Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706200 | XP_003630432.2 | 98.438 | 192 | 3 | 0 | 91 | 282 | 1 | 192 | 7.91e-134 | 386 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706200 | sp|Q9FNP0|VQ31_ARATH | 56.983 | 179 | 55 | 6 | 106 | 281 | 13 | 172 | 9.19e-44 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706200 | G7LGI0 | 98.438 | 192 | 3 | 0 | 91 | 282 | 1 | 192 | 3.78e-134 | 386 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022230 | Msa0706200 | 0.802062 | 6.703970e-49 | -8.615850e-47 |
| Msa0029280 | Msa0706200 | 0.807836 | 4.160565e-50 | -8.615850e-47 |
| Msa0072710 | Msa0706200 | 0.805874 | 1.081488e-49 | -8.615850e-47 |
| Msa0642150 | Msa0706200 | 0.807843 | 4.146794e-50 | -8.615850e-47 |
| Msa0660140 | Msa0706200 | 0.855067 | 8.089871e-62 | -8.615850e-47 |
| Msa0663580 | Msa0706200 | 0.800741 | 1.250246e-48 | -8.615850e-47 |
| Msa0697230 | Msa0706200 | 0.815622 | 8.414633e-52 | -8.615850e-47 |
| Msa0703620 | Msa0706200 | 0.806681 | 7.308022e-50 | -8.615850e-47 |
| Msa0706200 | Msa0880370 | 0.806485 | 8.039904e-50 | -8.615850e-47 |
| Msa0706200 | Msa0967920 | 0.811002 | 8.702125e-51 | -8.615850e-47 |
| Msa0706200 | Msa1033460 | 0.813231 | 2.842458e-51 | -8.615850e-47 |
| Msa0706200 | Msa1038040 | 0.803724 | 3.040943e-49 | -8.615850e-47 |
| Msa0706200 | Msa1073140 | 0.810360 | 1.198099e-50 | -8.615850e-47 |
| Msa0706200 | Msa1113780 | 0.804710 | 1.895645e-49 | -8.615850e-47 |
| Msa0706200 | Msa1160470 | 0.819839 | 9.407155e-53 | -8.615850e-47 |
| Msa0706200 | Msa1223600 | 0.800119 | 1.673242e-48 | -8.615850e-47 |
| Msa0706200 | Msa1251890 | 0.809964 | 1.458263e-50 | -8.615850e-47 |
| Msa0706200 | Msa1258200 | 0.808084 | 3.684122e-50 | -8.615850e-47 |
| Msa0706200 | Msa1449510 | 0.801840 | 7.445975e-49 | -8.615850e-47 |
| Msa0121080 | Msa0706200 | 0.800583 | 1.346160e-48 | -8.615850e-47 |
| Msa0206600 | Msa0706200 | 0.802870 | 4.568544e-49 | -8.615850e-47 |
| Msa0225050 | Msa0706200 | 0.825995 | 3.457204e-54 | -8.615850e-47 |
| Msa0365350 | Msa0706200 | 0.804345 | 2.258964e-49 | -8.615850e-47 |
| Msa0367310 | Msa0706200 | 0.805545 | 1.267616e-49 | -8.615850e-47 |
| Msa0423590 | Msa0706200 | 0.808563 | 2.911961e-50 | -8.615850e-47 |
| Msa0469650 | Msa0706200 | 0.817307 | 3.530071e-52 | -8.615850e-47 |
| Msa0474220 | Msa0706200 | 0.807414 | 5.114412e-50 | -8.615850e-47 |
| Msa0266120 | Msa0706200 | 0.828930 | 6.837574e-55 | -8.615850e-47 |
| Msa0304040 | Msa0706200 | 0.824002 | 1.021692e-53 | -8.615850e-47 |
| Msa0340870 | Msa0706200 | 0.801076 | 1.067804e-48 | -8.615850e-47 |
| Msa0541700 | Msa0706200 | 0.862767 | 4.014566e-64 | -8.615850e-47 |
| Msa0560010 | Msa0706200 | 0.800880 | 1.171304e-48 | -8.615850e-47 |
| Msa0562680 | Msa0706200 | 0.805527 | 1.278696e-49 | -8.615850e-47 |
| Msa0570080 | Msa0706200 | 0.827986 | 1.155076e-54 | -8.615850e-47 |
| Msa0587070 | Msa0706200 | 0.827746 | 1.319405e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706200 | MtrunA17_Chr8g0385371 | 98.438 | 192 | 3 | 0 | 91 | 282 | 1 | 192 | 7.27e-138 | 386 |
| Msa0706200 | MtrunA17_Chr4g0047141 | 34.500 | 200 | 96 | 8 | 98 | 278 | 50 | 233 | 7.88e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706200 | AT5G08480.2 | 56.983 | 179 | 55 | 6 | 106 | 281 | 13 | 172 | 9.34e-45 | 149 |
| Msa0706200 | AT5G08480.3 | 56.983 | 179 | 55 | 6 | 106 | 281 | 13 | 172 | 9.34e-45 | 149 |
| Msa0706200 | AT5G08480.1 | 47.486 | 179 | 41 | 5 | 106 | 281 | 13 | 141 | 3.90e-30 | 110 |
Find 61 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTCCATTCTAATTGTTAT+AGG | 0.174734 | 4_4:-79152008 | Msa0706200:CDS |
| ACACAAACACAGGTGCATTT+AGG | 0.187922 | 4_4:-79150197 | Msa0706200:CDS |
| TGTAGTTAACGATTGCTTTC+TGG | 0.210584 | 4_4:+79152034 | None:intergenic |
| GTTCTCTCAGTTAACTATTA+TGG | 0.217006 | 4_4:-79149893 | Msa0706200:CDS |
| TTCCTTCTTTCATGGAGTTT+TGG | 0.237618 | 4_4:+79150081 | None:intergenic |
| GGAAACAAGTTAAGCAATTC+TGG | 0.246716 | 4_4:+79149745 | None:intergenic |
| TCATGCATTTCCTTCTTTCA+TGG | 0.261349 | 4_4:+79150073 | None:intergenic |
| GGTGGTGTTCTCTTCGTAAT+AGG | 0.264699 | 4_4:+79150102 | None:intergenic |
| CATAGATTCTTTGTCCTAAC+TGG | 0.285459 | 4_4:-79152071 | Msa0706200:intron |
| GGTTTAACAATCTCAAGTTT+TGG | 0.319524 | 4_4:+79150048 | None:intergenic |
| CACAAACACAGGTGCATTTA+GGG | 0.321361 | 4_4:-79150196 | Msa0706200:CDS |
| TTTCCTTCAAGTCCTGTATC+AGG | 0.338299 | 4_4:-79149964 | Msa0706200:CDS |
| TACTACCATCAAATCATCTT+AGG | 0.354983 | 4_4:-79151873 | Msa0706200:intron |
| GAAGTAGTGCAAAGATTAAC+AGG | 0.361566 | 4_4:-79150174 | Msa0706200:CDS |
| TGTTTGTGATATTGAAGATT+TGG | 0.376002 | 4_4:+79150027 | None:intergenic |
| TAGGTGCAACCTTTGTAGTT+TGG | 0.379631 | 4_4:+79150121 | None:intergenic |
| GTGTGAACAAATGTTGTTAG+TGG | 0.401194 | 4_4:+79150216 | None:intergenic |
| GCCTACCTAAGATGATTTGA+TGG | 0.404787 | 4_4:+79151868 | None:intergenic |
| TTACATACTTCATACATATA+AGG | 0.419143 | 4_4:+79149666 | None:intergenic |
| CTTTGTTGCATTGCCTTCTG+AGG | 0.427730 | 4_4:+79150149 | None:intergenic |
| CCAGTACATGGTTCAACAAC+AGG | 0.437636 | 4_4:-79150249 | Msa0706200:CDS |
| CATACTTTCTCACATGCCTT+AGG | 0.439034 | 4_4:+79149712 | None:intergenic |
| TACAAGGTTGTGAGCCAGTT+AGG | 0.451764 | 4_4:+79152057 | None:intergenic |
| TTTGTTGCATTGCCTTCTGA+GGG | 0.457769 | 4_4:+79150150 | None:intergenic |
| AACGATTGCTTTCTGGTACA+AGG | 0.461795 | 4_4:+79152041 | None:intergenic |
| GTTTCCACTGGCATCTCCTA+AGG | 0.476906 | 4_4:-79149728 | Msa0706200:CDS |
| GAATTTCTTGACTTAGAAGA+AGG | 0.481290 | 4_4:+79149991 | None:intergenic |
| GAATCCTATAACAATTAGAA+TGG | 0.493375 | 4_4:+79152004 | None:intergenic |
| GAACTTCCACTACCTGATAC+AGG | 0.493636 | 4_4:+79149952 | None:intergenic |
| CTACCTGATACAGGACTTGA+AGG | 0.504395 | 4_4:+79149961 | None:intergenic |
| ATTGCTTAACTTGTTTCCAC+TGG | 0.509456 | 4_4:-79149740 | Msa0706200:CDS |
| GAATGAAGCAACAAGACAAA+AGG | 0.518264 | 4_4:-79152501 | Msa0706200:intron |
| TCAAGTCCTGTATCAGGTAG+TGG | 0.519505 | 4_4:-79149958 | Msa0706200:CDS |
| AACTGAGAGAACAATGTTGA+AGG | 0.523337 | 4_4:+79149904 | None:intergenic |
| GAATATAAATCTGATTGTGA+TGG | 0.525782 | 4_4:-79150286 | Msa0706200:CDS |
| AAGCCACTTGCTTTAGACCT+CGG | 0.535231 | 4_4:+79149775 | None:intergenic |
| GTTGAAGGTGTGGTAGGGCT+TGG | 0.537028 | 4_4:+79149919 | None:intergenic |
| CACCAAAACTCCATGAAAGA+AGG | 0.543366 | 4_4:-79150083 | Msa0706200:CDS |
| AATATAAATCTGATTGTGAT+GGG | 0.544660 | 4_4:-79150285 | Msa0706200:CDS |
| CTCAGAAGGCAATGCAACAA+AGG | 0.546327 | 4_4:-79150148 | Msa0706200:CDS |
| ATGGAGAAGCCACCAGTACA+TGG | 0.555074 | 4_4:-79150261 | Msa0706200:CDS |
| AACAATGTTGAAGGTGTGGT+AGG | 0.558962 | 4_4:+79149913 | None:intergenic |
| CCTGTTGTTGAACCATGTAC+TGG | 0.565708 | 4_4:+79150249 | None:intergenic |
| AAATCTGATTGTGATGGGAA+TGG | 0.567485 | 4_4:-79150280 | Msa0706200:CDS |
| AGATTAACAGGTCCCTCAGA+AGG | 0.568541 | 4_4:-79150162 | Msa0706200:CDS |
| ACAATGTTGAAGGTGTGGTA+GGG | 0.605585 | 4_4:+79149914 | None:intergenic |
| GTTGTTGAACCATGTACTGG+TGG | 0.616693 | 4_4:+79150252 | None:intergenic |
| TGGAAGATGAAAAGAAACAA+GGG | 0.617549 | 4_4:-79149873 | Msa0706200:CDS |
| TGTGAGAAAGTATGATCTTG+AGG | 0.618559 | 4_4:-79149703 | Msa0706200:exon |
| ACATTTGTTCACACAAACAC+AGG | 0.619702 | 4_4:-79150207 | Msa0706200:CDS |
| ATGGAAGATGAAAAGAAACA+AGG | 0.623994 | 4_4:-79149874 | Msa0706200:CDS |
| CTTCAATATCACAAACAACC+AGG | 0.631097 | 4_4:-79150021 | Msa0706200:CDS |
| TTTATTTGCATCCGTCTCCG+AGG | 0.631935 | 4_4:-79149792 | Msa0706200:CDS |
| AGAAAGCTATCAAAGAGAGA+CGG | 0.633848 | 4_4:-79149816 | Msa0706200:CDS |
| TCTCCGAGGTCTAAAGCAAG+TGG | 0.647173 | 4_4:-79149778 | Msa0706200:CDS |
| CTTGCTTTAGACCTCGGAGA+CGG | 0.648497 | 4_4:+79149781 | None:intergenic |
| TTAGAAGAAGGTGATGCACC+TGG | 0.665275 | 4_4:+79150003 | None:intergenic |
| AAAGGAAGACCAAACTACAA+AGG | 0.666842 | 4_4:-79150130 | Msa0706200:CDS |
| AGAGAACAATGTTGAAGGTG+TGG | 0.676742 | 4_4:+79149909 | None:intergenic |
| GAATATTTGTAGGTGAGGTG+TGG | 0.697484 | 4_4:-79150314 | Msa0706200:intron |
| CATGCCTTAGGAGATGCCAG+TGG | 0.723253 | 4_4:+79149724 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTATTAATTTATCTTAAAA+AGG | - | chr4_4:79149870-79149889 | Msa0706200:CDS | 10.0% |
| !! | AAAAAAAATATTGCAAATTA+AGG | + | chr4_4:79149906-79149925 | None:intergenic | 10.0% |
| !! | ATAAGATGAGAAAAAAAAAA+AGG | + | chr4_4:79150196-79150215 | None:intergenic | 15.0% |
| !!! | TTTTCTATGTTTCTTAATTA+TGG | - | chr4_4:79150318-79150337 | Msa0706200:intron | 15.0% |
| !!! | TTGAATTCATTTTATATTTG+TGG | - | chr4_4:79150411-79150430 | Msa0706200:intron | 15.0% |
| !! | TTTGAGAGAATATAATTTAA+CGG | - | chr4_4:79150770-79150789 | Msa0706200:intron | 15.0% |
| !! | AAACAGAAAAATAACATTAT+TGG | - | chr4_4:79150893-79150912 | Msa0706200:intron | 15.0% |
| !! | GAGAAAAAAAAAAAGGAAAA+AGG | + | chr4_4:79150189-79150208 | None:intergenic | 20.0% |
| !! | ACATAGAAAACTAAAATGAA+AGG | + | chr4_4:79150308-79150327 | None:intergenic | 20.0% |
| !! | TTTGTAATTCATAAGAGAAA+TGG | - | chr4_4:79150573-79150592 | Msa0706200:intron | 20.0% |
| !! | CTATTAAATCCTATTTAGTT+TGG | + | chr4_4:79150649-79150668 | None:intergenic | 20.0% |
| !!! | AATAATCATGTTCTAGAAAA+GGG | + | chr4_4:79151159-79151178 | None:intergenic | 20.0% |
| !!! | TAATAATCATGTTCTAGAAA+AGG | + | chr4_4:79151160-79151179 | None:intergenic | 20.0% |
| !!! | TTTCTAGAACATGATTATTA+AGG | - | chr4_4:79151160-79151179 | Msa0706200:intron | 20.0% |
| !!! | TTCTAGAACATGATTATTAA+GGG | - | chr4_4:79151161-79151180 | Msa0706200:intron | 20.0% |
| !! | ATGTCTTATCAATTTAGATT+CGG | + | chr4_4:79151249-79151268 | None:intergenic | 20.0% |
| !! | ATGTCATATCAAATAATTCA+GGG | + | chr4_4:79151273-79151292 | None:intergenic | 20.0% |
| !! | AAGATGATATTAGAGTTTAT+AGG | + | chr4_4:79151582-79151601 | None:intergenic | 20.0% |
| !! | ATAAACTCTAATATCATCTT+AGG | - | chr4_4:79151582-79151601 | Msa0706200:intron | 20.0% |
| !!! | TTCATACAAATAGCATTTTT+CGG | - | chr4_4:79151729-79151748 | Msa0706200:intron | 20.0% |
| !! | TAATCATCATGAATATTTGT+AGG | - | chr4_4:79151815-79151834 | Msa0706200:intron | 20.0% |
| !! | AATATAAATCTGATTGTGAT+GGG | - | chr4_4:79151854-79151873 | Msa0706200:intron | 20.0% |
| !! | TTACATACTTCATACATATA+AGG | + | chr4_4:79152476-79152495 | None:intergenic | 20.0% |
| ! | TTCTATTCATGAAATTCTGA+CGG | - | chr4_4:79149675-79149694 | Msa0706200:three_prime_UTR | 25.0% |
| ! | GGAAAAATTGACCATTATTA+CGG | + | chr4_4:79149701-79149720 | None:intergenic | 25.0% |
| ! | AAAGTCAACCATAAAATTAC+AGG | + | chr4_4:79149760-79149779 | None:intergenic | 25.0% |
| ! | GAGTTAAGCAAATCTTTATT+TGG | - | chr4_4:79149951-79149970 | Msa0706200:CDS | 25.0% |
| ! | ACTTCCATTCTAATTGTTAT+AGG | - | chr4_4:79150131-79150150 | Msa0706200:CDS | 25.0% |
| ! | GAATCCTATAACAATTAGAA+TGG | + | chr4_4:79150138-79150157 | None:intergenic | 25.0% |
| !!! | TCTCATCTTATTTTCTTCTT+TGG | - | chr4_4:79150205-79150224 | Msa0706200:CDS | 25.0% |
| ! | TAGGAGTAAATGAATATTGA+AGG | - | chr4_4:79150484-79150503 | Msa0706200:intron | 25.0% |
| ! | ATTTGAACCATTAAATTGAG+AGG | + | chr4_4:79150543-79150562 | None:intergenic | 25.0% |
| ! | CAGAAAAATAACATTATTGG+AGG | - | chr4_4:79150896-79150915 | Msa0706200:intron | 25.0% |
| ! | ATAACTCACTAATTTAGCAA+TGG | + | chr4_4:79150949-79150968 | None:intergenic | 25.0% |
| ! | ATAAACAGGTAATAAACAGT+TGG | - | chr4_4:79151048-79151067 | Msa0706200:intron | 25.0% |
| ! | TAAACAGGTAATAAACAGTT+GGG | - | chr4_4:79151049-79151068 | Msa0706200:intron | 25.0% |
| ! | TGTCTTATCAATTTAGATTC+GGG | + | chr4_4:79151248-79151267 | None:intergenic | 25.0% |
| ! | CATGTCATATCAAATAATTC+AGG | + | chr4_4:79151274-79151293 | None:intergenic | 25.0% |
| ! | TGCTACAATAAATCTATCTT+TGG | - | chr4_4:79151409-79151428 | Msa0706200:intron | 25.0% |
| !! | TGAAATTCTTATGTTTTGCT+TGG | - | chr4_4:79151537-79151556 | Msa0706200:intron | 25.0% |
| ! | GAATATAAATCTGATTGTGA+TGG | - | chr4_4:79151853-79151872 | Msa0706200:intron | 25.0% |
| ! | TGTTTGTGATATTGAAGATT+TGG | + | chr4_4:79152115-79152134 | None:intergenic | 25.0% |
| CTCAAACTTTGTTAGTAACT+AGG | + | chr4_4:79149722-79149741 | None:intergenic | 30.0% | |
| ! | ATTGCTTGCCTGTAATTTTA+TGG | - | chr4_4:79149749-79149768 | Msa0706200:CDS | 30.0% |
| ATCGGTAATTCACTTTCAAA+AGG | + | chr4_4:79149830-79149849 | None:intergenic | 30.0% | |
| !! | TTTTGAAAGTGAATTACCGA+TGG | - | chr4_4:79149829-79149848 | Msa0706200:CDS | 30.0% |
| TACTACCATCAAATCATCTT+AGG | - | chr4_4:79150266-79150285 | Msa0706200:CDS | 30.0% | |
| !! | TGTTTGTTTGTTGTATCATG+TGG | - | chr4_4:79150358-79150377 | Msa0706200:intron | 30.0% |
| ATTCATTTACTCCTATTGTG+CGG | + | chr4_4:79150479-79150498 | None:intergenic | 30.0% | |
| CTTCATTCCTCTCAATTTAA+TGG | - | chr4_4:79150533-79150552 | Msa0706200:intron | 30.0% | |
| GTAATTCATAAGAGAAATGG+TGG | - | chr4_4:79150576-79150595 | Msa0706200:intron | 30.0% | |
| ! | TTTAATAGCTTTGCAATGTG+CGG | - | chr4_4:79150661-79150680 | Msa0706200:intron | 30.0% |
| AGAAATAGAAAAGAACAGAC+AGG | - | chr4_4:79150993-79151012 | Msa0706200:intron | 30.0% | |
| GAGTTGCAAAATCTAATCTA+AGG | - | chr4_4:79151085-79151104 | Msa0706200:intron | 30.0% | |
| TGGAGCTATGTATATAATCA+CGG | + | chr4_4:79151215-79151234 | None:intergenic | 30.0% | |
| TGATATGACATGCTTTCAAT+AGG | - | chr4_4:79151282-79151301 | Msa0706200:intron | 30.0% | |
| GATATGACATGCTTTCAATA+GGG | - | chr4_4:79151283-79151302 | Msa0706200:intron | 30.0% | |
| ! | TTCACATTCTAAAGAACATG+TGG | - | chr4_4:79151322-79151341 | Msa0706200:intron | 30.0% |
| ! | TCACATTCTAAAGAACATGT+GGG | - | chr4_4:79151323-79151342 | Msa0706200:intron | 30.0% |
| AAGAATCTAGAGATTAATGC+AGG | + | chr4_4:79151388-79151407 | None:intergenic | 30.0% | |
| TGTGAAGAGAAACAAAAAGA+AGG | + | chr4_4:79151457-79151476 | None:intergenic | 30.0% | |
| !! | CTTTTTGTTTCTCTTCACAT+AGG | - | chr4_4:79151458-79151477 | Msa0706200:intron | 30.0% |
| TTTGCAATCAACATAAGAAG+AGG | + | chr4_4:79151508-79151527 | None:intergenic | 30.0% | |
| TTTCATCTTCAAGTATGTCA+TGG | - | chr4_4:79151752-79151771 | Msa0706200:intron | 30.0% | |
| ATCATGAATATTTGTAGGTG+AGG | - | chr4_4:79151820-79151839 | Msa0706200:intron | 30.0% | |
| ! | GGTTTAACAATCTCAAGTTT+TGG | + | chr4_4:79152094-79152113 | None:intergenic | 30.0% |
| GAATTTCTTGACTTAGAAGA+AGG | + | chr4_4:79152151-79152170 | None:intergenic | 30.0% | |
| GTTCTCTCAGTTAACTATTA+TGG | - | chr4_4:79152246-79152265 | Msa0706200:intron | 30.0% | |
| ATGGAAGATGAAAAGAAACA+AGG | - | chr4_4:79152265-79152284 | Msa0706200:intron | 30.0% | |
| TGGAAGATGAAAAGAAACAA+GGG | - | chr4_4:79152266-79152285 | Msa0706200:intron | 30.0% | |
| TCTATCTTGAACAACTCCAT+CGG | + | chr4_4:79149848-79149867 | None:intergenic | 35.0% | |
| ATGGAGTTGTTCAAGATAGA+CGG | - | chr4_4:79149848-79149867 | Msa0706200:CDS | 35.0% | |
| ! | AATCTTTATTTGGCAGTTGC+TGG | - | chr4_4:79149961-79149980 | Msa0706200:CDS | 35.0% |
| CATCAACTACCTGTTGTAAA+GGG | + | chr4_4:79150012-79150031 | None:intergenic | 35.0% | |
| ACATCAACTACCTGTTGTAA+AGG | + | chr4_4:79150013-79150032 | None:intergenic | 35.0% | |
| ! | TTTACAACAGGTAGTTGATG+TGG | - | chr4_4:79150012-79150031 | Msa0706200:CDS | 35.0% |
| !!! | ATGGTTAGACTGCTTTTTTG+AGG | - | chr4_4:79150044-79150063 | Msa0706200:CDS | 35.0% |
| CATAGATTCTTTGTCCTAAC+TGG | - | chr4_4:79150068-79150087 | Msa0706200:CDS | 35.0% | |
| TGTAGTTAACGATTGCTTTC+TGG | + | chr4_4:79150108-79150127 | None:intergenic | 35.0% | |
| ACCATCAAATCATCTTAGGT+AGG | - | chr4_4:79150270-79150289 | Msa0706200:CDS | 35.0% | |
| !! | GTTTGTTGTATCATGTGGTT+TGG | - | chr4_4:79150363-79150382 | Msa0706200:intron | 35.0% |
| AGTCAAGCAATCTCTAATCA+TGG | + | chr4_4:79150626-79150645 | None:intergenic | 35.0% | |
| TGCTTGACTCCAAACTAAAT+AGG | - | chr4_4:79150637-79150656 | Msa0706200:intron | 35.0% | |
| ! | TAACATGCATTTTCTCAACC+CGG | - | chr4_4:79150692-79150711 | Msa0706200:intron | 35.0% |
| TCATACAACAATAGCAGTAG+AGG | - | chr4_4:79150810-79150829 | Msa0706200:intron | 35.0% | |
| AACAGACAAACGGTTAACTT+TGG | + | chr4_4:79150924-79150943 | None:intergenic | 35.0% | |
| AGCAATGGATAACAGACAAA+CGG | + | chr4_4:79150934-79150953 | None:intergenic | 35.0% | |
| CTGTTTATCTTTGACTCTTG+AGG | + | chr4_4:79151036-79151055 | None:intergenic | 35.0% | |
| CTCAAGAGTCAAAGATAAAC+AGG | - | chr4_4:79151034-79151053 | Msa0706200:intron | 35.0% | |
| !! | ATCATGTTCTAGAAAAGGGT+AGG | + | chr4_4:79151155-79151174 | None:intergenic | 35.0% |
| GGAGCTATGTATATAATCAC+GGG | + | chr4_4:79151214-79151233 | None:intergenic | 35.0% | |
| !!! | TAGATTCGGGAAGAGTTTTT+TGG | + | chr4_4:79151235-79151254 | None:intergenic | 35.0% |
| ! | CACATTCTAAAGAACATGTG+GGG | - | chr4_4:79151324-79151343 | Msa0706200:intron | 35.0% |
| CTTCACAAAATCAGCTTGTA+AGG | - | chr4_4:79151622-79151641 | Msa0706200:intron | 35.0% | |
| ! | AAATCTGATTGTGATGGGAA+TGG | - | chr4_4:79151859-79151878 | Msa0706200:intron | 35.0% |
| GTGTGAACAAATGTTGTTAG+TGG | + | chr4_4:79151926-79151945 | None:intergenic | 35.0% | |
| ACATTTGTTCACACAAACAC+AGG | - | chr4_4:79151932-79151951 | Msa0706200:CDS | 35.0% | |
| GAAGTAGTGCAAAGATTAAC+AGG | - | chr4_4:79151965-79151984 | Msa0706200:CDS | 35.0% | |
| AAAGGAAGACCAAACTACAA+AGG | - | chr4_4:79152009-79152028 | Msa0706200:CDS | 35.0% | |
| ! | TTCCTTCTTTCATGGAGTTT+TGG | + | chr4_4:79152061-79152080 | None:intergenic | 35.0% |
| TCATGCATTTCCTTCTTTCA+TGG | + | chr4_4:79152069-79152088 | None:intergenic | 35.0% | |
| CTTCAATATCACAAACAACC+AGG | - | chr4_4:79152118-79152137 | Msa0706200:intron | 35.0% | |
| AACTGAGAGAACAATGTTGA+AGG | + | chr4_4:79152238-79152257 | None:intergenic | 35.0% | |
| AGAAAGCTATCAAAGAGAGA+CGG | - | chr4_4:79152323-79152342 | Msa0706200:intron | 35.0% | |
| GGAAACAAGTTAAGCAATTC+TGG | + | chr4_4:79152397-79152416 | None:intergenic | 35.0% | |
| !! | ATTGCTTAACTTGTTTCCAC+TGG | - | chr4_4:79152399-79152418 | Msa0706200:intron | 35.0% |
| ! | TGTGAGAAAGTATGATCTTG+AGG | - | chr4_4:79152436-79152455 | Msa0706200:intron | 35.0% |
| AATTCTGACGGCCGTAATAA+TGG | - | chr4_4:79149687-79149706 | Msa0706200:three_prime_UTR | 40.0% | |
| TTTATTTGGCAGTTGCTGGA+AGG | - | chr4_4:79149965-79149984 | Msa0706200:CDS | 40.0% | |
| GTTGATGTGGCAAAGCTAAA+TGG | - | chr4_4:79150025-79150044 | Msa0706200:CDS | 40.0% | |
| ! | AACGATTGCTTTCTGGTACA+AGG | + | chr4_4:79150101-79150120 | None:intergenic | 40.0% |
| GCCTACCTAAGATGATTTGA+TGG | + | chr4_4:79150274-79150293 | None:intergenic | 40.0% | |
| ! | CATTTTCTCAACCCGGAATT+CGG | - | chr4_4:79150699-79150718 | Msa0706200:intron | 40.0% |
| ACCATAGAGAATCCGAATTC+CGG | + | chr4_4:79150714-79150733 | None:intergenic | 40.0% | |
| AGGATCCAATTTCCTCAAGT+TGG | - | chr4_4:79150830-79150849 | Msa0706200:intron | 40.0% | |
| GGATCCAATTTCCTCAAGTT+GGG | - | chr4_4:79150831-79150850 | Msa0706200:intron | 40.0% | |
| TTATATGTCGTCCCAACTTG+AGG | + | chr4_4:79150845-79150864 | None:intergenic | 40.0% | |
| GACTCTTGAGGTCTTAGAAT+TGG | + | chr4_4:79151024-79151043 | None:intergenic | 40.0% | |
| CAAAATCAGCTTGTAAGGTG+AGG | - | chr4_4:79151627-79151646 | Msa0706200:intron | 40.0% | |
| GAATATTTGTAGGTGAGGTG+TGG | - | chr4_4:79151825-79151844 | Msa0706200:intron | 40.0% | |
| ACACAAACACAGGTGCATTT+AGG | - | chr4_4:79151942-79151961 | Msa0706200:CDS | 40.0% | |
| CACAAACACAGGTGCATTTA+GGG | - | chr4_4:79151943-79151962 | Msa0706200:CDS | 40.0% | |
| TTTGTTGCATTGCCTTCTGA+GGG | + | chr4_4:79151992-79152011 | None:intergenic | 40.0% | |
| TAGGTGCAACCTTTGTAGTT+TGG | + | chr4_4:79152021-79152040 | None:intergenic | 40.0% | |
| !! | CTTCTTTCATGGAGTTTTGG+TGG | + | chr4_4:79152058-79152077 | None:intergenic | 40.0% |
| CACCAAAACTCCATGAAAGA+AGG | - | chr4_4:79152056-79152075 | Msa0706200:CDS | 40.0% | |
| TTTCCTTCAAGTCCTGTATC+AGG | - | chr4_4:79152175-79152194 | Msa0706200:intron | 40.0% | |
| ! | ACAATGTTGAAGGTGTGGTA+GGG | + | chr4_4:79152228-79152247 | None:intergenic | 40.0% |
| ! | AACAATGTTGAAGGTGTGGT+AGG | + | chr4_4:79152229-79152248 | None:intergenic | 40.0% |
| AGAGAACAATGTTGAAGGTG+TGG | + | chr4_4:79152233-79152252 | None:intergenic | 40.0% | |
| CATACTTTCTCACATGCCTT+AGG | + | chr4_4:79152430-79152449 | None:intergenic | 40.0% | |
| CTACCTGTTGTAAAGGGCAA+TGG | + | chr4_4:79150006-79150025 | None:intergenic | 45.0% | |
| TACAAGGTTGTGAGCCAGTT+AGG | + | chr4_4:79150085-79150104 | None:intergenic | 45.0% | |
| TTGTGCGGTATCAAGGGAAA+GGG | + | chr4_4:79150464-79150483 | None:intergenic | 45.0% | |
| ATTGTGCGGTATCAAGGGAA+AGG | + | chr4_4:79150465-79150484 | None:intergenic | 45.0% | |
| TTCCCTTGATACCGCACAAT+AGG | - | chr4_4:79150465-79150484 | Msa0706200:intron | 45.0% | |
| CTCCTATTGTGCGGTATCAA+GGG | + | chr4_4:79150470-79150489 | None:intergenic | 45.0% | |
| ACTCCTATTGTGCGGTATCA+AGG | + | chr4_4:79150471-79150490 | None:intergenic | 45.0% | |
| CCATAGAGAATCCGAATTCC+GGG | + | chr4_4:79150713-79150732 | None:intergenic | 45.0% | |
| TCGTCCCAACTTGAGGAAAT+TGG | + | chr4_4:79150838-79150857 | None:intergenic | 45.0% | |
| ! | AAGGGTAGGCATTTGTTGAC+TGG | + | chr4_4:79151141-79151160 | None:intergenic | 45.0% |
| TCTCTTCACATAGGACTCCT+TGG | - | chr4_4:79151467-79151486 | Msa0706200:intron | 45.0% | |
| !! | GGAGAAAAAGCACTACACCA+AGG | + | chr4_4:79151487-79151506 | None:intergenic | 45.0% |
| GTTGTTGAACCATGTACTGG+TGG | + | chr4_4:79151890-79151909 | None:intergenic | 45.0% | |
| CCTGTTGTTGAACCATGTAC+TGG | + | chr4_4:79151893-79151912 | None:intergenic | 45.0% | |
| CCAGTACATGGTTCAACAAC+AGG | - | chr4_4:79151890-79151909 | Msa0706200:CDS | 45.0% | |
| AGATTAACAGGTCCCTCAGA+AGG | - | chr4_4:79151977-79151996 | Msa0706200:CDS | 45.0% | |
| CTTTGTTGCATTGCCTTCTG+AGG | + | chr4_4:79151993-79152012 | None:intergenic | 45.0% | |
| CTCAGAAGGCAATGCAACAA+AGG | - | chr4_4:79151991-79152010 | Msa0706200:CDS | 45.0% | |
| GGTGGTGTTCTCTTCGTAAT+AGG | + | chr4_4:79152040-79152059 | None:intergenic | 45.0% | |
| TTAGAAGAAGGTGATGCACC+TGG | + | chr4_4:79152139-79152158 | None:intergenic | 45.0% | |
| CTACCTGATACAGGACTTGA+AGG | + | chr4_4:79152181-79152200 | None:intergenic | 45.0% | |
| TCAAGTCCTGTATCAGGTAG+TGG | - | chr4_4:79152181-79152200 | Msa0706200:intron | 45.0% | |
| GAACTTCCACTACCTGATAC+AGG | + | chr4_4:79152190-79152209 | None:intergenic | 45.0% | |
| TTTATTTGCATCCGTCTCCG+AGG | - | chr4_4:79152347-79152366 | Msa0706200:intron | 45.0% | |
| ! | AAGCCACTTGCTTTAGACCT+CGG | + | chr4_4:79152367-79152386 | None:intergenic | 45.0% |
| !! | TTATTAATTTATCTTAAAAA+GGG | - | chr4_4:79149871-79149890 | Msa0706200:CDS | 5.0% |
| !! | GCTGGAAGGAAAGTGTTGTG+TGG | - | chr4_4:79149979-79149998 | Msa0706200:CDS | 50.0% |
| GGTCCATTGCCCTTTACAAC+AGG | - | chr4_4:79150000-79150019 | Msa0706200:CDS | 50.0% | |
| CCCGGAATTCGGATTCTCTA+TGG | - | chr4_4:79150710-79150729 | Msa0706200:intron | 50.0% | |
| ATGGAGAAGCCACCAGTACA+TGG | - | chr4_4:79151878-79151897 | Msa0706200:CDS | 50.0% | |
| ! | CTTGCTTTAGACCTCGGAGA+CGG | + | chr4_4:79152361-79152380 | None:intergenic | 50.0% |
| ! | TCTCCGAGGTCTAAAGCAAG+TGG | - | chr4_4:79152361-79152380 | Msa0706200:intron | 50.0% |
| GTTTCCACTGGCATCTCCTA+AGG | - | chr4_4:79152411-79152430 | Msa0706200:intron | 50.0% | |
| ! | GTTGAAGGTGTGGTAGGGCT+TGG | + | chr4_4:79152223-79152242 | None:intergenic | 55.0% |
| CATGCCTTAGGAGATGCCAG+TGG | + | chr4_4:79152418-79152437 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 79149640 | 79152521 | 79149640 | ID=Msa0706200;Name=Msa0706200 |
| chr4_4 | mRNA | 79149640 | 79152521 | 79149640 | ID=Msa0706200-mRNA-1;Parent=Msa0706200;Name=Msa0706200-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.5|0.33|0.66|0.5|0.33|3|71|282 |
| chr4_4 | exon | 79149640 | 79150324 | 79149640 | ID=Msa0706200-mRNA-1:exon:25399;Parent=Msa0706200-mRNA-1 |
| chr4_4 | exon | 79151874 | 79152088 | 79151874 | ID=Msa0706200-mRNA-1:exon:25398;Parent=Msa0706200-mRNA-1 |
| chr4_4 | exon | 79152502 | 79152521 | 79152502 | ID=Msa0706200-mRNA-1:exon:25397;Parent=Msa0706200-mRNA-1 |
| chr4_4 | CDS | 79152502 | 79152521 | 79152502 | ID=Msa0706200-mRNA-1:cds;Parent=Msa0706200-mRNA-1 |
| chr4_4 | CDS | 79151874 | 79152088 | 79151874 | ID=Msa0706200-mRNA-1:cds;Parent=Msa0706200-mRNA-1 |
| chr4_4 | CDS | 79149711 | 79150324 | 79149711 | ID=Msa0706200-mRNA-1:cds;Parent=Msa0706200-mRNA-1 |
| chr4_4 | three_prime_UTR | 79149640 | 79149710 | 79149640 | ID=Msa0706200-mRNA-1:three_prime_utr;Parent=Msa0706200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
