AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1359620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1359620 MtrunA17_Chr1g0150061 98.305 236 4 0 1 236 1 236 4.69e-172 473
Msa1359620 MtrunA17_Chr8g0386721 72.289 166 46 0 71 236 2 167 1.17e-86 254
Msa1359620 MtrunA17_Chr8g0391921 66.667 162 54 0 75 236 63 224 6.83e-79 236
Msa1359620 MtrunA17_Chr7g0259611 62.424 165 62 0 71 235 4 168 4.14e-76 227
Msa1359620 MtrunA17_Chr8g0386731 63.750 160 58 0 77 236 12 171 2.53e-73 220
Msa1359620 MtrunA17_Chr1g0185791 53.659 164 75 1 72 234 5 168 2.09e-63 195
Msa1359620 MtrunA17_Chr5g0397561 56.250 160 69 1 77 235 10 169 7.52e-61 189
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1359620 AT2G25080.1 69.863 219 65 1 18 236 19 236 1.50e-109 315
Msa1359620 AT4G31870.1 67.532 231 74 1 6 236 4 233 4.92e-106 306
Msa1359620 AT4G11600.1 74.214 159 41 0 77 235 71 229 3.67e-85 253
Msa1359620 AT2G43350.2 68.553 159 50 0 78 236 47 205 6.36e-78 233
Msa1359620 AT2G43350.1 68.553 159 50 0 78 236 47 205 6.36e-78 233
Msa1359620 AT2G31570.1 67.296 159 52 0 77 235 7 165 3.56e-77 230
Msa1359620 AT1G63460.1 60.759 158 62 0 77 234 7 164 8.90e-73 219
Msa1359620 AT3G63080.1 61.146 157 61 0 79 235 14 170 2.21e-68 208
Msa1359620 AT2G48150.1 56.790 162 70 0 73 234 6 167 3.62e-66 202
Msa1359620 AT2G48150.2 58.865 141 58 0 94 234 1 141 2.07e-59 184
Msa1359620 AT4G31870.2 49.618 131 65 1 6 136 4 133 1.15e-30 112

Find 51 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCAAACCTTATCGAAAAT+TGG 0.195624 tig0016715:+335337 None:intergenic
AACTGTACTTCCAAAATTAT+TGG 0.223112 tig0016715:+338394 None:intergenic
GTAGAACAGGTTGATGTAAA+TGG 0.227839 tig0016715:-335252 Msa1359620:intron
CTGAAATTTAACGAAAATTC+TGG 0.260514 tig0016715:+334568 None:intergenic
GCTTTCCCTTGCAATCAATT+TGG 0.263308 tig0016715:-335427 Msa1359620:CDS
CTTGACAGTAAAATCATAAA+TGG 0.263502 tig0016715:+338109 None:intergenic
ACAGTCTCTGCCACACAAAA+TGG 0.310443 tig0016715:-338360 Msa1359620:exon
TACTTGCTGCGTGAAAATTT+AGG 0.333296 tig0016715:-334766 Msa1359620:exon
AAAGGGAAAGTGTTCATATA+TGG 0.355645 tig0016715:-334591 Msa1359620:three_prime_UTR
TTCACGCAGCAAGTAACTTC+TGG 0.359704 tig0016715:+334774 None:intergenic
TCTATAGTGTAGTAGTGAAT+AGG 0.364533 tig0016715:+334646 None:intergenic
CAGTTTCTGAAGTCAAGTTC+TGG 0.365037 tig0016715:-335207 Msa1359620:CDS
GACTTCAGAAACTGGTATAC+TGG 0.374167 tig0016715:+335216 None:intergenic
TTAATTTCTTCATTTGATCC+AGG 0.410664 tig0016715:+335394 None:intergenic
TGGTATACTGGAGCAGTAAA+TGG 0.415807 tig0016715:+335228 None:intergenic
TTAGACTTCAAAACAGCCTT+AGG 0.415949 tig0016715:+338170 None:intergenic
CAGAACTTGACTTCAGAAAC+TGG 0.419102 tig0016715:+335208 None:intergenic
GTACCATGCTTTATCACTAA+AGG 0.425930 tig0016715:-334609 Msa1359620:three_prime_UTR
ATTTATATTCAAAAGTTTGA+AGG 0.429700 tig0016715:+334513 None:intergenic
TACCATGCTTTATCACTAAA+GGG 0.451711 tig0016715:-334608 Msa1359620:three_prime_UTR
TAACATACCTCAATTTGAAA+AGG 0.452584 tig0016715:+335090 None:intergenic
TTGCAATCAATTTGGCATGC+AGG 0.453941 tig0016715:-335419 Msa1359620:CDS
ATTTGAAAAGGAGAGGTTGT+TGG 0.461689 tig0016715:+335102 None:intergenic
CAATTTGGCATGCAGGAGCC+TGG 0.464234 tig0016715:-335412 Msa1359620:CDS
ACAAAAGGCAAAGAAATTGA+AGG 0.466437 tig0016715:+338266 None:intergenic
TTCCCCTTGAATTTGCTAAG+AGG 0.483787 tig0016715:+337331 None:intergenic
TGTGCCTCTTAGCAAATTCA+AGG 0.492645 tig0016715:-337335 Msa1359620:CDS
GCCACACAAAATGGTTTCCA+TGG 0.508212 tig0016715:-338351 Msa1359620:exon
TGAAAAGGAGAGGTTGTTGG+TGG 0.511106 tig0016715:+335105 None:intergenic
AAGAGGTGTGAAGAAGGTTG+TGG 0.519675 tig0016715:+338322 None:intergenic
TGGCAGAGACTGTGAATTGA+TGG 0.528046 tig0016715:+338370 None:intergenic
TGCATGCCAAATTGATTGCA+AGG 0.530005 tig0016715:+335421 None:intergenic
TTAAGAAATTTGCTTGCACT+AGG 0.553262 tig0016715:-335375 Msa1359620:CDS
ATCAGAGGCATGCTTGTACA+AGG 0.558429 tig0016715:-334733 Msa1359620:three_prime_UTR
GAAAAGGAGAGGTTGTTGGT+GGG 0.561717 tig0016715:+335106 None:intergenic
TTAGGAAAATCGAAAGAGGT+TGG 0.563898 tig0016715:+338188 None:intergenic
TTCCCTTTAGTGATAAAGCA+TGG 0.565314 tig0016715:+334606 None:intergenic
TACCTCAATTTGAAAAGGAG+AGG 0.573842 tig0016715:+335095 None:intergenic
GAAGGTTGTGGAAGAAGCCA+TGG 0.574467 tig0016715:+338334 None:intergenic
TTCTGAAGTCAAGTTCTGGA+GGG 0.576508 tig0016715:-335203 Msa1359620:CDS
TCTTAGCAAATTCAAGGGGA+AGG 0.578922 tig0016715:-337329 Msa1359620:CDS
TTGTCAATGTTGCTTCAAGA+TGG 0.580677 tig0016715:-337297 Msa1359620:intron
TTTCTGAAGTCAAGTTCTGG+AGG 0.598538 tig0016715:-335204 Msa1359620:CDS
GTGCCTCTTAGCAAATTCAA+GGG 0.601868 tig0016715:-337334 Msa1359620:CDS
AGCCTTAGGAAAATCGAAAG+AGG 0.607348 tig0016715:+338184 None:intergenic
GCATGCCAAATTGATTGCAA+GGG 0.608481 tig0016715:+335422 None:intergenic
ATTGTGAAGAGGTGTGAAGA+AGG 0.611184 tig0016715:+338316 None:intergenic
GCTTGATTGAAATTGTGAAG+AGG 0.664846 tig0016715:+338305 None:intergenic
TGCCTCTTAGCAAATTCAAG+GGG 0.679239 tig0016715:-337333 Msa1359620:CDS
TTAGGAATGAGCAAAATCAG+AGG 0.683872 tig0016715:-334748 Msa1359620:three_prime_UTR
TTTGACATCATCAAACTACA+CGG 0.712985 tig0016715:-336660 Msa1359620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATAAAAAATAGAAG+GGG - tig0016715:336069-336088 Msa1359620:intron 10.0%
!!! ATTTCTTATATTTTTTATCA+TGG - tig0016715:336328-336347 Msa1359620:intron 10.0%
!!! GATAATTTGTTAATATGTAT+AGG - tig0016715:334873-334892 Msa1359620:intron 15.0%
!!! TTGTTTTTGTTTTTGTTTTT+TGG - tig0016715:335217-335236 Msa1359620:CDS 15.0%
!!! TTTTCTTCAATTCTAAAAAT+AGG + tig0016715:335487-335506 None:intergenic 15.0%
!! ATTTAAAAGATGTTATTATG+TGG - tig0016715:335515-335534 Msa1359620:intron 15.0%
!! ATTACAAATGAAAAAAAGAA+GGG + tig0016715:335657-335676 None:intergenic 15.0%
!!! TATGAAAATTTTAAAGACAA+AGG - tig0016715:336272-336291 Msa1359620:intron 15.0%
!! AACATAAAAAGTGAAAAATT+AGG - tig0016715:336999-337018 Msa1359620:intron 15.0%
!!! GATTAAGCAAAAAATATTTT+AGG + tig0016715:338065-338084 None:intergenic 15.0%
!! ATTTATATTCAAAAGTTTGA+AGG + tig0016715:338385-338404 None:intergenic 15.0%
!! AACAATTTATTTGTAGCTTA+TGG - tig0016715:334909-334928 Msa1359620:intron 20.0%
!! CATTACAAATGAAAAAAAGA+AGG + tig0016715:335658-335677 None:intergenic 20.0%
!!! TTTTTTCATTTGTAATGTTC+AGG - tig0016715:335661-335680 Msa1359620:intron 20.0%
!!! AAACAAATAGTTCTAAATTG+CGG - tig0016715:335727-335746 Msa1359620:intron 20.0%
!!! AATTTTGTATAACAAACTAG+AGG + tig0016715:335960-335979 None:intergenic 20.0%
!! TTGTTATACAAAATTAGAGT+CGG - tig0016715:335965-335984 Msa1359620:intron 20.0%
!!! ATATTTTTTATCATGGCTAT+TGG - tig0016715:336335-336354 Msa1359620:intron 20.0%
!!! TTATTCTGAATATCTACTTT+TGG - tig0016715:336390-336409 Msa1359620:intron 20.0%
!!! AAACACATGCATTTTATTTT+AGG + tig0016715:336820-336839 None:intergenic 20.0%
!! ATAATATCCTAAATTGCAAA+CGG + tig0016715:336898-336917 None:intergenic 20.0%
!! TAAAAAGTGAAAAATTAGGT+AGG - tig0016715:337003-337022 Msa1359620:intron 20.0%
!! AAAAAGTGAAAAATTAGGTA+GGG - tig0016715:337004-337023 Msa1359620:intron 20.0%
!!! CTTGTTTTGTTTTGTAATTT+GGG - tig0016715:337071-337090 Msa1359620:intron 20.0%
!!! TTGTTTTGTTTTGTAATTTG+GGG - tig0016715:337072-337091 Msa1359620:intron 20.0%
!! CAATGAATTATTAACTAGTT+AGG - tig0016715:337874-337893 Msa1359620:intron 20.0%
!! GTGGATAATGCAATATTTTT+GGG + tig0016715:334472-334491 None:intergenic 25.0%
!! TGTGGATAATGCAATATTTT+TGG + tig0016715:334473-334492 None:intergenic 25.0%
!!! AAATTATTGGTGTGTTTTTG+TGG + tig0016715:334491-334510 None:intergenic 25.0%
!! CAAAAACACACCAATAATTT+TGG - tig0016715:334491-334510 Msa1359620:three_prime_UTR 25.0%
! AACTGTACTTCCAAAATTAT+TGG + tig0016715:334504-334523 None:intergenic 25.0%
!!! AAATCACCTTTTTTTCAACA+TGG - tig0016715:334674-334693 Msa1359620:three_prime_UTR 25.0%
! CTTGACAGTAAAATCATAAA+TGG + tig0016715:334789-334808 None:intergenic 25.0%
!! CATTTATGATTTTACTGTCA+AGG - tig0016715:334787-334806 Msa1359620:intron 25.0%
!!! TAATATGTATAGGTCTTGTT+TGG - tig0016715:334883-334902 Msa1359620:intron 25.0%
! TATTTGTAGCTTATGGTATA+AGG - tig0016715:334916-334935 Msa1359620:intron 25.0%
! ATTTGTAGCTTATGGTATAA+GGG - tig0016715:334917-334936 Msa1359620:intron 25.0%
!!! TGTTGTTTTCATAAGCTATT+TGG - tig0016715:335003-335022 Msa1359620:intron 25.0%
!!! GTTGTTTTCATAAGCTATTT+GGG - tig0016715:335004-335023 Msa1359620:intron 25.0%
! CGTAAGTTGTTTATTATGAT+AGG - tig0016715:335069-335088 Msa1359620:intron 25.0%
!! GTTTATTATGATAGGTTTTG+TGG - tig0016715:335077-335096 Msa1359620:intron 25.0%
! AAAAAAATAGCCAATCCAAA+CGG + tig0016715:335197-335216 None:intergenic 25.0%
! TATTATTCATAAGCTTGTCA+AGG - tig0016715:335271-335290 Msa1359620:intron 25.0%
!!! TATTGACTTTATATTTGCGT+TGG - tig0016715:335631-335650 Msa1359620:intron 25.0%
! TATTCAAGAACAGTAAAACA+GGG + tig0016715:335839-335858 None:intergenic 25.0%
! ATATTCAAGAACAGTAAAAC+AGG + tig0016715:335840-335859 None:intergenic 25.0%
! AATTTGATGTCTTACATTAG+AGG + tig0016715:335920-335939 None:intergenic 25.0%
!! ATTGATTGATTTCCTTTGAA+TGG - tig0016715:336206-336225 Msa1359620:intron 25.0%
!! GAAATCTTTATGTTTTGTGT+TGG - tig0016715:336412-336431 Msa1359620:intron 25.0%
!!! GTTATTGGTATTTTTAGATG+TGG - tig0016715:336494-336513 Msa1359620:intron 25.0%
! TATTCGAAACATTTCTCTAT+AGG - tig0016715:336592-336611 Msa1359620:intron 25.0%
! TTTCCATATAAAGATACGTT+TGG + tig0016715:336618-336637 None:intergenic 25.0%
! TCAAAATGTGTTTGTCAATT+GGG + tig0016715:336713-336732 None:intergenic 25.0%
! TTCAAAATGTGTTTGTCAAT+TGG + tig0016715:336714-336733 None:intergenic 25.0%
!!! ATAAAATGCATGTGTTTTTG+TGG - tig0016715:336823-336842 Msa1359620:intron 25.0%
!!! TAAAATGCATGTGTTTTTGT+GGG - tig0016715:336824-336843 Msa1359620:intron 25.0%
! CCAAATTACAAAACAAAACA+AGG + tig0016715:337073-337092 None:intergenic 25.0%
!!! CCTTGTTTTGTTTTGTAATT+TGG - tig0016715:337070-337089 Msa1359620:intron 25.0%
!!! TTGCATTTTGATTACAATGT+TGG - tig0016715:337187-337206 Msa1359620:intron 25.0%
! ACAAGGAAATTAAAAATGTG+TGG + tig0016715:337419-337438 None:intergenic 25.0%
! TTAATTTCTTCATTTGATCC+AGG + tig0016715:337504-337523 None:intergenic 25.0%
!! AGAATTTCCAATTTTCGATA+AGG - tig0016715:337551-337570 Msa1359620:intron 25.0%
! TATCAAACCTTATCGAAAAT+TGG + tig0016715:337561-337580 None:intergenic 25.0%
! AAATTCTTGGTCGATAAAAA+TGG - tig0016715:337748-337767 Msa1359620:intron 25.0%
! TAACATACCTCAATTTGAAA+AGG + tig0016715:337808-337827 None:intergenic 25.0%
!!! AGTCTAGCTTCTAATTTTTA+TGG - tig0016715:337848-337867 Msa1359620:intron 25.0%
!! AGTATGTCAATATGATTTTC+CGG - tig0016715:337907-337926 Msa1359620:intron 25.0%
! TGAGAGTAATATATCTTTAG+TGG - tig0016715:337943-337962 Msa1359620:intron 25.0%
! TAAGCTGTATTTGATTACAT+CGG - tig0016715:338019-338038 Msa1359620:intron 25.0%
! CTGAAATTTAACGAAAATTC+TGG + tig0016715:338330-338349 None:intergenic 25.0%
ACAAAAGGCAAAGAAATTGA+AGG + tig0016715:334632-334651 None:intergenic 30.0%
! GCAATTGAGGATTTTACAAA+AGG + tig0016715:334647-334666 None:intergenic 30.0%
!! TGATTTTGAAGAAGCAATTG+AGG + tig0016715:334660-334679 None:intergenic 30.0%
GAAAAGCCATGTTGAAAAAA+AGG + tig0016715:334683-334702 None:intergenic 30.0%
TAAGGGTTTATCATGATAAG+TGG - tig0016715:334934-334953 Msa1359620:intron 30.0%
ATGATAAGTGGTTATGAATG+AGG - tig0016715:334946-334965 Msa1359620:intron 30.0%
! TGAATGAGGTGTTTATACAA+CGG - tig0016715:334960-334979 Msa1359620:intron 30.0%
AAAAAATAGCCAATCCAAAC+GGG + tig0016715:335196-335215 None:intergenic 30.0%
!!! CACATAGTTTTGTTGAAGAA+GGG - tig0016715:335459-335478 Msa1359620:intron 30.0%
TTTCATTTGTAATGTTCAGG+AGG - tig0016715:335664-335683 Msa1359620:intron 30.0%
TTCATTTGTAATGTTCAGGA+GGG - tig0016715:335665-335684 Msa1359620:intron 30.0%
! CTAAATCAAGAGCATGAATT+TGG - tig0016715:336011-336030 Msa1359620:intron 30.0%
! TTTCTCCTGCTATTTGAAAA+GGG - tig0016715:336131-336150 Msa1359620:intron 30.0%
GAAAGTTATGTCAAAGTTTC+TGG - tig0016715:336169-336188 Msa1359620:intron 30.0%
TTTGACATCATCAAACTACA+CGG - tig0016715:336235-336254 Msa1359620:intron 30.0%
TAGAGAAATGTTTCGAATAG+AGG + tig0016715:336591-336610 None:intergenic 30.0%
ATCTTTATATGGAAAGCTGT+TGG - tig0016715:336623-336642 Msa1359620:intron 30.0%
AAAATGTGTTTGTCAATTGG+GGG + tig0016715:336711-336730 None:intergenic 30.0%
CAAAATGTGTTTGTCAATTG+GGG + tig0016715:336712-336731 None:intergenic 30.0%
! AACACATTTTGAATCTTGAC+TGG - tig0016715:336721-336740 Msa1359620:intron 30.0%
!! ATAGGATTAGCTTCTGTATA+AGG - tig0016715:336780-336799 Msa1359620:intron 30.0%
!!! ATTTTATTTTAGGTTTCCCC+AGG + tig0016715:336810-336829 None:intergenic 30.0%
!!! TTTTTGGGCAGTTACTTTTA+GGG + tig0016715:337158-337177 None:intergenic 30.0%
ACTAACGTAAGTAGTATATC+AGG - tig0016715:337239-337258 Msa1359620:intron 30.0%
CTAACGTAAGTAGTATATCA+GGG - tig0016715:337240-337259 Msa1359620:intron 30.0%
AGTATATCAGGGTTACTATA+CGG - tig0016715:337251-337270 Msa1359620:intron 30.0%
!! TTGTTGTTTCTCTTTGAACA+TGG - tig0016715:337355-337374 Msa1359620:CDS 30.0%
! TTAAGAAATTTGCTTGCACT+AGG - tig0016715:337520-337539 Msa1359620:intron 30.0%
TGTAATCTATTCTGAACTAC+TGG + tig0016715:337596-337615 None:intergenic 30.0%
TTCTACAAAACTTCAGTACT+TGG + tig0016715:337629-337648 None:intergenic 30.0%
!! GTGGAATTTTGAGAAATTCT+TGG - tig0016715:337735-337754 Msa1359620:intron 30.0%
! CTAGCTTCTAATTTTTATGG+TGG - tig0016715:337851-337870 Msa1359620:intron 30.0%
TCTATAGTGTAGTAGTGAAT+AGG + tig0016715:338252-338271 None:intergenic 30.0%
TACCATGCTTTATCACTAAA+GGG - tig0016715:338287-338306 Msa1359620:CDS 30.0%
!! AAAGGGAAAGTGTTCATATA+TGG - tig0016715:338304-338323 Msa1359620:CDS 30.0%
GCTTGATTGAAATTGTGAAG+AGG + tig0016715:334593-334612 None:intergenic 35.0%
TTAGGAAAATCGAAAGAGGT+TGG + tig0016715:334710-334729 None:intergenic 35.0%
! AACCTCTTTCGATTTTCCTA+AGG - tig0016715:334709-334728 Msa1359620:three_prime_UTR 35.0%
TTAGACTTCAAAACAGCCTT+AGG + tig0016715:334728-334747 None:intergenic 35.0%
!!! GCACATAGTTTTGTTGAAGA+AGG - tig0016715:335458-335477 Msa1359620:intron 35.0%
AAGATGTTATTATGTGGTGC+AGG - tig0016715:335521-335540 Msa1359620:intron 35.0%
! TTGTCAATGTTGCTTCAAGA+TGG - tig0016715:335598-335617 Msa1359620:intron 35.0%
GCATACTTAATACCACTCAT+AGG + tig0016715:335705-335724 None:intergenic 35.0%
!!! AGTTTTAGAAGTTTACGCTG+TGG - tig0016715:335774-335793 Msa1359620:intron 35.0%
GCTCTATTTAAGCATACTTG+AGG - tig0016715:336095-336114 Msa1359620:intron 35.0%
! GTTTCTCCTGCTATTTGAAA+AGG - tig0016715:336130-336149 Msa1359620:intron 35.0%
! ATTAGCCCTTTTCAAATAGC+AGG + tig0016715:336139-336158 None:intergenic 35.0%
! AGACAAAGGTACGTTACTTA+TGG - tig0016715:336286-336305 Msa1359620:intron 35.0%
GTTGGATCCTGTATAAGATT+AGG - tig0016715:336430-336449 Msa1359620:intron 35.0%
CTTCTCTCCTAATCTTATAC+AGG + tig0016715:336440-336459 None:intergenic 35.0%
TGTGAATGAAGTTAACCAAC+TGG - tig0016715:336533-336552 Msa1359620:intron 35.0%
GTGAATGAAGTTAACCAACT+GGG - tig0016715:336534-336553 Msa1359620:intron 35.0%
AGGCCAAACGTATCTTTATA+TGG - tig0016715:336612-336631 Msa1359620:intron 35.0%
!! TGCATGTCCATTTTAACCAA+CGG - tig0016715:336659-336678 Msa1359620:CDS 35.0%
AAATGTGTTTGTCAATTGGG+GGG + tig0016715:336710-336729 None:intergenic 35.0%
TGTCTAATCGTGTCTCAAAT+AGG - tig0016715:336762-336781 Msa1359620:intron 35.0%
CTTCTGTATAAGGATATCCT+GGG - tig0016715:336790-336809 Msa1359620:intron 35.0%
TTCTGTATAAGGATATCCTG+GGG - tig0016715:336791-336810 Msa1359620:intron 35.0%
ATTTCCACCGTTTGCAATTT+AGG - tig0016715:336888-336907 Msa1359620:intron 35.0%
ATATCCTAAATTGCAAACGG+TGG + tig0016715:336895-336914 None:intergenic 35.0%
TAAATGCCAAACAGAAAGCA+GGG + tig0016715:336953-336972 None:intergenic 35.0%
TTAAATGCCAAACAGAAAGC+AGG + tig0016715:336954-336973 None:intergenic 35.0%
GCTTTCTGTTTGGCATTTAA+CGG - tig0016715:336954-336973 Msa1359620:intron 35.0%
AAGTGAACTAGTGAAGAAGA+TGG - tig0016715:337031-337050 Msa1359620:intron 35.0%
!!! TTTTGGGCAGTTACTTTTAG+GGG + tig0016715:337157-337176 None:intergenic 35.0%
!!! GTTTTTGGGCAGTTACTTTT+AGG + tig0016715:337159-337178 None:intergenic 35.0%
! ATGCAACTATGCACGTTTTT+GGG + tig0016715:337173-337192 None:intergenic 35.0%
! AATGCAACTATGCACGTTTT+TGG + tig0016715:337174-337193 None:intergenic 35.0%
GTATATCAGGGTTACTATAC+GGG - tig0016715:337252-337271 Msa1359620:intron 35.0%
!! GTACTGAAGTTTTGTAGAAC+AGG - tig0016715:337630-337649 Msa1359620:intron 35.0%
!! GTAGAACAGGTTGATGTAAA+TGG - tig0016715:337643-337662 Msa1359620:intron 35.0%
ATTTGAAAAGGAGAGGTTGT+TGG + tig0016715:337796-337815 None:intergenic 35.0%
! AACCTCTCCTTTTCAAATTG+AGG - tig0016715:337798-337817 Msa1359620:intron 35.0%
TACCTCAATTTGAAAAGGAG+AGG + tig0016715:337803-337822 None:intergenic 35.0%
! AGCTAGACTTTTGATGTTGT+TGG + tig0016715:337837-337856 None:intergenic 35.0%
! CTCTCATCTTCAATTTTGTC+CGG + tig0016715:337929-337948 None:intergenic 35.0%
CTTCTGCAAAAATGTGAAAC+GGG + tig0016715:338096-338115 None:intergenic 35.0%
CCTTCTGCAAAAATGTGAAA+CGG + tig0016715:338097-338116 None:intergenic 35.0%
! TACTTGCTGCGTGAAAATTT+AGG - tig0016715:338129-338148 Msa1359620:CDS 35.0%
TTAGGAATGAGCAAAATCAG+AGG - tig0016715:338147-338166 Msa1359620:CDS 35.0%
GTACCATGCTTTATCACTAA+AGG - tig0016715:338286-338305 Msa1359620:CDS 35.0%
TTCCCTTTAGTGATAAAGCA+TGG + tig0016715:338292-338311 None:intergenic 35.0%
! ATTGTGAAGAGGTGTGAAGA+AGG + tig0016715:334582-334601 None:intergenic 40.0%
AGCCTTAGGAAAATCGAAAG+AGG + tig0016715:334714-334733 None:intergenic 40.0%
!! GCTGTTTTCGTAAGCTATCT+TGG - tig0016715:335161-335180 Msa1359620:CDS 40.0%
GTAAGCTATCTTGGAGAACA+GGG - tig0016715:335170-335189 Msa1359620:CDS 40.0%
TAAACATTGCGAGACTGTCT+GGG + tig0016715:335401-335420 None:intergenic 40.0%
ATAAACATTGCGAGACTGTC+TGG + tig0016715:335402-335421 None:intergenic 40.0%
TGCAGATAAGCCAATCGAAA+CGG - tig0016715:335435-335454 Msa1359620:CDS 40.0%
TGTGCCTCTTAGCAAATTCA+AGG - tig0016715:335560-335579 Msa1359620:intron 40.0%
GTGCCTCTTAGCAAATTCAA+GGG - tig0016715:335561-335580 Msa1359620:intron 40.0%
TGCCTCTTAGCAAATTCAAG+GGG - tig0016715:335562-335581 Msa1359620:intron 40.0%
!! TTCCCCTTGAATTTGCTAAG+AGG + tig0016715:335567-335586 None:intergenic 40.0%
TCTTAGCAAATTCAAGGGGA+AGG - tig0016715:335566-335585 Msa1359620:intron 40.0%
TGTAATGTTCAGGAGGGATT+TGG - tig0016715:335671-335690 Msa1359620:intron 40.0%
TTAGAGGAGTGAGAAAGTGA+TGG + tig0016715:335904-335923 None:intergenic 40.0%
! TAGAGGTGTGTGTAACTAAG+GGG + tig0016715:335943-335962 None:intergenic 40.0%
! CTAGAGGTGTGTGTAACTAA+GGG + tig0016715:335944-335963 None:intergenic 40.0%
! ACTAGAGGTGTGTGTAACTA+AGG + tig0016715:335945-335964 None:intergenic 40.0%
CAAAATTAGAGTCGGTGACT+TGG - tig0016715:335973-335992 Msa1359620:intron 40.0%
! TTTGGTGCATCCAACAAGTT+AGG - tig0016715:336029-336048 Msa1359620:intron 40.0%
TTGGTGCATCCAACAAGTTA+GGG - tig0016715:336030-336049 Msa1359620:intron 40.0%
TGATTTCCTTTGAATGGCAG+CGG - tig0016715:336212-336231 Msa1359620:intron 40.0%
ATTGGTCACTACCTGTTATC+TGG - tig0016715:336353-336372 Msa1359620:intron 40.0%
AGCTACAAGATCCAGATAAC+AGG + tig0016715:336367-336386 None:intergenic 40.0%
CTGAGTTTCAATAGGAAGGA+AGG + tig0016715:336468-336487 None:intergenic 40.0%
CTTCCTTCCTATTGAAACTC+AGG - tig0016715:336466-336485 Msa1359620:intron 40.0%
ATGCCTGAGTTTCAATAGGA+AGG + tig0016715:336472-336491 None:intergenic 40.0%
TCCTATTGAAACTCAGGCAT+AGG - tig0016715:336472-336491 Msa1359620:intron 40.0%
ACCTATGCCTGAGTTTCAAT+AGG + tig0016715:336476-336495 None:intergenic 40.0%
GAAACTCAGGCATAGGTTAT+TGG - tig0016715:336479-336498 Msa1359620:intron 40.0%
CCATATCATCATATCCCAGT+TGG + tig0016715:336551-336570 None:intergenic 40.0%
CCAACTGGGATATGATGATA+TGG - tig0016715:336548-336567 Msa1359620:intron 40.0%
!! GCATGTCCATTTTAACCAAC+GGG - tig0016715:336660-336679 Msa1359620:CDS 40.0%
!! CATGTCCATTTTAACCAACG+GGG - tig0016715:336661-336680 Msa1359620:CDS 40.0%
GCTTCTGTATAAGGATATCC+TGG - tig0016715:336789-336808 Msa1359620:intron 40.0%
CGGTGGAAATAAAGCAAGAT+AGG + tig0016715:336878-336897 None:intergenic 40.0%
AAATGCCAAACAGAAAGCAG+GGG + tig0016715:336952-336971 None:intergenic 40.0%
! ATTTAACGGTGTGCTTGTTG+TGG - tig0016715:336968-336987 Msa1359620:intron 40.0%
!!! TTTGGGCAGTTACTTTTAGG+GGG + tig0016715:337156-337175 None:intergenic 40.0%
! GGTGCTGAAGAATTTGCAAA+AGG - tig0016715:337208-337227 Msa1359620:intron 40.0%
TCGCTTTCGAATGTATCGTT+TGG + tig0016715:337315-337334 None:intergenic 40.0%
! TCCTTGTGCATTTTCTTTCC+AGG - tig0016715:337432-337451 Msa1359620:intron 40.0%
ACCTGGAAAGAAAATGCACA+AGG + tig0016715:337436-337455 None:intergenic 40.0%
! GTGCATTTTCTTTCCAGGTT+TGG - tig0016715:337437-337456 Msa1359620:intron 40.0%
AAAGCTAGAATCTCCAAACC+TGG + tig0016715:337453-337472 None:intergenic 40.0%
GCTTTCCCTTGCAATCAATT+TGG - tig0016715:337468-337487 Msa1359620:intron 40.0%
GCATGCCAAATTGATTGCAA+GGG + tig0016715:337476-337495 None:intergenic 40.0%
TGCATGCCAAATTGATTGCA+AGG + tig0016715:337477-337496 None:intergenic 40.0%
TTGCAATCAATTTGGCATGC+AGG - tig0016715:337476-337495 Msa1359620:intron 40.0%
TGGTATACTGGAGCAGTAAA+TGG + tig0016715:337670-337689 None:intergenic 40.0%
GACTTCAGAAACTGGTATAC+TGG + tig0016715:337682-337701 None:intergenic 40.0%
CAGAACTTGACTTCAGAAAC+TGG + tig0016715:337690-337709 None:intergenic 40.0%
!! CAGTTTCTGAAGTCAAGTTC+TGG - tig0016715:337688-337707 Msa1359620:intron 40.0%
!! TTTCTGAAGTCAAGTTCTGG+AGG - tig0016715:337691-337710 Msa1359620:intron 40.0%
!! TTCTGAAGTCAAGTTCTGGA+GGG - tig0016715:337692-337711 Msa1359620:intron 40.0%
!!! TCAAGTTCTGGAGGGTTTTT+CGG - tig0016715:337700-337719 Msa1359620:intron 40.0%
! TTTTCGGTGATCTTGTCAAG+TGG - tig0016715:337716-337735 Msa1359620:intron 40.0%
! CCGTTTCACATTTTTGCAGA+AGG - tig0016715:338094-338113 Msa1359620:intron 40.0%
TGGCAGAGACTGTGAATTGA+TGG + tig0016715:334528-334547 None:intergenic 45.0%
ACAGTCTCTGCCACACAAAA+TGG - tig0016715:334535-334554 Msa1359620:three_prime_UTR 45.0%
GCCACACAAAATGGTTTCCA+TGG - tig0016715:334544-334563 Msa1359620:three_prime_UTR 45.0%
! GCCATGGAAACCATTTTGTG+TGG + tig0016715:334548-334567 None:intergenic 45.0%
! AAGAGGTGTGAAGAAGGTTG+TGG + tig0016715:334576-334595 None:intergenic 45.0%
CGTAAGCTATCTTGGAGAAC+AGG - tig0016715:335169-335188 Msa1359620:CDS 45.0%
GCTTATCTGCACTCATCTAC+TGG + tig0016715:335426-335445 None:intergenic 45.0%
GCAGATAAGCCAATCGAAAC+GGG - tig0016715:335436-335455 Msa1359620:CDS 45.0%
AACTATGTGCCCGTTTCGAT+TGG + tig0016715:335448-335467 None:intergenic 45.0%
TTGGACTCACTTCCTATGAG+TGG - tig0016715:335690-335709 Msa1359620:intron 45.0%
TGGTATCACAACCACAGTTG+TGG - tig0016715:335794-335813 Msa1359620:intron 45.0%
AGGGATAAATGCGACAGATG+CGG + tig0016715:335820-335839 None:intergenic 45.0%
! GACTCAACACCCTAACTTGT+TGG + tig0016715:336042-336061 None:intergenic 45.0%
! CTCAACCCCGTTGGTTAAAA+TGG + tig0016715:336669-336688 None:intergenic 45.0%
TCATTCCCCTGCTTTCTGTT+TGG - tig0016715:336944-336963 Msa1359620:intron 45.0%
!!! TTGGGCAGTTACTTTTAGGG+GGG + tig0016715:337155-337174 None:intergenic 45.0%
GAAAAGGAGAGGTTGTTGGT+GGG + tig0016715:337792-337811 None:intergenic 45.0%
TGAAAAGGAGAGGTTGTTGG+TGG + tig0016715:337793-337812 None:intergenic 45.0%
TTCACGCAGCAAGTAACTTC+TGG + tig0016715:338124-338143 None:intergenic 45.0%
! ATCAGAGGCATGCTTGTACA+AGG - tig0016715:338162-338181 Msa1359620:CDS 45.0%
!! TTAAAAAAATAAAAAATAGA+AGG - tig0016715:336067-336086 Msa1359620:intron 5.0%
!! TAAAAAAATAAAAAATAGAA+GGG - tig0016715:336068-336087 Msa1359620:intron 5.0%
GAAGGTTGTGGAAGAAGCCA+TGG + tig0016715:334564-334583 None:intergenic 50.0%
GTCAAACCGCTGCCATTCAA+AGG + tig0016715:336221-336240 None:intergenic 50.0%
GAACATGAGTGAGCTCTTGC+TGG - tig0016715:337274-337293 Msa1359620:intron 50.0%
AGAACAGGGCCCGTTTGGAT+TGG - tig0016715:335184-335203 Msa1359620:CDS 55.0%
TCTGCTAGACTCAACCCCGT+TGG + tig0016715:336678-336697 None:intergenic 55.0%
!! CGGTGTGCTTGTTGTGGAGA+TGG - tig0016715:336974-336993 Msa1359620:intron 55.0%
CAATTTGGCATGCAGGAGCC+TGG - tig0016715:337483-337502 Msa1359620:intron 55.0%
CTTGGAGAACAGGGCCCGTT+TGG - tig0016715:335179-335198 Msa1359620:CDS 60.0%
GACAGATGCGGCCACAACTG+TGG + tig0016715:335808-335827 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0016715 gene 334463 338454 334463 ID=Msa1359620;Name=Msa1359620
tig0016715 mRNA 334463 338454 334463 ID=Msa1359620-mRNA-1;Parent=Msa1359620;Name=Msa1359620-mRNA-1;_AED=0.03;_eAED=0.03;_QI=91|1|1|1|1|1|6|312|236
tig0016715 exon 334463 334804 334463 ID=Msa1359620-mRNA-1:exon:11511;Parent=Msa1359620-mRNA-1
tig0016715 exon 335098 335265 335098 ID=Msa1359620-mRNA-1:exon:11510;Parent=Msa1359620-mRNA-1
tig0016715 exon 335345 335463 335345 ID=Msa1359620-mRNA-1:exon:11509;Parent=Msa1359620-mRNA-1
tig0016715 exon 336624 336685 336624 ID=Msa1359620-mRNA-1:exon:11508;Parent=Msa1359620-mRNA-1
tig0016715 exon 337298 337374 337298 ID=Msa1359620-mRNA-1:exon:11507;Parent=Msa1359620-mRNA-1
tig0016715 exon 338109 338454 338109 ID=Msa1359620-mRNA-1:exon:11506;Parent=Msa1359620-mRNA-1
tig0016715 five_prime_UTR 338364 338454 338364 ID=Msa1359620-mRNA-1:five_prime_utr;Parent=Msa1359620-mRNA-1
tig0016715 CDS 338109 338363 338109 ID=Msa1359620-mRNA-1:cds;Parent=Msa1359620-mRNA-1
tig0016715 CDS 337298 337374 337298 ID=Msa1359620-mRNA-1:cds;Parent=Msa1359620-mRNA-1
tig0016715 CDS 336624 336685 336624 ID=Msa1359620-mRNA-1:cds;Parent=Msa1359620-mRNA-1
tig0016715 CDS 335345 335463 335345 ID=Msa1359620-mRNA-1:cds;Parent=Msa1359620-mRNA-1
tig0016715 CDS 335098 335265 335098 ID=Msa1359620-mRNA-1:cds;Parent=Msa1359620-mRNA-1
tig0016715 CDS 334775 334804 334775 ID=Msa1359620-mRNA-1:cds;Parent=Msa1359620-mRNA-1
tig0016715 three_prime_UTR 334463 334774 334463 ID=Msa1359620-mRNA-1:three_prime_utr;Parent=Msa1359620-mRNA-1
Gene Sequence

>Msa1359620

ATGGTTTCCATGGCTTCTTCCACAACCTTCTTCACACCTCTTCACAATTTCAATCAAGCTAGAACAAACTCAACACCTTCAATTTCTTTGCCTTTTGTAAAATCCTCAATTGCTTCTTCAAAATCACCTTTTTTTCAACATGGCTTTTCTCAACCAACCTCTTTCGATTTTCCTAAGGCTGTTTTGAAGTCTAAGTCTTTCTCAGTCAACGCTAGAGCTGTTACTGATAAATCCATTTATGATTTTACTGTCAAGGATATTGATAAGAAAGATGTGCCTCTTAGCAAATTCAAGGGGAAGGTTCTTTTGATTGTCAATGTTGCTTCAAGATGCGGTTTGACATCATCAAACTACACGGAACTCTCACACTTGTATGAAAATTTTAAAGACAAAGGTTTGGAGATTCTAGCTTTCCCTTGCAATCAATTTGGCATGCAGGAGCCTGGATCAAATGAAGAAATTAAGAAATTTGCTTGCACTAGGTTCAAAGCAGAATTTCCAATTTTCGATAAGGTTGATGTAAATGGACCATTTACTGCTCCAGTATACCAGTTTCTGAAGTCAAGTTCTGGAGGGTTTTTCGGTGATCTTGTCAAGTGGAATTTTGAGAAATTCTTGGTCGATAAAAATGGAAAAGTTGTTGAACGATACCCACCAACAACCTCTCCTTTTCAAATTGAGAAGGATATCCAGAAGTTACTTGCTGCGTGA

Protein sequence

>Msa1359620

MVSMASSTTFFTPLHNFNQARTNSTPSISLPFVKSSIASSKSPFFQHGFSQPTSFDFPKAVLKSKSFSVNARAVTDKSIYDFTVKDIDKKDVPLSKFKGKVLLIVNVASRCGLTSSNYTELSHLYENFKDKGLEILAFPCNQFGMQEPGSNEEIKKFACTRFKAEFPIFDKVDVNGPFTAPVYQFLKSSSGGFFGDLVKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLAA*