron 20.0%
!!! TTATTTAAGTTTTGAAGCAA+GGG + chr1_3:57713299-57713318 Msa0128070:intron 20.0%
!! TATGTACTATAAAATGTTGT+AGG + chr1_3:57713480-57713499 Msa0128070:intron 20.0%
!! AAATATTACGTATTCTCTTA+TGG + chr1_3:57713956-57713975 Msa0128070:intron 20.0%
!! ATTTGAACTGCAAATTTAAA+AGG - chr1_3:57714028-57714047 None:intergenic 20.0%
!! TTAAATTTGCAGTTCAAATT+CGG + chr1_3:57714029-57714048 Msa0128070:intron 20.0%
!! AAAAATATGTTCATGTCTTT+GGG - chr1_3:57714169-57714188 None:intergenic 20.0%
!! AACAATATATTTACAGAGAT+GGG - chr1_3:57714356-57714375 None:intergenic 20.0%
!! TAACAATATATTTACAGAGA+TGG - chr1_3:57714357-57714376 None:intergenic 20.0%
!!! ATGTTTTCAATGAATTCATT+CGG - chr1_3:57714417-57714436 None:intergenic 20.0%
!! TTAGTTAAGTTGTTACAGTT+AGG + chr1_3:57711678-57711697 Msa0128070:five_prime_UTR 25.0%
! TTGATTGAATTTGAATTAGG+TGG + chr1_3:57711888-57711907 Msa0128070:intron 25.0%
! TGATTGAATTTGAATTAGGT+GGG + chr1_3:57711889-57711908 Msa0128070:intron 25.0%
! ATAAATAAGTTAACTGGAAG+GGG - chr1_3:57712012-57712031 None:intergenic 25.0%
! CTATAAATAAGTTAACTGGA+AGG - chr1_3:57712014-57712033 None:intergenic 25.0%
!!! CTTTTAGAAAGAAAGAAAAG+AGG + chr1_3:57712034-57712053 Msa0128070:intron 25.0%
! TATGAATATGATTAATGTGG+TGG + chr1_3:57712061-57712080 Msa0128070:intron 25.0%
! ATGAATATGATTAATGTGGT+GGG + chr1_3:57712062-57712081 Msa0128070:intron 25.0%
! GAGTATGAAAATACTATAAC+AGG + chr1_3:57712090-57712109 Msa0128070:intron 25.0%
! AAAATACTATAACAGGAAGT+GGG + chr1_3:57712097-57712116 Msa0128070:intron 25.0%
!!! ATATAAACCTTTTGAAACCA+TGG - chr1_3:57712296-57712315 None:intergenic 25.0%
!! TAAATTTTGTGTGACTGTTT+AGG + chr1_3:57712374-57712393 Msa0128070:intron 25.0%
!!! GTTTCCATTTTTATCATCTT+AGG - chr1_3:57712654-57712673 None:intergenic 25.0%
! TAGTTATCTTTGCGAAAAAA+TGG + chr1_3:57712826-57712845 Msa0128070:intron 25.0%
! TGATTCTTCTAAACTTTGAA+TGG + chr1_3:57713029-57713048 Msa0128070:intron 25.0%
! TCATCTTGTATTATTGAAAG+TGG + chr1_3:57713455-57713474 Msa0128070:intron 25.0%
! TACTAACATGAAAAAACCAA+GGG - chr1_3:57713783-57713802 None:intergenic 25.0%
! ATACTAACATGAAAAAACCA+AGG - chr1_3:57713784-57713803 None:intergenic 25.0%
!!! TTTGAAGTTGTTGCATTTTA+TGG + chr1_3:57713828-57713847 Msa0128070:intron 25.0%
! TTAAATTTAGACCTTCTTCA+AGG + chr1_3:57713872-57713891 Msa0128070:intron 25.0%
! GAGTTCAAATTTATATGATG+AGG + chr1_3:57713978-57713997 Msa0128070:intron 25.0%
! GAAAAATATGTTCATGTCTT+TGG - chr1_3:57714170-57714189 None:intergenic 25.0%
!! AGACATGAACATATTTTTCT+TGG + chr1_3:57714171-57714190 Msa0128070:exon 25.0%
!! GACATGAACATATTTTTCTT+GGG + chr1_3:57714172-57714191 Msa0128070:exon 25.0%
!! TGTTTTCAATGAATTCATTC+GGG - chr1_3:57714416-57714435 None:intergenic 25.0%
!!! TTTTTGAGTTAAGATATCGA+AGG + chr1_3:57714446-57714465 Msa0128070:three_prime_UTR 25.0%
TTACAGTTAGGAAGAAATGA+AGG + chr1_3:57711690-57711709 Msa0128070:exon 30.0%
GAAAATACTATAACAGGAAG+TGG + chr1_3:57712096-57712115 Msa0128070:intron 30.0%
AGCTTTACTTTCTCTTTCTA+AGG - chr1_3:57712603-57712622 None:intergenic 30.0%
! GAAAGAGAAAGTAAAGCTTT+TGG + chr1_3:57712605-57712624 Msa0128070:intron 30.0%
!! TGAAGTGGATTGGAATAAAA+CGG - chr1_3:57712875-57712894 None:intergenic 30.0%
TCAGTTAAAGACAAATCGTT+TGG - chr1_3:57713735-57713754 None:intergenic 30.0%
! AAGTTGTTGCATTTTATGGA+TGG + chr1_3:57713832-57713851 Msa0128070:intron 30.0%
TCAAAGATGAATTATCGTTG+TGG - chr1_3:57714302-57714321 None:intergenic 30.0%
! GTTTTCAATGAATTCATTCG+GGG - chr1_3:57714415-57714434 None:intergenic 30.0%
!! TTAGAACAAAGCGTTGGAAT+TGG - chr1_3:57711742-57711761 None:intergenic 35.0%
! ATTCCAACGCTTTGTTCTAA+TGG + chr1_3:57711742-57711761 Msa0128070:CDS 35.0%
ATTCCATTAGAACAAAGCGT+TGG - chr1_3:57711748-57711767 None:intergenic 35.0%
TCTTCTTCTTCATCTTCATC+AGG + chr1_3:57711802-57711821 Msa0128070:CDS 35.0%
AACAAATCATCAATAACCCC+AGG - chr1_3:57711946-57711965 None:intergenic 35.0%
!! ATTTGGTGCGAAACAAATTG+AGG - chr1_3:57711969-57711988 None:intergenic 35.0%
! CAATTTGTTTCGCACCAAAT+TGG + chr1_3:57711969-57711988 Msa0128070:CDS 35.0%
TTTGGTTACCTGAACCAATT+TGG - chr1_3:57711986-57712005 None:intergenic 35.0%
! AATATGATTAATGTGGTGGG+TGG + chr1_3:57712065-57712084 Msa0128070:intron 35.0%
TAGTGCCTTTCATCATTAGA+CGG - chr1_3:57712171-57712190 None:intergenic 35.0%
GAAAATTACCGTAGCTTCTA+TGG - chr1_3:57712206-57712225 None:intergenic 35.0%
TTCCTTACAAACCAAAACCA+TGG + chr1_3:57712276-57712295 Msa0128070:intron 35.0%
!!! AACCATGGTTTTGGTTTGTA+AGG - chr1_3:57712281-57712300 None:intergenic 35.0%
ACCAAAACCATGGTTTCAAA+AGG + chr1_3:57712286-57712305 Msa0128070:intron 35.0%
!!! ACCTTTTGAAACCATGGTTT+TGG - chr1_3:57712290-57712309 None:intergenic 35.0%
!! AGCTGTTTTCATAAGCTATC+TGG - chr1_3:57712465-57712484 None:intergenic 35.0%
TCATAATAAGCACTTGTGAG+CGG + chr1_3:57712556-57712575 Msa0128070:intron 35.0%
!!! GAATTTGATGTTTTTGGGGA+TGG + chr1_3:57712715-57712734 Msa0128070:intron 35.0%
AACTCTCAAAACCAAAATGG+TGG - chr1_3:57712754-57712773 None:intergenic 35.0%
CCAAACTCTCAAAACCAAAA+TGG - chr1_3:57712757-57712776 None:intergenic 35.0%
!!! CCATTTTGGTTTTGAGAGTT+TGG + chr1_3:57712754-57712773 Msa0128070:intron 35.0%
TTGAGAGTTTGGTATAGATC+AGG + chr1_3:57712765-57712784 Msa0128070:intron 35.0%
TGGTATAGATCAGGTATGTT+TGG + chr1_3:57712774-57712793 Msa0128070:intron 35.0%
GGTATAGATCAGGTATGTTT+GGG + chr1_3:57712775-57712794 Msa0128070:intron 35.0%
TAGAGTTGAATGAAGTGGAT+TGG - chr1_3:57712885-57712904 None:intergenic 35.0%
TGGTATAGAGTTGAATGAAG+TGG - chr1_3:57712890-57712909 None:intergenic 35.0%
ACATTGTATTACGGTATGTC+TGG - chr1_3:57712918-57712937 None:intergenic 35.0%
! TAGCACTTATGTCTTGTTAC+AGG + chr1_3:57713075-57713094 Msa0128070:CDS 35.0%
! TGTTACAGGTACGAATTTTG+AGG + chr1_3:57713089-57713108 Msa0128070:CDS 35.0%
! TTTGTTTCCTCCATTCCTTT+TGG + chr1_3:57713114-57713133 Msa0128070:CDS 35.0%
TTATAGAGCTCCAAAAGGAA+TGG - chr1_3:57713127-57713146 None:intergenic 35.0%
! GCATTTTATAGAGCTCCAAA+AGG - chr1_3:57713132-57713151 None:intergenic 35.0%
AAAATGCTCATAGCTCCTAT+AGG + chr1_3:57713145-57713164 Msa0128070:CDS 35.0%
TTACTGCACTTACTTGTCAA+TGG + chr1_3:57713322-57713341 Msa0128070:CDS 35.0%
! TCTACAGAATTGACTTTGCA+GGG - chr1_3:57713357-57713376 None:intergenic 35.0%
AATTCTGTAGACCTATCAGA+TGG + chr1_3:57713366-57713385 Msa0128070:CDS 35.0%
TTTCAGTCAGGATTTGAACT+CGG + chr1_3:57713703-57713722 Msa0128070:intron 35.0%
ACATGAAAAAACCAAGGGAT+CGG - chr1_3:57713778-57713797 None:intergenic 35.0%
AAATGCAACAACTTCAAAGC+TGG - chr1_3:57713826-57713845 None:intergenic 35.0%
ACCTTCTTCAAGGATCATAT+GGG + chr1_3:57713882-57713901 Msa0128070:CDS 35.0%
CAGCTATAATCAGCAAAGTT+GGG - chr1_3:57713927-57713946 None:intergenic 35.0%
ACAGCTATAATCAGCAAAGT+TGG - chr1_3:57713928-57713947 None:intergenic 35.0%
TTCCATCTTCAAAGACAAGT+TGG - chr1_3:57714255-57714274 None:intergenic 35.0%
! AAGGCGCTAAGTATTGTTGT+TGG + chr1_3:57711709-57711728 Msa0128070:CDS 40.0%
ATCTTCATCAGGACCCAAAA+CGG + chr1_3:57711813-57711832 Msa0128070:CDS 40.0%
! CAGAAGATGCAAACCGTTTT+GGG - chr1_3:57711829-57711848 None:intergenic 40.0%
TCAAAGAGTGAATACAAGCC+TGG + chr1_3:57711925-57711944 Msa0128070:CDS 40.0%
CAAAGAGTGAATACAAGCCT+GGG + chr1_3:57711926-57711945 Msa0128070:CDS 40.0%
AAAGAGTGAATACAAGCCTG+GGG + chr1_3:57711927-57711946 Msa0128070:CDS 40.0%
TACTATAACAGGAAGTGGGA+TGG + chr1_3:57712101-57712120 Msa0128070:intron 40.0%
ACTATAACAGGAAGTGGGAT+GGG + chr1_3:57712102-57712121 Msa0128070:intron 40.0%
TCGAAGAAACCTGGATATGA+CGG + chr1_3:57712127-57712146 Msa0128070:CDS 40.0%
TCAATTAGTCCGTCATATCC+AGG - chr1_3:57712139-57712158 None:intergenic 40.0%
GCTAACCGTCTAATGATGAA+AGG + chr1_3:57712163-57712182 Msa0128070:CDS 40.0%
TACCGTAGCTTCTATGGTAT+CGG - chr1_3:57712200-57712219 None:intergenic 40.0%
GGTGTATGTGTATCCAAACA+GGG + chr1_3:57712577-57712596 Msa0128070:intron 40.0%
!!! TTGATGTTTTTGGGGATGGA+TGG + chr1_3:57712719-57712738 Msa0128070:intron 40.0%
TAGATCAGGTATGTTTGGGT+TGG + chr1_3:57712779-57712798 Msa0128070:intron 40.0%
! TTACGGTATGTCTGGAATTG+TGG - chr1_3:57712910-57712929 None:intergenic 40.0%
! AAGTGCTAACAAACTTGCTC+TGG - chr1_3:57713063-57713082 None:intergenic 40.0%
AAAGTTGCCGCTATAATGGT+TGG + chr1_3:57713175-57713194 Msa0128070:CDS 40.0%
AGACTCACCAACCATTATAG+CGG - chr1_3:57713185-57713204 None:intergenic 40.0%
!! TCACTAGCTTGTTACGTTCA+GGG - chr1_3:57713251-57713270 None:intergenic 40.0%
ACTTACTTGTCAATGGCTCA+TGG + chr1_3:57713329-57713348 Msa0128070:CDS 40.0%
CTTACTTGTCAATGGCTCAT+GGG + chr1_3:57713330-57713349 Msa0128070:CDS 40.0%
! GTCTACAGAATTGACTTTGC+AGG - chr1_3:57713358-57713377 None:intergenic 40.0%
ATGGAACCTCATGGAATAGT+GGG + chr1_3:57713385-57713404 Msa0128070:CDS 40.0%
AGTCATAAACACACAGCGAA+AGG - chr1_3:57713424-57713443 None:intergenic 40.0%
TGTCGAAAGATGCAAGTATC+TGG + chr1_3:57713507-57713526 Msa0128070:CDS 40.0%
AACCTGTGTTGGAAACTTAC+AGG - chr1_3:57713566-57713585 None:intergenic 40.0%
GAAGAATCACTAACCTGTGT+TGG - chr1_3:57713577-57713596 None:intergenic 40.0%
! GATATCTAGAGTTTGACCGA+GGG + chr1_3:57713656-57713675 Msa0128070:intron 40.0%
GACCGAGGGTAACAAAATTA+TGG + chr1_3:57713670-57713689 Msa0128070:intron 40.0%
! GGCCATAATTTTGTTACCCT+CGG - chr1_3:57713675-57713694 None:intergenic 40.0%
ATCCTGACTGAAACAATCAC+TGG - chr1_3:57713696-57713715 None:intergenic 40.0%
GACCTTCTTCAAGGATCATA+TGG + chr1_3:57713881-57713900 Msa0128070:intron 40.0%
TCCCATATGATCCTTGAAGA+AGG - chr1_3:57713886-57713905 None:intergenic 40.0%
TATGGGAGTTCCATTACTCA+TGG + chr1_3:57713899-57713918 Msa0128070:CDS 40.0%
! CTTTGCTGATTATAGCTGTC+AGG + chr1_3:57713929-57713948 Msa0128070:CDS 40.0%
!! AATCTTCGTAGGGAAGCATT+TGG - chr1_3:57714116-57714135 None:intergenic 40.0%
AAATGCTTCCCTACGAAGAT+TGG + chr1_3:57714115-57714134 Msa0128070:CDS 40.0%
ATATGTTCATGTCTTTGGGC+AGG - chr1_3:57714165-57714184 None:intergenic 40.0%
TTGGAGCTAGAATGTGCAAA+AGG - chr1_3:57714236-57714255 None:intergenic 40.0%
! CTCCAACTTGTCTTTGAAGA+TGG + chr1_3:57714250-57714269 Msa0128070:three_prime_UTR 40.0%
! GTCTTTGAAGATGGAACTGA+AGG + chr1_3:57714259-57714278 Msa0128070:three_prime_UTR 40.0%
! TAACTCTCCGCGTTTGCTAA+GGG - chr1_3:57711632-57711651 None:intergenic 45.0%
! TTAACTCTCCGCGTTTGCTA+AGG - chr1_3:57711633-57711652 None:intergenic 45.0%
CGGAGAGTTAAAGTGAAGTG+TGG + chr1_3:57711642-57711661 Msa0128070:five_prime_UTR 45.0%
! GCGCTAAGTATTGTTGTTGG+CGG + chr1_3:57711712-57711731 Msa0128070:CDS 45.0%
! GCAGAAGATGCAAACCGTTT+TGG - chr1_3:57711830-57711849 None:intergenic 45.0%
! GTTTCGCACCAAATTGGTTC+AGG + chr1_3:57711975-57711994 Msa0128070:CDS 45.0%
CTCCGATACCATAGAAGCTA+CGG + chr1_3:57712195-57712214 Msa0128070:CDS 45.0%
CGGTGTATGTGTATCCAAAC+AGG + chr1_3:57712576-57712595 Msa0128070:intron 45.0%
!! TCTCTTTCTAAGGCCCTGTT+TGG - chr1_3:57712593-57712612 None:intergenic 45.0%
! GGCAAAGATCTCCACCATTT+TGG + chr1_3:57712740-57712759 Msa0128070:intron 45.0%
!! ATCAGGTATGTTTGGGTTGG+TGG + chr1_3:57712782-57712801 Msa0128070:intron 45.0%
TAGAGCTCCAAAAGGAATGG+AGG - chr1_3:57713124-57713143 None:intergenic 45.0%
ATGCTCATAGCTCCTATAGG+TGG + chr1_3:57713148-57713167 Msa0128070:CDS 45.0%
AGGCAAAGTTGCCGCTATAA+TGG + chr1_3:57713171-57713190 Msa0128070:CDS 45.0%
!! CACTAGCTTGTTACGTTCAG+GGG - chr1_3:57713250-57713269 None:intergenic 45.0%
!! CTCACTAGCTTGTTACGTTC+AGG - chr1_3:57713252-57713271 None:intergenic 45.0%
ACCTATCAGATGGAACCTCA+TGG + chr1_3:57713376-57713395 Msa0128070:CDS 45.0%
TCCATGAGGTTCCATCTGAT+AGG - chr1_3:57713380-57713399 None:intergenic 45.0%
GATGGAACCTCATGGAATAG+TGG + chr1_3:57713384-57713403 Msa0128070:CDS 45.0%
TGGAACCTCATGGAATAGTG+GGG + chr1_3:57713386-57713405 Msa0128070:CDS 45.0%
CGAAAGATGCAAGTATCTGG+AGG + chr1_3:57713510-57713529 Msa0128070:CDS 45.0%
CACCTGTAAGTTTCCAACAC+AGG + chr1_3:57713561-57713580 Msa0128070:intron 45.0%
ATATCCCTTCCCATGAGAAC+TGG - chr1_3:57713641-57713660 None:intergenic 45.0%
! GGATATCTAGAGTTTGACCG+AGG + chr1_3:57713655-57713674 Msa0128070:intron 45.0%
AACATTTGAGTCCGATCCCT+TGG + chr1_3:57713764-57713783 Msa0128070:intron 45.0%
AAGTTGGGCTCCATGAGTAA+TGG - chr1_3:57713912-57713931 None:intergenic 45.0%
TTTGGACATGCTTCCAAGCA+AGG - chr1_3:57714098-57714117 None:intergenic 45.0%
TCTGGAAGCCAATCTTCGTA+GGG - chr1_3:57714126-57714145 None:intergenic 45.0%
! TTCTGGAAGCCAATCTTCGT+AGG - chr1_3:57714127-57714146 None:intergenic 45.0%
!! AGATTGGCTTCCAGAAACAC+AGG + chr1_3:57714131-57714150 Msa0128070:CDS 45.0%
CTAGAATGTGCAAAAGGCTG+TGG - chr1_3:57714230-57714249 None:intergenic 45.0%
TGAAGATGGAACTGAAGGCT+TGG + chr1_3:57714264-57714283 Msa0128070:three_prime_UTR 45.0%
GAAGATGGAACTGAAGGCTT+GGG + chr1_3:57714265-57714284 Msa0128070:three_prime_UTR 45.0%
GAACTGAAGGCTTGGGTAAT+GGG + chr1_3:57714272-57714291 Msa0128070:three_prime_UTR 45.0%
! AACTCTCCGCGTTTGCTAAG+GGG - chr1_3:57711631-57711650 None:intergenic 50.0%
GTTAACTGGAAGGGGCTGTT+TGG - chr1_3:57712004-57712023 None:intergenic 50.0%
CTCATAGCTCCTATAGGTGG+AGG + chr1_3:57713151-57713170 Msa0128070:CDS 50.0%
GCAACTTTGCCTCCACCTAT+AGG - chr1_3:57713163-57713182 None:intergenic 50.0%
GATCACCCCACTATTCCATG+AGG - chr1_3:57713394-57713413 None:intergenic 50.0%
CTGGAGGAAAGCAAGTGTGT+TGG + chr1_3:57713526-57713545 Msa0128070:intron 50.0%
TCTTAAGCCGCCAGTTCTCA+TGG + chr1_3:57713628-57713647 Msa0128070:intron 50.0%
CTTAAGCCGCCAGTTCTCAT+GGG + chr1_3:57713629-57713648 Msa0128070:intron 50.0%
GGCCAGTGATTGTTTCAGTC+AGG + chr1_3:57713691-57713710 Msa0128070:intron 50.0%
GTGTCATCTTCAGGAAGTGG+GGG - chr1_3:57714062-57714081 None:intergenic 50.0%
! GGTGTCATCTTCAGGAAGTG+GGG - chr1_3:57714063-57714082 None:intergenic 50.0%
!! CGGTGTCATCTTCAGGAAGT+GGG - chr1_3:57714064-57714083 None:intergenic 50.0%
!! ACGGTGTCATCTTCAGGAAG+TGG - chr1_3:57714065-57714084 None:intergenic 50.0%
!! TTCAGGACGGTGTCATCTTC+AGG - chr1_3:57714071-57714090 None:intergenic 50.0%
TGAAGATGACACCGTCCTGA+AGG + chr1_3:57714070-57714089 Msa0128070:CDS 50.0%
GGAACTGAAGGCTTGGGTAA+TGG + chr1_3:57714271-57714290 Msa0128070:three_prime_UTR 50.0%
TTGCTAAGGGGACCGCTTAC+CGG - chr1_3:57711619-57711638 None:intergenic 55.0%
GGATGGGACTCGAAGAAACC+TGG + chr1_3:57712118-57712137 Msa0128070:CDS 55.0%
!! GTTTGGGTTGGTGGCTAGAG+TGG + chr1_3:57712791-57712810 Msa0128070:intron 55.0%
!! GGTTGGTGGCTAGAGTGGAA+TGG + chr1_3:57712796-57712815 Msa0128070:intron 55.0%
TCCCTTCCCATGAGAACTGG+CGG - chr1_3:57713638-57713657 None:intergenic 55.0%
CAAGCAAGGCTCCTTCAGGA+CGG - chr1_3:57714084-57714103 None:intergenic 55.0%
CTTCCAAGCAAGGCTCCTTC+AGG - chr1_3:57714088-57714107 None:intergenic 55.0%
GGCAGTCACACCTGTGTTTC+TGG - chr1_3:57714144-57714163 None:intergenic 55.0%
AGCGGTCCCCTTAGCAAACG+CGG + chr1_3:57711622-57711641 Msa0128070:five_prime_UTR 60.0%
AGCCGCCAGTTCTCATGGGA+AGG + chr1_3:57713633-57713652 Msa0128070:intron 60.0%
GCCGCCAGTTCTCATGGGAA+GGG + chr1_3:57713634-57713653 Msa0128070:intron 60.0%
CGTCCTGAAGGAGCCTTGCT+TGG + chr1_3:57714082-57714101 Msa0128070:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 57711612 57714480 57711612 ID=Msa0128070;Name=Msa0128070
chr1_3 mRNA 57711612 57714480 57711612 ID=Msa0128070-mRNA-1;Parent=Msa0128070;Name=Msa0128070-mRNA-1;_AED=0.19;_eAED=0.19;_QI=94|0.57|0.62|1|0.71|0.62|8|302|271
chr1_3 exon 57711612 57711834 57711612 ID=Msa0128070-mRNA-1:exon:18401;Parent=Msa0128070-mRNA-1
chr1_3 exon 57711907 57711996 57711907 ID=Msa0128070-mRNA-1:exon:18402;Parent=Msa0128070-mRNA-1
chr1_3 exon 57712112 57712216 57712112 ID=Msa0128070-mRNA-1:exon:18403;Parent=Msa0128070-mRNA-1
chr1_3 exon 57713064 57713196 57713064 ID=Msa0128070-mRNA-1:exon:18404;Parent=Msa0128070-mRNA-1
chr1_3 exon 57713316 57713429 57713316 ID=Msa0128070-mRNA-1:exon:18405;Parent=Msa0128070-mRNA-1
chr1_3 exon 57713502 57713539 57713502 ID=Msa0128070-mRNA-1:exon:18406;Parent=Msa0128070-mRNA-1
chr1_3 exon 57713882 57713950 57713882 ID=Msa0128070-mRNA-1:exon:18407;Parent=Msa0128070-mRNA-1
chr1_3 exon 57714041 57714480 57714041 ID=Msa0128070-mRNA-1:exon:18408;Parent=Msa0128070-mRNA-1
chr1_3 five_prime_UTR 57711612 57711705 57711612 ID=Msa0128070-mRNA-1:five_prime_utr;Parent=Msa0128070-mRNA-1
chr1_3 CDS 57711706 57711834 57711706 ID=Msa0128070-mRNA-1:cds;Parent=Msa0128070-mRNA-1
chr1_3 CDS 57711907 57711996 57711907 ID=Msa0128070-mRNA-1:cds;Parent=Msa0128070-mRNA-1
chr1_3 CDS 57712112 57712216 57712112 ID=Msa0128070-mRNA-1:cds;Parent=Msa0128070-mRNA-1
chr1_3 CDS 57713064 57713196 57713064 ID=Msa0128070-mRNA-1:cds;Parent=Msa0128070-mRNA-1
chr1_3 CDS 57713316 57713429 57713316 ID=Msa0128070-mRNA-1:cds;Parent=Msa0128070-mRNA-1
chr1_3 CDS 57713502 57713539 57713502 ID=Msa0128070-mRNA-1:cds;Parent=Msa0128070-mRNA-1
chr1_3 CDS 57713882 57713950 57713882 ID=Msa0128070-mRNA-1:cds;Parent=Msa0128070-mRNA-1
chr1_3 CDS 57714041 57714178 57714041 ID=Msa0128070-mRNA-1:cds;Parent=Msa0128070-mRNA-1
chr1_3 three_prime_UTR 57714179 57714480 57714179 ID=Msa0128070-mRNA-1:three_prime_utr;Parent=Msa0128070-mRNA-1
Gene Sequence

>Msa0128070

ATGAAGGCGCTAAGTATTGTTGTTGGCGGTGTTCCAATTCCAACGCTTTGTTCTAATGGAATTCGTAAACGTCAGTTCTGCGTTTCAGCTTCTTCTTCTTCTTCTTCATCTTCATCAGGACCCAAAACGGTGGGAGTTGCAGCAGCTTCAAAGAGTGAATACAAGCCTGGGGTTATTGATGATTTGTTCCTCAATTTGTTTCGCACCAAATTGGTTCAGGAAGTGGGATGGGACTCGAAGAAACCTGGATATGACGGACTAATTGAAGTTGCTAACCGTCTAATGATGAAAGGCACTACAAACTCCGATACCATAGAAGCTACGAGCAAGTTTGTTAGCACTTATGTCTTGTTACAGGTACGAATTTTGAGGTCTTTGTTTCCTCCATTCCTTTTGGAGCTCTATAAAATGCTCATAGCTCCTATAGGTGGAGGCAAAGTTGCCGCTATAATGGTTGCAAGGGTTACTGCACTTACTTGTCAATGGCTCATGGGACCCTGCAAAGTCAATTCTGTAGACCTATCAGATGGAACCTCATGGAATAGTGGGGTGATCACTTATACCTTTCGCTGTGCATGTCGAAAGATGCAAGTATCTGGAGGAAAGCAAACCTTCTTCAAGGATCATATGGGAGTTCCATTACTCATGGAGCCCAACTTTGCTGATTATAGCTGTCAGTTCAAATTCGGAGTTCTTCCCCCACTTCCTGAAGATGACACCGTCCTGAAGGAGCCTTGCTTGGAAGCATGTCCAAATGCTTCCCTACGAAGATTGGCTTCCAGAAACACAGGTGTGACTGCCTGCCCAAAGACATGA

Protein sequence

>Msa0128070

MKALSIVVGGVPIPTLCSNGIRKRQFCVSASSSSSSSSSGPKTVGVAAASKSEYKPGVIDDLFLNLFRTKLVQEVGWDSKKPGYDGLIEVANRLMMKGTTNSDTIEATSKFVSTYVLLQVRILRSLFPPFLLELYKMLIAPIGGGKVAAIMVARVTALTCQWLMGPCKVNSVDLSDGTSWNSGVITYTFRCACRKMQVSGGKQTFFKDHMGVPLLMEPNFADYSCQFKFGVLPPLPEDDTVLKEPCLEACPNASLRRLASRNTGVTACPKT*