AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0081840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0081840 MtrunA17_Chr1g0194531 81.655 278 26 5 1 271 1 260 5.01e-156 434
Msa0081840 MtrunA17_Chr7g0260531 29.469 207 125 5 50 250 46 237 6.62e-18 80.9
Msa0081840 MtrunA17_Chr1g0184911 30.622 209 112 8 54 250 61 248 2.13e-16 76.6
Msa0081840 MtrunA17_Chr3g0119841 27.419 248 125 9 50 270 44 263 4.23e-16 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0081840 AT4G01995.1 53.846 247 86 5 21 260 27 252 1.05e-76 234
Msa0081840 AT4G01995.3 57.727 220 73 4 48 260 15 221 8.79e-76 230
Msa0081840 AT4G01995.2 52.841 176 64 2 21 196 27 183 1.43e-50 165
Msa0081840 AT1G64680.1 30.093 216 112 9 51 247 36 231 2.81e-19 85.1
Msa0081840 AT1G03055.1 28.507 221 124 8 46 250 52 254 2.97e-17 79.7

Find 103 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCAGTCACACCTGTGTTTC+TGG 0.163795 1_2:-60548301 None:intergenic
ATTCCAACGCTTTGTTCTAA+TGG 0.234706 1_2:+60545902 Msa0081840:CDS
GCAGAAGATGCAAACCGTTT+TGG 0.270080 1_2:-60545987 None:intergenic
CAATTTGTTTCGCACCAAAT+TGG 0.279978 1_2:+60546129 Msa0081840:CDS
TTGCTAAGGGGACCGCTTAC+CGG 0.287128 1_2:-60545776 None:intergenic
TTTGTTTCCTCCATTCCTTT+TGG 0.289746 1_2:+60547274 Msa0081840:CDS
GAAAATTACCGTAGCTTCTA+TGG 0.292895 1_2:-60546363 None:intergenic
TTAGGTTACCTGAACCAATT+TGG 0.303056 1_2:-60546143 None:intergenic
TTCAGGACGGTGTCATCTTC+AGG 0.308272 1_2:-60548228 None:intergenic
TAGCACTTATGTCTTGTTAC+AGG 0.309687 1_2:+60547235 Msa0081840:CDS
GACCTTCTTCAAGGATCATA+TGG 0.328100 1_2:+60548041 Msa0081840:intron
TTAAATTTGCAGTTCAAATT+CGG 0.342169 1_2:+60548189 Msa0081840:intron
GTCTACAGAATTGACTTTGC+AGG 0.348660 1_2:-60547515 None:intergenic
GTTTCGCACCAAATTGGTTC+AGG 0.358197 1_2:+60546135 Msa0081840:CDS
TCTTCTTCTTCATCTTCATC+AGG 0.361445 1_2:+60545962 Msa0081840:CDS
GAACTGAAGGCTTGGGTAAT+GGG 0.361682 1_2:+60548432 Msa0081840:three_prime_UTR
TTAGAACAAAGCGTTGGAAT+TGG 0.365725 1_2:-60545899 None:intergenic
TGTCGAAAGATGCAAGTATC+TGG 0.367315 1_2:+60547667 Msa0081840:CDS
AAATGCTTCCCTACGAAGAT+TGG 0.373694 1_2:+60548275 Msa0081840:CDS
CTTCCAAGCAAGGCTCCTTC+AGG 0.383691 1_2:-60548245 None:intergenic
TAAATATATTGTTAATTCGT+TGG 0.393843 1_2:+60548523 Msa0081840:three_prime_UTR
CTCCAACTTGTCTTTGAAGA+TGG 0.414710 1_2:+60548410 Msa0081840:three_prime_UTR
TTAAATTTAGACCTTCTTCA+AGG 0.416665 1_2:+60548032 Msa0081840:intron
GCAACTTTGCCTCCACCTAT+AGG 0.420034 1_2:-60547320 None:intergenic
ACAGCTATAATCAGCAAAGT+TGG 0.429629 1_2:-60548085 None:intergenic
TCAAAGAGTGAATACAAGCC+TGG 0.439154 1_2:+60546085 Msa0081840:CDS
AGGCAAAGTTGCCGCTATAA+TGG 0.445748 1_2:+60547331 Msa0081840:CDS
GGAACTGAAGGCTTGGGTAA+TGG 0.446568 1_2:+60548431 Msa0081840:three_prime_UTR
GAAGATGGAACTGAAGGCTT+GGG 0.449488 1_2:+60548425 Msa0081840:three_prime_UTR
AATCTTCGTAGGGAAGCATT+TGG 0.450960 1_2:-60548273 None:intergenic
AACAATATATTTACAGAGAT+GGG 0.452375 1_2:-60548513 None:intergenic
CTTTGCTGATTATAGCTGTC+AGG 0.455452 1_2:+60548089 Msa0081840:CDS
TTAACTCTCCGCGTTTGCTA+AGG 0.456999 1_2:-60545790 None:intergenic
CGTCCTGAAGGAGCCTTGCT+TGG 0.459856 1_2:+60548242 Msa0081840:CDS
TAACAATATATTTACAGAGA+TGG 0.468144 1_2:-60548514 None:intergenic
TTAGTTAAGTTGTTACAGTT+AGG 0.472150 1_2:+60545838 Msa0081840:five_prime_UTR
TCAATTAGTCCGTCATATCC+AGG 0.477685 1_2:-60546296 None:intergenic
AAAATGCTCATAGCTCCTAT+AGG 0.484909 1_2:+60547305 Msa0081840:CDS
TAACTCTCCGCGTTTGCTAA+GGG 0.485236 1_2:-60545789 None:intergenic
GATGGAACCTCATGGAATAG+TGG 0.485415 1_2:+60547544 Msa0081840:CDS
GTCTTTGAAGATGGAACTGA+AGG 0.487373 1_2:+60548419 Msa0081840:three_prime_UTR
TTACTGCACTTACTTGTCAA+TGG 0.489234 1_2:+60547482 Msa0081840:CDS
ACCTTCTTCAAGGATCATAT+GGG 0.499420 1_2:+60548042 Msa0081840:CDS
TTCCATCTTCAAAGACAAGT+TGG 0.500129 1_2:-60548412 None:intergenic
TGAAGATGGAACTGAAGGCT+TGG 0.500254 1_2:+60548424 Msa0081840:three_prime_UTR
CAGCTATAATCAGCAAAGTT+GGG 0.500940 1_2:-60548084 None:intergenic
CGGTGTCATCTTCAGGAAGT+GGG 0.502536 1_2:-60548221 None:intergenic
TACCGTAGCTTCTATGGTAT+CGG 0.506593 1_2:-60546357 None:intergenic
ATCTTCATCAGGACCCAAAA+CGG 0.508312 1_2:+60545973 Msa0081840:CDS
ATGGAACCTCATGGAATAGT+GGG 0.508469 1_2:+60547545 Msa0081840:CDS
GGATGGGACTCGAAGAAACC+TGG 0.509195 1_2:+60546278 Msa0081840:CDS
CAAAGAGTGAATACAAGCCT+GGG 0.509583 1_2:+60546086 Msa0081840:CDS
ACGGTGTCATCTTCAGGAAG+TGG 0.512090 1_2:-60548222 None:intergenic
TTTGGACATGCTTCCAAGCA+AGG 0.516931 1_2:-60548255 None:intergenic
AAGGCGCTAAGTATTGTTGT+TGG 0.517773 1_2:+60545869 Msa0081840:CDS
ATATGTTCATGTCTTTGGGC+AGG 0.520060 1_2:-60548322 None:intergenic
AGGTTAGAAACCAATTAAAC+CGG 0.520338 1_2:+60545757 None:intergenic
ACTTACTTGTCAATGGCTCA+TGG 0.525178 1_2:+60547489 Msa0081840:CDS
TTGGAGCTAGAATGTGCAAA+AGG 0.526094 1_2:-60548393 None:intergenic
TCTACAGAATTGACTTTGCA+GGG 0.526670 1_2:-60547514 None:intergenic
GCGCTAAGTATTGTTGTTGG+CGG 0.530949 1_2:+60545872 Msa0081840:CDS
CTTACTTGTCAATGGCTCAT+GGG 0.539633 1_2:+60547490 Msa0081840:CDS
CTCCGATACCATAGAAGCTA+CGG 0.540098 1_2:+60546355 Msa0081840:CDS
TATGGGAGTTCCATTACTCA+TGG 0.540166 1_2:+60548059 Msa0081840:CDS
CTAGAATGTGCAAAAGGCTG+TGG 0.546342 1_2:-60548387 None:intergenic
TACTATAACAGGAAGTGGGA+TGG 0.548952 1_2:+60546261 Msa0081840:intron
TTATAGAGCTCCAAAAGGAA+TGG 0.549533 1_2:-60547284 None:intergenic
ATTTGGTGCGAAACAAATTG+AGG 0.552877 1_2:-60546126 None:intergenic
TTACAGTTAGGAAGAAATGA+AGG 0.558079 1_2:+60545850 Msa0081840:exon
TCCCATATGATCCTTGAAGA+AGG 0.562632 1_2:-60548043 None:intergenic
AACTCTCCGCGTTTGCTAAG+GGG 0.565073 1_2:-60545788 None:intergenic
CTCATAGCTCCTATAGGTGG+AGG 0.565279 1_2:+60547311 Msa0081840:CDS
TAGTGCCTTTCATCATTAGA+CGG 0.569097 1_2:-60546328 None:intergenic
ATTCCATTAGAACAAAGCGT+TGG 0.570606 1_2:-60545905 None:intergenic
AAAATACTATAACAGGAAGT+GGG 0.571265 1_2:+60546257 Msa0081840:intron
AAGTTGGGCTCCATGAGTAA+TGG 0.572536 1_2:-60548069 None:intergenic
TCGAAGAAACCTGGATATGA+CGG 0.573061 1_2:+60546287 Msa0081840:CDS
ACTATAACAGGAAGTGGGAT+GGG 0.573427 1_2:+60546262 Msa0081840:intron
TGAAGATGACACCGTCCTGA+AGG 0.575565 1_2:+60548230 Msa0081840:CDS
TCTGGAAGCCAATCTTCGTA+GGG 0.579827 1_2:-60548283 None:intergenic
ACCTATCAGATGGAACCTCA+TGG 0.586052 1_2:+60547536 Msa0081840:CDS
AACAAATCATCAATAACCCC+AGG 0.586570 1_2:-60546103 None:intergenic
AGTCATAAACACACAGCGAA+AGG 0.587535 1_2:-60547581 None:intergenic
TCCATGAGGTTCCATCTGAT+AGG 0.590896 1_2:-60547537 None:intergenic
TTCTGGAAGCCAATCTTCGT+AGG 0.598210 1_2:-60548284 None:intergenic
AAAGTTGCCGCTATAATGGT+TGG 0.601706 1_2:+60547335 Msa0081840:CDS
AATTCTGTAGACCTATCAGA+TGG 0.614406 1_2:+60547526 Msa0081840:CDS
TAGAGCTCCAAAAGGAATGG+AGG 0.615600 1_2:-60547281 None:intergenic
TCAAAGATGAATTATCGTTG+TGG 0.625539 1_2:-60548459 None:intergenic
GCTAACCGTCTAATGATGAA+AGG 0.626704 1_2:+60546323 Msa0081840:CDS
ATGCTCATAGCTCCTATAGG+TGG 0.633669 1_2:+60547308 Msa0081840:CDS
CGAAAGATGCAAGTATCTGG+AGG 0.640761 1_2:+60547670 Msa0081840:CDS
GGTGTCATCTTCAGGAAGTG+GGG 0.642463 1_2:-60548220 None:intergenic
AGCGGTCCCCTTAGCAAACG+CGG 0.647659 1_2:+60545782 Msa0081840:five_prime_UTR
CAAGCAAGGCTCCTTCAGGA+CGG 0.652728 1_2:-60548241 None:intergenic
CGGAGAGTTAAAGTGAAGTG+TGG 0.653739 1_2:+60545802 Msa0081840:five_prime_UTR
GTGTCATCTTCAGGAAGTGG+GGG 0.656581 1_2:-60548219 None:intergenic
AAACCAATTAAACCGGTAAG+CGG 0.664148 1_2:+60545764 None:intergenic
AGATTGGCTTCCAGAAACAC+AGG 0.677702 1_2:+60548291 Msa0081840:CDS
AGACTCACCAACCATTATAG+CGG 0.701172 1_2:-60547342 None:intergenic
TGGAACCTCATGGAATAGTG+GGG 0.705163 1_2:+60547546 Msa0081840:CDS
AAAGAGTGAATACAAGCCTG+GGG 0.716715 1_2:+60546087 Msa0081840:CDS
GATCACCCCACTATTCCATG+AGG 0.750720 1_2:-60547551 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACTTAAATAAATGTTTA+AGG - chr1_2:60547452-60547471 None:intergenic 10.0%
!! ATATATGAATATGATTAATG+TGG + chr1_2:60546218-60546237 Msa0081840:intron 15.0%
!! TAAATATATTGTTAATTCGT+TGG + chr1_2:60548523-60548542 Msa0081840:three_prime_UTR 15.0%
!!! GTTTTGATTGAATTTGAATT+AGG + chr1_2:60546045-60546064 Msa0081840:intron 20.0%
!! TATAAATAAGTTAACTGGAA+GGG - chr1_2:60546173-60546192 None:intergenic 20.0%
!! AAAGCTATAAATAAGTTAAC+TGG - chr1_2:60546178-60546197 None:intergenic 20.0%
!!! TTTTAGAAAGAAAGAAAAGA+GGG + chr1_2:60546195-60546214 Msa0081840:intron 20.0%
!! AGATTATCAAACTGTTTATA+AGG + chr1_2:60546572-60546591 Msa0081840:intron 20.0%
!! AAATCCTAAGATGATAAAAA+TGG + chr1_2:60546807-60546826 Msa0081840:intron 20.0%
!!! AGATAAGAATTTGATGTTTT+TGG + chr1_2:60546869-60546888 Msa0081840:intron 20.0%
!!! GATAAGAATTTGATGTTTTT+GGG + chr1_2:60546870-60546889 Msa0081840:intron 20.0%
!!! ATAAGAATTTGATGTTTTTG+GGG + chr1_2:60546871-60546890 Msa0081840:intron 20.0%
!! GAATAAGTAACATTGTATTA+CGG - chr1_2:60547087-60547106 None:intergenic 20.0%
!!! TAATACAATGTTACTTATTC+TGG + chr1_2:60547087-60547106 Msa0081840:intron 20.0%
!! AAGTTTAGAAGAATCATATA+AGG - chr1_2:60547185-60547204 None:intergenic 20.0%
!!! TTTATTTAAGTTTTGAAGCA+AGG + chr1_2:60547458-60547477 Msa0081840:intron 20.0%
!!! TTATTTAAGTTTTGAAGCAA+GGG + chr1_2:60547459-60547478 Msa0081840:intron 20.0%
!! TATGTACTATAAAATGTTGT+AGG + chr1_2:60547640-60547659 Msa0081840:intron 20.0%
!! AAATATTACGTATTCTCTTA+TGG + chr1_2:60548116-60548135 Msa0081840:intron 20.0%
!! ATTTGAACTGCAAATTTAAA+AGG - chr1_2:60548188-60548207 None:intergenic 20.0%
!! TTAAATTTGCAGTTCAAATT+CGG + chr1_2:60548189-60548208 Msa0081840:intron 20.0%
!! AAAAATATGTTCATGTCTTT+GGG - chr1_2:60548329-60548348 None:intergenic 20.0%
!! AACAATATATTTACAGAGAT+GGG - chr1_2:60548516-60548535 None:intergenic 20.0%
!! TAACAATATATTTACAGAGA+TGG - chr1_2:60548517-60548536 None:intergenic 20.0%
!!! ATGTTTTCAATGAATTCATT+CGG - chr1_2:60548577-60548596 None:intergenic 20.0%
!! TTAGTTAAGTTGTTACAGTT+AGG + chr1_2:60545838-60545857 Msa0081840:five_prime_UTR 25.0%
! TTGATTGAATTTGAATTAGG+TGG + chr1_2:60546048-60546067 Msa0081840:intron 25.0%
! TGATTGAATTTGAATTAGGT+GGG + chr1_2:60546049-60546068 Msa0081840:intron 25.0%
! ATAAATAAGTTAACTGGAAG+GGG - chr1_2:60546172-60546191 None:intergenic 25.0%
! CTATAAATAAGTTAACTGGA+AGG - chr1_2:60546174-60546193 None:intergenic 25.0%
!!! CTTTTAGAAAGAAAGAAAAG+AGG + chr1_2:60546194-60546213 Msa0081840:intron 25.0%
! TATGAATATGATTAATGTGG+TGG + chr1_2:60546221-60546240 Msa0081840:intron 25.0%
! ATGAATATGATTAATGTGGT+GGG + chr1_2:60546222-60546241 Msa0081840:intron 25.0%
! GAGTATGAAAATACTATAAC+AGG + chr1_2:60546250-60546269 Msa0081840:intron 25.0%
! AAAATACTATAACAGGAAGT+GGG + chr1_2:60546257-60546276 Msa0081840:intron 25.0%
!!! ATATAAACCTTTTGAAACCA+TGG - chr1_2:60546456-60546475 None:intergenic 25.0%
!! TAAATTTTGTGTGACTGTTT+AGG + chr1_2:60546534-60546553 Msa0081840:intron 25.0%
!!! GTTTCCATTTTTATCATCTT+AGG - chr1_2:60546814-60546833 None:intergenic 25.0%
! TAGTTATCTTTGCGAAAAAA+TGG + chr1_2:60546986-60547005 Msa0081840:intron 25.0%
! TGATTCTTCTAAACTTTGAA+TGG + chr1_2:60547189-60547208 Msa0081840:intron 25.0%
! TCATCTTGTATTATTGAAAG+TGG + chr1_2:60547615-60547634 Msa0081840:intron 25.0%
! TACTAACATGAAAAAACCAA+GGG - chr1_2:60547943-60547962 None:intergenic 25.0%
! ATACTAACATGAAAAAACCA+AGG - chr1_2:60547944-60547963 None:intergenic 25.0%
!!! TTTGAAGTTGTTGCATTTTA+TGG + chr1_2:60547988-60548007 Msa0081840:intron 25.0%
! TTAAATTTAGACCTTCTTCA+AGG + chr1_2:60548032-60548051 Msa0081840:intron 25.0%
! GAGTTCAAATTTATATGATG+AGG + chr1_2:60548138-60548157 Msa0081840:intron 25.0%
! GAAAAATATGTTCATGTCTT+TGG - chr1_2:60548330-60548349 None:intergenic 25.0%
!! AGACATGAACATATTTTTCT+TGG + chr1_2:60548331-60548350 Msa0081840:exon 25.0%
!! GACATGAACATATTTTTCTT+GGG + chr1_2:60548332-60548351 Msa0081840:exon 25.0%
!! TGTTTTCAATGAATTCATTC+GGG - chr1_2:60548576-60548595 None:intergenic 25.0%
!!! TTTTTGAGTTAAGATATCGA+AGG + chr1_2:60548606-60548625 Msa0081840:three_prime_UTR 25.0%
TTACAGTTAGGAAGAAATGA+AGG + chr1_2:60545850-60545869 Msa0081840:exon 30.0%
GAAAATACTATAACAGGAAG+TGG + chr1_2:60546256-60546275 Msa0081840:intron 30.0%
AGCTTTACTTTCTCTTTCTA+AGG - chr1_2:60546763-60546782 None:intergenic 30.0%
! GAAAGAGAAAGTAAAGCTTT+TGG + chr1_2:60546765-60546784 Msa0081840:intron 30.0%
!! TGAAGTGGATTGGAATAAAA+CGG - chr1_2:60547035-60547054 None:intergenic 30.0%
TCAGTTAAAGACAAATCGTT+TGG - chr1_2:60547895-60547914 None:intergenic 30.0%
! AAGTTGTTGCATTTTATGGA+TGG + chr1_2:60547992-60548011 Msa0081840:intron 30.0%
TCAAAGATGAATTATCGTTG+TGG - chr1_2:60548462-60548481 None:intergenic 30.0%
! GTTTTCAATGAATTCATTCG+GGG - chr1_2:60548575-60548594 None:intergenic 30.0%
!! TTAGAACAAAGCGTTGGAAT+TGG - chr1_2:60545902-60545921 None:intergenic 35.0%
! ATTCCAACGCTTTGTTCTAA+TGG + chr1_2:60545902-60545921 Msa0081840:CDS 35.0%
ATTCCATTAGAACAAAGCGT+TGG - chr1_2:60545908-60545927 None:intergenic 35.0%
TCTTCTTCTTCATCTTCATC+AGG + chr1_2:60545962-60545981 Msa0081840:CDS 35.0%
AACAAATCATCAATAACCCC+AGG - chr1_2:60546106-60546125 None:intergenic 35.0%
!! ATTTGGTGCGAAACAAATTG+AGG - chr1_2:60546129-60546148 None:intergenic 35.0%
! CAATTTGTTTCGCACCAAAT+TGG + chr1_2:60546129-60546148 Msa0081840:CDS 35.0%
TTAGGTTACCTGAACCAATT+TGG - chr1_2:60546146-60546165 None:intergenic 35.0%
! AATATGATTAATGTGGTGGG+TGG + chr1_2:60546225-60546244 Msa0081840:intron 35.0%
TAGTGCCTTTCATCATTAGA+CGG - chr1_2:60546331-60546350 None:intergenic 35.0%
GAAAATTACCGTAGCTTCTA+TGG - chr1_2:60546366-60546385 None:intergenic 35.0%
TTCCTTACAAACCAAAACCA+TGG + chr1_2:60546436-60546455 Msa0081840:intron 35.0%
!!! AACCATGGTTTTGGTTTGTA+AGG - chr1_2:60546441-60546460 None:intergenic 35.0%
ACCAAAACCATGGTTTCAAA+AGG + chr1_2:60546446-60546465 Msa0081840:intron 35.0%
!!! ACCTTTTGAAACCATGGTTT+TGG - chr1_2:60546450-60546469 None:intergenic 35.0%
!! AGCTGTTTTCATAAGCTATC+TGG - chr1_2:60546625-60546644 None:intergenic 35.0%
TCATAATAAGCACTTGTGAG+CGG + chr1_2:60546716-60546735 Msa0081840:intron 35.0%
!!! GAATTTGATGTTTTTGGGGA+TGG + chr1_2:60546875-60546894 Msa0081840:intron 35.0%
AACTCTCAAAACCAAAATGG+TGG - chr1_2:60546914-60546933 None:intergenic 35.0%
CCAAACTCTCAAAACCAAAA+TGG - chr1_2:60546917-60546936 None:intergenic 35.0%
!!! CCATTTTGGTTTTGAGAGTT+TGG + chr1_2:60546914-60546933 Msa0081840:intron 35.0%
TTGAGAGTTTGGTATAGATC+AGG + chr1_2:60546925-60546944 Msa0081840:intron 35.0%
TGGTATAGATCAGGTATGTT+TGG + chr1_2:60546934-60546953 Msa0081840:intron 35.0%
GGTATAGATCAGGTATGTTT+GGG + chr1_2:60546935-60546954 Msa0081840:intron 35.0%
TAGAGTTGAATGAAGTGGAT+TGG - chr1_2:60547045-60547064 None:intergenic 35.0%
TGGTATAGAGTTGAATGAAG+TGG - chr1_2:60547050-60547069 None:intergenic 35.0%
ACATTGTATTACGGTATGTC+TGG - chr1_2:60547078-60547097 None:intergenic 35.0%
! TAGCACTTATGTCTTGTTAC+AGG + chr1_2:60547235-60547254 Msa0081840:CDS 35.0%
! TGTTACAGGTACGAATTTTG+AGG + chr1_2:60547249-60547268 Msa0081840:CDS 35.0%
! TTTGTTTCCTCCATTCCTTT+TGG + chr1_2:60547274-60547293 Msa0081840:CDS 35.0%
TTATAGAGCTCCAAAAGGAA+TGG - chr1_2:60547287-60547306 None:intergenic 35.0%
! GCATTTTATAGAGCTCCAAA+AGG - chr1_2:60547292-60547311 None:intergenic 35.0%
AAAATGCTCATAGCTCCTAT+AGG + chr1_2:60547305-60547324 Msa0081840:CDS 35.0%
TTACTGCACTTACTTGTCAA+TGG + chr1_2:60547482-60547501 Msa0081840:CDS 35.0%
! TCTACAGAATTGACTTTGCA+GGG - chr1_2:60547517-60547536 None:intergenic 35.0%
AATTCTGTAGACCTATCAGA+TGG + chr1_2:60547526-60547545 Msa0081840:CDS 35.0%
TTTCAGTCAGGATTTGAACT+CGG + chr1_2:60547863-60547882 Msa0081840:intron 35.0%
ACATGAAAAAACCAAGGGAT+CGG - chr1_2:60547938-60547957 None:intergenic 35.0%
AAATGCAACAACTTCAAAGC+TGG - chr1_2:60547986-60548005 None:intergenic 35.0%
ACCTTCTTCAAGGATCATAT+GGG + chr1_2:60548042-60548061 Msa0081840:CDS 35.0%
CAGCTATAATCAGCAAAGTT+GGG - chr1_2:60548087-60548106 None:intergenic 35.0%
ACAGCTATAATCAGCAAAGT+TGG - chr1_2:60548088-60548107 None:intergenic 35.0%
TTCCATCTTCAAAGACAAGT+TGG - chr1_2:60548415-60548434 None:intergenic 35.0%
! AAGGCGCTAAGTATTGTTGT+TGG + chr1_2:60545869-60545888 Msa0081840:CDS 40.0%
ATCTTCATCAGGACCCAAAA+CGG + chr1_2:60545973-60545992 Msa0081840:CDS 40.0%
! CAGAAGATGCAAACCGTTTT+GGG - chr1_2:60545989-60546008 None:intergenic 40.0%
TCAAAGAGTGAATACAAGCC+TGG + chr1_2:60546085-60546104 Msa0081840:CDS 40.0%
CAAAGAGTGAATACAAGCCT+GGG + chr1_2:60546086-60546105 Msa0081840:CDS 40.0%
AAAGAGTGAATACAAGCCTG+GGG + chr1_2:60546087-60546106 Msa0081840:CDS 40.0%
TACTATAACAGGAAGTGGGA+TGG + chr1_2:60546261-60546280 Msa0081840:intron 40.0%
ACTATAACAGGAAGTGGGAT+GGG + chr1_2:60546262-60546281 Msa0081840:intron 40.0%
TCGAAGAAACCTGGATATGA+CGG + chr1_2:60546287-60546306 Msa0081840:CDS 40.0%
TCAATTAGTCCGTCATATCC+AGG - chr1_2:60546299-60546318 None:intergenic 40.0%
GCTAACCGTCTAATGATGAA+AGG + chr1_2:60546323-60546342 Msa0081840:CDS 40.0%
TACCGTAGCTTCTATGGTAT+CGG - chr1_2:60546360-60546379 None:intergenic 40.0%
GGTGTATGTGTATCCAAACA+GGG + chr1_2:60546737-60546756 Msa0081840:intron 40.0%
!!! TTGATGTTTTTGGGGATGGA+TGG + chr1_2:60546879-60546898 Msa0081840:intron 40.0%
TAGATCAGGTATGTTTGGGT+TGG + chr1_2:60546939-60546958 Msa0081840:intron 40.0%
! TTACGGTATGTCTGGAATTG+TGG - chr1_2:60547070-60547089 None:intergenic 40.0%
! AAGTGCTAACAAACTTGCTC+TGG - chr1_2:60547223-60547242 None:intergenic 40.0%
AAAGTTGCCGCTATAATGGT+TGG + chr1_2:60547335-60547354 Msa0081840:CDS 40.0%
AGACTCACCAACCATTATAG+CGG - chr1_2:60547345-60547364 None:intergenic 40.0%
!! TCACTAGCTTGTTACGTTCA+GGG - chr1_2:60547411-60547430 None:intergenic 40.0%
ACTTACTTGTCAATGGCTCA+TGG + chr1_2:60547489-60547508 Msa0081840:CDS 40.0%
CTTACTTGTCAATGGCTCAT+GGG + chr1_2:60547490-60547509 Msa0081840:CDS 40.0%
! GTCTACAGAATTGACTTTGC+AGG - chr1_2:60547518-60547537 None:intergenic 40.0%
ATGGAACCTCATGGAATAGT+GGG + chr1_2:60547545-60547564 Msa0081840:CDS 40.0%
AGTCATAAACACACAGCGAA+AGG - chr1_2:60547584-60547603 None:intergenic 40.0%
TGTCGAAAGATGCAAGTATC+TGG + chr1_2:60547667-60547686 Msa0081840:CDS 40.0%
AACCTGTGTTGGAAACTTAC+AGG - chr1_2:60547726-60547745 None:intergenic 40.0%
GAAGAATCACTAACCTGTGT+TGG - chr1_2:60547737-60547756 None:intergenic 40.0%
! GATATCTAGAGTTTGACCGA+GGG + chr1_2:60547816-60547835 Msa0081840:intron 40.0%
GACCGAGGGTAACAAAATTA+TGG + chr1_2:60547830-60547849 Msa0081840:intron 40.0%
! GGCCATAATTTTGTTACCCT+CGG - chr1_2:60547835-60547854 None:intergenic 40.0%
ATCCTGACTGAAACAATCAC+TGG - chr1_2:60547856-60547875 None:intergenic 40.0%
GACCTTCTTCAAGGATCATA+TGG + chr1_2:60548041-60548060 Msa0081840:intron 40.0%
TCCCATATGATCCTTGAAGA+AGG - chr1_2:60548046-60548065 None:intergenic 40.0%
TATGGGAGTTCCATTACTCA+TGG + chr1_2:60548059-60548078 Msa0081840:CDS 40.0%
! CTTTGCTGATTATAGCTGTC+AGG + chr1_2:60548089-60548108 Msa0081840:CDS 40.0%
!! AATCTTCGTAGGGAAGCATT+TGG - chr1_2:60548276-60548295 None:intergenic 40.0%
AAATGCTTCCCTACGAAGAT+TGG + chr1_2:60548275-60548294 Msa0081840:CDS 40.0%
ATATGTTCATGTCTTTGGGC+AGG - chr1_2:60548325-60548344 None:intergenic 40.0%
TTGGAGCTAGAATGTGCAAA+AGG - chr1_2:60548396-60548415 None:intergenic 40.0%
! CTCCAACTTGTCTTTGAAGA+TGG + chr1_2:60548410-60548429 Msa0081840:three_prime_UTR 40.0%
! GTCTTTGAAGATGGAACTGA+AGG + chr1_2:60548419-60548438 Msa0081840:three_prime_UTR 40.0%
! TAACTCTCCGCGTTTGCTAA+GGG - chr1_2:60545792-60545811 None:intergenic 45.0%
! TTAACTCTCCGCGTTTGCTA+AGG - chr1_2:60545793-60545812 None:intergenic 45.0%
CGGAGAGTTAAAGTGAAGTG+TGG + chr1_2:60545802-60545821 Msa0081840:five_prime_UTR 45.0%
! GCGCTAAGTATTGTTGTTGG+CGG + chr1_2:60545872-60545891 Msa0081840:CDS 45.0%
! GCAGAAGATGCAAACCGTTT+TGG - chr1_2:60545990-60546009 None:intergenic 45.0%
! GTTTCGCACCAAATTGGTTC+AGG + chr1_2:60546135-60546154 Msa0081840:CDS 45.0%
CTCCGATACCATAGAAGCTA+CGG + chr1_2:60546355-60546374 Msa0081840:CDS 45.0%
CGGTGTATGTGTATCCAAAC+AGG + chr1_2:60546736-60546755 Msa0081840:intron 45.0%
!! TCTCTTTCTAAGGCCCTGTT+TGG - chr1_2:60546753-60546772 None:intergenic 45.0%
! GGCAAAGATCTCCACCATTT+TGG + chr1_2:60546900-60546919 Msa0081840:intron 45.0%
!! ATCAGGTATGTTTGGGTTGG+TGG + chr1_2:60546942-60546961 Msa0081840:intron 45.0%
TAGAGCTCCAAAAGGAATGG+AGG - chr1_2:60547284-60547303 None:intergenic 45.0%
ATGCTCATAGCTCCTATAGG+TGG + chr1_2:60547308-60547327 Msa0081840:CDS 45.0%
AGGCAAAGTTGCCGCTATAA+TGG + chr1_2:60547331-60547350 Msa0081840:CDS 45.0%
!! CACTAGCTTGTTACGTTCAG+GGG - chr1_2:60547410-60547429 None:intergenic 45.0%
!! CTCACTAGCTTGTTACGTTC+AGG - chr1_2:60547412-60547431 None:intergenic 45.0%
ACCTATCAGATGGAACCTCA+TGG + chr1_2:60547536-60547555 Msa0081840:CDS 45.0%
TCCATGAGGTTCCATCTGAT+AGG - chr1_2:60547540-60547559 None:intergenic 45.0%
GATGGAACCTCATGGAATAG+TGG + chr1_2:60547544-60547563 Msa0081840:CDS 45.0%
TGGAACCTCATGGAATAGTG+GGG + chr1_2:60547546-60547565 Msa0081840:CDS 45.0%
CGAAAGATGCAAGTATCTGG+AGG + chr1_2:60547670-60547689 Msa0081840:CDS 45.0%
CACCTGTAAGTTTCCAACAC+AGG + chr1_2:60547721-60547740 Msa0081840:intron 45.0%
ATATCCCTTCCCATGAGAAC+TGG - chr1_2:60547801-60547820 None:intergenic 45.0%
! GGATATCTAGAGTTTGACCG+AGG + chr1_2:60547815-60547834 Msa0081840:intron 45.0%
AACATTTGAGTCCGATCCCT+TGG + chr1_2:60547924-60547943 Msa0081840:intron 45.0%
AAGTTGGGCTCCATGAGTAA+TGG - chr1_2:60548072-60548091 None:intergenic 45.0%
TTTGGACATGCTTCCAAGCA+AGG - chr1_2:60548258-60548277 None:intergenic 45.0%
TCTGGAAGCCAATCTTCGTA+GGG - chr1_2:60548286-60548305 None:intergenic 45.0%
! TTCTGGAAGCCAATCTTCGT+AGG - chr1_2:60548287-60548306 None:intergenic 45.0%
!! AGATTGGCTTCCAGAAACAC+AGG + chr1_2:60548291-60548310 Msa0081840:CDS 45.0%
CTAGAATGTGCAAAAGGCTG+TGG - chr1_2:60548390-60548409 None:intergenic 45.0%
TGAAGATGGAACTGAAGGCT+TGG + chr1_2:60548424-60548443 Msa0081840:three_prime_UTR 45.0%
GAAGATGGAACTGAAGGCTT+GGG + chr1_2:60548425-60548444 Msa0081840:three_prime_UTR 45.0%
GAACTGAAGGCTTGGGTAAT+GGG + chr1_2:60548432-60548451 Msa0081840:three_prime_UTR 45.0%
! AACTCTCCGCGTTTGCTAAG+GGG - chr1_2:60545791-60545810 None:intergenic 50.0%
GTTAACTGGAAGGGGCTGTT+AGG - chr1_2:60546164-60546183 None:intergenic 50.0%
CTCATAGCTCCTATAGGTGG+AGG + chr1_2:60547311-60547330 Msa0081840:CDS 50.0%
GCAACTTTGCCTCCACCTAT+AGG - chr1_2:60547323-60547342 None:intergenic 50.0%
GATCACCCCACTATTCCATG+AGG - chr1_2:60547554-60547573 None:intergenic 50.0%
CTGGAGGAAAGCAAGTGTGT+TGG + chr1_2:60547686-60547705 Msa0081840:intron 50.0%
TCTTAAGCCGCCAGTTCTCA+TGG + chr1_2:60547788-60547807 Msa0081840:intron 50.0%
CTTAAGCCGCCAGTTCTCAT+GGG + chr1_2:60547789-60547808 Msa0081840:intron 50.0%
GGCCAGTGATTGTTTCAGTC+AGG + chr1_2:60547851-60547870 Msa0081840:intron 50.0%
GTGTCATCTTCAGGAAGTGG+GGG - chr1_2:60548222-60548241 None:intergenic 50.0%
! GGTGTCATCTTCAGGAAGTG+GGG - chr1_2:60548223-60548242 None:intergenic 50.0%
!! CGGTGTCATCTTCAGGAAGT+GGG - chr1_2:60548224-60548243 None:intergenic 50.0%
!! ACGGTGTCATCTTCAGGAAG+TGG - chr1_2:60548225-60548244 None:intergenic 50.0%
!! TTCAGGACGGTGTCATCTTC+AGG - chr1_2:60548231-60548250 None:intergenic 50.0%
TGAAGATGACACCGTCCTGA+AGG + chr1_2:60548230-60548249 Msa0081840:CDS 50.0%
GGAACTGAAGGCTTGGGTAA+TGG + chr1_2:60548431-60548450 Msa0081840:three_prime_UTR 50.0%
TTGCTAAGGGGACCGCTTAC+CGG - chr1_2:60545779-60545798 None:intergenic 55.0%
GGATGGGACTCGAAGAAACC+TGG + chr1_2:60546278-60546297 Msa0081840:CDS 55.0%
!! GTTTGGGTTGGTGGCTAGAG+TGG + chr1_2:60546951-60546970 Msa0081840:intron 55.0%
!! GGTTGGTGGCTAGAGTGGAA+TGG + chr1_2:60546956-60546975 Msa0081840:intron 55.0%
TCCCTTCCCATGAGAACTGG+CGG - chr1_2:60547798-60547817 None:intergenic 55.0%
CAAGCAAGGCTCCTTCAGGA+CGG - chr1_2:60548244-60548263 None:intergenic 55.0%
CTTCCAAGCAAGGCTCCTTC+AGG - chr1_2:60548248-60548267 None:intergenic 55.0%
GGCAGTCACACCTGTGTTTC+TGG - chr1_2:60548304-60548323 None:intergenic 55.0%
AGCGGTCCCCTTAGCAAACG+CGG + chr1_2:60545782-60545801 Msa0081840:five_prime_UTR 60.0%
AGCCGCCAGTTCTCATGGGA+AGG + chr1_2:60547793-60547812 Msa0081840:intron 60.0%
GCCGCCAGTTCTCATGGGAA+GGG + chr1_2:60547794-60547813 Msa0081840:intron 60.0%
CGTCCTGAAGGAGCCTTGCT+TGG + chr1_2:60548242-60548261 Msa0081840:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 60545772 60548640 60545772 ID=Msa0081840;Name=Msa0081840
chr1_2 mRNA 60545772 60548640 60545772 ID=Msa0081840-mRNA-1;Parent=Msa0081840;Name=Msa0081840-mRNA-1;_AED=0.19;_eAED=0.19;_QI=94|0.57|0.62|1|0.71|0.62|8|302|271
chr1_2 exon 60545772 60545994 60545772 ID=Msa0081840-mRNA-1:exon:19729;Parent=Msa0081840-mRNA-1
chr1_2 exon 60546067 60546156 60546067 ID=Msa0081840-mRNA-1:exon:19730;Parent=Msa0081840-mRNA-1
chr1_2 exon 60546272 60546376 60546272 ID=Msa0081840-mRNA-1:exon:19731;Parent=Msa0081840-mRNA-1
chr1_2 exon 60547224 60547356 60547224 ID=Msa0081840-mRNA-1:exon:19732;Parent=Msa0081840-mRNA-1
chr1_2 exon 60547476 60547589 60547476 ID=Msa0081840-mRNA-1:exon:19733;Parent=Msa0081840-mRNA-1
chr1_2 exon 60547662 60547699 60547662 ID=Msa0081840-mRNA-1:exon:19734;Parent=Msa0081840-mRNA-1
chr1_2 exon 60548042 60548110 60548042 ID=Msa0081840-mRNA-1:exon:19735;Parent=Msa0081840-mRNA-1
chr1_2 exon 60548201 60548640 60548201 ID=Msa0081840-mRNA-1:exon:19736;Parent=Msa0081840-mRNA-1
chr1_2 five_prime_UTR 60545772 60545865 60545772 ID=Msa0081840-mRNA-1:five_prime_utr;Parent=Msa0081840-mRNA-1
chr1_2 CDS 60545866 60545994 60545866 ID=Msa0081840-mRNA-1:cds;Parent=Msa0081840-mRNA-1
chr1_2 CDS 60546067 60546156 60546067 ID=Msa0081840-mRNA-1:cds;Parent=Msa0081840-mRNA-1
chr1_2 CDS 60546272 60546376 60546272 ID=Msa0081840-mRNA-1:cds;Parent=Msa0081840-mRNA-1
chr1_2 CDS 60547224 60547356 60547224 ID=Msa0081840-mRNA-1:cds;Parent=Msa0081840-mRNA-1
chr1_2 CDS 60547476 60547589 60547476 ID=Msa0081840-mRNA-1:cds;Parent=Msa0081840-mRNA-1
chr1_2 CDS 60547662 60547699 60547662 ID=Msa0081840-mRNA-1:cds;Parent=Msa0081840-mRNA-1
chr1_2 CDS 60548042 60548110 60548042 ID=Msa0081840-mRNA-1:cds;Parent=Msa0081840-mRNA-1
chr1_2 CDS 60548201 60548338 60548201 ID=Msa0081840-mRNA-1:cds;Parent=Msa0081840-mRNA-1
chr1_2 three_prime_UTR 60548339 60548640 60548339 ID=Msa0081840-mRNA-1:three_prime_utr;Parent=Msa0081840-mRNA-1
Gene Sequence

>Msa0081840

ATGAAGGCGCTAAGTATTGTTGTTGGCGGTGTTCCAATTCCAACGCTTTGTTCTAATGGAATTCGTAAACGTCAGTTCTGCGTTTCAGCTTCTTCTTCTTCTTCTTCATCTTCATCAGGACCCAAAACGGTGGGAGTTGCAGCAGCTTCAAAGAGTGAATACAAGCCTGGGGTTATTGATGATTTGTTCCTCAATTTGTTTCGCACCAAATTGGTTCAGGAAGTGGGATGGGACTCGAAGAAACCTGGATATGACGGACTAATTGAAGTTGCTAACCGTCTAATGATGAAAGGCACTACAAACTCCGATACCATAGAAGCTACGAGCAAGTTTGTTAGCACTTATGTCTTGTTACAGGTACGAATTTTGAGGTCTTTGTTTCCTCCATTCCTTTTGGAGCTCTATAAAATGCTCATAGCTCCTATAGGTGGAGGCAAAGTTGCCGCTATAATGGTTGCAAGGGTTACTGCACTTACTTGTCAATGGCTCATGGGACCCTGCAAAGTCAATTCTGTAGACCTATCAGATGGAACCTCATGGAATAGTGGGGTGATCACTTATACCTTTCGCTGTGCATGTCGAAAGATGCAAGTATCTGGAGGAAAGCAAACCTTCTTCAAGGATCATATGGGAGTTCCATTACTCATGGAGCCCAACTTTGCTGATTATAGCTGTCAGTTCAAATTCGGAGTTCTTCCCCCACTTCCTGAAGATGACACCGTCCTGAAGGAGCCTTGCTTGGAAGCATGTCCAAATGCTTCCCTACGAAGATTGGCTTCCAGAAACACAGGTGTGACTGCCTGCCCAAAGACATGA

Protein sequence

>Msa0081840

MKALSIVVGGVPIPTLCSNGIRKRQFCVSASSSSSSSSSGPKTVGVAAASKSEYKPGVIDDLFLNLFRTKLVQEVGWDSKKPGYDGLIEVANRLMMKGTTNSDTIEATSKFVSTYVLLQVRILRSLFPPFLLELYKMLIAPIGGGKVAAIMVARVTALTCQWLMGPCKVNSVDLSDGTSWNSGVITYTFRCACRKMQVSGGKQTFFKDHMGVPLLMEPNFADYSCQFKFGVLPPLPEDDTVLKEPCLEACPNASLRRLASRNTGVTACPKT*