AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0795930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0795930 MtrunA17_Chr5g0399001 96.703 455 15 0 1 455 17 471 0.0 918
Msa0795930 MtrunA17_Chr8g0352461 53.440 436 187 5 17 446 4 429 2.17e-164 470
Msa0795930 MtrunA17_Chr8g0352481 53.302 424 190 4 17 440 4 419 5.40e-161 461
Msa0795930 MtrunA17_Chr3g0091441 47.912 455 212 9 5 446 1 443 1.38e-147 428
Msa0795930 MtrunA17_Chr2g0305211 23.695 249 126 9 15 228 3 222 8.75e-13 70.1
Msa0795930 MtrunA17_Chr2g0305231 23.695 249 126 9 15 228 3 222 8.75e-13 70.1
Msa0795930 MtrunA17_Chr7g0268611 26.087 230 132 7 17 240 8 205 8.77e-13 69.7
Msa0795930 MtrunA17_Chr7g0268621 23.132 281 179 6 17 295 6 251 1.07e-12 69.3
Msa0795930 MtrunA17_Chr7g0262591 24.034 233 135 6 18 241 25 224 1.86e-12 68.9
Msa0795930 MtrunA17_Chr2g0304651 24.016 254 133 10 15 235 3 229 2.17e-12 68.9
Msa0795930 MtrunA17_Chr1g0182991 24.554 224 138 6 19 240 27 221 4.31e-12 67.8
Msa0795930 MtrunA17_Chr2g0304721 24.219 256 130 10 15 235 3 229 4.63e-12 67.8
Msa0795930 MtrunA17_Chr3g0139441 24.898 245 150 7 19 257 41 257 9.18e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0795930 AT1G62620.1 61.504 452 163 5 10 454 3 450 0.0 580
Msa0795930 AT1G63370.1 61.283 452 164 5 10 454 3 450 0.0 580
Msa0795930 AT1G62600.1 62.281 456 161 6 4 453 1 451 0.0 571
Msa0795930 AT1G12200.1 60.526 456 169 6 5 453 1 452 0.0 546
Msa0795930 AT1G62560.1 55.408 453 196 3 5 455 1 449 0.0 528
Msa0795930 AT1G12140.1 58.499 453 181 3 5 455 1 448 0.0 528
Msa0795930 AT1G12140.3 58.499 453 181 3 5 455 1 448 0.0 528
Msa0795930 AT1G62580.2 60.044 453 174 6 4 453 1 449 0.0 525
Msa0795930 AT1G62620.2 64.508 386 130 4 10 388 3 388 0.0 521
Msa0795930 AT1G12140.2 58.057 453 181 4 5 455 1 446 0.0 519
Msa0795930 AT1G65860.1 54.846 454 197 5 4 455 1 448 0.0 515
Msa0795930 AT1G62600.2 64.706 391 131 5 4 388 1 390 1.02e-178 505
Msa0795930 AT1G62540.1 56.167 454 191 5 4 455 1 448 6.03e-178 506
Msa0795930 AT1G12160.1 53.289 456 193 4 15 454 10 461 7.49e-177 503
Msa0795930 AT1G62580.1 55.967 486 174 8 4 453 1 482 7.87e-177 504
Msa0795930 AT1G62570.1 55.947 454 192 5 4 455 1 448 5.57e-175 498
Msa0795930 AT1G62540.2 53.445 479 190 6 4 455 1 473 5.71e-174 497
Msa0795930 AT1G62560.2 59.067 386 156 2 5 388 1 386 5.28e-170 483
Msa0795930 AT1G12130.1 53.219 466 185 8 12 454 8 463 6.95e-166 476
Msa0795930 AT1G62540.3 53.304 454 186 7 4 455 1 430 1.25e-163 469
Msa0795930 AT1G63340.1 53.863 453 162 5 4 453 1 409 2.04e-162 465
Msa0795930 AT1G63370.2 63.363 333 115 4 10 335 3 335 2.27e-154 441
Msa0795930 AT5G61290.1 48.758 443 207 8 15 446 14 447 1.38e-149 434
Msa0795930 AT5G07800.1 47.137 454 218 10 15 454 14 459 3.59e-145 422
Msa0795930 AT1G12200.2 64.095 337 113 5 5 334 1 336 1.62e-143 416
Msa0795930 AT1G62580.3 61.449 345 117 5 4 333 1 344 2.74e-133 389
Msa0795930 AT1G63390.1 57.407 162 63 4 4 160 1 161 4.22e-48 163
Msa0795930 AT5G45180.1 23.810 441 214 18 13 363 9 417 3.63e-15 77.8
Msa0795930 AT1G19250.1 28.340 247 121 10 12 228 8 228 6.26e-14 74.3
Msa0795930 AT5G11320.2 23.214 224 136 5 19 240 19 208 3.13e-12 68.2
Msa0795930 AT5G11320.1 23.214 224 136 5 19 240 19 208 6.00e-12 67.8
Msa0795930 AT4G28720.1 24.473 237 137 7 18 241 26 233 4.73e-11 65.1

Find 153 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTGGCGTGAACAATTT+TGG 0.185892 5_3:+7934632 None:intergenic
TTTGCTGGGGTGGGTGAAGG+TGG 0.205048 5_3:-7934194 Msa0795930:CDS
CAATTTGCCTCGGGAGAGTA+TGG 0.242875 5_3:-7934366 Msa0795930:CDS
TAAGAGGCACACTCATAATA+TGG 0.255894 5_3:-7931967 Msa0795930:CDS
AAGAAAATAACCAGGAATAT+TGG 0.264046 5_3:+7934070 None:intergenic
CTCCATGGCTTTCCTTTGTT+GGG 0.291150 5_3:-7932142 Msa0795930:CDS
AAGACAGAGGTGGTGTTTGC+TGG 0.296073 5_3:-7934209 Msa0795930:CDS
ATATTATGAGTGTGCCTCTT+AGG 0.298315 5_3:+7931969 None:intergenic
TAACATGTGGCTTCATTCTA+TGG 0.307413 5_3:-7932752 Msa0795930:intron
TGCAGTGGGACTACAATAAC+TGG 0.310122 5_3:-7930877 Msa0795930:intron
GTGTTTGCTGGGGTGGGTGA+AGG 0.313072 5_3:-7934197 Msa0795930:CDS
CACGGGCTCGGCCAATGTTC+AGG 0.313423 5_3:-7931943 Msa0795930:intron
CATACTCTCCCGAGGCAAAT+TGG 0.320024 5_3:+7934367 None:intergenic
GGGTAGGTTGTAGTTCTAAT+AGG 0.325138 5_3:-7932889 Msa0795930:intron
GCTCGGGTGTTCTGTAATTA+TGG 0.325418 5_3:+7933220 None:intergenic
AGAAAATAACCAGGAATATT+GGG 0.332604 5_3:+7934071 None:intergenic
GCTCCATGGCTTTCCTTTGT+TGG 0.336615 5_3:-7932143 Msa0795930:CDS
GAATGTAAATTATATATGTT+TGG 0.343768 5_3:-7930585 Msa0795930:three_prime_UTR
CCGAGACTTCCCAATATTCC+TGG 0.353788 5_3:-7934080 Msa0795930:intron
AGTGGATAAGCTTCCGGTTC+GGG 0.354622 5_3:+7934414 None:intergenic
ATCATGTTCATTCATGTGAT+AGG 0.359899 5_3:+7934728 None:intergenic
GGGTGGGTGAAGGTGGGAAA+TGG 0.367744 5_3:-7934187 Msa0795930:CDS
GCCGATGACTGCCACGTGGC+GGG 0.373968 5_3:+7934574 None:intergenic
TGGCTATGCATTTGCTTCCC+TGG 0.375441 5_3:+7933240 None:intergenic
AGAGGTGGTGTTTGCTGGGG+TGG 0.381682 5_3:-7934204 Msa0795930:CDS
CTTTGTTGGGTTACCTTGGA+AGG 0.382913 5_3:-7932129 Msa0795930:CDS
ATGGAGAACGCAAATGTATA+TGG 0.387354 5_3:-7930819 Msa0795930:CDS
TGCTACTAAGCCTCCGGCGC+CGG 0.388838 5_3:+7934550 None:intergenic
AGAATCCGACCCACTCGGTT+TGG 0.394740 5_3:-7934438 Msa0795930:CDS
TGGTTCGGAGTGAATTGTAT+AGG 0.394896 5_3:+7934387 None:intergenic
TACTTGTCACTTGAAGAATC+TGG 0.396469 5_3:-7931996 Msa0795930:CDS
TACTTGATCTTGAAAGGGCT+CGG 0.401139 5_3:+7933203 None:intergenic
AGAAAGGGAGAGATTGTAGA+AGG 0.404469 5_3:-7934310 Msa0795930:CDS
CACTCGGTTTGGACCCGAAC+CGG 0.410482 5_3:-7934427 Msa0795930:CDS
CTTCGAGCGAGGAGAAGAAT+TGG 0.410605 5_3:-7934489 Msa0795930:CDS
GGCTCGAGTGGATAAGCTTC+CGG 0.414887 5_3:+7934408 None:intergenic
GAGGTGGTGTTTGCTGGGGT+GGG 0.423874 5_3:-7934203 Msa0795930:CDS
CTGCAGAGCAAGTGGATAGC+TGG 0.424635 5_3:-7932083 Msa0795930:CDS
GAGTGGATAAGCTTCCGGTT+CGG 0.425312 5_3:+7934413 None:intergenic
TTAATAAATGGAAGAATCAA+TGG 0.432279 5_3:+7934660 None:intergenic
GCAGTCATCGGCGCCGGCGC+CGG 0.432692 5_3:-7934563 Msa0795930:CDS
GAGAAGAATTGGGCGGTTCA+TGG 0.435788 5_3:-7934478 Msa0795930:CDS
TTCTTCTAAAAGGGTAATCT+CGG 0.436563 5_3:+7934339 None:intergenic
TCACCACACCATTGGTTTCA+AGG 0.437617 5_3:+7932222 None:intergenic
CACGTGGCAGTCATCGGCGC+CGG 0.444457 5_3:-7934569 Msa0795930:CDS
ATCACTTACTTGATCTTGAA+AGG 0.452689 5_3:+7933197 None:intergenic
TTTAGAAGAAAAGAAGAGAA+AGG 0.454059 5_3:-7934326 Msa0795930:CDS
TTGCTGGGGTGGGTGAAGGT+GGG 0.455177 5_3:-7934193 Msa0795930:CDS
TTCCACCGGCGTTAGCTCCA+TGG 0.457976 5_3:-7932157 Msa0795930:CDS
TGTGAGAAGTGGTGTTGCGG+TGG 0.462747 5_3:+7934598 None:intergenic
TCAGGCATTAATGCATGGCC+AGG 0.465216 5_3:-7933258 Msa0795930:intron
TTTCCTTTGTTGGGTTACCT+TGG 0.473219 5_3:-7932133 Msa0795930:CDS
TTAGAAGAAAAGAAGAGAAA+GGG 0.478877 5_3:-7934325 Msa0795930:CDS
TGCTCTGCAGTTCAAACAAA+GGG 0.480096 5_3:+7932096 None:intergenic
AGACAGAGGTGGTGTTTGCT+GGG 0.480683 5_3:-7934208 Msa0795930:CDS
GTTCTCCATTCTTCCATAGC+AGG 0.489761 5_3:+7930833 None:intergenic
GTCATCGGCGCCGGCGCCGG+AGG 0.490906 5_3:-7934560 Msa0795930:CDS
CACTCCGAACCAATTTGCCT+CGG 0.495195 5_3:-7934376 Msa0795930:CDS
CACTCGTCACGATAAGTCTC+AGG 0.501205 5_3:+7930770 None:intergenic
GTGGGCATGATGAATTTCAT+TGG 0.502202 5_3:+7934617 None:intergenic
GACTTCATTGTACATTGCAC+AGG 0.505864 5_3:-7932555 Msa0795930:CDS
TCATAATATGGGCACGGGCT+CGG 0.507929 5_3:-7931955 Msa0795930:CDS
TTTCCTTTCCTTGAAACCAA+TGG 0.508177 5_3:-7932230 Msa0795930:CDS
TCAGTGCGGTGTTCCTGCTA+TGG 0.508464 5_3:-7930846 Msa0795930:CDS
GCGTGCTGCTACTAAGCCTC+CGG 0.510739 5_3:+7934544 None:intergenic
ATATGGCTACATCTAAGAAC+AGG 0.511352 5_3:-7930802 Msa0795930:CDS
ACTTGATCTTGAAAGGGCTC+GGG 0.512775 5_3:+7933204 None:intergenic
AGAAGAATTGGGCGGTTCAT+GGG 0.513280 5_3:-7934477 Msa0795930:CDS
AGTGGGTCGGATTCTATCGC+TGG 0.516193 5_3:+7934446 None:intergenic
GTGAGAAGTGGTGTTGCGGT+GGG 0.518569 5_3:+7934599 None:intergenic
TCACTTACTTGATCTTGAAA+GGG 0.518929 5_3:+7933198 None:intergenic
TTGAGATTGGTGATTTGGTG+AGG 0.519792 5_3:-7934235 Msa0795930:CDS
TTCGAGCGAGGAGAAGAATT+GGG 0.519829 5_3:-7934488 Msa0795930:CDS
TCTCCCGAGGCAAATTGGTT+CGG 0.520142 5_3:+7934372 None:intergenic
AGCCACATGTTATCATGGCC+AGG 0.523909 5_3:+7932763 None:intergenic
CCCCGCCACGTGGCAGTCAT+CGG 0.524579 5_3:-7934575 Msa0795930:CDS
AATGAAGCCACATGTTATCA+TGG 0.526082 5_3:+7932758 None:intergenic
ACTCCGAACCAATTTGCCTC+GGG 0.526203 5_3:-7934375 Msa0795930:CDS
AAGAGGCACACTCATAATAT+GGG 0.527124 5_3:-7931966 Msa0795930:CDS
GGGAAAGGAGCAACCTTCCA+AGG 0.527136 5_3:+7932116 None:intergenic
TCATGTTCATTCATGTGATA+GGG 0.529036 5_3:+7934729 None:intergenic
ATCTACGGTCACCACACCAT+TGG 0.533574 5_3:+7932214 None:intergenic
TCTGTTGAAGAAGATAAGCT+TGG 0.538010 5_3:-7932793 Msa0795930:CDS
CATTGCCCTTCCTTCAGAAG+AGG 0.538791 5_3:-7932045 Msa0795930:CDS
GGAGATGACTAAAGATATTG+AGG 0.539150 5_3:-7932024 Msa0795930:CDS
TGTAGAAGGTTCCCGAGTCA+TGG 0.539602 5_3:-7934296 Msa0795930:CDS
ATTGACAGTGTTCATGAAGA+TGG 0.540078 5_3:-7932615 Msa0795930:CDS
ACACCATTGGTTTCAAGGAA+AGG 0.541856 5_3:+7932227 None:intergenic
GAGATCTAGATCGGTGGAGA+GGG 0.542522 5_3:-7934159 Msa0795930:CDS
AAGAATCTGGCATTCCTAAG+AGG 0.544319 5_3:-7931983 Msa0795930:CDS
TCATCTCCTCTTCTGAAGGA+AGG 0.544426 5_3:+7932039 None:intergenic
CATCTCCTCTTCTGAAGGAA+GGG 0.547731 5_3:+7932040 None:intergenic
GGGTGTGAGAAGTGGTGTTG+CGG 0.549595 5_3:+7934595 None:intergenic
CCAGGAATATTGGGAAGTCT+CGG 0.551573 5_3:+7934080 None:intergenic
TTAGTCATCTCCTCTTCTGA+AGG 0.554548 5_3:+7932035 None:intergenic
GGGTGAAGGTGGGAAATGGA+CGG 0.554732 5_3:-7934183 Msa0795930:CDS
ATCAAAACCTCTCCATGACT+CGG 0.555813 5_3:+7934284 None:intergenic
TGTTTGAACTGCAGAGCAAG+TGG 0.561360 5_3:-7932091 Msa0795930:CDS
GAATCGTAATCGTAAGCCAC+AGG 0.564603 5_3:+7934687 None:intergenic
GCACGCGAGCTCCGACGAGA+AGG 0.564731 5_3:-7934527 Msa0795930:CDS
GCGATAGAATCCGACCCACT+CGG 0.565622 5_3:-7934443 Msa0795930:CDS
AATATGAACTTCTTTAGCAA+CGG 0.565855 5_3:+7932825 None:intergenic
TGCAGTTCAAACAAAGGGAA+AGG 0.568166 5_3:+7932101 None:intergenic
GATGCTGTTGTTGTTTGCAA+TGG 0.576128 5_3:-7934116 Msa0795930:CDS
GTTAAGAATAACACTGAACT+AGG 0.576377 5_3:+7930638 None:intergenic
CGCCGATGACTGCCACGTGG+CGG 0.576460 5_3:+7934573 None:intergenic
GTGTTCCTGCTATGGAAGAA+TGG 0.577997 5_3:-7930838 Msa0795930:CDS
ATATAAAGGCACCTGAACAT+TGG 0.580551 5_3:+7931932 None:intergenic
GATAAGCTTGGAAAGTTACC+TGG 0.583301 5_3:-7932781 Msa0795930:CDS
TTGCTCTGCAGTTCAAACAA+AGG 0.584189 5_3:+7932095 None:intergenic
CACACTCATAATATGGGCAC+GGG 0.585534 5_3:-7931960 Msa0795930:CDS
ACCGTAGATGACAATCGTGT+TGG 0.587555 5_3:-7932200 Msa0795930:CDS
GACAGAGGTGGTGTTTGCTG+GGG 0.588809 5_3:-7934207 Msa0795930:CDS
CCGATGACTGCCACGTGGCG+GGG 0.590887 5_3:+7934575 None:intergenic
TCGAGAAATATCAACCGCAC+TGG 0.594589 5_3:+7932858 None:intergenic
TGAGATCTAGATCGGTGGAG+AGG 0.598722 5_3:-7934160 Msa0795930:CDS
TCCAACACGATTGTCATCTA+CGG 0.599218 5_3:+7932199 None:intergenic
CTACTTGATGTCCTTCTCGT+CGG 0.601788 5_3:+7934516 None:intergenic
TAGGTTGTAGTTCTAATAGG+TGG 0.603871 5_3:-7932886 Msa0795930:CDS
CGGGTCCAAACCGAGTGGGT+CGG 0.604890 5_3:+7934433 None:intergenic
TACTGTAATCATAATTCCTG+TGG 0.606303 5_3:-7934703 Msa0795930:five_prime_UTR
CGGCGCCGATGACTGCCACG+TGG 0.606541 5_3:+7934570 None:intergenic
AACCCAACAAAGGAAAGCCA+TGG 0.607422 5_3:+7932140 None:intergenic
GCACACTCATAATATGGGCA+CGG 0.608045 5_3:-7931961 Msa0795930:CDS
ACGTGGCGGGGTGTGAGAAG+TGG 0.608557 5_3:+7934587 None:intergenic
TCAAAACCTCTCCATGACTC+GGG 0.609566 5_3:+7934285 None:intergenic
GTGAATTGTATAGGCTCGAG+TGG 0.612633 5_3:+7934396 None:intergenic
AATTTGCCTCGGGAGAGTAT+GGG 0.615300 5_3:-7934365 Msa0795930:CDS
ATGGACGGTGAGATCTAGAT+CGG 0.619336 5_3:-7934168 Msa0795930:CDS
GACGGTGAGATCTAGATCGG+TGG 0.626733 5_3:-7934165 Msa0795930:CDS
GGTTCGGGTCCAAACCGAGT+GGG 0.626979 5_3:+7934429 None:intergenic
AGCCATGGAGCTAACGCCGG+TGG 0.629282 5_3:+7932155 None:intergenic
CAGGCATTAATGCATGGCCA+GGG 0.629289 5_3:-7933257 Msa0795930:CDS
ATCGGTGGAGAGGGAATGTG+TGG 0.636731 5_3:-7934150 Msa0795930:CDS
AAGGTTCCCGAGTCATGGAG+AGG 0.638374 5_3:-7934291 Msa0795930:CDS
GGTTGATATTTCTCGAGACG+TGG 0.639339 5_3:-7932851 Msa0795930:CDS
CTGAGACTTATCGTGACGAG+TGG 0.640097 5_3:-7930769 Msa0795930:CDS
TTTCCTTGAAACCAATGGTG+TGG 0.641481 5_3:-7932225 Msa0795930:CDS
CGGTTCGGGTCCAAACCGAG+TGG 0.649786 5_3:+7934428 None:intergenic
TTTGGTGAGGTTGAAGACAG+AGG 0.656329 5_3:-7934222 Msa0795930:CDS
GAGCGAGGAGAAGAATTGGG+CGG 0.661680 5_3:-7934485 Msa0795930:CDS
CAAGTAGTAGTCTTCGAGCG+AGG 0.661706 5_3:-7934500 Msa0795930:CDS
TGAGACTTATCGTGACGAGT+GGG 0.661820 5_3:-7930768 Msa0795930:CDS
TACCTGGCCATGATAACATG+TGG 0.663783 5_3:-7932765 Msa0795930:CDS
CGGAAACCCATACTCTCCCG+AGG 0.666291 5_3:+7934359 None:intergenic
CTTCCAAGGTAACCCAACAA+AGG 0.675077 5_3:+7932130 None:intergenic
GAAAGCCATGGAGCTAACGC+CGG 0.676417 5_3:+7932152 None:intergenic
TGTTCATGAAGATGGTACAG+TGG 0.683307 5_3:-7932607 Msa0795930:CDS
ACTTCATTGTACATTGCACA+GGG 0.687673 5_3:-7932554 Msa0795930:intron
ACTTCTCACACCCCGCCACG+TGG 0.689666 5_3:-7934585 Msa0795930:CDS
GGTGAGGTTGAAGACAGAGG+TGG 0.690231 5_3:-7934219 Msa0795930:CDS
AATAGGTGGTGCTGCCAGTG+CGG 0.737644 5_3:-7932872 Msa0795930:CDS
AACTGGATTGCTGATCAGTG+CGG 0.766461 5_3:-7930860 Msa0795930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTTTTTATTTTTTTCAAT+TGG - chr5_3:7931385-7931404 Msa0795930:intron 10.0%
!!! TTTTTTTTTTAATGAATAAG+TGG + chr5_3:7931574-7931593 None:intergenic 10.0%
!! ACTTATTCATTAAAAAAAAA+AGG - chr5_3:7931573-7931592 Msa0795930:intron 10.0%
!! ATGAATAATCAAATAAAAAT+TGG + chr5_3:7931687-7931706 None:intergenic 10.0%
!! AAATAGCAATAAATAATTTA+AGG + chr5_3:7931808-7931827 None:intergenic 10.0%
!! TTTGATATAACAAAATATAA+AGG + chr5_3:7933370-7933389 None:intergenic 10.0%
!!! AATTATTTTAATGAGAAAGA+GGG + chr5_3:7930528-7930547 None:intergenic 15.0%
!!! AAATTATTTTAATGAGAAAG+AGG + chr5_3:7930529-7930548 None:intergenic 15.0%
!! ATTGTACTTATTATTGTTAT+AGG - chr5_3:7931896-7931915 Msa0795930:intron 15.0%
!! GTTTAAAAGAAAAACTAATA+GGG + chr5_3:7932770-7932789 None:intergenic 15.0%
!! GAATGTAAATTATATATGTT+TGG - chr5_3:7934700-7934719 Msa0795930:five_prime_UTR 15.0%
!! TTAATAAATGGAAGAATCAA+TGG + chr5_3:7930628-7930647 None:intergenic 20.0%
!!! ATTTTGGTGTTGTTAATAAA+TGG + chr5_3:7930640-7930659 None:intergenic 20.0%
!!! ATGTCTCTTTCTTATTTATA+TGG - chr5_3:7931241-7931260 Msa0795930:intron 20.0%
!! ATTAGAAAACAGAATATAAG+AGG + chr5_3:7931313-7931332 None:intergenic 20.0%
!!! ATTTAGTTTAAAGACTAACA+AGG + chr5_3:7931421-7931440 None:intergenic 20.0%
!! CAAAATTCAACTTAACAATT+CGG - chr5_3:7931994-7932013 Msa0795930:CDS 20.0%
!! TAACTAAAAAAGAATCCTAA+TGG + chr5_3:7932139-7932158 None:intergenic 20.0%
!! GGTTTAAAAGAAAAACTAAT+AGG + chr5_3:7932771-7932790 None:intergenic 20.0%
!! AATAGTTAACTATCCTTTAA+TGG - chr5_3:7934356-7934375 Msa0795930:CDS 20.0%
!!! TCTCTTCTTTTCTTCTAAAA+GGG + chr5_3:7930958-7930977 None:intergenic 25.0%
!! TTCTCTTCTTTTCTTCTAAA+AGG + chr5_3:7930959-7930978 None:intergenic 25.0%
! TTTAGAAGAAAAGAAGAGAA+AGG - chr5_3:7930959-7930978 Msa0795930:intron 25.0%
! TTAGAAGAAAAGAAGAGAAA+GGG - chr5_3:7930960-7930979 Msa0795930:intron 25.0%
! AGAAAATAACCAGGAATATT+GGG + chr5_3:7931217-7931236 None:intergenic 25.0%
! AAGAAAATAACCAGGAATAT+TGG + chr5_3:7931218-7931237 None:intergenic 25.0%
! GAAATGAAATTGAAAAAGCT+TGG + chr5_3:7931336-7931355 None:intergenic 25.0%
!!! TTTTTTCAATTGGAATGACA+TGG - chr5_3:7931395-7931414 Msa0795930:intron 25.0%
! GATATGTATTGTTATAAGCA+GGG - chr5_3:7931526-7931545 Msa0795930:intron 25.0%
! ATATGTATTGTTATAAGCAG+GGG - chr5_3:7931527-7931546 Msa0795930:intron 25.0%
!!! TTTTTTGTCAAGTAATCTGA+TGG + chr5_3:7931609-7931628 None:intergenic 25.0%
! TTACCTTTCAACAAAAATGT+TGG - chr5_3:7931653-7931672 Msa0795930:intron 25.0%
!!! ATATTGATTCTAGTTCCATT+AGG - chr5_3:7932121-7932140 Msa0795930:CDS 25.0%
! ACAAATTCAAATAGCTCATT+TGG - chr5_3:7932186-7932205 Msa0795930:CDS 25.0%
!!! TTCTATCCATTTTTTGTGTT+GGG - chr5_3:7932376-7932395 Msa0795930:intron 25.0%
! AATATGAACTTCTTTAGCAA+CGG + chr5_3:7932463-7932482 None:intergenic 25.0%
!!! ATGGTAAAACTTGTTATCTA+TGG - chr5_3:7932552-7932571 Msa0795930:intron 25.0%
! ATTAGTAACCATAAACTGTT+TGG - chr5_3:7932599-7932618 Msa0795930:CDS 25.0%
!! TTTTAAACCAGTTTATGTTG+TGG - chr5_3:7932782-7932801 Msa0795930:CDS 25.0%
!!! TAAGTTTTAAATCGCAAATG+CGG - chr5_3:7932808-7932827 Msa0795930:CDS 25.0%
! TTGAGGACTCAAATATATTT+AGG - chr5_3:7932927-7932946 Msa0795930:intron 25.0%
!!! TTTTATTAGGTTGTTTCTTC+TGG - chr5_3:7933393-7933412 Msa0795930:intron 25.0%
!!! TTTATTAGGTTGTTTCTTCT+GGG - chr5_3:7933394-7933413 Msa0795930:intron 25.0%
! GAACTGTTGGATTTAATTAA+CGG + chr5_3:7934103-7934122 None:intergenic 25.0%
! CACTATAATACAAGAAGAAA+CGG + chr5_3:7934180-7934199 None:intergenic 25.0%
! ATTCTTAATTGTTCAGACTT+AGG - chr5_3:7934216-7934235 Msa0795930:CDS 25.0%
TCATGTTCATTCATGTGATA+GGG + chr5_3:7930559-7930578 None:intergenic 30.0%
ATCATGTTCATTCATGTGAT+AGG + chr5_3:7930560-7930579 None:intergenic 30.0%
TACTGTAATCATAATTCCTG+TGG - chr5_3:7930582-7930601 Msa0795930:three_prime_UTR 30.0%
! TTCTTCTAAAAGGGTAATCT+CGG + chr5_3:7930949-7930968 None:intergenic 30.0%
!! AGAGGTTTTGATGTATTTGA+AGG - chr5_3:7931012-7931031 Msa0795930:intron 30.0%
!!! TTTGCTGAAGATTTTGAGAT+TGG - chr5_3:7931037-7931056 Msa0795930:intron 30.0%
!!! AGATTTTGAGATTGGTGATT+TGG - chr5_3:7931045-7931064 Msa0795930:intron 30.0%
GGATATGTATTGTTATAAGC+AGG - chr5_3:7931525-7931544 Msa0795930:intron 30.0%
! TGACCAACATTTTTGTTGAA+AGG + chr5_3:7931659-7931678 None:intergenic 30.0%
TCACTTACTTGATCTTGAAA+GGG + chr5_3:7932090-7932109 None:intergenic 30.0%
ATCACTTACTTGATCTTGAA+AGG + chr5_3:7932091-7932110 None:intergenic 30.0%
TCAAGATCAAGTAAGTGATA+TGG - chr5_3:7932092-7932111 Msa0795930:CDS 30.0%
AGCATATGTAATATGTTCGA+TGG + chr5_3:7932318-7932337 None:intergenic 30.0%
!!! CTTCTATCCATTTTTTGTGT+TGG - chr5_3:7932375-7932394 Msa0795930:intron 30.0%
TATCTATGGTGAGAATTAGA+TGG - chr5_3:7932566-7932585 Msa0795930:CDS 30.0%
TATGGTTACTAATGTCATGA+TGG + chr5_3:7932592-7932611 None:intergenic 30.0%
ACAGTTATCCAAACAGTTTA+TGG + chr5_3:7932610-7932629 None:intergenic 30.0%
!! CTGCAATATAAATGTTTTGG+AGG - chr5_3:7932831-7932850 Msa0795930:CDS 30.0%
GTTGCTATAACATTGCAATT+TGG + chr5_3:7932878-7932897 None:intergenic 30.0%
! TGCAATTTAAAACCATGTTG+AGG - chr5_3:7932910-7932929 Msa0795930:intron 30.0%
ATATATTTGAGTCCTCAACA+TGG + chr5_3:7932925-7932944 None:intergenic 30.0%
ATCATACTTGTACCTAGAAA+AGG + chr5_3:7933035-7933054 None:intergenic 30.0%
TCCATTATTAGCTGGTAATT+CGG - chr5_3:7933695-7933714 Msa0795930:intron 30.0%
AGAATACTCCATGATATAGA+CGG - chr5_3:7933777-7933796 Msa0795930:intron 30.0%
AAGGATTGAATGGAAATCAA+TGG - chr5_3:7933921-7933940 Msa0795930:intron 30.0%
TGAATGGAAATCAATGGAAA+AGG - chr5_3:7933927-7933946 Msa0795930:intron 30.0%
AAAAAATTGACTAGATCGCA+TGG - chr5_3:7934003-7934022 Msa0795930:intron 30.0%
AAGGTTTAATTACCTGTGTT+TGG - chr5_3:7934042-7934061 Msa0795930:intron 30.0%
AGGTTTAATTACCTGTGTTT+GGG - chr5_3:7934043-7934062 Msa0795930:intron 30.0%
GTCAAATTAACATGAACTGT+TGG + chr5_3:7934116-7934135 None:intergenic 30.0%
CGTTTCTTCTTGTATTATAG+TGG - chr5_3:7934178-7934197 Msa0795930:CDS 30.0%
!! TTGCATTTGACTTCATTTTG+TGG + chr5_3:7934252-7934271 None:intergenic 30.0%
TATACAGAGCTAAAATATCC+TGG - chr5_3:7934273-7934292 Msa0795930:CDS 30.0%
AGAACATGGTTAAAAAAACC+AGG + chr5_3:7934294-7934313 None:intergenic 30.0%
TAACCATGTTCTGTTTCAAA+AGG - chr5_3:7934302-7934321 Msa0795930:CDS 30.0%
AACATATCAGGTTCCATTAA+AGG + chr5_3:7934372-7934391 None:intergenic 30.0%
TAATGGAACCTGATATGTTA+AGG - chr5_3:7934373-7934392 Msa0795930:CDS 30.0%
TACACATTCCTTAACATATC+AGG + chr5_3:7934384-7934403 None:intergenic 30.0%
GTTAAGAATAACACTGAACT+AGG + chr5_3:7934650-7934669 None:intergenic 30.0%
! TTCATTGGCGTGAACAATTT+TGG + chr5_3:7930656-7930675 None:intergenic 35.0%
GACATGAGAAGAAAATAACC+AGG + chr5_3:7931226-7931245 None:intergenic 35.0%
ACTTTATGAATGTGCTAGAG+TGG + chr5_3:7931268-7931287 None:intergenic 35.0%
TAATGAATAAGTGGTGTGTC+CGG + chr5_3:7931565-7931584 None:intergenic 35.0%
! CAATTCGGATAACCTTTTTC+AGG - chr5_3:7932009-7932028 Msa0795930:CDS 35.0%
CATGCATTAATGCCTGAAAA+AGG + chr5_3:7932024-7932043 None:intergenic 35.0%
!!! CTTTTTCAGGCATTAATGCA+TGG - chr5_3:7932022-7932041 Msa0795930:CDS 35.0%
!!! ATCCATTTTTTGTGTTGGGT+AGG - chr5_3:7932380-7932399 Msa0795930:intron 35.0%
AACCTACCCAACACAAAAAA+TGG + chr5_3:7932385-7932404 None:intergenic 35.0%
!! TAGGTTGTAGTTCTAATAGG+TGG - chr5_3:7932399-7932418 Msa0795930:intron 35.0%
TCTGTTGAAGAAGATAAGCT+TGG - chr5_3:7932492-7932511 Msa0795930:intron 35.0%
AATGAAGCCACATGTTATCA+TGG + chr5_3:7932530-7932549 None:intergenic 35.0%
TAACATGTGGCTTCATTCTA+TGG - chr5_3:7932533-7932552 Msa0795930:intron 35.0%
ATTGACAGTGTTCATGAAGA+TGG - chr5_3:7932670-7932689 Msa0795930:intron 35.0%
ACTTCATTGTACATTGCACA+GGG - chr5_3:7932731-7932750 Msa0795930:intron 35.0%
CTTAAGTCCACAACATAAAC+TGG + chr5_3:7932792-7932811 None:intergenic 35.0%
! CGGCTGCAATATAAATGTTT+TGG - chr5_3:7932828-7932847 Msa0795930:CDS 35.0%
CATTGCAATTTGGACATTGT+CGG + chr5_3:7932868-7932887 None:intergenic 35.0%
TTGCAATGTTATAGCAACGA+CGG - chr5_3:7932880-7932899 Msa0795930:CDS 35.0%
AGACTTTATGTCTCAATTGC+AGG + chr5_3:7932962-7932981 None:intergenic 35.0%
! TGTCCATTTGTTCCTTTTCT+AGG - chr5_3:7933020-7933039 Msa0795930:intron 35.0%
GTACCTAGAAAAGGAACAAA+TGG + chr5_3:7933026-7933045 None:intergenic 35.0%
TTTCCTTTCCTTGAAACCAA+TGG - chr5_3:7933055-7933074 Msa0795930:intron 35.0%
GGAGATGACTAAAGATATTG+AGG - chr5_3:7933261-7933280 Msa0795930:intron 35.0%
! TACTTGTCACTTGAAGAATC+TGG - chr5_3:7933289-7933308 Msa0795930:intron 35.0%
ATATTATGAGTGTGCCTCTT+AGG + chr5_3:7933319-7933338 None:intergenic 35.0%
! TAAGAGGCACACTCATAATA+TGG - chr5_3:7933318-7933337 Msa0795930:intron 35.0%
! AAGAGGCACACTCATAATAT+GGG - chr5_3:7933319-7933338 Msa0795930:intron 35.0%
!! ATATAAAGGCACCTGAACAT+TGG + chr5_3:7933356-7933375 None:intergenic 35.0%
! TCAGGAGGTTGTTGATAAAA+CGG + chr5_3:7933635-7933654 None:intergenic 35.0%
ATGGAGGTTAACAGATCTAT+GGG + chr5_3:7933680-7933699 None:intergenic 35.0%
AATGGAGGTTAACAGATCTA+TGG + chr5_3:7933681-7933700 None:intergenic 35.0%
TGTTAACCTCCATTATTAGC+TGG - chr5_3:7933687-7933706 Msa0795930:intron 35.0%
GAATTACCAGCTAATAATGG+AGG + chr5_3:7933696-7933715 None:intergenic 35.0%
ATTATTAGCTGGTAATTCGG+CGG - chr5_3:7933698-7933717 Msa0795930:intron 35.0%
! GGTTTCCAATGTTTGAAATC+CGG - chr5_3:7933722-7933741 Msa0795930:intron 35.0%
GTAAGTTTCCGATGAATTGT+CGG - chr5_3:7933819-7933838 Msa0795930:intron 35.0%
CGGTGGAGTAAAAATTATCT+TGG - chr5_3:7933881-7933900 Msa0795930:intron 35.0%
TCACTGAGATAAGGATTGAA+TGG - chr5_3:7933911-7933930 Msa0795930:intron 35.0%
ATGGAAAAGGACACAAGAAA+TGG - chr5_3:7933940-7933959 Msa0795930:intron 35.0%
AGGACACAAGAAATGGATAT+AGG - chr5_3:7933947-7933966 Msa0795930:intron 35.0%
TTGACTGAATTTCGAAACTC+TGG - chr5_3:7933980-7933999 Msa0795930:intron 35.0%
TTTACTCTAAACCCAAACAC+AGG + chr5_3:7934057-7934076 None:intergenic 35.0%
!!! ATGCCTTTTGAAACAGAACA+TGG + chr5_3:7934308-7934327 None:intergenic 35.0%
ATGGAGAACGCAAATGTATA+TGG - chr5_3:7934466-7934485 Msa0795930:CDS 35.0%
ATATGGCTACATCTAAGAAC+AGG - chr5_3:7934483-7934502 Msa0795930:CDS 35.0%
GTGGGCATGATGAATTTCAT+TGG + chr5_3:7930671-7930690 None:intergenic 40.0%
! TGGTTCGGAGTGAATTGTAT+AGG + chr5_3:7930901-7930920 None:intergenic 40.0%
AGAAAGGGAGAGATTGTAGA+AGG - chr5_3:7930975-7930994 Msa0795930:intron 40.0%
ATCAAAACCTCTCCATGACT+CGG + chr5_3:7931004-7931023 None:intergenic 40.0%
!! TTGAGATTGGTGATTTGGTG+AGG - chr5_3:7931050-7931069 Msa0795930:intron 40.0%
!! GATGCTGTTGTTGTTTGCAA+TGG - chr5_3:7931169-7931188 Msa0795930:intron 40.0%
TGTATTGTTATAAGCAGGGG+CGG - chr5_3:7931530-7931549 Msa0795930:intron 40.0%
AATGAATAAGTGGTGTGTCC+GGG + chr5_3:7931564-7931583 None:intergenic 40.0%
TACTTGATCTTGAAAGGGCT+CGG + chr5_3:7932085-7932104 None:intergenic 40.0%
!!! TAGCTCATTTGGTTTTGCGT+TGG - chr5_3:7932197-7932216 Msa0795930:CDS 40.0%
!! GGGTAGGTTGTAGTTCTAAT+AGG - chr5_3:7932396-7932415 Msa0795930:intron 40.0%
GATAAGCTTGGAAAGTTACC+TGG - chr5_3:7932504-7932523 Msa0795930:intron 40.0%
TGTTCATGAAGATGGTACAG+TGG - chr5_3:7932678-7932697 Msa0795930:intron 40.0%
! GGTACAGTGGTTTTCAAAGA+TGG - chr5_3:7932691-7932710 Msa0795930:intron 40.0%
GACTTCATTGTACATTGCAC+AGG - chr5_3:7932730-7932749 Msa0795930:intron 40.0%
TTGGACATTGTCGGTAAATG+TGG + chr5_3:7932859-7932878 None:intergenic 40.0%
TGCAATGTTATAGCAACGAC+GGG - chr5_3:7932881-7932900 Msa0795930:CDS 40.0%
!! ACACCATTGGTTTCAAGGAA+AGG + chr5_3:7933061-7933080 None:intergenic 40.0%
TTTCCTTGAAACCAATGGTG+TGG - chr5_3:7933060-7933079 Msa0795930:intron 40.0%
TCCAACACGATTGTCATCTA+CGG + chr5_3:7933089-7933108 None:intergenic 40.0%
GGAAAAACATGCTTGTAGAG+CGG + chr5_3:7933112-7933131 None:intergenic 40.0%
! CTACAAGCATGTTTTTCCAC+CGG - chr5_3:7933114-7933133 Msa0795930:intron 40.0%
TTTCCTTTGTTGGGTTACCT+TGG - chr5_3:7933152-7933171 Msa0795930:intron 40.0%
TGCAGTTCAAACAAAGGGAA+AGG + chr5_3:7933187-7933206 None:intergenic 40.0%
TGCTCTGCAGTTCAAACAAA+GGG + chr5_3:7933192-7933211 None:intergenic 40.0%
TTGCTCTGCAGTTCAAACAA+AGG + chr5_3:7933193-7933212 None:intergenic 40.0%
TTAGTCATCTCCTCTTCTGA+AGG + chr5_3:7933253-7933272 None:intergenic 40.0%
AAGAATCTGGCATTCCTAAG+AGG - chr5_3:7933302-7933321 Msa0795930:intron 40.0%
CAGTTGTTCGATGCATCTAA+TGG - chr5_3:7933470-7933489 Msa0795930:intron 40.0%
TGGAGGTTAACAGATCTATG+GGG + chr5_3:7933679-7933698 None:intergenic 40.0%
GCCGAATTACCAGCTAATAA+TGG + chr5_3:7933699-7933718 None:intergenic 40.0%
CTCTACCGGATTTCAAACAT+TGG + chr5_3:7933730-7933749 None:intergenic 40.0%
! ATGTTTGAAATCCGGTAGAG+TGG - chr5_3:7933730-7933749 Msa0795930:intron 40.0%
TTGCAGAACCGTCTATATCA+TGG + chr5_3:7933788-7933807 None:intergenic 40.0%
AGACGGTTCTGCAATTATCT+CGG - chr5_3:7933794-7933813 Msa0795930:intron 40.0%
TTACTCCACCGACAATTCAT+CGG + chr5_3:7933830-7933849 None:intergenic 40.0%
ACCGACAATTCATTGTTCGA+CGG + chr5_3:7933865-7933884 None:intergenic 40.0%
GGTTGTGATTCACTGAGATA+AGG - chr5_3:7933902-7933921 Msa0795930:intron 40.0%
TAGATCGCATGGAAGAAGAA+GGG - chr5_3:7934014-7934033 Msa0795930:intron 40.0%
AGGAATGTGTATTCTTGCAG+TGG - chr5_3:7934393-7934412 Msa0795930:CDS 40.0%
GGAATGTGTATTCTTGCAGT+GGG - chr5_3:7934394-7934413 Msa0795930:CDS 40.0%
GAATCGTAATCGTAAGCCAC+AGG + chr5_3:7930601-7930620 None:intergenic 45.0%
CTACTTGATGTCCTTCTCGT+CGG + chr5_3:7930772-7930791 None:intergenic 45.0%
TTCGAGCGAGGAGAAGAATT+GGG - chr5_3:7930797-7930816 Msa0795930:CDS 45.0%
AGAAGAATTGGGCGGTTCAT+GGG - chr5_3:7930808-7930827 Msa0795930:CDS 45.0%
GTGAATTGTATAGGCTCGAG+TGG + chr5_3:7930892-7930911 None:intergenic 45.0%
! AATTTGCCTCGGGAGAGTAT+GGG - chr5_3:7930920-7930939 Msa0795930:intron 45.0%
TCAAAACCTCTCCATGACTC+GGG + chr5_3:7931003-7931022 None:intergenic 45.0%
TTTGGTGAGGTTGAAGACAG+AGG - chr5_3:7931063-7931082 Msa0795930:intron 45.0%
ATGGACGGTGAGATCTAGAT+CGG - chr5_3:7931117-7931136 Msa0795930:intron 45.0%
CCAGGAATATTGGGAAGTCT+CGG + chr5_3:7931208-7931227 None:intergenic 45.0%
TCCTATGAGCATAGCTCAGT+TGG - chr5_3:7931499-7931518 Msa0795930:intron 45.0%
GTATTGTTATAAGCAGGGGC+GGG - chr5_3:7931531-7931550 Msa0795930:intron 45.0%
TATTGTTATAAGCAGGGGCG+GGG - chr5_3:7931532-7931551 Msa0795930:intron 45.0%
GCTCGGGTGTTCTGTAATTA+TGG + chr5_3:7932068-7932087 None:intergenic 45.0%
ACTTGATCTTGAAAGGGCTC+GGG + chr5_3:7932084-7932103 None:intergenic 45.0%
ATGGTGCGTTACATTGGACA+CGG + chr5_3:7932299-7932318 None:intergenic 45.0%
TGTTCGATGGTGCGTTACAT+TGG + chr5_3:7932305-7932324 None:intergenic 45.0%
TCGAGAAATATCAACCGCAC+TGG + chr5_3:7932430-7932449 None:intergenic 45.0%
! GGTTGATATTTCTCGAGACG+TGG - chr5_3:7932434-7932453 Msa0795930:intron 45.0%
TACCTGGCCATGATAACATG+TGG - chr5_3:7932520-7932539 Msa0795930:intron 45.0%
!! TCACCACACCATTGGTTTCA+AGG + chr5_3:7933066-7933085 None:intergenic 45.0%
ACCGTAGATGACAATCGTGT+TGG - chr5_3:7933085-7933104 Msa0795930:intron 45.0%
CTCCATGGCTTTCCTTTGTT+GGG - chr5_3:7933143-7933162 Msa0795930:intron 45.0%
AACCCAACAAAGGAAAGCCA+TGG + chr5_3:7933148-7933167 None:intergenic 45.0%
CTTCCAAGGTAACCCAACAA+AGG + chr5_3:7933158-7933177 None:intergenic 45.0%
CTTTGTTGGGTTACCTTGGA+AGG - chr5_3:7933156-7933175 Msa0795930:intron 45.0%
TGTTTGAACTGCAGAGCAAG+TGG - chr5_3:7933194-7933213 Msa0795930:intron 45.0%
! CATCTCCTCTTCTGAAGGAA+GGG + chr5_3:7933248-7933267 None:intergenic 45.0%
! TCATCTCCTCTTCTGAAGGA+AGG + chr5_3:7933249-7933268 None:intergenic 45.0%
GCACACTCATAATATGGGCA+CGG - chr5_3:7933324-7933343 Msa0795930:intron 45.0%
CACACTCATAATATGGGCAC+GGG - chr5_3:7933325-7933344 Msa0795930:intron 45.0%
GAGAAGAAAGGGGAATTGAC+GGG + chr5_3:7933548-7933567 None:intergenic 45.0%
GGAGAAGAAAGGGGAATTGA+CGG + chr5_3:7933549-7933568 None:intergenic 45.0%
TAGGAAAACGCATCCGACAA+CGG + chr5_3:7933595-7933614 None:intergenic 45.0%
! GGAGGTTGTTGATAAAACGG+CGG + chr5_3:7933632-7933651 None:intergenic 45.0%
TCAAGTTACAGCCACTCTAC+CGG + chr5_3:7933744-7933763 None:intergenic 45.0%
AGTTTCCGATGAATTGTCGG+TGG - chr5_3:7933822-7933841 Msa0795930:intron 45.0%
GACAATTCATTGTTCGACGG+CGG + chr5_3:7933862-7933881 None:intergenic 45.0%
GCCGTCGAACAATGAATTGT+CGG - chr5_3:7933861-7933880 Msa0795930:intron 45.0%
GTCGAACAATGAATTGTCGG+TGG - chr5_3:7933864-7933883 Msa0795930:intron 45.0%
CTAGATCGCATGGAAGAAGA+AGG - chr5_3:7934013-7934032 Msa0795930:intron 45.0%
TGCTTGACAGCAGTGAATCA+CGG - chr5_3:7934153-7934172 Msa0795930:CDS 45.0%
TGCAGTGGGACTACAATAAC+TGG - chr5_3:7934408-7934427 Msa0795930:CDS 45.0%
AACTGGATTGCTGATCAGTG+CGG - chr5_3:7934425-7934444 Msa0795930:CDS 45.0%
GTGTTCCTGCTATGGAAGAA+TGG - chr5_3:7934447-7934466 Msa0795930:CDS 45.0%
GTTCTCCATTCTTCCATAGC+AGG + chr5_3:7934455-7934474 None:intergenic 45.0%
TGAGACTTATCGTGACGAGT+GGG - chr5_3:7934517-7934536 Msa0795930:CDS 45.0%
!! AAAAAAAGTAATAAAAAATA+GGG + chr5_3:7930501-7930520 None:intergenic 5.0%
!! TAAAAAAAGTAATAAAAAAT+AGG + chr5_3:7930502-7930521 None:intergenic 5.0%
!!! AGAAATAATTTTTTTAAAAA+AGG - chr5_3:7931944-7931963 Msa0795930:CDS 5.0%
!!! TTATATCAAATTTTTTTATT+AGG - chr5_3:7933380-7933399 Msa0795930:intron 5.0%
CAAGTAGTAGTCTTCGAGCG+AGG - chr5_3:7930785-7930804 Msa0795930:CDS 50.0%
CTTCGAGCGAGGAGAAGAAT+TGG - chr5_3:7930796-7930815 Msa0795930:CDS 50.0%
GAGAAGAATTGGGCGGTTCA+TGG - chr5_3:7930807-7930826 Msa0795930:CDS 50.0%
AGTGGATAAGCTTCCGGTTC+GGG + chr5_3:7930874-7930893 None:intergenic 50.0%
GAGTGGATAAGCTTCCGGTT+CGG + chr5_3:7930875-7930894 None:intergenic 50.0%
CACTCCGAACCAATTTGCCT+CGG - chr5_3:7930909-7930928 Msa0795930:intron 50.0%
ACTCCGAACCAATTTGCCTC+GGG - chr5_3:7930910-7930929 Msa0795930:intron 50.0%
TCTCCCGAGGCAAATTGGTT+CGG + chr5_3:7930916-7930935 None:intergenic 50.0%
CATACTCTCCCGAGGCAAAT+TGG + chr5_3:7930921-7930940 None:intergenic 50.0%
CAATTTGCCTCGGGAGAGTA+TGG - chr5_3:7930919-7930938 Msa0795930:intron 50.0%
TGTAGAAGGTTCCCGAGTCA+TGG - chr5_3:7930989-7931008 Msa0795930:intron 50.0%
AAGACAGAGGTGGTGTTTGC+TGG - chr5_3:7931076-7931095 Msa0795930:intron 50.0%
AGACAGAGGTGGTGTTTGCT+GGG - chr5_3:7931077-7931096 Msa0795930:intron 50.0%
TGAGATCTAGATCGGTGGAG+AGG - chr5_3:7931125-7931144 Msa0795930:intron 50.0%
GAGATCTAGATCGGTGGAGA+GGG - chr5_3:7931126-7931145 Msa0795930:intron 50.0%
CCGAGACTTCCCAATATTCC+TGG - chr5_3:7931205-7931224 Msa0795930:intron 50.0%
GCCAACTGAGCTATGCTCAT+AGG + chr5_3:7931503-7931522 None:intergenic 50.0%
ATGAGCATAGCTCAGTTGGC+TGG - chr5_3:7931503-7931522 Msa0795930:intron 50.0%
TGAGCATAGCTCAGTTGGCT+GGG - chr5_3:7931504-7931523 Msa0795930:intron 50.0%
TCAGGCATTAATGCATGGCC+AGG - chr5_3:7932027-7932046 Msa0795930:CDS 50.0%
CAGGCATTAATGCATGGCCA+GGG - chr5_3:7932028-7932047 Msa0795930:CDS 50.0%
TGGCTATGCATTTGCTTCCC+TGG + chr5_3:7932048-7932067 None:intergenic 50.0%
ATTGGACACGGACGTCACTT+TGG + chr5_3:7932287-7932306 None:intergenic 50.0%
AGCCACATGTTATCATGGCC+AGG + chr5_3:7932525-7932544 None:intergenic 50.0%
ATCTACGGTCACCACACCAT+TGG + chr5_3:7933074-7933093 None:intergenic 50.0%
GCTCCATGGCTTTCCTTTGT+TGG - chr5_3:7933142-7933161 Msa0795930:intron 50.0%
CATTGCCCTTCCTTCAGAAG+AGG - chr5_3:7933240-7933259 Msa0795930:CDS 50.0%
TCATAATATGGGCACGGGCT+CGG - chr5_3:7933330-7933349 Msa0795930:intron 50.0%
! AAGGGGAATTGACGGGTCTA+GGG + chr5_3:7933541-7933560 None:intergenic 50.0%
! AAAGGGGAATTGACGGGTCT+AGG + chr5_3:7933542-7933561 None:intergenic 50.0%
TCATCAACAACCGCCGTTGT+CGG - chr5_3:7933579-7933598 Msa0795930:intron 50.0%
GGCGGTGACAACACAGATTT+AGG + chr5_3:7933614-7933633 None:intergenic 50.0%
ATTAGCTGGTAATTCGGCGG+CGG - chr5_3:7933701-7933720 Msa0795930:intron 50.0%
TGGAAGAAGAAGGGACGACA+AGG - chr5_3:7934023-7934042 Msa0795930:intron 50.0%
CACTCGTCACGATAAGTCTC+AGG + chr5_3:7934518-7934537 None:intergenic 50.0%
CTGAGACTTATCGTGACGAG+TGG - chr5_3:7934516-7934535 Msa0795930:CDS 50.0%
!! GTGAGAAGTGGTGTTGCGGT+GGG + chr5_3:7930689-7930708 None:intergenic 55.0%
!! TGTGAGAAGTGGTGTTGCGG+TGG + chr5_3:7930690-7930709 None:intergenic 55.0%
! GGGTGTGAGAAGTGGTGTTG+CGG + chr5_3:7930693-7930712 None:intergenic 55.0%
GAGCGAGGAGAAGAATTGGG+CGG - chr5_3:7930800-7930819 Msa0795930:CDS 55.0%
AGTGGGTCGGATTCTATCGC+TGG + chr5_3:7930842-7930861 None:intergenic 55.0%
GCGATAGAATCCGACCCACT+CGG - chr5_3:7930842-7930861 Msa0795930:CDS 55.0%
AGAATCCGACCCACTCGGTT+TGG - chr5_3:7930847-7930866 Msa0795930:CDS 55.0%
GGCTCGAGTGGATAAGCTTC+CGG + chr5_3:7930880-7930899 None:intergenic 55.0%
AAGGTTCCCGAGTCATGGAG+AGG - chr5_3:7930994-7931013 Msa0795930:intron 55.0%
GGTGAGGTTGAAGACAGAGG+TGG - chr5_3:7931066-7931085 Msa0795930:intron 55.0%
! GACAGAGGTGGTGTTTGCTG+GGG - chr5_3:7931078-7931097 Msa0795930:intron 55.0%
GGGTGAAGGTGGGAAATGGA+CGG - chr5_3:7931102-7931121 Msa0795930:intron 55.0%
GACGGTGAGATCTAGATCGG+TGG - chr5_3:7931120-7931139 Msa0795930:intron 55.0%
ATCGGTGGAGAGGGAATGTG+TGG - chr5_3:7931135-7931154 Msa0795930:intron 55.0%
!! AATAGGTGGTGCTGCCAGTG+CGG - chr5_3:7932413-7932432 Msa0795930:intron 55.0%
GAAAGCCATGGAGCTAACGC+CGG + chr5_3:7933136-7933155 None:intergenic 55.0%
GGGAAAGGAGCAACCTTCCA+AGG + chr5_3:7933172-7933191 None:intergenic 55.0%
CTGCAGAGCAAGTGGATAGC+TGG - chr5_3:7933202-7933221 Msa0795930:intron 55.0%
! AGGGGAATTGACGGGTCTAG+GGG + chr5_3:7933540-7933559 None:intergenic 55.0%
CGGGAAGGTGGAGAAGAAAG+GGG + chr5_3:7933558-7933577 None:intergenic 55.0%
CCGGGAAGGTGGAGAAGAAA+GGG + chr5_3:7933559-7933578 None:intergenic 55.0%
CCCTTTCTTCTCCACCTTCC+CGG - chr5_3:7933556-7933575 Msa0795930:intron 55.0%
ACCGGGAAGGTGGAGAAGAA+AGG + chr5_3:7933560-7933579 None:intergenic 55.0%
!! GTTGTTGATGACCGGGAAGG+TGG + chr5_3:7933570-7933589 None:intergenic 55.0%
!! AACGGCGGTTGTTGATGACC+GGG + chr5_3:7933577-7933596 None:intergenic 55.0%
!! CAACGGCGGTTGTTGATGAC+CGG + chr5_3:7933578-7933597 None:intergenic 55.0%
GAAAACGCATCCGACAACGG+CGG + chr5_3:7933592-7933611 None:intergenic 55.0%
CAACAACCTCCTGAGACCGT+TGG - chr5_3:7933641-7933660 Msa0795930:intron 55.0%
TCAGTGCGGTGTTCCTGCTA+TGG - chr5_3:7934439-7934458 Msa0795930:CDS 55.0%
! GCGTGCTGCTACTAAGCCTC+CGG + chr5_3:7930744-7930763 None:intergenic 60.0%
GGTTCGGGTCCAAACCGAGT+GGG + chr5_3:7930859-7930878 None:intergenic 60.0%
!! CACTCGGTTTGGACCCGAAC+CGG - chr5_3:7930858-7930877 Msa0795930:CDS 60.0%
CGGAAACCCATACTCTCCCG+AGG + chr5_3:7930929-7930948 None:intergenic 60.0%
! AGAGGTGGTGTTTGCTGGGG+TGG - chr5_3:7931081-7931100 Msa0795930:intron 60.0%
! GAGGTGGTGTTTGCTGGGGT+GGG - chr5_3:7931082-7931101 Msa0795930:intron 60.0%
! GTGTTTGCTGGGGTGGGTGA+AGG - chr5_3:7931088-7931107 Msa0795930:intron 60.0%
TTTGCTGGGGTGGGTGAAGG+TGG - chr5_3:7931091-7931110 Msa0795930:intron 60.0%
TTGCTGGGGTGGGTGAAGGT+GGG - chr5_3:7931092-7931111 Msa0795930:intron 60.0%
GGGTGGGTGAAGGTGGGAAA+TGG - chr5_3:7931098-7931117 Msa0795930:intron 60.0%
TTCCACCGGCGTTAGCTCCA+TGG - chr5_3:7933128-7933147 Msa0795930:intron 60.0%
!! GCGGTTGTTGATGACCGGGA+AGG + chr5_3:7933573-7933592 None:intergenic 60.0%
CAACCTCCTGAGACCGTTGG+CGG - chr5_3:7933644-7933663 Msa0795930:intron 60.0%
AATCCTCCGCCAACGGTCTC+AGG + chr5_3:7933653-7933672 None:intergenic 60.0%
GGGGAACAATCCTCCGCCAA+CGG + chr5_3:7933660-7933679 None:intergenic 60.0%
! ACGTGGCGGGGTGTGAGAAG+TGG + chr5_3:7930701-7930720 None:intergenic 65.0%
ACTTCTCACACCCCGCCACG+TGG - chr5_3:7930700-7930719 Msa0795930:exon 65.0%
TGCTACTAAGCCTCCGGCGC+CGG + chr5_3:7930738-7930757 None:intergenic 65.0%
CGGGTCCAAACCGAGTGGGT+CGG + chr5_3:7930855-7930874 None:intergenic 65.0%
! CGGTTCGGGTCCAAACCGAG+TGG + chr5_3:7930860-7930879 None:intergenic 65.0%
AGCCATGGAGCTAACGCCGG+TGG + chr5_3:7933133-7933152 None:intergenic 65.0%
CACGGGCTCGGCCAATGTTC+AGG - chr5_3:7933342-7933361 Msa0795930:intron 65.0%
CCGATGACTGCCACGTGGCG+GGG + chr5_3:7930713-7930732 None:intergenic 70.0%
CCCCGCCACGTGGCAGTCAT+CGG - chr5_3:7930710-7930729 Msa0795930:exon 70.0%
GCCGATGACTGCCACGTGGC+GGG + chr5_3:7930714-7930733 None:intergenic 70.0%
CGCCGATGACTGCCACGTGG+CGG + chr5_3:7930715-7930734 None:intergenic 70.0%
CACGTGGCAGTCATCGGCGC+CGG - chr5_3:7930716-7930735 Msa0795930:CDS 70.0%
GCACGCGAGCTCCGACGAGA+AGG - chr5_3:7930758-7930777 Msa0795930:CDS 70.0%
CCTCCGCCAACGGTCTCAGG+AGG + chr5_3:7933650-7933669 None:intergenic 70.0%
CCTCCTGAGACCGTTGGCGG+AGG - chr5_3:7933647-7933666 Msa0795930:intron 70.0%
!! CGGCGCCGATGACTGCCACG+TGG + chr5_3:7930718-7930737 None:intergenic 75.0%
GCAGGGGCGGGGTCTGAACC+CGG - chr5_3:7931543-7931562 Msa0795930:intron 75.0%
!!! GCAGTCATCGGCGCCGGCGC+CGG - chr5_3:7930722-7930741 Msa0795930:CDS 80.0%
!!! GTCATCGGCGCCGGCGCCGG+AGG - chr5_3:7930725-7930744 Msa0795930:CDS 85.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 7930496 7934811 7930496 ID=Msa0795930;Name=Msa0795930
chr5_3 mRNA 7930496 7934811 7930496 ID=Msa0795930-mRNA-1;Parent=Msa0795930;Name=Msa0795930-mRNA-1;_AED=0.04;_eAED=0.04;_QI=175|1|1|1|1|1|6|216|455
chr5_3 exon 7930496 7930894 7930496 ID=Msa0795930-mRNA-1:exon:3295;Parent=Msa0795930-mRNA-1
chr5_3 exon 7931944 7932265 7931944 ID=Msa0795930-mRNA-1:exon:3294;Parent=Msa0795930-mRNA-1
chr5_3 exon 7932555 7932637 7932555 ID=Msa0795930-mRNA-1:exon:3293;Parent=Msa0795930-mRNA-1
chr5_3 exon 7932753 7932905 7932753 ID=Msa0795930-mRNA-1:exon:3292;Parent=Msa0795930-mRNA-1
chr5_3 exon 7933206 7933276 7933206 ID=Msa0795930-mRNA-1:exon:3291;Parent=Msa0795930-mRNA-1
chr5_3 exon 7934081 7934811 7934081 ID=Msa0795930-mRNA-1:exon:3290;Parent=Msa0795930-mRNA-1
chr5_3 five_prime_UTR 7934637 7934811 7934637 ID=Msa0795930-mRNA-1:five_prime_utr;Parent=Msa0795930-mRNA-1
chr5_3 CDS 7934081 7934636 7934081 ID=Msa0795930-mRNA-1:cds;Parent=Msa0795930-mRNA-1
chr5_3 CDS 7933206 7933276 7933206 ID=Msa0795930-mRNA-1:cds;Parent=Msa0795930-mRNA-1
chr5_3 CDS 7932753 7932905 7932753 ID=Msa0795930-mRNA-1:cds;Parent=Msa0795930-mRNA-1
chr5_3 CDS 7932555 7932637 7932555 ID=Msa0795930-mRNA-1:cds;Parent=Msa0795930-mRNA-1
chr5_3 CDS 7931944 7932265 7931944 ID=Msa0795930-mRNA-1:cds;Parent=Msa0795930-mRNA-1
chr5_3 CDS 7930712 7930894 7930712 ID=Msa0795930-mRNA-1:cds;Parent=Msa0795930-mRNA-1
chr5_3 three_prime_UTR 7930496 7930711 7930496 ID=Msa0795930-mRNA-1:three_prime_utr;Parent=Msa0795930-mRNA-1
Gene Sequence

>Msa0795930

ATGAAATTCATCATGCCCACCGCAACACCACTTCTCACACCCCGCCACGTGGCAGTCATCGGCGCCGGCGCCGGAGGCTTAGTAGCAGCACGCGAGCTCCGACGAGAAGGACATCAAGTAGTAGTCTTCGAGCGAGGAGAAGAATTGGGCGGTTCATGGGTCTATACTCCAGCGATAGAATCCGACCCACTCGGTTTGGACCCGAACCGGAAGCTTATCCACTCGAGCCTATACAATTCACTCCGAACCAATTTGCCTCGGGAGAGTATGGGTTTCCGAGATTACCCTTTTAGAAGAAAAGAAGAGAAAGGGAGAGATTGTAGAAGGTTCCCGAGTCATGGAGAGGTTTTGATGTATTTGAAGGATTTTGCTGAAGATTTTGAGATTGGTGATTTGGTGAGGTTGAAGACAGAGGTGGTGTTTGCTGGGGTGGGTGAAGGTGGGAAATGGACGGTGAGATCTAGATCGGTGGAGAGGGAATGTGTGGATGAGATTTACGATGCTGTTGTTGTTTGCAATGGACATTATTTTCAACCGAGACTTCCCAATATTCCTGGCATTAATGCATGGCCAGGGAAGCAAATGCATAGCCATAATTACAGAACACCCGAGCCCTTTCAAGATCAAGTTGTAGTTCTAATAGGTGGTGCTGCCAGTGCGGTTGATATTTCTCGAGACGTGGCAACCGTTGCTAAAGAAGTTCATATTGCAGCTAGATCTGTTGAAGAAGATAAGCTTGGAAAGTTACCTGGCCATGATAACATGTGGCTTCATTCTATGATTGACAGTGTTCATGAAGATGGTACAGTGGTTTTCAAAGATGGAAATGCAGTTATTGCTGACTTCATTGTACATTGCACAGGGTACAAGTATGATTTTCCTTTCCTTGAAACCAATGGTGTGGTGACCGTAGATGACAATCGTGTTGGACCGCTCTACAAGCATGTTTTTCCACCGGCGTTAGCTCCATGGCTTTCCTTTGTTGGGTTACCTTGGAAGGTTGCTCCTTTCCCTTTGTTTGAACTGCAGAGCAAGTGGATAGCTGGAGTTTTGTCTAATCGCATTGCCCTTCCTTCAGAAGAGGAGATGACTAAAGATATTGAGGCTTTTTACTTGTCACTTGAAGAATCTGGCATTCCTAAGAGGCACACTCATAATATGGGCACGGGCTCGGCCAATGTTCAGTGGGACTACAATAACTGGATTGCTGATCAGTGCGGTGTTCCTGCTATGGAAGAATGGAGAACGCAAATGTATATGGCTACATCTAAGAACAGGCTCTTGCGACCTGAGACTTATCGTGACGAGTGGGATGATGATGACATTGTTCAACAAGCTGAGCATGAATTTGCTAATTATCAGATATAA

Protein sequence

>Msa0795930

MKFIMPTATPLLTPRHVAVIGAGAGGLVAARELRREGHQVVVFERGEELGGSWVYTPAIESDPLGLDPNRKLIHSSLYNSLRTNLPRESMGFRDYPFRRKEEKGRDCRRFPSHGEVLMYLKDFAEDFEIGDLVRLKTEVVFAGVGEGGKWTVRSRSVERECVDEIYDAVVVCNGHYFQPRLPNIPGINAWPGKQMHSHNYRTPEPFQDQVVVLIGGAASAVDISRDVATVAKEVHIAARSVEEDKLGKLPGHDNMWLHSMIDSVHEDGTVVFKDGNAVIADFIVHCTGYKYDFPFLETNGVVTVDDNRVGPLYKHVFPPALAPWLSFVGLPWKVAPFPLFELQSKWIAGVLSNRIALPSEEEMTKDIEAFYLSLEESGIPKRHTHNMGTGSANVQWDYNNWIADQCGVPAMEEWRTQMYMATSKNRLLRPETYRDEWDDDDIVQQAEHEFANYQI*