AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0423590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0423590 MtrunA17_Chr3g0125291 84.862 218 15 3 1 204 1 214 1.93e-133 373
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0423590 AT4G37925.1 56.731 208 78 4 1 198 1 206 9.10e-79 235

Find 47 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATCAAAAGCACTGGTTTC+TGG 0.141947 3_2:-73530039 None:intergenic
CTTGGTCTATTCTTACTTTC+AGG 0.183071 3_2:+73530134 Msa0423590:CDS
CCAAATTATCCATACAAAAT+TGG 0.229236 3_2:+73529750 Msa0423590:CDS
CATCAGTAGGATCAAGAATA+AGG 0.246691 3_2:-73530083 None:intergenic
CAAGGCATGACCAGGGAATA+TGG 0.310643 3_2:+73529958 Msa0423590:intron
TAGACCAAGTTGCAAGTATC+AGG 0.336990 3_2:-73530120 None:intergenic
ACCTGAGGTTCAACTGGCCT+TGG 0.343629 3_2:-73529922 None:intergenic
TCTCAAGTACTAGCATCTTC+AGG 0.350319 3_2:-73530903 None:intergenic
GAATACACACTTCGGTTGAT+TGG 0.380394 3_2:+73530753 Msa0423590:CDS
TTCTTACTTTCAGGAGCTTG+TGG 0.404103 3_2:+73530143 Msa0423590:CDS
ACAATCACCTGAGGTTCAAC+TGG 0.408756 3_2:-73529928 None:intergenic
TCAACAACAATCTGATGTTA+AGG 0.415802 3_2:+73529826 Msa0423590:CDS
ATAAGAAAGTTGTTATATGA+TGG 0.433915 3_2:+73530795 Msa0423590:CDS
CGAAGTGTGTATTCATTCAA+TGG 0.452108 3_2:-73530744 None:intergenic
CTTATATTGAGCACTTGCAT+TGG 0.457552 3_2:-73531094 None:intergenic
GGCCACAAGTTGTTCCTACA+TGG 0.484273 3_2:+73529721 Msa0423590:CDS
CTGAGTTTGATCAAAAGCAC+TGG 0.490193 3_2:-73530046 None:intergenic
TAAGAAAGTTGTTATATGAT+GGG 0.494772 3_2:+73530796 Msa0423590:CDS
ATCAGTAGGATCAAGAATAA+GGG 0.496505 3_2:-73530082 None:intergenic
AATCAACAAATTAATCCAAA+AGG 0.501012 3_2:+73529892 Msa0423590:CDS
ACCAAGGCCAGTTGAACCTC+AGG 0.504576 3_2:+73529921 Msa0423590:CDS
TCAAGTATAATATGAATGCA+AGG 0.530324 3_2:+73530823 Msa0423590:CDS
GAAACAGACGGTGTGAAAGT+AGG 0.533008 3_2:+73529848 Msa0423590:CDS
TGCAAGTGCTCAATATAAGC+AGG 0.536972 3_2:+73531098 Msa0423590:three_prime_UTR
AGGGTTCTGAATTTCAGCAT+GGG 0.568039 3_2:+73530843 Msa0423590:CDS
CAAGTATAATATGAATGCAA+GGG 0.571561 3_2:+73530824 Msa0423590:CDS
ATCCTACTGATGAGTTTGTG+TGG 0.588183 3_2:+73530094 Msa0423590:CDS
TTATCCATACAAAATTGGAC+AGG 0.589821 3_2:+73529755 Msa0423590:CDS
AAGGGTTCTGAATTTCAGCA+TGG 0.591866 3_2:+73530842 Msa0423590:CDS
AAGAAAGTTGTTATATGATG+GGG 0.592164 3_2:+73530797 Msa0423590:CDS
GAATCCTGATACTTGCAACT+TGG 0.593694 3_2:+73530116 Msa0423590:CDS
GGAGCTTGTGGATCACTATG+AGG 0.594812 3_2:+73530155 Msa0423590:CDS
TCCATACAAAATTGGACAGG+AGG 0.595865 3_2:+73529758 Msa0423590:CDS
AAGTACTAGCATCTTCAGGT+TGG 0.600680 3_2:-73530899 None:intergenic
CATTGAATGAATACACACTT+CGG 0.613957 3_2:+73530745 Msa0423590:CDS
GGGTTCTGAATTTCAGCATG+GGG 0.628137 3_2:+73530844 Msa0423590:CDS
TTCCACACAAACTCATCAGT+AGG 0.644633 3_2:-73530096 None:intergenic
AACCATGTAGGAACAACTTG+TGG 0.645922 3_2:-73529723 None:intergenic
TTGTTGTTGAACATGATCCG+TGG 0.660958 3_2:-73530870 None:intergenic
ATCCAAAAGGAACAAAACCA+AGG 0.667834 3_2:+73529905 Msa0423590:CDS
TAATTTGGTAGAAACCATGT+AGG 0.670055 3_2:-73529735 None:intergenic
ATTTCAGCATGGGGAAACCA+CGG 0.674315 3_2:+73530853 Msa0423590:CDS
ATAGATCCTCACATGTCGCG+TGG 0.684738 3_2:-73530001 None:intergenic
TCTGATGTTAAGGAAACAGA+CGG 0.690604 3_2:+73529836 Msa0423590:CDS
CCAGGGAATATGGAGGACAG+TGG 0.721629 3_2:+73529968 Msa0423590:intron
GCTGTGCCACGCGACATGTG+AGG 0.722585 3_2:+73529995 Msa0423590:CDS
GGCATGACCAGGGAATATGG+AGG 0.766490 3_2:+73529961 Msa0423590:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAATAAATATCAATACA+AGG + chr3_2:73530279-73530298 Msa0423590:intron 15.0%
!! CAAAAATAAATATCAATACA+AGG + chr3_2:73530279-73530298 Msa0423590:intron 15.0%
!! AATCAACAAATTAATCCAAA+AGG + chr3_2:73529892-73529911 Msa0423590:CDS 20.0%
!! TGTGAATTTGATTATGTTTA+AGG - chr3_2:73530187-73530206 None:intergenic 20.0%
!! ATAGTCTATGCTTAAATTTA+AGG + chr3_2:73530309-73530328 Msa0423590:intron 20.0%
!! ATACAATTCTAACACTTAAT+TGG - chr3_2:73530606-73530625 None:intergenic 20.0%
!!! CTTTTTGATAATTGAAAACA+GGG + chr3_2:73530717-73530736 Msa0423590:intron 20.0%
!! ATAAGAAAGTTGTTATATGA+TGG + chr3_2:73530795-73530814 Msa0423590:CDS 20.0%
!! TAAGAAAGTTGTTATATGAT+GGG + chr3_2:73530796-73530815 Msa0423590:CDS 20.0%
!! AATCAACAAATTAATCCAAA+AGG + chr3_2:73529892-73529911 Msa0423590:CDS 20.0%
!! TGTGAATTTGATTATGTTTA+AGG - chr3_2:73530187-73530206 None:intergenic 20.0%
!! ATAGTCTATGCTTAAATTTA+AGG + chr3_2:73530309-73530328 Msa0423590:intron 20.0%
!! ATACAATTCTAACACTTAAT+TGG - chr3_2:73530606-73530625 None:intergenic 20.0%
!!! CTTTTTGATAATTGAAAACA+GGG + chr3_2:73530717-73530736 Msa0423590:intron 20.0%
!! ATAAGAAAGTTGTTATATGA+TGG + chr3_2:73530795-73530814 Msa0423590:CDS 20.0%
!! TAAGAAAGTTGTTATATGAT+GGG + chr3_2:73530796-73530815 Msa0423590:CDS 20.0%
!! CCAATTTTGTATGGATAATT+TGG - chr3_2:73529753-73529772 None:intergenic 25.0%
! CCAAATTATCCATACAAAAT+TGG + chr3_2:73529750-73529769 Msa0423590:CDS 25.0%
!!! GGATTAATTTGTTGATTTTG+TGG - chr3_2:73529889-73529908 None:intergenic 25.0%
! CTAGTTAAAGGTAAATTGTT+CGG + chr3_2:73530369-73530388 Msa0423590:intron 25.0%
!!! GTATCATGATTTGTTAAATC+TGG + chr3_2:73530622-73530641 Msa0423590:intron 25.0%
!! CCTGTTTTCAATTATCAAAA+AGG - chr3_2:73530719-73530738 None:intergenic 25.0%
!!! CCTTTTTGATAATTGAAAAC+AGG + chr3_2:73530716-73530735 Msa0423590:intron 25.0%
! AAGAAAGTTGTTATATGATG+GGG + chr3_2:73530797-73530816 Msa0423590:CDS 25.0%
! TCAAGTATAATATGAATGCA+AGG + chr3_2:73530823-73530842 Msa0423590:CDS 25.0%
! CAAGTATAATATGAATGCAA+GGG + chr3_2:73530824-73530843 Msa0423590:CDS 25.0%
!!! CAAGAGATTTTTTTCTATCT+TGG - chr3_2:73531040-73531059 None:intergenic 25.0%
!! CCAATTTTGTATGGATAATT+TGG - chr3_2:73529753-73529772 None:intergenic 25.0%
! CCAAATTATCCATACAAAAT+TGG + chr3_2:73529750-73529769 Msa0423590:CDS 25.0%
!!! GGATTAATTTGTTGATTTTG+TGG - chr3_2:73529889-73529908 None:intergenic 25.0%
! CTAGTTAAAGGTAAATTGTT+CGG + chr3_2:73530369-73530388 Msa0423590:intron 25.0%
!!! GTATCATGATTTGTTAAATC+TGG + chr3_2:73530622-73530641 Msa0423590:intron 25.0%
!! CCTGTTTTCAATTATCAAAA+AGG - chr3_2:73530719-73530738 None:intergenic 25.0%
!!! CCTTTTTGATAATTGAAAAC+AGG + chr3_2:73530716-73530735 Msa0423590:intron 25.0%
! AAGAAAGTTGTTATATGATG+GGG + chr3_2:73530797-73530816 Msa0423590:CDS 25.0%
! TCAAGTATAATATGAATGCA+AGG + chr3_2:73530823-73530842 Msa0423590:CDS 25.0%
! CAAGTATAATATGAATGCAA+GGG + chr3_2:73530824-73530843 Msa0423590:CDS 25.0%
!!! CAAGAGATTTTTTTCTATCT+TGG - chr3_2:73531040-73531059 None:intergenic 25.0%
TAATTTGGTAGAAACCATGT+AGG - chr3_2:73529738-73529757 None:intergenic 30.0%
TTATCCATACAAAATTGGAC+AGG + chr3_2:73529755-73529774 Msa0423590:CDS 30.0%
TGTTGAGCTGATATGAAAAA+TGG - chr3_2:73529812-73529831 None:intergenic 30.0%
TCAACAACAATCTGATGTTA+AGG + chr3_2:73529826-73529845 Msa0423590:CDS 30.0%
ATCAGTAGGATCAAGAATAA+GGG - chr3_2:73530085-73530104 None:intergenic 30.0%
!! ACATGCTAGTCTTGAATTAT+AGG - chr3_2:73530213-73530232 None:intergenic 30.0%
ATAATTCAAGACTAGCATGT+AGG + chr3_2:73530213-73530232 Msa0423590:intron 30.0%
AGTTGTTAATCCAAAAAGCT+AGG + chr3_2:73530536-73530555 Msa0423590:intron 30.0%
GTAGCAGAATTAACACAAAA+TGG - chr3_2:73530660-73530679 None:intergenic 30.0%
CATTGAATGAATACACACTT+CGG + chr3_2:73530745-73530764 Msa0423590:CDS 30.0%
!!! AATGATTTGCTCACTTTTCT+TGG - chr3_2:73530947-73530966 None:intergenic 30.0%
!!! TCCAAGATAGCATGTTTTTT+GGG + chr3_2:73531060-73531079 Msa0423590:three_prime_UTR 30.0%
TAATTTGGTAGAAACCATGT+AGG - chr3_2:73529738-73529757 None:intergenic 30.0%
TTATCCATACAAAATTGGAC+AGG + chr3_2:73529755-73529774 Msa0423590:CDS 30.0%
TGTTGAGCTGATATGAAAAA+TGG - chr3_2:73529812-73529831 None:intergenic 30.0%
TCAACAACAATCTGATGTTA+AGG + chr3_2:73529826-73529845 Msa0423590:CDS 30.0%
ATCAGTAGGATCAAGAATAA+GGG - chr3_2:73530085-73530104 None:intergenic 30.0%
!! ACATGCTAGTCTTGAATTAT+AGG - chr3_2:73530213-73530232 None:intergenic 30.0%
ATAATTCAAGACTAGCATGT+AGG + chr3_2:73530213-73530232 Msa0423590:intron 30.0%
AGTTGTTAATCCAAAAAGCT+AGG + chr3_2:73530536-73530555 Msa0423590:intron 30.0%
GTAGCAGAATTAACACAAAA+TGG - chr3_2:73530660-73530679 None:intergenic 30.0%
CATTGAATGAATACACACTT+CGG + chr3_2:73530745-73530764 Msa0423590:CDS 30.0%
!!! AATGATTTGCTCACTTTTCT+TGG - chr3_2:73530947-73530966 None:intergenic 30.0%
!!! TCCAAGATAGCATGTTTTTT+GGG + chr3_2:73531060-73531079 Msa0423590:three_prime_UTR 30.0%
TCTGATGTTAAGGAAACAGA+CGG + chr3_2:73529836-73529855 Msa0423590:CDS 35.0%
ATCCAAAAGGAACAAAACCA+AGG + chr3_2:73529905-73529924 Msa0423590:CDS 35.0%
! TGATCTTTTACAATCACCTG+AGG - chr3_2:73529940-73529959 None:intergenic 35.0%
CAGGTGATTGTAAAAGATCA+AGG + chr3_2:73529940-73529959 Msa0423590:intron 35.0%
! TGCTTTTGATCAAACTCAGA+TGG + chr3_2:73530050-73530069 Msa0423590:CDS 35.0%
CATCAGTAGGATCAAGAATA+AGG - chr3_2:73530086-73530105 None:intergenic 35.0%
CTTGGTCTATTCTTACTTTC+AGG + chr3_2:73530134-73530153 Msa0423590:CDS 35.0%
AAAATGATTGAGAGCTCAAG+TGG + chr3_2:73530336-73530355 Msa0423590:intron 35.0%
!! GGTTGATGAACTCTAGTTAA+AGG + chr3_2:73530357-73530376 Msa0423590:intron 35.0%
TGTCTGGAAGGTAAATAAAG+TGG - chr3_2:73530439-73530458 None:intergenic 35.0%
TAATCCAAAAAGCTAGGAGA+AGG + chr3_2:73530542-73530561 Msa0423590:intron 35.0%
!! TTTTCCTTCTCCTAGCTTTT+TGG - chr3_2:73530549-73530568 None:intergenic 35.0%
!! CAAGCTTTTTCTCTCTACTA+TGG + chr3_2:73530679-73530698 Msa0423590:intron 35.0%
CGAAGTGTGTATTCATTCAA+TGG - chr3_2:73530747-73530766 None:intergenic 35.0%
!!! GTCCAAGATAGCATGTTTTT+TGG + chr3_2:73531059-73531078 Msa0423590:three_prime_UTR 35.0%
!!! CCAAGATAGCATGTTTTTTG+GGG + chr3_2:73531061-73531080 Msa0423590:three_prime_UTR 35.0%
CTTATATTGAGCACTTGCAT+TGG - chr3_2:73531097-73531116 None:intergenic 35.0%
TCTGATGTTAAGGAAACAGA+CGG + chr3_2:73529836-73529855 Msa0423590:CDS 35.0%
ATCCAAAAGGAACAAAACCA+AGG + chr3_2:73529905-73529924 Msa0423590:CDS 35.0%
! TGATCTTTTACAATCACCTG+AGG - chr3_2:73529940-73529959 None:intergenic 35.0%
CAGGTGATTGTAAAAGATCA+AGG + chr3_2:73529940-73529959 Msa0423590:intron 35.0%
! TGCTTTTGATCAAACTCAGA+TGG + chr3_2:73530050-73530069 Msa0423590:CDS 35.0%
CATCAGTAGGATCAAGAATA+AGG - chr3_2:73530086-73530105 None:intergenic 35.0%
CTTGGTCTATTCTTACTTTC+AGG + chr3_2:73530134-73530153 Msa0423590:CDS 35.0%
AAAATGATTGAGAGCTCAAG+TGG + chr3_2:73530336-73530355 Msa0423590:intron 35.0%
!! GGTTGATGAACTCTAGTTAA+AGG + chr3_2:73530357-73530376 Msa0423590:intron 35.0%
TGTCTGGAAGGTAAATAAAG+TGG - chr3_2:73530439-73530458 None:intergenic 35.0%
TAATCCAAAAAGCTAGGAGA+AGG + chr3_2:73530542-73530561 Msa0423590:intron 35.0%
!! TTTTCCTTCTCCTAGCTTTT+TGG - chr3_2:73530549-73530568 None:intergenic 35.0%
!! CAAGCTTTTTCTCTCTACTA+TGG + chr3_2:73530679-73530698 Msa0423590:intron 35.0%
CGAAGTGTGTATTCATTCAA+TGG - chr3_2:73530747-73530766 None:intergenic 35.0%
!!! GTCCAAGATAGCATGTTTTT+TGG + chr3_2:73531059-73531078 Msa0423590:three_prime_UTR 35.0%
!!! CCAAGATAGCATGTTTTTTG+GGG + chr3_2:73531061-73531080 Msa0423590:three_prime_UTR 35.0%
CTTATATTGAGCACTTGCAT+TGG - chr3_2:73531097-73531116 None:intergenic 35.0%
AACCATGTAGGAACAACTTG+TGG - chr3_2:73529726-73529745 None:intergenic 40.0%
TCCATACAAAATTGGACAGG+AGG + chr3_2:73529758-73529777 Msa0423590:CDS 40.0%
! TCCTCCTGTCCAATTTTGTA+TGG - chr3_2:73529762-73529781 None:intergenic 40.0%
TAAAAGATCAAGGCATGACC+AGG + chr3_2:73529950-73529969 Msa0423590:intron 40.0%
AAAAGATCAAGGCATGACCA+GGG + chr3_2:73529951-73529970 Msa0423590:intron 40.0%
!! TGATCAAAAGCACTGGTTTC+TGG - chr3_2:73530042-73530061 None:intergenic 40.0%
! CTGAGTTTGATCAAAAGCAC+TGG - chr3_2:73530049-73530068 None:intergenic 40.0%
ATCCTACTGATGAGTTTGTG+TGG + chr3_2:73530094-73530113 Msa0423590:CDS 40.0%
TTCCACACAAACTCATCAGT+AGG - chr3_2:73530099-73530118 None:intergenic 40.0%
GAATCCTGATACTTGCAACT+TGG + chr3_2:73530116-73530135 Msa0423590:CDS 40.0%
TAGACCAAGTTGCAAGTATC+AGG - chr3_2:73530123-73530142 None:intergenic 40.0%
TTCTTACTTTCAGGAGCTTG+TGG + chr3_2:73530143-73530162 Msa0423590:CDS 40.0%
! GTATTCGAGTTCAAATCCTG+AGG + chr3_2:73530394-73530413 Msa0423590:intron 40.0%
GACTAAGAATTGTTCTCCTC+AGG - chr3_2:73530413-73530432 None:intergenic 40.0%
TTTACCTTCCAGACAAACTC+CGG + chr3_2:73530444-73530463 Msa0423590:intron 40.0%
GAATACACACTTCGGTTGAT+TGG + chr3_2:73530753-73530772 Msa0423590:CDS 40.0%
!! AAGGGTTCTGAATTTCAGCA+TGG + chr3_2:73530842-73530861 Msa0423590:CDS 40.0%
!! AGGGTTCTGAATTTCAGCAT+GGG + chr3_2:73530843-73530862 Msa0423590:CDS 40.0%
! TTGTTGTTGAACATGATCCG+TGG - chr3_2:73530873-73530892 None:intergenic 40.0%
AAGTACTAGCATCTTCAGGT+TGG - chr3_2:73530902-73530921 None:intergenic 40.0%
TCTCAAGTACTAGCATCTTC+AGG - chr3_2:73530906-73530925 None:intergenic 40.0%
CCCCAAAAAACATGCTATCT+TGG - chr3_2:73531064-73531083 None:intergenic 40.0%
TGCAAGTGCTCAATATAAGC+AGG + chr3_2:73531098-73531117 Msa0423590:three_prime_UTR 40.0%
AACCATGTAGGAACAACTTG+TGG - chr3_2:73529726-73529745 None:intergenic 40.0%
TCCATACAAAATTGGACAGG+AGG + chr3_2:73529758-73529777 Msa0423590:CDS 40.0%
! TCCTCCTGTCCAATTTTGTA+TGG - chr3_2:73529762-73529781 None:intergenic 40.0%
TAAAAGATCAAGGCATGACC+AGG + chr3_2:73529950-73529969 Msa0423590:intron 40.0%
AAAAGATCAAGGCATGACCA+GGG + chr3_2:73529951-73529970 Msa0423590:intron 40.0%
!! TGATCAAAAGCACTGGTTTC+TGG - chr3_2:73530042-73530061 None:intergenic 40.0%
! CTGAGTTTGATCAAAAGCAC+TGG - chr3_2:73530049-73530068 None:intergenic 40.0%
ATCCTACTGATGAGTTTGTG+TGG + chr3_2:73530094-73530113 Msa0423590:CDS 40.0%
TTCCACACAAACTCATCAGT+AGG - chr3_2:73530099-73530118 None:intergenic 40.0%
GAATCCTGATACTTGCAACT+TGG + chr3_2:73530116-73530135 Msa0423590:CDS 40.0%
TAGACCAAGTTGCAAGTATC+AGG - chr3_2:73530123-73530142 None:intergenic 40.0%
TTCTTACTTTCAGGAGCTTG+TGG + chr3_2:73530143-73530162 Msa0423590:CDS 40.0%
! GTATTCGAGTTCAAATCCTG+AGG + chr3_2:73530394-73530413 Msa0423590:intron 40.0%
GACTAAGAATTGTTCTCCTC+AGG - chr3_2:73530413-73530432 None:intergenic 40.0%
TTTACCTTCCAGACAAACTC+CGG + chr3_2:73530444-73530463 Msa0423590:intron 40.0%
GAATACACACTTCGGTTGAT+TGG + chr3_2:73530753-73530772 Msa0423590:CDS 40.0%
!! AAGGGTTCTGAATTTCAGCA+TGG + chr3_2:73530842-73530861 Msa0423590:CDS 40.0%
!! AGGGTTCTGAATTTCAGCAT+GGG + chr3_2:73530843-73530862 Msa0423590:CDS 40.0%
! TTGTTGTTGAACATGATCCG+TGG - chr3_2:73530873-73530892 None:intergenic 40.0%
AAGTACTAGCATCTTCAGGT+TGG - chr3_2:73530902-73530921 None:intergenic 40.0%
TCTCAAGTACTAGCATCTTC+AGG - chr3_2:73530906-73530925 None:intergenic 40.0%
CCCCAAAAAACATGCTATCT+TGG - chr3_2:73531064-73531083 None:intergenic 40.0%
TGCAAGTGCTCAATATAAGC+AGG + chr3_2:73531098-73531117 Msa0423590:three_prime_UTR 40.0%
GAAACAGACGGTGTGAAAGT+AGG + chr3_2:73529848-73529867 Msa0423590:CDS 45.0%
!!! GGCCTTGGTTTTGTTCCTTT+TGG - chr3_2:73529910-73529929 None:intergenic 45.0%
ACAATCACCTGAGGTTCAAC+TGG - chr3_2:73529931-73529950 None:intergenic 45.0%
TTGACAATCCGGAGTTTGTC+TGG - chr3_2:73530455-73530474 None:intergenic 45.0%
AGACAAACTCCGGATTGTCA+AGG + chr3_2:73530454-73530473 Msa0423590:intron 45.0%
GGAATGAAGCCTTGACAATC+CGG - chr3_2:73530466-73530485 None:intergenic 45.0%
AGGCTTCATTCCCCTGAAAA+CGG + chr3_2:73530474-73530493 Msa0423590:intron 45.0%
! CCTTGACAATCCGTTTTCAG+GGG - chr3_2:73530487-73530506 None:intergenic 45.0%
! GCCTTGACAATCCGTTTTCA+GGG - chr3_2:73530488-73530507 None:intergenic 45.0%
! AGCCTTGACAATCCGTTTTC+AGG - chr3_2:73530489-73530508 None:intergenic 45.0%
!! GGGTTCTGAATTTCAGCATG+GGG + chr3_2:73530844-73530863 Msa0423590:CDS 45.0%
ATTTCAGCATGGGGAAACCA+CGG + chr3_2:73530853-73530872 Msa0423590:CDS 45.0%
GAAACAGACGGTGTGAAAGT+AGG + chr3_2:73529848-73529867 Msa0423590:CDS 45.0%
!!! GGCCTTGGTTTTGTTCCTTT+TGG - chr3_2:73529910-73529929 None:intergenic 45.0%
ACAATCACCTGAGGTTCAAC+TGG - chr3_2:73529931-73529950 None:intergenic 45.0%
TTGACAATCCGGAGTTTGTC+TGG - chr3_2:73530455-73530474 None:intergenic 45.0%
AGACAAACTCCGGATTGTCA+AGG + chr3_2:73530454-73530473 Msa0423590:intron 45.0%
GGAATGAAGCCTTGACAATC+CGG - chr3_2:73530466-73530485 None:intergenic 45.0%
AGGCTTCATTCCCCTGAAAA+CGG + chr3_2:73530474-73530493 Msa0423590:intron 45.0%
! CCTTGACAATCCGTTTTCAG+GGG - chr3_2:73530487-73530506 None:intergenic 45.0%
! GCCTTGACAATCCGTTTTCA+GGG - chr3_2:73530488-73530507 None:intergenic 45.0%
! AGCCTTGACAATCCGTTTTC+AGG - chr3_2:73530489-73530508 None:intergenic 45.0%
!! GGGTTCTGAATTTCAGCATG+GGG + chr3_2:73530844-73530863 Msa0423590:CDS 45.0%
ATTTCAGCATGGGGAAACCA+CGG + chr3_2:73530853-73530872 Msa0423590:CDS 45.0%
GGCCACAAGTTGTTCCTACA+TGG + chr3_2:73529721-73529740 Msa0423590:CDS 50.0%
CAAGGCATGACCAGGGAATA+TGG + chr3_2:73529958-73529977 Msa0423590:intron 50.0%
ATAGATCCTCACATGTCGCG+TGG - chr3_2:73530004-73530023 None:intergenic 50.0%
GGAGCTTGTGGATCACTATG+AGG + chr3_2:73530155-73530174 Msa0423590:CDS 50.0%
CAATCCGGAGTTTGTCTGGA+AGG - chr3_2:73530451-73530470 None:intergenic 50.0%
!! CCCCTGAAAACGGATTGTCA+AGG + chr3_2:73530484-73530503 Msa0423590:intron 50.0%
GGCCACAAGTTGTTCCTACA+TGG + chr3_2:73529721-73529740 Msa0423590:CDS 50.0%
CAAGGCATGACCAGGGAATA+TGG + chr3_2:73529958-73529977 Msa0423590:intron 50.0%
ATAGATCCTCACATGTCGCG+TGG - chr3_2:73530004-73530023 None:intergenic 50.0%
GGAGCTTGTGGATCACTATG+AGG + chr3_2:73530155-73530174 Msa0423590:CDS 50.0%
CAATCCGGAGTTTGTCTGGA+AGG - chr3_2:73530451-73530470 None:intergenic 50.0%
!! CCCCTGAAAACGGATTGTCA+AGG + chr3_2:73530484-73530503 Msa0423590:intron 50.0%
ACCAAGGCCAGTTGAACCTC+AGG + chr3_2:73529921-73529940 Msa0423590:CDS 55.0%
! ACCTGAGGTTCAACTGGCCT+TGG - chr3_2:73529925-73529944 None:intergenic 55.0%
GGCATGACCAGGGAATATGG+AGG + chr3_2:73529961-73529980 Msa0423590:intron 55.0%
CCACTGTCCTCCATATTCCC+TGG - chr3_2:73529971-73529990 None:intergenic 55.0%
CCAGGGAATATGGAGGACAG+TGG + chr3_2:73529968-73529987 Msa0423590:intron 55.0%
ACCAAGGCCAGTTGAACCTC+AGG + chr3_2:73529921-73529940 Msa0423590:CDS 55.0%
! ACCTGAGGTTCAACTGGCCT+TGG - chr3_2:73529925-73529944 None:intergenic 55.0%
GGCATGACCAGGGAATATGG+AGG + chr3_2:73529961-73529980 Msa0423590:intron 55.0%
CCACTGTCCTCCATATTCCC+TGG - chr3_2:73529971-73529990 None:intergenic 55.0%
CCAGGGAATATGGAGGACAG+TGG + chr3_2:73529968-73529987 Msa0423590:intron 55.0%
GCTGTGCCACGCGACATGTG+AGG + chr3_2:73529995-73530014 Msa0423590:CDS 65.0%
GCTGTGCCACGCGACATGTG+AGG + chr3_2:73529995-73530014 Msa0423590:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 73529719 73531153 73529719 ID=Msa0423590;Name=Msa0423590
chr3_2 mRNA 73529719 73531153 73529719 ID=Msa0423590-mRNA-1;Parent=Msa0423590;Name=Msa0423590-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0.5|0.33|1|1|1|3|230|204
chr3_2 exon 73529719 73529942 73529719 ID=Msa0423590-mRNA-1:exon:18360;Parent=Msa0423590-mRNA-1
chr3_2 exon 73529972 73530176 73529972 ID=Msa0423590-mRNA-1:exon:18361;Parent=Msa0423590-mRNA-1
chr3_2 exon 73530738 73531153 73530738 ID=Msa0423590-mRNA-1:exon:18362;Parent=Msa0423590-mRNA-1
chr3_2 CDS 73529719 73529942 73529719 ID=Msa0423590-mRNA-1:cds;Parent=Msa0423590-mRNA-1
chr3_2 CDS 73529972 73530176 73529972 ID=Msa0423590-mRNA-1:cds;Parent=Msa0423590-mRNA-1
chr3_2 CDS 73530738 73530923 73530738 ID=Msa0423590-mRNA-1:cds;Parent=Msa0423590-mRNA-1
chr3_2 three_prime_UTR 73530924 73531153 73530924 ID=Msa0423590-mRNA-1:three_prime_utr;Parent=Msa0423590-mRNA-1
Gene Sequence

>Msa0423590

ATGGCCACAAGTTGTTCCTACATGGTTTCTACCAAATTATCCATACAAAATTGGACAGGAGGAAGAAGAAAAGAAGTAAGAAACAGAACTCCATTTTTCATATCAGCTCAACAACAATCTGATGTTAAGGAAACAGACGGTGTGAAAGTAGGAAAGAGAAAGAAATACCACAAAATCAACAAATTAATCCAAAAGGAACAAAACCAAGGCCAGTTGAACCTCAGGGAATATGGAGGACAGTGGTTGAGCTGTGCCACGCGACATGTGAGGATCTATGCAGCTTATATTGATCCAGAAACCAGTGCTTTTGATCAAACTCAGATGGATAAACTCACCCTTATTCTTGATCCTACTGATGAGTTTGTGTGGAATCCTGATACTTGCAACTTGGTCTATTCTTACTTTCAGGAGCTTGTGGATCACTATGAGGGTGCTCCATTGAATGAATACACACTTCGGTTGATTGGTTCAGACATAGAGCATTATATAAGAAAGTTGTTATATGATGGGGTAATCAAGTATAATATGAATGCAAGGGTTCTGAATTTCAGCATGGGGAAACCACGGATCATGTTCAACAACAATGATATCCAACCTGAAGATGCTAGTACTTGA

Protein sequence

>Msa0423590

MATSCSYMVSTKLSIQNWTGGRRKEVRNRTPFFISAQQQSDVKETDGVKVGKRKKYHKINKLIQKEQNQGQLNLREYGGQWLSCATRHVRIYAAYIDPETSAFDQTQMDKLTLILDPTDEFVWNPDTCNLVYSYFQELVDHYEGAPLNEYTLRLIGSDIEHYIRKLLYDGVIKYNMNARVLNFSMGKPRIMFNNNDIQPEDAST*