AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1223600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1223600 MtrunA17_Chr4g0075251 99.660 294 1 0 77 370 677 970 0.0 605
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1223600 AT4G04350.1 76.976 291 67 0 77 367 680 970 2.56e-164 485

Find 132 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATTAAAATTTCAATTT+TGG 0.095406 8_1:-88088416 Msa1223600:three_prime_UTR
GAAATTCTTGTTACACTTCT+AGG 0.129437 8_1:+88092096 None:intergenic
ATGCATTTACTCAATGTTTA+TGG 0.135462 8_1:-88088212 Msa1223600:three_prime_UTR
CATTTCCTTCTTAGCTTCTT+TGG 0.146996 8_1:+88092011 None:intergenic
AGATTGACCATCCAAATATT+TGG 0.193750 8_1:+88088553 None:intergenic
TGAAAAGCTATCCAAATATT+TGG 0.222159 8_1:-88088564 Msa1223600:CDS
ATGCCTCACAAGAAATTAAT+TGG 0.241436 8_1:+88088031 None:intergenic
TGAATTGCAGGTTCAATATA+TGG 0.257449 8_1:-88091340 Msa1223600:intron
GTCCTCCCAGTTCAGATTAA+TGG 0.266564 8_1:-88088659 Msa1223600:CDS
TTTGTCTGATGGCACATTTA+AGG 0.277698 8_1:-88090642 Msa1223600:CDS
AGAGCAGCAATAATGGTTTC+TGG 0.280217 8_1:-88088258 Msa1223600:three_prime_UTR
ATTTCCTTCTTAGCTTCTTT+GGG 0.310339 8_1:+88092012 None:intergenic
GTTCCTTAATGCAGCATATA+AGG 0.313044 8_1:-88090388 Msa1223600:intron
GCTTCCAAGCATAGGATGTT+AGG 0.317915 8_1:+88092135 None:intergenic
TATTGGTAATATGCTATGTT+TGG 0.321197 8_1:-88092073 Msa1223600:CDS
ATACCTTATATGCTGCATTA+AGG 0.326356 8_1:+88090385 None:intergenic
TAGAAATAGAGCAGCAATAA+TGG 0.328095 8_1:-88088265 Msa1223600:three_prime_UTR
TTCCATCTTTAGATATGCTT+TGG 0.328185 8_1:+88088350 None:intergenic
AATATAACAAAGTAGCATAA+TGG 0.342533 8_1:+88087774 None:intergenic
TTTGCATGATACTAGTGTTC+AGG 0.345752 8_1:-88087921 Msa1223600:three_prime_UTR
GTCTTGCCATTAATCTGAAC+TGG 0.349758 8_1:+88088653 None:intergenic
GGAGTGTAGGTCACAAAATC+TGG 0.353139 8_1:-88091123 Msa1223600:intron
ATTTGGATGGTCAATCTATC+AGG 0.375379 8_1:-88088547 Msa1223600:CDS
TCGTTTATATGAAATGTTCA+TGG 0.378252 8_1:-88090974 Msa1223600:CDS
ATGTTCATTTAACATATTAG+TGG 0.381440 8_1:+88091277 None:intergenic
AAAGCCTCAACCACTGATCT+TGG 0.387519 8_1:+88089804 None:intergenic
TTTCTATGATAACAGTCATA+TGG 0.389818 8_1:+88088282 None:intergenic
GATGATGTCATTTCTGAGTA+TGG 0.392026 8_1:-88091009 Msa1223600:CDS
CAACGAAGTTGTTCTATAGT+AGG 0.392214 8_1:+88090593 None:intergenic
TTTGGTCTTTCAGTGGATAC+AGG 0.392628 8_1:+88088368 None:intergenic
AACAACATTCAAAATCTTGC+CGG 0.394836 8_1:+88088508 None:intergenic
AGGAAGAGAATTTATGTTCC+CGG 0.399476 8_1:-88088527 Msa1223600:CDS
CACTGGAATTTCTGCAATGA+TGG 0.404997 8_1:-88090412 Msa1223600:CDS
AGAAAGAATTTCTGAGGAAA+AGG 0.409623 8_1:-88091249 Msa1223600:intron
ATATAACAAAGTAGCATAAT+GGG 0.410152 8_1:+88087775 None:intergenic
AGCAATGCCTAACCATGATC+TGG 0.418157 8_1:+88087996 None:intergenic
CAAGACAAGAGGTACCATTC+AGG 0.424680 8_1:-88088636 Msa1223600:CDS
GCCTAACCATGATCTGGGTT+TGG 0.430168 8_1:+88088002 None:intergenic
AATGAGAAGCATTTCCTCCT+TGG 0.431943 8_1:+88092048 None:intergenic
TACTCAGAAATGACATCATC+AGG 0.432097 8_1:+88091012 None:intergenic
GGAATGGATTTAGTCACGTT+AGG 0.434617 8_1:-88088135 Msa1223600:three_prime_UTR
AGTTATTACAATGGACAATA+AGG 0.442107 8_1:+88088188 None:intergenic
AGTCATATGGGATGAATACT+TGG 0.443832 8_1:+88088295 None:intergenic
AGATCTGTGATGGTTACAAA+TGG 0.445032 8_1:-88087948 Msa1223600:three_prime_UTR
AGTGTAACAAGAATTTCTAT+TGG 0.454344 8_1:-88092090 Msa1223600:CDS
AGGTTCAATATATGGCTTGT+AGG 0.455087 8_1:-88091332 Msa1223600:CDS
TACAACTTTGAAATTGTTAG+CGG 0.455977 8_1:+88087806 None:intergenic
TTGCATGATACTAGTGTTCA+GGG 0.456623 8_1:-88087920 Msa1223600:three_prime_UTR
CAAATTCATACCTTAGGAAA+AGG 0.456859 8_1:+88089696 None:intergenic
GAATGGATTTAGTCACGTTA+GGG 0.460844 8_1:-88088134 Msa1223600:three_prime_UTR
CAAGGGGTCTGTGATGATCT+AGG 0.461052 8_1:-88088080 Msa1223600:three_prime_UTR
TTCTATGATAACAGTCATAT+GGG 0.462631 8_1:+88088283 None:intergenic
TCAGTGGATACAGGGTAGTA+AGG 0.462757 8_1:+88088377 None:intergenic
TAAGAAGGAAATGCTTATCA+AGG 0.465606 8_1:-88092001 Msa1223600:CDS
TGGAATACTAGCGGCATTGA+AGG 0.474368 8_1:-88090713 Msa1223600:CDS
GCATGTTTCTTCAACCTGAA+TGG 0.476124 8_1:+88088622 None:intergenic
TGTTGTCCAAACCCAGATCA+TGG 0.476990 8_1:-88088008 Msa1223600:three_prime_UTR
CTTTGTTGGCAACTTTGGAA+TGG 0.478312 8_1:-88088151 Msa1223600:three_prime_UTR
CTCACCCAAAGAAGCTAAGA+AGG 0.479500 8_1:-88092016 Msa1223600:CDS
GTCGTATCCTTCAGATAAGC+AGG 0.490254 8_1:+88088686 None:intergenic
AGAACTTGGAGGTTGATTGT+TGG 0.493059 8_1:-88090671 Msa1223600:CDS
GTTGGCTTACCTTTGTCTGA+TGG 0.495326 8_1:-88090653 Msa1223600:CDS
CGTTTATATGAAATGTTCAT+GGG 0.496727 8_1:-88090973 Msa1223600:CDS
TGGTTAGGCATTGCTACAAA+TGG 0.496784 8_1:-88087988 Msa1223600:three_prime_UTR
CGGGCAAGTATACGTATGTC+AGG 0.496939 8_1:+88091075 None:intergenic
CCCATAAAATGAGTAAAAGC+AGG 0.499228 8_1:-88091050 Msa1223600:CDS
AAATCCTAACATCCTATGCT+TGG 0.501071 8_1:-88092139 Msa1223600:CDS
GACCAAAGCATATCTAAAGA+TGG 0.501615 8_1:-88088352 Msa1223600:three_prime_UTR
TCAGCCATGTGTGGCGCATA+TGG 0.506977 8_1:+88089765 None:intergenic
GGTTCAATATATGGCTTGTA+GGG 0.510193 8_1:-88091331 Msa1223600:CDS
AACAACATGTTCTTTCAAGC+AGG 0.512487 8_1:-88092189 None:intergenic
ATATCTAAAGATGGAAGCAT+TGG 0.513084 8_1:-88088343 Msa1223600:three_prime_UTR
TATACCGTGTACATTTCTAC+TGG 0.522029 8_1:-88088443 Msa1223600:three_prime_UTR
TTGCAAAATCTCATTCGACT+TGG 0.524398 8_1:-88087882 Msa1223600:three_prime_UTR
CATCCAATTAATTTCTTGTG+AGG 0.526153 8_1:-88088034 Msa1223600:three_prime_UTR
CCCCTTGATGCAGATACAAA+AGG 0.527047 8_1:+88088096 None:intergenic
ATATGCTATGTTTGGAGCCA+AGG 0.528430 8_1:-88092065 Msa1223600:CDS
ATGCTTGGAAGCAAACTCTT+CGG 0.528683 8_1:-88092124 Msa1223600:CDS
CACACATGGCTGAGGAGCTA+TGG 0.538021 8_1:-88089755 Msa1223600:CDS
GATATGCTTTGGTCTTTCAG+TGG 0.538723 8_1:+88088361 None:intergenic
AAGAGTTTGCTTCCAAGCAT+AGG 0.540735 8_1:+88092127 None:intergenic
TTGGTCTTTCAGTGGATACA+GGG 0.541508 8_1:+88088369 None:intergenic
CTCACAAGAAATTAATTGGA+TGG 0.547743 8_1:+88088035 None:intergenic
CAGGTAACAGAGGAAATTGA+AGG 0.548038 8_1:-88090447 Msa1223600:CDS
ACAACATTCAAAATCTTGCC+GGG 0.549727 8_1:+88088509 None:intergenic
AACATGTTCTTTCAAGCAGG+TGG 0.552059 8_1:-88092186 Msa1223600:CDS
CAAGGTCAAACCTACCTCAA+TGG 0.554861 8_1:+88090949 None:intergenic
GAGGAGCTATGGTCTCGTCT+TGG 0.556746 8_1:-88089744 Msa1223600:CDS
ACAACTTTGAAATTGTTAGC+GGG 0.558769 8_1:+88087807 None:intergenic
TGGCTTGTAGGGAATGAAGA+TGG 0.562533 8_1:-88091320 Msa1223600:CDS
ACATCCAAGATCAGTGGTTG+AGG 0.564673 8_1:-88089808 Msa1223600:CDS
GATCTGTGATGGTTACAAAT+GGG 0.566635 8_1:-88087947 Msa1223600:three_prime_UTR
AAGAAGGAAATGCTTATCAA+GGG 0.575315 8_1:-88092000 Msa1223600:CDS
AAGCTATCCAAATATTTGGA+TGG 0.575661 8_1:-88088560 Msa1223600:CDS
CAGTGGATACAGGGTAGTAA+GGG 0.579006 8_1:+88088378 None:intergenic
GCAATGCCTAACCATGATCT+GGG 0.579852 8_1:+88087997 None:intergenic
AGATGATGTGTGCATGATGT+TGG 0.587310 8_1:+88087831 None:intergenic
GGCAAATCCTGCTTATCTGA+AGG 0.587593 8_1:-88088693 Msa1223600:CDS
TCTTGCCATTAATCTGAACT+GGG 0.598472 8_1:+88088654 None:intergenic
GGGTCTGTGATGATCTAGGA+GGG 0.600615 8_1:-88088076 Msa1223600:three_prime_UTR
TATAGTAGGTTCCTCATCAA+CGG 0.601768 8_1:+88090607 None:intergenic
TCTTCATAAATGCATCGCTA+AGG 0.602895 8_1:-88090570 Msa1223600:intron
TCTAGGAGGGGATCTCATGA+AGG 0.603060 8_1:-88088063 Msa1223600:three_prime_UTR
ATCACCATATGCGCCACACA+TGG 0.603643 8_1:-88089769 Msa1223600:CDS
TGATGTTGGCATGCATCGCA+CGG 0.604184 8_1:+88087845 None:intergenic
CAGATTAATGGCAAGACAAG+AGG 0.609112 8_1:-88088647 Msa1223600:CDS
TTTCAGTATTCAGGTAACAG+AGG 0.620541 8_1:-88090457 Msa1223600:intron
TAGAACTGTATCCGTTGATG+AGG 0.620647 8_1:-88090618 Msa1223600:CDS
TAATCTAGAAAGAATTTCTG+AGG 0.627440 8_1:-88091255 Msa1223600:CDS
TAATGCAAAAGCATCCTCCT+CGG 0.628072 8_1:+88088598 None:intergenic
AAATGTTCATGGGACCATTG+AGG 0.629242 8_1:-88090963 Msa1223600:intron
CCATAAAATGAGTAAAAGCA+GGG 0.631882 8_1:-88091049 Msa1223600:CDS
TGCTATGTTTGGAGCCAAGG+AGG 0.636884 8_1:-88092062 Msa1223600:CDS
TTAAATGTGCCATCAGACAA+AGG 0.639481 8_1:+88090644 None:intergenic
ATATGCGCCACACATGGCTG+AGG 0.641382 8_1:-88089763 Msa1223600:CDS
TTCCTAGAGACTCAAAGACA+TGG 0.642919 8_1:-88090733 Msa1223600:intron
TGTGCTGAGCAGATCTGTGA+TGG 0.643555 8_1:-88087958 Msa1223600:three_prime_UTR
CATAGCTCCTCAGCCATGTG+TGG 0.647558 8_1:+88089756 None:intergenic
GCATTGCTACAAATGGCTGT+AGG 0.651861 8_1:-88087981 Msa1223600:three_prime_UTR
TCCAAACCCAGATCATGGTT+AGG 0.656576 8_1:-88088003 Msa1223600:three_prime_UTR
GGACAAACATCCAAGATCAG+TGG 0.665935 8_1:-88089814 Msa1223600:CDS
TACCTTAGGAAAAGGCTCGT+AGG 0.668738 8_1:+88089704 None:intergenic
GAAGGCACACGATTCAACAC+TGG 0.669921 8_1:-88090429 Msa1223600:CDS
AGAAGGAAATGCTTATCAAG+GGG 0.672294 8_1:-88091999 Msa1223600:intron
GGGGTCTGTGATGATCTAGG+AGG 0.673579 8_1:-88088077 Msa1223600:three_prime_UTR
GGTCTGTGATGATCTAGGAG+GGG 0.680080 8_1:-88088075 Msa1223600:three_prime_UTR
TGAAGAAACATGCACCGAGG+AGG 0.685995 8_1:-88088612 Msa1223600:CDS
CATAAAATGAGTAAAAGCAG+GGG 0.686594 8_1:-88091048 Msa1223600:CDS
TCAAAGACATGGAATACTAG+CGG 0.696079 8_1:-88090722 Msa1223600:CDS
TGCCATTAATCTGAACTGGG+AGG 0.720415 8_1:+88088657 None:intergenic
GCTTCCAGTAGAAATGTACA+CGG 0.729643 8_1:+88088439 None:intergenic
GGTTGAAGAAACATGCACCG+AGG 0.790617 8_1:-88088615 Msa1223600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAGAAATAAATTAAAAAG+GGG + chr8_1:88089079-88089098 None:intergenic 10.0%
!! CATAAAGAAATAAATTAAAA+AGG + chr8_1:88089081-88089100 None:intergenic 10.0%
!!! CTTTTTAATTTATTTCTTTA+TGG - chr8_1:88089079-88089098 Msa1223600:intron 10.0%
!! AAAATAATTATGTAGTTATA+AGG + chr8_1:88089807-88089826 None:intergenic 10.0%
!!! TTCTTATAATTTTATGATAA+AGG - chr8_1:88090879-88090898 Msa1223600:intron 10.0%
!!! AATATTTTGAAATCTTTAAA+GGG - chr8_1:88091118-88091137 Msa1223600:intron 10.0%
!!! AACAATTAAAATTTCAATTT+TGG - chr8_1:88091516-88091535 Msa1223600:intron 10.0%
!!! TGTATTAAGTTTTTATATTG+GGG + chr8_1:88088215-88088234 None:intergenic 15.0%
!!! GTGTATTAAGTTTTTATATT+GGG + chr8_1:88088216-88088235 None:intergenic 15.0%
!!! AGTGTATTAAGTTTTTATAT+TGG + chr8_1:88088217-88088236 None:intergenic 15.0%
!!! ATAAATTCACAATTTTCTAA+TGG - chr8_1:88088567-88088586 Msa1223600:CDS 15.0%
!!! TTTAATTTATTTCTTTATGG+TGG - chr8_1:88089082-88089101 Msa1223600:intron 15.0%
!!! AAAAATAGAAAATTTGCTTT+TGG + chr8_1:88089712-88089731 None:intergenic 15.0%
!!! TTTTTTATCTTATTCATGTT+TGG - chr8_1:88089886-88089905 Msa1223600:intron 15.0%
!! TGTGTAACATAATAAAATAT+TGG + chr8_1:88090572-88090591 None:intergenic 15.0%
!!! CAATATTTTGAAATCTTTAA+AGG - chr8_1:88091117-88091136 Msa1223600:CDS 15.0%
!!! ATATTTTGAAATCTTTAAAG+GGG - chr8_1:88091119-88091138 Msa1223600:intron 15.0%
!! AAAAAACTAAGTTATTACAA+TGG + chr8_1:88091756-88091775 None:intergenic 15.0%
!!! TAGTTTTTTTTTTACTTTGT+TGG - chr8_1:88091767-88091786 Msa1223600:intron 15.0%
!! TTGGTACTAAAGAAAATTAT+TGG - chr8_1:88088090-88088109 Msa1223600:three_prime_UTR 20.0%
!!! GTTATTATTTAACTTCTAGA+AGG + chr8_1:88088261-88088280 None:intergenic 20.0%
!! ATGTTCATTTAACATATTAG+TGG + chr8_1:88088658-88088677 None:intergenic 20.0%
!!! TCATAATGTTGTTTTGATTA+AGG + chr8_1:88089046-88089065 None:intergenic 20.0%
!!! TATGATCTCTATATTTTTCT+TGG - chr8_1:88090080-88090099 Msa1223600:intron 20.0%
!! TCTCTAAATCTTTCTTAATA+GGG + chr8_1:88090352-88090371 None:intergenic 20.0%
!! ATCTCTAAATCTTTCTTAAT+AGG + chr8_1:88090353-88090372 None:intergenic 20.0%
!! TGATTTATGATAGAACATTA+TGG - chr8_1:88090451-88090470 Msa1223600:intron 20.0%
!!! AAATATTGGTTAGACATTAT+TGG + chr8_1:88090558-88090577 None:intergenic 20.0%
!!! ATATGTAAAAGCTATACTTT+TGG + chr8_1:88090645-88090664 None:intergenic 20.0%
!!! CTTTTACATATTTATCACAA+AGG - chr8_1:88090654-88090673 Msa1223600:CDS 20.0%
!!! TCATTTTCATAGTATCATTT+GGG + chr8_1:88090956-88090975 None:intergenic 20.0%
!!! TTCATTTTCATAGTATCATT+TGG + chr8_1:88090957-88090976 None:intergenic 20.0%
!! ACATTTAAATACTTATACTG+TGG - chr8_1:88091054-88091073 Msa1223600:CDS 20.0%
!!! TATTTTGAAATCTTTAAAGG+GGG - chr8_1:88091120-88091139 Msa1223600:intron 20.0%
!! ATATAACAAAGTAGCATAAT+GGG + chr8_1:88092160-88092179 None:intergenic 20.0%
!! AATATAACAAAGTAGCATAA+TGG + chr8_1:88092161-88092180 None:intergenic 20.0%
! AGTGTAACAAGAATTTCTAT+TGG - chr8_1:88087842-88087861 Msa1223600:three_prime_UTR 25.0%
!! TATTGGTAATATGCTATGTT+TGG - chr8_1:88087859-88087878 Msa1223600:three_prime_UTR 25.0%
!!! TTTTTAGTTTTCCAACTTCT+AGG - chr8_1:88087988-88088007 Msa1223600:three_prime_UTR 25.0%
! TTTAATGGAAATTCTTCGAT+TGG - chr8_1:88088071-88088090 Msa1223600:three_prime_UTR 25.0%
! TTAAATAATAACTGCCAACT+TGG - chr8_1:88088269-88088288 Msa1223600:three_prime_UTR 25.0%
! ATTGATAAATCCACCAATTA+GGG - chr8_1:88088318-88088337 Msa1223600:three_prime_UTR 25.0%
! AACTCATTTAAATCCCTAAT+TGG + chr8_1:88088334-88088353 None:intergenic 25.0%
! GGATTTAAATGAGTTCAATA+AGG - chr8_1:88088339-88088358 Msa1223600:three_prime_UTR 25.0%
! TAATCTAGAAAGAATTTCTG+AGG - chr8_1:88088677-88088696 Msa1223600:CDS 25.0%
! AAAGGTTCAAAATCTTAACT+CGG + chr8_1:88088752-88088771 None:intergenic 25.0%
! TCTTGTCAAGGAAAAAAAAA+AGG + chr8_1:88088770-88088789 None:intergenic 25.0%
! TCGTTTATATGAAATGTTCA+TGG - chr8_1:88088958-88088977 Msa1223600:intron 25.0%
! CGTTTATATGAAATGTTCAT+GGG - chr8_1:88088959-88088978 Msa1223600:intron 25.0%
! AATATATGCCACAAGTAATA+GGG + chr8_1:88089011-88089030 None:intergenic 25.0%
!! TTTATTTCTTTATGGTGGTA+TGG - chr8_1:88089087-88089106 Msa1223600:intron 25.0%
!! TTATTTCTTTATGGTGGTAT+GGG - chr8_1:88089088-88089107 Msa1223600:intron 25.0%
! ATCAAAGAGAAAATTGATGT+GGG + chr8_1:88089161-88089180 None:intergenic 25.0%
! AATCAAAGAGAAAATTGATG+TGG + chr8_1:88089162-88089181 None:intergenic 25.0%
!!! TTTTCTTGTGTCTTTGTTTA+TGG - chr8_1:88089411-88089430 Msa1223600:intron 25.0%
! AGAATTTACTTTCAGTATTC+AGG - chr8_1:88089466-88089485 Msa1223600:intron 25.0%
!!! GAACAATATTGATTTGTCTA+TGG - chr8_1:88089615-88089634 Msa1223600:intron 25.0%
!!! TATTGATTTGTCTATGGAAT+AGG - chr8_1:88089621-88089640 Msa1223600:intron 25.0%
!!! ATTGATTTGTCTATGGAATA+GGG - chr8_1:88089622-88089641 Msa1223600:intron 25.0%
!! TATGTAATATCTGTCTGTTT+TGG + chr8_1:88089666-88089685 None:intergenic 25.0%
!! TTATCACCTATGCAATTTTT+CGG + chr8_1:88089771-88089790 None:intergenic 25.0%
!!! TTTAGCTTTAATTGCAGTTT+CGG - chr8_1:88089830-88089849 Msa1223600:intron 25.0%
! CATCATATGTATATCCTATA+TGG - chr8_1:88089944-88089963 Msa1223600:intron 25.0%
! TGATGTACATTATACCATAT+AGG + chr8_1:88089961-88089980 None:intergenic 25.0%
! TTTATGAAGTGTATTGTGTT+TGG - chr8_1:88089985-88090004 Msa1223600:intron 25.0%
!! TTTTCCTAAGGTATGAATTT+GGG - chr8_1:88090238-88090257 Msa1223600:intron 25.0%
! ACTTAACAAATCATACCATT+AGG + chr8_1:88090784-88090803 None:intergenic 25.0%
! AAAAAAACACCAACACAAAT+AGG + chr8_1:88090910-88090929 None:intergenic 25.0%
!!! TTGTGTTGGTGTTTTTTTTT+TGG - chr8_1:88090912-88090931 Msa1223600:intron 25.0%
! AAATGTTTGTAAAAGACTTC+TGG + chr8_1:88091040-88091059 None:intergenic 25.0%
! ATTGAAATTTAAACACAACC+TGG + chr8_1:88091154-88091173 None:intergenic 25.0%
! TGAAAAGCTATCCAAATATT+TGG - chr8_1:88091368-88091387 Msa1223600:intron 25.0%
! TTCTATGATAACAGTCATAT+GGG + chr8_1:88091652-88091671 None:intergenic 25.0%
! TTTCTATGATAACAGTCATA+TGG + chr8_1:88091653-88091672 None:intergenic 25.0%
! ATGCATTTACTCAATGTTTA+TGG - chr8_1:88091720-88091739 Msa1223600:intron 25.0%
! AGTTATTACAATGGACAATA+AGG + chr8_1:88091747-88091766 None:intergenic 25.0%
!!! TACAACTTTGAAATTGTTAG+CGG + chr8_1:88092129-88092148 None:intergenic 25.0%
GAAATTCTTGTTACACTTCT+AGG + chr8_1:88087839-88087858 None:intergenic 30.0%
ATTTCCTTCTTAGCTTCTTT+GGG + chr8_1:88087923-88087942 None:intergenic 30.0%
TAAGAAGGAAATGCTTATCA+AGG - chr8_1:88087931-88087950 Msa1223600:three_prime_UTR 30.0%
AAGAAGGAAATGCTTATCAA+GGG - chr8_1:88087932-88087951 Msa1223600:three_prime_UTR 30.0%
ACTATCACGAACTACTTTAA+TGG - chr8_1:88088056-88088075 Msa1223600:three_prime_UTR 30.0%
CCTTATCTTTAATCTAAGTG+GGG + chr8_1:88088127-88088146 None:intergenic 30.0%
GCCTTATCTTTAATCTAAGT+GGG + chr8_1:88088128-88088147 None:intergenic 30.0%
! AGCCTTATCTTTAATCTAAG+TGG + chr8_1:88088129-88088148 None:intergenic 30.0%
GATTGATAAATCCACCAATT+AGG - chr8_1:88088317-88088336 Msa1223600:three_prime_UTR 30.0%
TCATTTAAATCCCTAATTGG+TGG + chr8_1:88088331-88088350 None:intergenic 30.0%
! CAACACTAACAATTGGTAAT+AGG + chr8_1:88088374-88088393 None:intergenic 30.0%
CTATTACCAATTGTTAGTGT+TGG - chr8_1:88088372-88088391 Msa1223600:three_prime_UTR 30.0%
TTTCTTCTGCTTGAAATTTG+AGG - chr8_1:88088522-88088541 Msa1223600:CDS 30.0%
TTCTTCTGCTTGAAATTTGA+GGG - chr8_1:88088523-88088542 Msa1223600:CDS 30.0%
TTTCTAATGGTTTGAATTGC+AGG - chr8_1:88088580-88088599 Msa1223600:CDS 30.0%
TGAATTGCAGGTTCAATATA+TGG - chr8_1:88088592-88088611 Msa1223600:CDS 30.0%
! AGAAAGAATTTCTGAGGAAA+AGG - chr8_1:88088683-88088702 Msa1223600:CDS 30.0%
GGTAATATAAGTTCTTGTCA+AGG + chr8_1:88088782-88088801 None:intergenic 30.0%
! TTTTACTCATTTTATGGGCA+CGG + chr8_1:88088880-88088899 None:intergenic 30.0%
!! CCTGCTTTTACTCATTTTAT+GGG + chr8_1:88088885-88088904 None:intergenic 30.0%
CCATAAAATGAGTAAAAGCA+GGG - chr8_1:88088883-88088902 Msa1223600:intron 30.0%
CATAAAATGAGTAAAAGCAG+GGG - chr8_1:88088884-88088903 Msa1223600:intron 30.0%
CAATATATGCCACAAGTAAT+AGG + chr8_1:88089012-88089031 None:intergenic 30.0%
ATTACTTGTGGCATATATTG+TGG - chr8_1:88089012-88089031 Msa1223600:intron 30.0%
TATTTCTTTATGGTGGTATG+GGG - chr8_1:88089089-88089108 Msa1223600:intron 30.0%
TCAAAGAGAAAATTGATGTG+GGG + chr8_1:88089160-88089179 None:intergenic 30.0%
! TCTCTAGGAACATGTTAAAA+AGG + chr8_1:88089189-88089208 None:intergenic 30.0%
!!! ATCGTTTTTTAGGTAGAACT+TGG - chr8_1:88089247-88089266 Msa1223600:intron 30.0%
ATGGATTTAACAAGCTGATT+TGG - chr8_1:88089430-88089449 Msa1223600:intron 30.0%
ATACCTTATATGCTGCATTA+AGG + chr8_1:88089550-88089569 None:intergenic 30.0%
CTAAATCCGAAAAATTGCAT+AGG - chr8_1:88089762-88089781 Msa1223600:CDS 30.0%
TCCATAAGTGAGTGAAAATA+GGG + chr8_1:88089858-88089877 None:intergenic 30.0%
TTCCATAAGTGAGTGAAAAT+AGG + chr8_1:88089859-88089878 None:intergenic 30.0%
! TTTTCACTCACTTATGGAAT+TGG - chr8_1:88089860-88089879 Msa1223600:intron 30.0%
! TTCTTGGCATATATTTTCAG+TGG - chr8_1:88090096-88090115 Msa1223600:intron 30.0%
! TCTTGGCATATATTTTCAGT+GGG - chr8_1:88090097-88090116 Msa1223600:intron 30.0%
CAAATTCATACCTTAGGAAA+AGG + chr8_1:88090239-88090258 None:intergenic 30.0%
! CTTTTCCTAAGGTATGAATT+TGG - chr8_1:88090237-88090256 Msa1223600:intron 30.0%
TGAATAGGAATGGTTTGATA+TGG + chr8_1:88090265-88090284 None:intergenic 30.0%
AAACCATTCCTATTCATTCA+TGG - chr8_1:88090269-88090288 Msa1223600:intron 30.0%
GATTAATGAGTTAGATCGAA+TGG - chr8_1:88090370-88090389 Msa1223600:intron 30.0%
! TATTGGTTAGACATTATTGG+AGG + chr8_1:88090555-88090574 None:intergenic 30.0%
! AATTACTGATTGCGTCAAAT+AGG - chr8_1:88090602-88090621 Msa1223600:CDS 30.0%
! TGTAAAAGCTATACTTTTGG+TGG + chr8_1:88090642-88090661 None:intergenic 30.0%
!!! AGCGGTATTTTTTTTCCTAA+TGG - chr8_1:88090766-88090785 Msa1223600:intron 30.0%
!!! TTGCAACAATTTTTTCCTCT+TGG - chr8_1:88090819-88090838 Msa1223600:intron 30.0%
!!! TGCAACAATTTTTTCCTCTT+GGG - chr8_1:88090820-88090839 Msa1223600:intron 30.0%
AAGCTATCCAAATATTTGGA+TGG - chr8_1:88091372-88091391 Msa1223600:intron 30.0%
AGATTGACCATCCAAATATT+TGG + chr8_1:88091382-88091401 None:intergenic 30.0%
AACAACATTCAAAATCTTGC+CGG + chr8_1:88091427-88091446 None:intergenic 30.0%
! CAAGATTTTGAATGTTGTTC+TGG - chr8_1:88091428-88091447 Msa1223600:intron 30.0%
!! CACCAATCTTGATGTTTTTA+CGG + chr8_1:88091455-88091474 None:intergenic 30.0%
TTCCATCTTTAGATATGCTT+TGG + chr8_1:88091585-88091604 None:intergenic 30.0%
! ATATCTAAAGATGGAAGCAT+TGG - chr8_1:88091589-88091608 Msa1223600:intron 30.0%
TAGAAATAGAGCAGCAATAA+TGG - chr8_1:88091667-88091686 Msa1223600:intron 30.0%
! TTTTACTTTGTTGGCAACTT+TGG - chr8_1:88091776-88091795 Msa1223600:intron 30.0%
CTCACAAGAAATTAATTGGA+TGG + chr8_1:88091900-88091919 None:intergenic 30.0%
CATCCAATTAATTTCTTGTG+AGG - chr8_1:88091898-88091917 Msa1223600:intron 30.0%
ATGCCTCACAAGAAATTAAT+TGG + chr8_1:88091904-88091923 None:intergenic 30.0%
!! ACAACTTTGAAATTGTTAGC+GGG + chr8_1:88092128-88092147 None:intergenic 30.0%
AAATCCTAACATCCTATGCT+TGG - chr8_1:88087793-88087812 Msa1223600:three_prime_UTR 35.0%
CATTTCCTTCTTAGCTTCTT+TGG + chr8_1:88087924-88087943 None:intergenic 35.0%
AGAAGGAAATGCTTATCAAG+GGG - chr8_1:88087933-88087952 Msa1223600:three_prime_UTR 35.0%
GAAACTCATTTCCTAGAAGT+TGG + chr8_1:88088002-88088021 None:intergenic 35.0%
CCCCACTTAGATTAAAGATA+AGG - chr8_1:88088124-88088143 Msa1223600:three_prime_UTR 35.0%
ATAACCAACTTGTAAGGTGA+GGG + chr8_1:88088178-88088197 None:intergenic 35.0%
AATAACCAACTTGTAAGGTG+AGG + chr8_1:88088179-88088198 None:intergenic 35.0%
!! TCACCTTACAAGTTGGTTAT+TGG - chr8_1:88088178-88088197 Msa1223600:three_prime_UTR 35.0%
!! CACCTTACAAGTTGGTTATT+GGG - chr8_1:88088179-88088198 Msa1223600:three_prime_UTR 35.0%
!! ACCTTACAAGTTGGTTATTG+GGG - chr8_1:88088180-88088199 Msa1223600:three_prime_UTR 35.0%
ATTGCACCAACACTAACAAT+TGG + chr8_1:88088381-88088400 None:intergenic 35.0%
TGGTTTATGACACATTGGAA+GGG + chr8_1:88088474-88088493 None:intergenic 35.0%
TTCCAATGTGTCATAAACCA+GGG - chr8_1:88088474-88088493 Msa1223600:CDS 35.0%
! AGGTTCAATATATGGCTTGT+AGG - chr8_1:88088600-88088619 Msa1223600:CDS 35.0%
! GGTTCAATATATGGCTTGTA+GGG - chr8_1:88088601-88088620 Msa1223600:CDS 35.0%
GAACTTATATTACCTTTCCC+TGG - chr8_1:88088788-88088807 Msa1223600:intron 35.0%
! GTATGTCAGGATTTTCTTTC+AGG + chr8_1:88088847-88088866 None:intergenic 35.0%
! TTTACTCATTTTATGGGCAC+GGG + chr8_1:88088879-88088898 None:intergenic 35.0%
CCCATAAAATGAGTAAAAGC+AGG - chr8_1:88088882-88088901 Msa1223600:intron 35.0%
!! CCCTGCTTTTACTCATTTTA+TGG + chr8_1:88088886-88088905 None:intergenic 35.0%
TACTCAGAAATGACATCATC+AGG + chr8_1:88088923-88088942 None:intergenic 35.0%
! GATGATGTCATTTCTGAGTA+TGG - chr8_1:88088923-88088942 Msa1223600:intron 35.0%
TATTAGAACAAGATCACAGC+TGG + chr8_1:88089126-88089145 None:intergenic 35.0%
CTGTGATCTTGTTCTAATAC+AGG - chr8_1:88089127-88089146 Msa1223600:intron 35.0%
TCAAAGACATGGAATACTAG+CGG - chr8_1:88089210-88089229 Msa1223600:intron 35.0%
!!! GTTTTTTAGGTAGAACTTGG+AGG - chr8_1:88089250-88089269 Msa1223600:intron 35.0%
TTAAATGTGCCATCAGACAA+AGG + chr8_1:88089291-88089310 None:intergenic 35.0%
TTTGTCTGATGGCACATTTA+AGG - chr8_1:88089290-88089309 Msa1223600:intron 35.0%
TATAGTAGGTTCCTCATCAA+CGG + chr8_1:88089328-88089347 None:intergenic 35.0%
CAACGAAGTTGTTCTATAGT+AGG + chr8_1:88089342-88089361 None:intergenic 35.0%
TCTTCATAAATGCATCGCTA+AGG - chr8_1:88089362-88089381 Msa1223600:intron 35.0%
TTTCAGTATTCAGGTAACAG+AGG - chr8_1:88089475-88089494 Msa1223600:intron 35.0%
GTTCCTTAATGCAGCATATA+AGG - chr8_1:88089544-88089563 Msa1223600:intron 35.0%
!!! TTCCATTGTTTTTGCATCCA+AGG - chr8_1:88089584-88089603 Msa1223600:intron 35.0%
!!! TCCATTGTTTTTGCATCCAA+GGG - chr8_1:88089585-88089604 Msa1223600:intron 35.0%
ATATTGTTCGCTTATTCCCT+TGG + chr8_1:88089604-88089623 None:intergenic 35.0%
CCATAAGTGAGTGAAAATAG+GGG + chr8_1:88089857-88089876 None:intergenic 35.0%
AAGCCATGAATGAATAGGAA+TGG + chr8_1:88090275-88090294 None:intergenic 35.0%
TTGACAAGCCATGAATGAAT+AGG + chr8_1:88090280-88090299 None:intergenic 35.0%
! TAGATCGAATGGTGTCAATT+TGG - chr8_1:88090381-88090400 Msa1223600:intron 35.0%
ACGCAATCAGTAATTGTAGA+GGG + chr8_1:88090597-88090616 None:intergenic 35.0%
AAAAATACCGCTGTAAGTTG+TGG + chr8_1:88090758-88090777 None:intergenic 35.0%
TCATAGTATCATTTGGGCTT+AGG + chr8_1:88090950-88090969 None:intergenic 35.0%
ACATATAACAGACATGATCG+TGG + chr8_1:88091209-88091228 None:intergenic 35.0%
CTGTTATATGTTGTAACTGC+AGG - chr8_1:88091218-88091237 Msa1223600:intron 35.0%
TCTTGCCATTAATCTGAACT+GGG + chr8_1:88091281-88091300 None:intergenic 35.0%
! ATGCTTTTGCATTAGCATCT+AGG - chr8_1:88091343-88091362 Msa1223600:intron 35.0%
! TGCTTTTGCATTAGCATCTA+GGG - chr8_1:88091344-88091363 Msa1223600:intron 35.0%
ATTTGGATGGTCAATCTATC+AGG - chr8_1:88091385-88091404 Msa1223600:intron 35.0%
AGGAAGAGAATTTATGTTCC+CGG - chr8_1:88091405-88091424 Msa1223600:intron 35.0%
ACAACATTCAAAATCTTGCC+GGG + chr8_1:88091426-88091445 None:intergenic 35.0%
GACCGTAAAAACATCAAGAT+TGG - chr8_1:88091450-88091469 Msa1223600:intron 35.0%
TATACCGTGTACATTTCTAC+TGG - chr8_1:88091489-88091508 Msa1223600:intron 35.0%
GACCAAAGCATATCTAAAGA+TGG - chr8_1:88091580-88091599 Msa1223600:intron 35.0%
AGTCATATGGGATGAATACT+TGG + chr8_1:88091640-88091659 None:intergenic 35.0%
! GAATGGATTTAGTCACGTTA+GGG - chr8_1:88091798-88091817 Msa1223600:intron 35.0%
! AACCTTTTGTATCTGCATCA+AGG - chr8_1:88091834-88091853 Msa1223600:intron 35.0%
! ACCTTTTGTATCTGCATCAA+GGG - chr8_1:88091835-88091854 Msa1223600:intron 35.0%
AGATCTGTGATGGTTACAAA+TGG - chr8_1:88091984-88092003 Msa1223600:intron 35.0%
GATCTGTGATGGTTACAAAT+GGG - chr8_1:88091985-88092004 Msa1223600:intron 35.0%
TTTGCATGATACTAGTGTTC+AGG - chr8_1:88092011-88092030 Msa1223600:CDS 35.0%
TTGCATGATACTAGTGTTCA+GGG - chr8_1:88092012-88092031 Msa1223600:CDS 35.0%
TTGCAAAATCTCATTCGACT+TGG - chr8_1:88092050-88092069 Msa1223600:CDS 35.0%
! AAGAGTTTGCTTCCAAGCAT+AGG + chr8_1:88087808-88087827 None:intergenic 40.0%
ATGCTTGGAAGCAAACTCTT+CGG - chr8_1:88087808-88087827 Msa1223600:three_prime_UTR 40.0%
! ATATGCTATGTTTGGAGCCA+AGG - chr8_1:88087867-88087886 Msa1223600:three_prime_UTR 40.0%
!! AATGAGAAGCATTTCCTCCT+TGG + chr8_1:88087887-88087906 None:intergenic 40.0%
CTTTAATCTAAGTGGGGCTT+TGG + chr8_1:88088121-88088140 None:intergenic 40.0%
TCCCCAATAACCAACTTGTA+AGG + chr8_1:88088184-88088203 None:intergenic 40.0%
! TTAACCGAGTTTTGCATCTC+AGG - chr8_1:88088413-88088432 Msa1223600:three_prime_UTR 40.0%
AGAACCTGAGATGCAAAACT+CGG + chr8_1:88088420-88088439 None:intergenic 40.0%
TCTCAGGTTCTCTTTGACAT+TGG - chr8_1:88088429-88088448 Msa1223600:three_prime_UTR 40.0%
CTGGTTTATGACACATTGGA+AGG + chr8_1:88088475-88088494 None:intergenic 40.0%
CTTCCAATGTGTCATAAACC+AGG - chr8_1:88088473-88088492 Msa1223600:CDS 40.0%
TCCAATGTGTCATAAACCAG+GGG - chr8_1:88088475-88088494 Msa1223600:CDS 40.0%
ATAAACCAGGGGATTATCCT+TGG - chr8_1:88088486-88088505 Msa1223600:CDS 40.0%
TAAACCAGGGGATTATCCTT+GGG - chr8_1:88088487-88088506 Msa1223600:CDS 40.0%
GAAATGAAATTACCTCCCCA+AGG + chr8_1:88088506-88088525 None:intergenic 40.0%
! ATTTTGTGACCTACACTCCA+GGG + chr8_1:88088808-88088827 None:intergenic 40.0%
AAATGTTCATGGGACCATTG+AGG - chr8_1:88088969-88088988 Msa1223600:intron 40.0%
ACCTTGAACCCTATTACTTG+TGG - chr8_1:88089000-88089019 Msa1223600:intron 40.0%
GTGGCATATATTGTGGAGAT+TGG - chr8_1:88089019-88089038 Msa1223600:intron 40.0%
TTCCTAGAGACTCAAAGACA+TGG - chr8_1:88089199-88089218 Msa1223600:intron 40.0%
TTCCATGTCTTTGAGTCTCT+AGG + chr8_1:88089204-88089223 None:intergenic 40.0%
!!! GAAGGCGTACATCGTTTTTT+AGG - chr8_1:88089237-88089256 Msa1223600:intron 40.0%
! AGAACTTGGAGGTTGATTGT+TGG - chr8_1:88089261-88089280 Msa1223600:intron 40.0%
TAGAACTGTATCCGTTGATG+AGG - chr8_1:88089314-88089333 Msa1223600:intron 40.0%
CAGGTAACAGAGGAAATTGA+AGG - chr8_1:88089485-88089504 Msa1223600:intron 40.0%
CACTGGAATTTCTGCAATGA+TGG - chr8_1:88089520-88089539 Msa1223600:intron 40.0%
TCCCTTGGATGCAAAAACAA+TGG + chr8_1:88089589-88089608 None:intergenic 40.0%
! CCCCTATTTTCACTCACTTA+TGG - chr8_1:88089854-88089873 Msa1223600:intron 40.0%
AGAGAGAAGCGAAGGAAAAA+AGG + chr8_1:88090046-88090065 None:intergenic 40.0%
! CGTAGGCTAATGATTTTGTG+TGG + chr8_1:88090214-88090233 None:intergenic 40.0%
TGGACCCAAATTCATACCTT+AGG + chr8_1:88090245-88090264 None:intergenic 40.0%
! TCGAATGGTGTCAATTTGGA+TGG - chr8_1:88090385-88090404 Msa1223600:intron 40.0%
! CGAATGGTGTCAATTTGGAT+GGG - chr8_1:88090386-88090405 Msa1223600:intron 40.0%
GACGCAATCAGTAATTGTAG+AGG + chr8_1:88090598-88090617 None:intergenic 40.0%
TTGCGTCAAATAGGTATCTC+TGG - chr8_1:88090611-88090630 Msa1223600:CDS 40.0%
! TTACTCAAGTTGTTCCCAAG+AGG + chr8_1:88090837-88090856 None:intergenic 40.0%
AAGGCACAACCTATTTGTGT+TGG - chr8_1:88090898-88090917 Msa1223600:intron 40.0%
CTTATACTGTGGTTGTGAAG+AGG - chr8_1:88091065-88091084 Msa1223600:CDS 40.0%
! TTAAAGGGGGATGTTTTTCC+AGG - chr8_1:88091133-88091152 Msa1223600:intron 40.0%
GTCTTGCCATTAATCTGAAC+TGG + chr8_1:88091282-88091301 None:intergenic 40.0%
CAGATTAATGGCAAGACAAG+AGG - chr8_1:88091285-88091304 Msa1223600:CDS 40.0%
GCATGTTTCTTCAACCTGAA+TGG + chr8_1:88091313-88091332 None:intergenic 40.0%
!! TAATGCAAAAGCATCCTCCT+CGG + chr8_1:88091337-88091356 None:intergenic 40.0%
GCTTCCAGTAGAAATGTACA+CGG + chr8_1:88091496-88091515 None:intergenic 40.0%
! TTGGTCTTTCAGTGGATACA+GGG + chr8_1:88091566-88091585 None:intergenic 40.0%
! TTTGGTCTTTCAGTGGATAC+AGG + chr8_1:88091567-88091586 None:intergenic 40.0%
! GATATGCTTTGGTCTTTCAG+TGG + chr8_1:88091574-88091593 None:intergenic 40.0%
AGAGCAGCAATAATGGTTTC+TGG - chr8_1:88091674-88091693 Msa1223600:intron 40.0%
! CTTTGTTGGCAACTTTGGAA+TGG - chr8_1:88091781-88091800 Msa1223600:intron 40.0%
! GGAATGGATTTAGTCACGTT+AGG - chr8_1:88091797-88091816 Msa1223600:intron 40.0%
! CCTTTTGTATCTGCATCAAG+GGG - chr8_1:88091836-88091855 Msa1223600:intron 40.0%
! TGGTTAGGCATTGCTACAAA+TGG - chr8_1:88091944-88091963 Msa1223600:intron 40.0%
AGATGATGTGTGCATGATGT+TGG + chr8_1:88092104-88092123 None:intergenic 40.0%
GCTTCCAAGCATAGGATGTT+AGG + chr8_1:88087800-88087819 None:intergenic 45.0%
CTCACCCAAAGAAGCTAAGA+AGG - chr8_1:88087916-88087935 Msa1223600:three_prime_UTR 45.0%
ACATCCCTCACCTTACAAGT+TGG - chr8_1:88088171-88088190 Msa1223600:three_prime_UTR 45.0%
!! CATTGGTGTTGTATCCACCA+AGG - chr8_1:88088446-88088465 Msa1223600:three_prime_UTR 45.0%
TCCCCTGGTTTATGACACAT+TGG + chr8_1:88088479-88088498 None:intergenic 45.0%
AAACCAGGGGATTATCCTTG+GGG - chr8_1:88088488-88088507 Msa1223600:CDS 45.0%
! TGGCTTGTAGGGAATGAAGA+TGG - chr8_1:88088612-88088631 Msa1223600:CDS 45.0%
ATTACCTTTCCCTGGAGTGT+AGG - chr8_1:88088796-88088815 Msa1223600:intron 45.0%
! GATTTTGTGACCTACACTCC+AGG + chr8_1:88088809-88088828 None:intergenic 45.0%
GGAGTGTAGGTCACAAAATC+TGG - chr8_1:88088809-88088828 Msa1223600:intron 45.0%
CAAGGTCAAACCTACCTCAA+TGG + chr8_1:88088986-88089005 None:intergenic 45.0%
GCCACAAGTAATAGGGTTCA+AGG + chr8_1:88089004-88089023 None:intergenic 45.0%
TTCTTTATGGTGGTATGGGG+AGG - chr8_1:88089092-88089111 Msa1223600:intron 45.0%
TCTTTATGGTGGTATGGGGA+GGG - chr8_1:88089093-88089112 Msa1223600:intron 45.0%
! TGGAATACTAGCGGCATTGA+AGG - chr8_1:88089219-88089238 Msa1223600:intron 45.0%
! GTTGGCTTACCTTTGTCTGA+TGG - chr8_1:88089279-88089298 Msa1223600:intron 45.0%
GGACAAACATCCAAGATCAG+TGG - chr8_1:88090118-88090137 Msa1223600:intron 45.0%
ACATCCAAGATCAGTGGTTG+AGG - chr8_1:88090124-88090143 Msa1223600:intron 45.0%
AAAGCCTCAACCACTGATCT+TGG + chr8_1:88090131-88090150 None:intergenic 45.0%
TACCTTAGGAAAAGGCTCGT+AGG + chr8_1:88090231-88090250 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr8_1:88090500-88090519 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr8_1:88090501-88090520 None:intergenic 45.0%
! TCAAGCCTTATCCCACTAAG+TGG + chr8_1:88090502-88090521 None:intergenic 45.0%
TACACAGCCACAACTTACAG+CGG - chr8_1:88090748-88090767 Msa1223600:intron 45.0%
GGTTGTGAAGAGGATCAATC+TGG - chr8_1:88091075-88091094 Msa1223600:CDS 45.0%
GGCAAATCCTGCTTATCTGA+AGG - chr8_1:88091239-88091258 Msa1223600:intron 45.0%
GTCGTATCCTTCAGATAAGC+AGG + chr8_1:88091249-88091268 None:intergenic 45.0%
GTCCTCCCAGTTCAGATTAA+TGG - chr8_1:88091273-88091292 Msa1223600:CDS 45.0%
TGCCATTAATCTGAACTGGG+AGG + chr8_1:88091278-88091297 None:intergenic 45.0%
!! CAAGACAAGAGGTACCATTC+AGG - chr8_1:88091296-88091315 Msa1223600:CDS 45.0%
CAGTGGATACAGGGTAGTAA+GGG + chr8_1:88091557-88091576 None:intergenic 45.0%
TCAGTGGATACAGGGTAGTA+AGG + chr8_1:88091558-88091577 None:intergenic 45.0%
CCCCTTGATGCAGATACAAA+AGG + chr8_1:88091839-88091858 None:intergenic 45.0%
TGTTGTCCAAACCCAGATCA+TGG - chr8_1:88091924-88091943 Msa1223600:intron 45.0%
TCCAAACCCAGATCATGGTT+AGG - chr8_1:88091929-88091948 Msa1223600:intron 45.0%
GCAATGCCTAACCATGATCT+GGG + chr8_1:88091938-88091957 None:intergenic 45.0%
AGCAATGCCTAACCATGATC+TGG + chr8_1:88091939-88091958 None:intergenic 45.0%
GCATTGCTACAAATGGCTGT+AGG - chr8_1:88091951-88091970 Msa1223600:intron 45.0%
!! ATAAAGAAATAAATTAAAAA+GGG + chr8_1:88089080-88089099 None:intergenic 5.0%
! TGCTATGTTTGGAGCCAAGG+AGG - chr8_1:88087870-88087889 Msa1223600:three_prime_UTR 50.0%
TGCCAACTTGGTTGAGTCGT+CGG - chr8_1:88088281-88088300 Msa1223600:three_prime_UTR 50.0%
CGGGCAAGTATACGTATGTC+AGG + chr8_1:88088860-88088879 None:intergenic 50.0%
GTTCATGGGACCATTGAGGT+AGG - chr8_1:88088973-88088992 Msa1223600:intron 50.0%
CTTTATGGTGGTATGGGGAG+GGG - chr8_1:88089094-88089113 Msa1223600:intron 50.0%
! GAAGGCACACGATTCAACAC+TGG - chr8_1:88089503-88089522 Msa1223600:intron 50.0%
CTCGTAACAGAGAGAAGCGA+AGG + chr8_1:88090054-88090073 None:intergenic 50.0%
ATCACCATATGCGCCACACA+TGG - chr8_1:88090163-88090182 Msa1223600:intron 50.0%
! AGCCTACGAGCCTTTTCCTA+AGG - chr8_1:88090226-88090245 Msa1223600:intron 50.0%
ACTAAGTGGGGTCAGCAACA+TGG + chr8_1:88090488-88090507 None:intergenic 50.0%
ATGTTGCTGACCCCACTTAG+TGG - chr8_1:88090487-88090506 Msa1223600:intron 50.0%
TGTTGCTGACCCCACTTAGT+GGG - chr8_1:88090488-88090507 Msa1223600:intron 50.0%
TGACCCCACTTAGTGGGATA+AGG - chr8_1:88090494-88090513 Msa1223600:intron 50.0%
GGTTGAAGAAACATGCACCG+AGG - chr8_1:88091317-88091336 Msa1223600:CDS 50.0%
TGAAGAAACATGCACCGAGG+AGG - chr8_1:88091320-88091339 Msa1223600:CDS 50.0%
CAAGGGGTCTGTGATGATCT+AGG - chr8_1:88091852-88091871 Msa1223600:intron 50.0%
GGGTCTGTGATGATCTAGGA+GGG - chr8_1:88091856-88091875 Msa1223600:intron 50.0%
GGTCTGTGATGATCTAGGAG+GGG - chr8_1:88091857-88091876 Msa1223600:intron 50.0%
TCTAGGAGGGGATCTCATGA+AGG - chr8_1:88091869-88091888 Msa1223600:intron 50.0%
GCCTAACCATGATCTGGGTT+TGG + chr8_1:88091933-88091952 None:intergenic 50.0%
TGTGCTGAGCAGATCTGTGA+TGG - chr8_1:88091974-88091993 Msa1223600:intron 50.0%
TGATGTTGGCATGCATCGCA+CGG + chr8_1:88092090-88092109 None:intergenic 50.0%
AGCCGACGACTCAACCAAGT+TGG + chr8_1:88088286-88088305 None:intergenic 55.0%
ACATTGGAAGGGCTCCTTGG+TGG + chr8_1:88088463-88088482 None:intergenic 55.0%
GACACATTGGAAGGGCTCCT+TGG + chr8_1:88088466-88088485 None:intergenic 55.0%
GTGACCTACACTCCAGGGAA+AGG + chr8_1:88088803-88088822 None:intergenic 55.0%
TCAGCCATGTGTGGCGCATA+TGG + chr8_1:88090170-88090189 None:intergenic 55.0%
ATATGCGCCACACATGGCTG+AGG - chr8_1:88090169-88090188 Msa1223600:intron 55.0%
CATAGCTCCTCAGCCATGTG+TGG + chr8_1:88090179-88090198 None:intergenic 55.0%
CACACATGGCTGAGGAGCTA+TGG - chr8_1:88090177-88090196 Msa1223600:intron 55.0%
GAGGAGCTATGGTCTCGTCT+TGG - chr8_1:88090188-88090207 Msa1223600:intron 55.0%
GGGGTCTGTGATGATCTAGG+AGG - chr8_1:88091855-88091874 Msa1223600:intron 55.0%
CCTCCCCAAGGATAATCCCC+TGG + chr8_1:88088494-88088513 None:intergenic 60.0%
CCAGGGGATTATCCTTGGGG+AGG - chr8_1:88088491-88088510 Msa1223600:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 88087749 88092205 88087749 ID=Msa1223600;Name=Msa1223600
chr8_1 mRNA 88087749 88092205 88087749 ID=Msa1223600-mRNA-1;Parent=Msa1223600;Name=Msa1223600-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.83|0.85|0.85|1|1|7|723|370
chr8_1 exon 88087749 88088714 88087749 ID=Msa1223600-mRNA-1:exon:32022;Parent=Msa1223600-mRNA-1
chr8_1 exon 88089707 88089838 88089707 ID=Msa1223600-mRNA-1:exon:32021;Parent=Msa1223600-mRNA-1
chr8_1 exon 88090389 88090466 88090389 ID=Msa1223600-mRNA-1:exon:32020;Parent=Msa1223600-mRNA-1
chr8_1 exon 88090571 88090748 88090571 ID=Msa1223600-mRNA-1:exon:32019;Parent=Msa1223600-mRNA-1
chr8_1 exon 88090964 88091136 88090964 ID=Msa1223600-mRNA-1:exon:32018;Parent=Msa1223600-mRNA-1
chr8_1 exon 88091250 88091352 88091250 ID=Msa1223600-mRNA-1:exon:32017;Parent=Msa1223600-mRNA-1
chr8_1 exon 88092000 88092205 88092000 ID=Msa1223600-mRNA-1:exon:32016;Parent=Msa1223600-mRNA-1
chr8_1 CDS 88092000 88092205 88092000 ID=Msa1223600-mRNA-1:cds;Parent=Msa1223600-mRNA-1
chr8_1 CDS 88091250 88091352 88091250 ID=Msa1223600-mRNA-1:cds;Parent=Msa1223600-mRNA-1
chr8_1 CDS 88090964 88091136 88090964 ID=Msa1223600-mRNA-1:cds;Parent=Msa1223600-mRNA-1
chr8_1 CDS 88090571 88090748 88090571 ID=Msa1223600-mRNA-1:cds;Parent=Msa1223600-mRNA-1
chr8_1 CDS 88090389 88090466 88090389 ID=Msa1223600-mRNA-1:cds;Parent=Msa1223600-mRNA-1
chr8_1 CDS 88089707 88089838 88089707 ID=Msa1223600-mRNA-1:cds;Parent=Msa1223600-mRNA-1
chr8_1 CDS 88088472 88088714 88088472 ID=Msa1223600-mRNA-1:cds;Parent=Msa1223600-mRNA-1
chr8_1 three_prime_UTR 88087749 88088471 88087749 ID=Msa1223600-mRNA-1:three_prime_utr;Parent=Msa1223600-mRNA-1
Gene Sequence

>Msa1223600

ATGTTCTTTCAAGCAGGTGGACAACAAAAAGTTGATGTTACACTAAATCCTAACATCCTATGCTTGGAAGCAAACTCTTCGGCTCAGCCTAGAAGTGTAACAAGAATTTCTATTGGTAATATGCTATGTTTGGAGCCAAGGAGGAAATGCTTCTCATTACTATATCTCTCACCCAAAGAAGCTAAGAAGGAAATGCTTATCAAGGGGTTCAATATATGGCTTGTAGGGAATGAAGATGGAAATCTGATATCTGCTGATTCCACTAATATGTTAAATGAACATAATCTAGAAAGAATTTCTGAGGAAAAGGTCACAAAATCTGGAGATTCGTTTGTCCTGAAAGAAAATCCTGACATACGTATACTTGCCCGTGCCCATAAAATGAGTAAAAGCAGGGGAAATGTTGTTAATCCTGATGATGTCATTTCTGAGTATGGAGCAGATTCTCTTCGTTTATATGAAATGTTCATGGGACCATTGAGAGACTCAAAGACATGGAATACTAGCGGCATTGAAGGCGTACATCGTTTTTTAGGTAGAACTTGGAGGTTGATTGTTGGCTTACCTTTGTCTGATGGCACATTTAAGGATAGAACTGTATCCGTTGATGAGGAACCTACTATAGAACAACTTCGTTGTCTTCATAAATGCATCGCTAAGGTAACAGAGGAAATTGAAGGCACACGATTCAACACTGGAATTTCTGCAATGATGGAGTTCCTTAATGCAGCATATAAGTGGGACAAACATCCAAGATCAGTGGTTGAGGCTTTTGTTTTGCTGTTATCACCATATGCGCCACACATGGCTGAGGAGCTATGGTCTCGTCTTGGCCACACAAAATCATTAGCCTACGAGCCTTTTCCTAAGGCAAATCCTGCTTATCTGAAGGATACGACAGTAGTCCTCCCAGTTCAGATTAATGGCAAGACAAGAGGTACCATTCAGGTTGAAGAAACATGCACCGAGGAGGATGCTTTTGCATTAGCATCTAGGGATGAAAAGCTATCCAAATATTTGGATGGTCAATCTATCAGGAAGAGAATTTATGTTCCCGGCAAGATTTTGAATGTTGTTCTGGACCGTAAAAACATCAAGATTGGTGTACAGTAG

Protein sequence

>Msa1223600

MFFQAGGQQKVDVTLNPNILCLEANSSAQPRSVTRISIGNMLCLEPRRKCFSLLYLSPKEAKKEMLIKGFNIWLVGNEDGNLISADSTNMLNEHNLERISEEKVTKSGDSFVLKENPDIRILARAHKMSKSRGNVVNPDDVISEYGADSLRLYEMFMGPLRDSKTWNTSGIEGVHRFLGRTWRLIVGLPLSDGTFKDRTVSVDEEPTIEQLRCLHKCIAKVTEEIEGTRFNTGISAMMEFLNAAYKWDKHPRSVVEAFVLLLSPYAPHMAEELWSRLGHTKSLAYEPFPKANPAYLKDTTVVLPVQINGKTRGTIQVEETCTEEDAFALASRDEKLSKYLDGQSIRKRIYVPGKILNVVLDRKNIKIGVQ*