AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1412830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1412830 MtrunA17_Chr3g0115691 97.238 181 5 0 1 181 162 342 6.62e-129 365
Msa1412830 MtrunA17_Chr2g0304641 54.494 178 75 2 4 180 170 342 1.53e-64 201
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1412830 AT1G78140.1 75.000 180 44 1 2 180 175 354 4.07e-99 290
Msa1412830 AT2G41040.1 50.829 181 78 3 4 180 179 352 6.20e-58 185

Find 55 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAAATTTGTGTACTCTTT+TGG 0.188572 tig0023964:-1167 None:intergenic
TAGAATATAAATCAAGTATC+AGG 0.201212 tig0023964:+2564 Msa1412830:intron
TCTGCTGCAAAGCCGAAATA+AGG 0.286504 tig0023964:+2687 Msa1412830:CDS
AGGAAACTCAAACCTTATTT+CGG 0.331192 tig0023964:-2699 None:intergenic
GGTTTCCTAAAACCAGTATT+AGG 0.339433 tig0023964:+996 Msa1412830:CDS
ATGATATTTCCACCTAATAC+TGG 0.344800 tig0023964:-1008 None:intergenic
GGATTTAAATGCATTAGAAA+TGG 0.364474 tig0023964:+2648 Msa1412830:CDS
TATGACATGCAGATAATCTA+AGG 0.366711 tig0023964:-2897 None:intergenic
ACAGAATTGTGATGAGTTCA+TGG 0.390984 tig0023964:-3102 None:intergenic
TGTTGCAACCACCTACATAC+TGG 0.395943 tig0023964:+1988 Msa1412830:CDS
ATTATCTGCATGTCATAAGT+TGG 0.399907 tig0023964:+2903 Msa1412830:three_prime_UTR
AATAAAGTAGAAGGGTCAAA+TGG 0.439677 tig0023964:-3043 None:intergenic
GATTTAAATGCATTAGAAAT+GGG 0.440850 tig0023964:+2649 Msa1412830:CDS
GCCGCAGTTTGAACAGATGA+AGG 0.448015 tig0023964:+974 Msa1412830:intron
TGATGAGTTCATGGAGTTCA+TGG 0.451481 tig0023964:-3093 None:intergenic
GTTAGATTAACCTCTTTCTC+AGG 0.455151 tig0023964:-313 None:intergenic
TCTCTGCAAGGCGTGTGGGC+TGG 0.459953 tig0023964:+2623 Msa1412830:CDS
TCACTTGGTACATAAAGATA+AGG 0.470936 tig0023964:+2839 Msa1412830:three_prime_UTR
ATGTTATGAATTTGTTCAGC+AGG 0.472552 tig0023964:+1133 Msa1412830:CDS
AAGTTCACGTTCAGAGAGAA+AGG 0.474732 tig0023964:-2595 None:intergenic
TGCAAGGCGTGTGGGCTGGT+CGG 0.485394 tig0023964:+2627 Msa1412830:CDS
CATTTCTCACACATCATGAA+TGG 0.489996 tig0023964:-2985 None:intergenic
ATCGATGCTAGTTGTGGAAG+TGG 0.499787 tig0023964:+1029 Msa1412830:CDS
ATCATCACTTCACTTGGAAA+AGG 0.500065 tig0023964:+2930 Msa1412830:three_prime_UTR
CAGGAGCAGCTCTTCACTGT+TGG 0.508797 tig0023964:+1376 Msa1412830:CDS
GAAGCTCTCTGCAAGGCGTG+TGG 0.509317 tig0023964:+2618 Msa1412830:CDS
TTATCTGCATGTCATAAGTT+GGG 0.509558 tig0023964:+2904 Msa1412830:three_prime_UTR
TTAACCTCTTTCTCAGGACC+TGG 0.515325 tig0023964:-307 None:intergenic
GCAGCAGAAATCATCACAAA+AGG 0.517241 tig0023964:-2672 None:intergenic
GTTAAAAGCGTGGTTTCACT+TGG 0.525905 tig0023964:+2824 Msa1412830:three_prime_UTR
TCCTGCATGCACAGCATCGA+TGG 0.526627 tig0023964:-1358 None:intergenic
GGGAAGATCATCACTTCACT+TGG 0.526770 tig0023964:+2924 Msa1412830:three_prime_UTR
TCCATCGATGCTGTGCATGC+AGG 0.527473 tig0023964:+1357 Msa1412830:CDS
AAGCTCTCTGCAAGGCGTGT+GGG 0.541226 tig0023964:+2619 Msa1412830:CDS
AGAATATAAATCAAGTATCA+GGG 0.544688 tig0023964:+2565 Msa1412830:intron
GCAACCACCTACATACTGGA+TGG 0.544849 tig0023964:+1992 Msa1412830:CDS
CCGCAGTTTGAACAGATGAA+GGG 0.551772 tig0023964:+975 Msa1412830:intron
TAAAACTGAATATCAAATGC+AGG 0.557635 tig0023964:-22 None:intergenic
TCGATGGAACTTGAAACAAA+AGG 0.560574 tig0023964:-1342 None:intergenic
AAAACCACCCCATACAGAAA+AGG 0.561587 tig0023964:-284 None:intergenic
TTCCTAAAACCAGTATTAGG+TGG 0.565845 tig0023964:+999 Msa1412830:CDS
ATCACTTCACTTGGAAAAGG+TGG 0.571336 tig0023964:+2933 Msa1412830:three_prime_UTR
GTTGCAACAAAGACACCTCC+AGG 0.580734 tig0023964:-1974 None:intergenic
AAAAGGCCCATCCAGTATGT+AGG 0.581231 tig0023964:-1999 None:intergenic
AATATCATCGATGCTAGTTG+TGG 0.584800 tig0023964:+1023 Msa1412830:CDS
CTTACAGCTGCTGATGGTGA+AGG 0.590848 tig0023964:-1399 None:intergenic
CAACCACCTACATACTGGAT+GGG 0.592989 tig0023964:+1993 Msa1412830:CDS
TATTCACTTACAGCTGCTGA+TGG 0.608738 tig0023964:-1405 None:intergenic
TGAACTTGAAGCTCTCTGCA+AGG 0.624469 tig0023964:+2611 Msa1412830:CDS
AAAGTAGAAGGGTCAAATGG+AGG 0.641672 tig0023964:-3040 None:intergenic
AGGCCCATCCAGTATGTAGG+TGG 0.662241 tig0023964:-1996 None:intergenic
TCATAGAGAAATGATACCAG+CGG 0.688632 tig0023964:-244 None:intergenic
GTGTTGATCTGTTAAAAGCG+TGG 0.700237 tig0023964:+2814 Msa1412830:three_prime_UTR
ACTACTCAGAGAATATGTTG+AGG 0.724151 tig0023964:+1108 Msa1412830:CDS
CATGATGTGTGAGAAATGTG+AGG 0.727942 tig0023964:+2990 Msa1412830:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATCATTAATTAGTATT+TGG + tig0023964:1424-1443 Msa1412830:intron 10.0%
!! TTCAAAAGATATTTAAAAAA+GGG - tig0023964:1674-1693 None:intergenic 10.0%
!! TTTCAAAAGATATTTAAAAA+AGG - tig0023964:1675-1694 None:intergenic 10.0%
!!! TTTTTAAATATCTTTTGAAA+TGG + tig0023964:1675-1694 Msa1412830:intron 10.0%
!! AAAAATAAAATAAAGTAGAA+GGG - tig0023964:3054-3073 None:intergenic 10.0%
!! AAAAAATAAAATAAAGTAGA+AGG - tig0023964:3055-3074 None:intergenic 10.0%
!!! TTTTATTATATCTATGTAAG+TGG - tig0023964:61-80 None:intergenic 15.0%
!!! ATTCTTGATATTTGTTATAT+AGG + tig0023964:476-495 Msa1412830:intron 15.0%
!! ATATTAAAATTATCTTGTTG+AGG + tig0023964:876-895 Msa1412830:intron 15.0%
!!! TTTGAAATATAAACTACTTA+TGG + tig0023964:1799-1818 Msa1412830:intron 15.0%
!!! ATTTTTTTCTTATGTATTTG+AGG + tig0023964:3068-3087 Msa1412830:three_prime_UTR 15.0%
!!! TGTAAATATCTTTTGAAATG+AGG + tig0023964:1478-1497 Msa1412830:intron 20.0%
!!! GTAAATATCTTTTGAAATGA+GGG + tig0023964:1479-1498 Msa1412830:intron 20.0%
!!! TAAATATCTTTTGAAATGAG+GGG + tig0023964:1480-1499 Msa1412830:intron 20.0%
!!! AAATATCTTTTGAAATGGTT+TGG + tig0023964:1680-1699 Msa1412830:intron 20.0%
!!! ATATTCTCATGTATTTTCAT+GGG - tig0023964:2214-2233 None:intergenic 20.0%
!!! AATATTCTCATGTATTTTCA+TGG - tig0023964:2215-2234 None:intergenic 20.0%
!!! TTCTAAAATGACAAACAAAT+TGG - tig0023964:2549-2568 None:intergenic 20.0%
!! TAGAATATAAATCAAGTATC+AGG + tig0023964:2564-2583 Msa1412830:intron 20.0%
!! AGAATATAAATCAAGTATCA+GGG + tig0023964:2565-2584 Msa1412830:intron 20.0%
!! GATTTAAATGCATTAGAAAT+GGG + tig0023964:2649-2668 Msa1412830:CDS 20.0%
!!! ATGATAATGTCAAGAAATAA+AGG - tig0023964:2761-2780 None:intergenic 20.0%
! TAAAACTGAATATCAAATGC+AGG - tig0023964:25-44 None:intergenic 25.0%
!!! ACCCACATTTTTTTTCAATA+TGG + tig0023964:371-390 Msa1412830:intron 25.0%
! GCCATATTGAAAAAAAATGT+GGG - tig0023964:375-394 None:intergenic 25.0%
! AGCCATATTGAAAAAAAATG+TGG - tig0023964:376-395 None:intergenic 25.0%
!!! TTTTTCAATATGGCTTCTTA+TGG + tig0023964:381-400 Msa1412830:intron 25.0%
! TCAAGATTATTTGCAAAAAG+TGG + tig0023964:1059-1078 Msa1412830:CDS 25.0%
!!! AAAAAGTGGACTTTTTTCTT+TGG + tig0023964:1073-1092 Msa1412830:CDS 25.0%
!! TAGAAATTTGTGTACTCTTT+TGG - tig0023964:1170-1189 None:intergenic 25.0%
! AATAGTTCCATTAAAACATC+GGG - tig0023964:1228-1247 None:intergenic 25.0%
! GAATAGTTCCATTAAAACAT+CGG - tig0023964:1229-1248 None:intergenic 25.0%
!! TCATAAACATTTCTTTTGCT+AGG + tig0023964:1283-1302 Msa1412830:intron 25.0%
! TGGTACAAATAATTTAACCA+TGG + tig0023964:1700-1719 Msa1412830:intron 25.0%
! ATTCATTATCGTTAAAAGCA+CGG - tig0023964:1777-1796 None:intergenic 25.0%
! GTAACTTATCCTAAATGTTA+CGG - tig0023964:1832-1851 None:intergenic 25.0%
! TATAAAACTTGTGCCATATT+TGG + tig0023964:2056-2075 Msa1412830:intron 25.0%
!! ATTTTCATGGGTATGTAAAA+TGG - tig0023964:2202-2221 None:intergenic 25.0%
! GTATAACTTTGAATCTGAAT+TGG - tig0023964:2443-2462 None:intergenic 25.0%
!! CTTTTCATGTTTGACATATA+GGG - tig0023964:2465-2484 None:intergenic 25.0%
! CTATATGTCAAACATGAAAA+GGG + tig0023964:2464-2483 Msa1412830:intron 25.0%
!!! TCATATCAAGTTTTGAATAG+TGG + tig0023964:2523-2542 Msa1412830:intron 25.0%
! GGATTTAAATGCATTAGAAA+TGG + tig0023964:2648-2667 Msa1412830:CDS 25.0%
! TAATGAGTGTTTGTTGAATC+AGG + tig0023964:218-237 Msa1412830:five_prime_UTR 30.0%
ATGGCTTCTTATGGATAAAT+TGG + tig0023964:390-409 Msa1412830:intron 30.0%
TAGGTACATTAAGAGTTTAG+AGG + tig0023964:495-514 Msa1412830:intron 30.0%
GATAATCAAGACAAACTGAA+AGG - tig0023964:732-751 None:intergenic 30.0%
AGTTTGTCTTGATTATCGTT+TGG + tig0023964:735-754 Msa1412830:intron 30.0%
TGAATAGAAGAACATAGACT+TGG + tig0023964:762-781 Msa1412830:intron 30.0%
! TCTTTAGAAGTATGTATGAC+AGG - tig0023964:855-874 None:intergenic 30.0%
AATTATCTTGTTGAGGCATA+TGG + tig0023964:883-902 Msa1412830:intron 30.0%
ATTATCTTGTTGAGGCATAT+GGG + tig0023964:884-903 Msa1412830:intron 30.0%
AGTCGTTACAATTCATGAAA+AGG - tig0023964:931-950 None:intergenic 30.0%
ATGATATTTCCACCTAATAC+TGG - tig0023964:1011-1030 None:intergenic 30.0%
! ATGTTATGAATTTGTTCAGC+AGG + tig0023964:1133-1152 Msa1412830:CDS 30.0%
!! TTTTGAACCCGATGTTTTAA+TGG + tig0023964:1218-1237 Msa1412830:intron 30.0%
ATATTTAAAAAAGGGCAACC+CGG - tig0023964:1666-1685 None:intergenic 30.0%
! CAATACTGCATAAACCTTTT+GGG - tig0023964:1729-1748 None:intergenic 30.0%
TGACGCAATGTACTTAAAAA+CGG - tig0023964:2034-2053 None:intergenic 30.0%
AACTTACTGAGTTTATCTAC+TGG - tig0023964:2132-2151 None:intergenic 30.0%
! TCAATTTAGTTTCTCATCGT+AGG + tig0023964:2265-2284 Msa1412830:intron 30.0%
TATTACATACCAAGATTGTG+AGG + tig0023964:2377-2396 Msa1412830:intron 30.0%
! CCTTTTCATGTTTGACATAT+AGG - tig0023964:2466-2485 None:intergenic 30.0%
CCTATATGTCAAACATGAAA+AGG + tig0023964:2463-2482 Msa1412830:intron 30.0%
! AGGAAACTCAAACCTTATTT+CGG - tig0023964:2702-2721 None:intergenic 30.0%
TCACTTGGTACATAAAGATA+AGG + tig0023964:2839-2858 Msa1412830:three_prime_UTR 30.0%
TATGACATGCAGATAATCTA+AGG - tig0023964:2900-2919 None:intergenic 30.0%
ATTATCTGCATGTCATAAGT+TGG + tig0023964:2903-2922 Msa1412830:three_prime_UTR 30.0%
TTATCTGCATGTCATAAGTT+GGG + tig0023964:2904-2923 Msa1412830:three_prime_UTR 30.0%
AATAAAGTAGAAGGGTCAAA+TGG - tig0023964:3046-3065 None:intergenic 30.0%
TCATAGAGAAATGATACCAG+CGG - tig0023964:247-266 None:intergenic 35.0%
TGGTATCATTTCTCTATGAG+AGG + tig0023964:248-267 Msa1412830:five_prime_UTR 35.0%
GGTATCATTTCTCTATGAGA+GGG + tig0023964:249-268 Msa1412830:five_prime_UTR 35.0%
GTATCATTTCTCTATGAGAG+GGG + tig0023964:250-269 Msa1412830:five_prime_UTR 35.0%
GTTAGATTAACCTCTTTCTC+AGG - tig0023964:316-335 None:intergenic 35.0%
AAAATGTGGGTCAAACAAGA+GGG - tig0023964:362-381 None:intergenic 35.0%
AAAAATGTGGGTCAAACAAG+AGG - tig0023964:363-382 None:intergenic 35.0%
AATATCCCTACTGAAGAAAG+TGG - tig0023964:436-455 None:intergenic 35.0%
CAGTAGGGATATTATCCAAT+TGG + tig0023964:443-462 Msa1412830:intron 35.0%
AGAATCACAGTTCTTCCAAT+TGG - tig0023964:461-480 None:intergenic 35.0%
CAACAACTACTTATGCTAAG+CGG + tig0023964:543-562 Msa1412830:intron 35.0%
TATATGAGCTAATTCGTAGC+AGG - tig0023964:670-689 None:intergenic 35.0%
TTGTCTTGATTATCGTTTGG+CGG + tig0023964:738-757 Msa1412830:intron 35.0%
GAAGAACATAGACTTGGAAA+TGG + tig0023964:768-787 Msa1412830:intron 35.0%
GGTTTCCTAAAACCAGTATT+AGG + tig0023964:996-1015 Msa1412830:CDS 35.0%
TTCCTAAAACCAGTATTAGG+TGG + tig0023964:999-1018 Msa1412830:CDS 35.0%
!!! TTCCACCTAATACTGGTTTT+AGG - tig0023964:1004-1023 None:intergenic 35.0%
AATATCATCGATGCTAGTTG+TGG + tig0023964:1023-1042 Msa1412830:CDS 35.0%
!!! TGGACTTTTTTCTTTGGTTG+TGG + tig0023964:1079-1098 Msa1412830:CDS 35.0%
ACTACTCAGAGAATATGTTG+AGG + tig0023964:1108-1127 Msa1412830:CDS 35.0%
! TTTTGCTAGGAACTTCATCT+TGG + tig0023964:1296-1315 Msa1412830:intron 35.0%
TCGATGGAACTTGAAACAAA+AGG - tig0023964:1345-1364 None:intergenic 35.0%
!!! CTTACCTTGTTTTACACAAG+AGG - tig0023964:1576-1595 None:intergenic 35.0%
CTCTTGTGTAAAACAAGGTA+AGG + tig0023964:1574-1593 Msa1412830:intron 35.0%
TTTAACCATGGTATCCCAAA+AGG + tig0023964:1712-1731 Msa1412830:intron 35.0%
!!! ATAAACCTTTTGGGATACCA+TGG - tig0023964:1720-1739 None:intergenic 35.0%
! GCAATACTGCATAAACCTTT+TGG - tig0023964:1730-1749 None:intergenic 35.0%
GGAAAGTTACCGTAACATTT+AGG + tig0023964:1820-1839 Msa1412830:intron 35.0%
AGTAAGTGAGACAAGCTAAA+CGG - tig0023964:1894-1913 None:intergenic 35.0%
TCAGGTCATGGAAATTATAG+AGG - tig0023964:1919-1938 None:intergenic 35.0%
TGTACTTAAAAACGGAACAG+CGG - tig0023964:2026-2045 None:intergenic 35.0%
!!! GTTTTTAAGTACATTGCGTC+AGG + tig0023964:2033-2052 Msa1412830:CDS 35.0%
TAACTTTGTCCTTCAGCTAA+AGG + tig0023964:2298-2317 Msa1412830:intron 35.0%
!! GTGTTATTTCCTTTAGCTGA+AGG - tig0023964:2310-2329 None:intergenic 35.0%
AAAGACAGGTGATATCAGTT+TGG - tig0023964:2403-2422 None:intergenic 35.0%
! GAAATAAGGTTTGAGTTTCC+TGG + tig0023964:2701-2720 Msa1412830:intron 35.0%
ATCATCACTTCACTTGGAAA+AGG + tig0023964:2930-2949 Msa1412830:three_prime_UTR 35.0%
CATTTCTCACACATCATGAA+TGG - tig0023964:2988-3007 None:intergenic 35.0%
ACAGAATTGTGATGAGTTCA+TGG - tig0023964:3105-3124 None:intergenic 35.0%
! GCGTCAAACCTTTTCTGTAT+GGG + tig0023964:276-295 Msa1412830:five_prime_UTR 40.0%
! CGTCAAACCTTTTCTGTATG+GGG + tig0023964:277-296 Msa1412830:five_prime_UTR 40.0%
AAAACCACCCCATACAGAAA+AGG - tig0023964:287-306 None:intergenic 40.0%
TACCTTCCACTTTCTTCAGT+AGG + tig0023964:427-446 Msa1412830:intron 40.0%
ACCTTCCACTTTCTTCAGTA+GGG + tig0023964:428-447 Msa1412830:intron 40.0%
AAACATCCATGAGCTCTGTT+GGG - tig0023964:696-715 None:intergenic 40.0%
! GTTGAGGCATATGGGTTATT+TGG + tig0023964:892-911 Msa1412830:intron 40.0%
GTCACTCCTTCTGTTGAATT+CGG + tig0023964:952-971 Msa1412830:intron 40.0%
! TTTTTCTTTGGTTGTGGCTC+TGG + tig0023964:1085-1104 Msa1412830:CDS 40.0%
TATTCACTTACAGCTGCTGA+TGG - tig0023964:1408-1427 None:intergenic 40.0%
! TTTGAAATGAGGGGTAACCT+TGG + tig0023964:1489-1508 Msa1412830:intron 40.0%
GTTGTTGTCATGTGACTGAA+AGG + tig0023964:1525-1544 Msa1412830:intron 40.0%
ACAGCCTCTTGTGTAAAACA+AGG + tig0023964:1569-1588 Msa1412830:intron 40.0%
CGTACAATACACCAAATGGT+GGG + tig0023964:1600-1619 Msa1412830:intron 40.0%
AGGTTTATGCAGTATTGCGT+TGG + tig0023964:1732-1751 Msa1412830:intron 40.0%
TTTCCATGACCTGATATTGC+AGG + tig0023964:1925-1944 Msa1412830:intron 40.0%
TTTCAGCTACCTGCAATATC+AGG - tig0023964:1937-1956 None:intergenic 40.0%
! ATAAGTCGCATTTTACGACC+TGG + tig0023964:1956-1975 Msa1412830:CDS 40.0%
AAAAACGGAACAGCGGTAAA+AGG - tig0023964:2019-2038 None:intergenic 40.0%
TCCAACAAGCATGCCAAATA+TGG - tig0023964:2072-2091 None:intergenic 40.0%
GGCTCATTTGTCTAATAGCT+TGG - tig0023964:2181-2200 None:intergenic 40.0%
CCACGAATGTGAGAGAAAAT+TGG - tig0023964:2332-2351 None:intergenic 40.0%
! CCAATTTTCTCTCACATTCG+TGG + tig0023964:2329-2348 Msa1412830:intron 40.0%
ACCTGTCTTTCAAGCAACAA+AGG + tig0023964:2413-2432 Msa1412830:intron 40.0%
CCTGTCTTTCAAGCAACAAA+GGG + tig0023964:2414-2433 Msa1412830:intron 40.0%
AAGTTCACGTTCAGAGAGAA+AGG - tig0023964:2598-2617 None:intergenic 40.0%
GCAGCAGAAATCATCACAAA+AGG - tig0023964:2675-2694 None:intergenic 40.0%
! GTGTTGATCTGTTAAAAGCG+TGG + tig0023964:2814-2833 Msa1412830:three_prime_UTR 40.0%
! GTTAAAAGCGTGGTTTCACT+TGG + tig0023964:2824-2843 Msa1412830:three_prime_UTR 40.0%
ATCACTTCACTTGGAAAAGG+TGG + tig0023964:2933-2952 Msa1412830:three_prime_UTR 40.0%
CATGATGTGTGAGAAATGTG+AGG + tig0023964:2990-3009 Msa1412830:three_prime_UTR 40.0%
AAAGTAGAAGGGTCAAATGG+AGG - tig0023964:3043-3062 None:intergenic 40.0%
TGATGAGTTCATGGAGTTCA+TGG - tig0023964:3096-3115 None:intergenic 40.0%
! GGCGTCAAACCTTTTCTGTA+TGG + tig0023964:275-294 Msa1412830:five_prime_UTR 45.0%
! CAAACCTTTTCTGTATGGGG+TGG + tig0023964:280-299 Msa1412830:five_prime_UTR 45.0%
! TTTTCCAGGTCCTGAGAAAG+AGG + tig0023964:303-322 Msa1412830:five_prime_UTR 45.0%
TTAACCTCTTTCTCAGGACC+TGG - tig0023964:310-329 None:intergenic 45.0%
TCCCTACTGAAGAAAGTGGA+AGG - tig0023964:432-451 None:intergenic 45.0%
AACATCCATGAGCTCTGTTG+GGG - tig0023964:695-714 None:intergenic 45.0%
GAAACATCCATGAGCTCTGT+TGG - tig0023964:697-716 None:intergenic 45.0%
CCCTTCATCTGTTCAAACTG+CGG - tig0023964:978-997 None:intergenic 45.0%
CCGCAGTTTGAACAGATGAA+GGG + tig0023964:975-994 Msa1412830:intron 45.0%
ATCGATGCTAGTTGTGGAAG+TGG + tig0023964:1029-1048 Msa1412830:CDS 45.0%
TCATGTGACTGAAAGGTCAC+AGG + tig0023964:1532-1551 Msa1412830:intron 45.0%
AAGGTCACAGGTTCAAGTCA+TGG + tig0023964:1544-1563 Msa1412830:intron 45.0%
GCTGCGTACAATACACCAAA+TGG + tig0023964:1596-1615 Msa1412830:intron 45.0%
GCGTACAATACACCAAATGG+TGG + tig0023964:1599-1618 Msa1412830:intron 45.0%
CTACCTGCAATATCAGGTCA+TGG - tig0023964:1931-1950 None:intergenic 45.0%
TGTTGCAACCACCTACATAC+TGG + tig0023964:1988-2007 Msa1412830:CDS 45.0%
CAACCACCTACATACTGGAT+GGG + tig0023964:1993-2012 Msa1412830:CDS 45.0%
AAAAGGCCCATCCAGTATGT+AGG - tig0023964:2002-2021 None:intergenic 45.0%
GCCATATTTGGCATGCTTGT+TGG + tig0023964:2068-2087 Msa1412830:intron 45.0%
AGCTCTACTTACTCTCACTC+AGG - tig0023964:2103-2122 None:intergenic 45.0%
TCAGTTTGGCCTCACAATCT+TGG - tig0023964:2389-2408 None:intergenic 45.0%
! CCCTTTGTTGCTTGAAAGAC+AGG - tig0023964:2417-2436 None:intergenic 45.0%
TGAACTTGAAGCTCTCTGCA+AGG + tig0023964:2611-2630 Msa1412830:CDS 45.0%
TCTGCTGCAAAGCCGAAATA+AGG + tig0023964:2687-2706 Msa1412830:CDS 45.0%
GGGAAGATCATCACTTCACT+TGG + tig0023964:2924-2943 Msa1412830:three_prime_UTR 45.0%
CATTTCTCTATGAGAGGGGC+TGG + tig0023964:254-273 Msa1412830:five_prime_UTR 50.0%
! TCTGTATGGGGTGGTTTTCC+AGG + tig0023964:289-308 Msa1412830:five_prime_UTR 50.0%
TGGGTCAAACAAGAGGGAGT+TGG - tig0023964:356-375 None:intergenic 50.0%
ACTTATGCTAAGCGGCGACT+AGG + tig0023964:551-570 Msa1412830:intron 50.0%
ATATGCCCCAACAGAGCTCA+TGG + tig0023964:687-706 Msa1412830:intron 50.0%
GCCGCAGTTTGAACAGATGA+AGG + tig0023964:974-993 Msa1412830:intron 50.0%
! CTTACAGCTGCTGATGGTGA+AGG - tig0023964:1402-1421 None:intergenic 50.0%
CAACTTTACCAGTTGCGCCA+AGG - tig0023964:1509-1528 None:intergenic 50.0%
! AGTCGCATTTTACGACCTGG+AGG + tig0023964:1959-1978 Msa1412830:CDS 50.0%
GTTGCAACAAAGACACCTCC+AGG - tig0023964:1977-1996 None:intergenic 50.0%
GCAACCACCTACATACTGGA+TGG + tig0023964:1992-2011 Msa1412830:CDS 50.0%
TTGTTGAATCAGGACGCCGC+TGG + tig0023964:228-247 Msa1412830:five_prime_UTR 55.0%
CTGCGGCCGAATTCAACAGA+AGG - tig0023964:961-980 None:intergenic 55.0%
TCCATCGATGCTGTGCATGC+AGG + tig0023964:1357-1376 Msa1412830:CDS 55.0%
! TCCTGCATGCACAGCATCGA+TGG - tig0023964:1361-1380 None:intergenic 55.0%
CAGGAGCAGCTCTTCACTGT+TGG + tig0023964:1376-1395 Msa1412830:CDS 55.0%
CTAGAGCTCCCGCATATGCA+GGG - tig0023964:1639-1658 None:intergenic 55.0%
ACTAGAGCTCCCGCATATGC+AGG - tig0023964:1640-1659 None:intergenic 55.0%
AGGCCCATCCAGTATGTAGG+TGG - tig0023964:1999-2018 None:intergenic 55.0%
AAGCTCTCTGCAAGGCGTGT+GGG + tig0023964:2619-2638 Msa1412830:CDS 55.0%
GCTAAGCGGCGACTAGGTTG+TGG + tig0023964:557-576 Msa1412830:intron 60.0%
AGGGGTAACCTTGGCGCAAC+TGG + tig0023964:1498-1517 Msa1412830:intron 60.0%
CATATGCAGGGTGCGGGAAG+GGG - tig0023964:1627-1646 None:intergenic 60.0%
GCATATGCAGGGTGCGGGAA+GGG - tig0023964:1628-1647 None:intergenic 60.0%
CTTCCCGCACCCTGCATATG+CGG + tig0023964:1627-1646 Msa1412830:intron 60.0%
TTCCCGCACCCTGCATATGC+GGG + tig0023964:1628-1647 Msa1412830:intron 60.0%
! ATGCGGGAGCTCTAGTGCAC+CGG + tig0023964:1644-1663 Msa1412830:intron 60.0%
GAAGCTCTCTGCAAGGCGTG+TGG + tig0023964:2618-2637 Msa1412830:CDS 60.0%
CGGGAAGGGGTCCCACCATT+TGG - tig0023964:1614-1633 None:intergenic 65.0%
CGCATATGCAGGGTGCGGGA+AGG - tig0023964:1629-1648 None:intergenic 65.0%
CTCCCGCATATGCAGGGTGC+GGG - tig0023964:1633-1652 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTG+CGG - tig0023964:1634-1653 None:intergenic 65.0%
! TGCGGGAGCTCTAGTGCACC+GGG + tig0023964:1645-1664 Msa1412830:intron 65.0%
TCTCTGCAAGGCGTGTGGGC+TGG + tig0023964:2623-2642 Msa1412830:CDS 65.0%
!! TGCAAGGCGTGTGGGCTGGT+CGG + tig0023964:2627-2646 Msa1412830:CDS 65.0%
!! AACGCAGCACAGAGAGCGCC+AGG - tig0023964:2722-2741 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0023964 gene 18 3162 18 ID=Msa1412830;Name=Msa1412830
tig0023964 mRNA 18 3162 18 ID=Msa1412830-mRNA-1;Parent=Msa1412830;Name=Msa1412830-mRNA-1;_AED=0.20;_eAED=0.20;_QI=316|1|1|1|0.8|0.83|6|363|181
tig0023964 exon 18 324 18 ID=Msa1412830-mRNA-1:exon:20843;Parent=Msa1412830-mRNA-1
tig0023964 exon 981 1174 981 ID=Msa1412830-mRNA-1:exon:20844;Parent=Msa1412830-mRNA-1
tig0023964 exon 1305 1416 1305 ID=Msa1412830-mRNA-1:exon:20845;Parent=Msa1412830-mRNA-1
tig0023964 exon 1947 2054 1947 ID=Msa1412830-mRNA-1:exon:20846;Parent=Msa1412830-mRNA-1
tig0023964 exon 2567 2708 2567 ID=Msa1412830-mRNA-1:exon:20847;Parent=Msa1412830-mRNA-1
tig0023964 exon 2801 3162 2801 ID=Msa1412830-mRNA-1:exon:20848;Parent=Msa1412830-mRNA-1
tig0023964 five_prime_UTR 18 324 18 ID=Msa1412830-mRNA-1:five_prime_utr;Parent=Msa1412830-mRNA-1
tig0023964 five_prime_UTR 981 989 981 ID=Msa1412830-mRNA-1:five_prime_utr;Parent=Msa1412830-mRNA-1
tig0023964 CDS 990 1174 990 ID=Msa1412830-mRNA-1:cds;Parent=Msa1412830-mRNA-1
tig0023964 CDS 1305 1416 1305 ID=Msa1412830-mRNA-1:cds;Parent=Msa1412830-mRNA-1
tig0023964 CDS 1947 2054 1947 ID=Msa1412830-mRNA-1:cds;Parent=Msa1412830-mRNA-1
tig0023964 CDS 2567 2707 2567 ID=Msa1412830-mRNA-1:cds;Parent=Msa1412830-mRNA-1
tig0023964 three_prime_UTR 2708 2708 2708 ID=Msa1412830-mRNA-1:three_prime_utr;Parent=Msa1412830-mRNA-1
tig0023964 three_prime_UTR 2801 3162 2801 ID=Msa1412830-mRNA-1:three_prime_utr;Parent=Msa1412830-mRNA-1
Gene Sequence

>Msa1412830

ATGAAGGGTTTCCTAAAACCAGTATTAGGTGGAAATATCATCGATGCTAGTTGTGGAAGTGGATTATTTTCAAGATTATTTGCAAAAAGTGGACTTTTTTCTTTGGTTGTGGCTCTGGACTACTCAGAGAATATGTTGAGGCAATGTTATGAATTTGTTCAGCAGGAAGATAACTTTCCAAAAGAGAACTTCATCTTGGTTAGAGCAGACATAGCTAGACTTCCTTTTGTTTCAAGTTCCATCGATGCTGTGCATGCAGGAGCAGCTCTTCACTGTTGGCCTTCACCATCAGCAGCTGTAGCTGAAATAAGTCGCATTTTACGACCTGGAGGTGTCTTTGTTGCAACCACCTACATACTGGATGGGCCTTTTACCGCTGTTCCGTTTTTAAGTACATTGCGTCAGAATATAAATCAAGTATCAGGGATCTATACCTTTCTCTCTGAACGTGAACTTGAAGCTCTCTGCAAGGCGTGTGGGCTGGTCGGATTTAAATGCATTAGAAATGGGCCTTTTGTGATGATTTCTGCTGCAAAGCCGAAATAA

Protein sequence

>Msa1412830

MKGFLKPVLGGNIIDASCGSGLFSRLFAKSGLFSLVVALDYSENMLRQCYEFVQQEDNFPKENFILVRADIARLPFVSSSIDAVHAGAALHCWPSPSAAVAEISRILRPGGVFVATTYILDGPFTAVPFLSTLRQNINQVSGIYTFLSERELEALCKACGLVGFKCIRNGPFVMISAAKPK*