AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0663580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0663580 MtrunA17_Chr4g0001471 88.220 382 11 2 1 351 1 379 0.0 647
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0663580 AT1G73060.1 64.550 378 81 5 5 350 1 357 4.73e-167 470

Find 206 sgRNAs with CRISPR-Local

Find 474 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCATAGTAATAGCTATTA+TGG 0.126403 4_4:+2477350 Msa0663570:CDS
GGCAAGCTTGCTGCAGATTT+TGG 0.164117 4_4:-2478105 Msa0663580:three_prime_UTR
GGTGGGGACTTCAGAATTTA+AGG 0.170474 4_4:+2476894 Msa0663570:CDS
CCTCAAAGTTCGTCAAAATT+TGG 0.172842 4_4:+2478408 Msa0663570:CDS
CCATAGACAGTAACAAAATT+TGG 0.208171 4_4:-2476873 Msa0663580:three_prime_UTR
TCATTATAATCATACATATT+TGG 0.213712 4_4:+2478977 None:intergenic
TAAACAGATACACCTGATTT+AGG 0.217240 4_4:+2484382 None:intergenic
TTCTGCAAGGGCGTTGGTTC+CGG 0.218060 4_4:+2478383 Msa0663570:CDS
CTGCATGGAGGAAGCATTTA+AGG 0.231374 4_4:+2478301 Msa0663570:CDS
ATATCTCTTCTAAGATCTTT+TGG 0.250851 4_4:-2477686 Msa0663580:three_prime_UTR
CAGCAACATTTCTTCATATA+AGG 0.266428 4_4:-2483004 Msa0663580:intron
GACCCTCAACAATTCTTCTT+TGG 0.270857 4_4:+2479683 None:intergenic
ATACAGTGTGACAAACATTT+TGG 0.276062 4_4:+2478693 None:intergenic
TGAATTCGCAGTGCTGATTT+AGG 0.279676 4_4:-2480812 Msa0663580:intron
AGTGCTGATTTAGGCCTTCT+AGG 0.283454 4_4:-2480803 Msa0663580:CDS
AAAGCGGTATTGCAAATCTT+TGG 0.283496 4_4:+2480772 None:intergenic
CAGAGAAGACTTACATAGTT+AGG 0.283571 4_4:+2477932 Msa0663570:CDS
AATAAAAGTGTTGGGGTTGA+TGG 0.284314 4_4:+2480953 None:intergenic
AGGGGTCGATGAAGAAAATT+TGG 0.285665 4_4:+2477652 Msa0663570:CDS
CCCCATAATAGCTATTACTA+TGG 0.288425 4_4:-2477352 Msa0663580:three_prime_UTR
TCTGCAAGGGCGTTGGTTCC+GGG 0.297464 4_4:+2478384 Msa0663570:CDS
CCACTGTAATTGACAATATA+AGG 0.298504 4_4:+2480573 None:intergenic
AAATTTGGGGAAAACTTCTA+TGG 0.302110 4_4:-2476858 Msa0663580:three_prime_UTR
GCTTTGTCCTCGTATTTCTT+TGG 0.302301 4_4:+2479096 None:intergenic
GCCTAGAGCCATGTATTTAT+AGG 0.310323 4_4:-2478725 Msa0663580:three_prime_UTR
CATAGACAGTAACAAAATTT+GGG 0.315147 4_4:-2476872 Msa0663580:three_prime_UTR
GTGTTGTGTGGCACTGAAAT+TGG 0.317840 4_4:+2484609 None:intergenic
GTGCTCTTTGCTCTTCTGAT+TGG 0.318517 4_4:+2477378 Msa0663570:CDS
AAATTGGCTCAGCACAAATA+TGG 0.323793 4_4:+2484625 None:intergenic
TCCATAGTAATAGCTATTAT+GGG 0.333113 4_4:+2477351 Msa0663570:CDS
AATCAGGTTCTGAGGGCTTT+GGG 0.347993 4_4:-2478521 Msa0663580:three_prime_UTR
AAATCAGGTTCTGAGGGCTT+TGG 0.350213 4_4:-2478522 Msa0663580:three_prime_UTR
CAAGATTAAATAAAAGTGTT+GGG 0.358312 4_4:+2480945 None:intergenic
AATTTCTACGAAGAGGCTAT+AGG 0.362385 4_4:-2479626 Msa0663580:CDS
TCAATCAATGTCGGTTCGTC+TGG 0.370374 4_4:+2477514 Msa0663570:CDS
CTTTGGGTGGGAAGCCTAGA+AGG 0.376335 4_4:+2480789 None:intergenic
ATACAACAGTCTATGCTTCT+CGG 0.384722 4_4:+2478436 Msa0663570:CDS
TCATTGAGAGCACTGAAATC+AGG 0.395867 4_4:-2478537 Msa0663580:three_prime_UTR
ATGAACAACATCTCATCAAC+TGG 0.395916 4_4:-2477964 Msa0663580:three_prime_UTR
AAGCGGTATTGCAAATCTTT+GGG 0.399943 4_4:+2480773 None:intergenic
GTGGGAAGAAGATTCTGATT+TGG 0.401550 4_4:-2479272 Msa0663580:CDS
TTAGGATCGAAACCACGATT+TGG 0.404526 4_4:+2484400 None:intergenic
TGAAGAAGTTCTTGCTTATG+AGG 0.407718 4_4:+2478567 None:intergenic
GAAGAATTGTTGAGGGTCCT+TGG 0.409519 4_4:-2479678 Msa0663580:CDS
ATTTCTACGAAGAGGCTATA+GGG 0.409617 4_4:-2479625 Msa0663580:intron
AAGGTTGATGGCCTTACTAT+AGG 0.409941 4_4:-2482090 Msa0663580:CDS
CTTGCAGAATCATCACTTCC+CGG 0.414286 4_4:-2478369 Msa0663580:three_prime_UTR
CGGTTTGCTGCTAATCTTCG+TGG 0.417955 4_4:+2478456 Msa0663570:CDS
TTCACGGTTCTTGTTGATGA+TGG 0.422131 4_4:-2478126 Msa0663580:three_prime_UTR
TACCTCACTCATAGCTTTCA+CGG 0.425446 4_4:-2478142 Msa0663580:three_prime_UTR
TTACTCCAGTGTTCTACATT+CGG 0.425820 4_4:-2480739 Msa0663580:CDS
TCCTGCAGGGATATCATCTA+AGG 0.428313 4_4:+2482065 None:intergenic
CTTATATGAAGAAATGTTGC+TGG 0.430887 4_4:+2483005 None:intergenic
CGTGGTTTCGATCCTAAATC+AGG 0.444850 4_4:-2484394 Msa0663580:CDS
TCCATTGTTGCGAATAGAAA+CGG 0.447494 4_4:-2478251 Msa0663580:three_prime_UTR
TCATAAATCGTTCAGGTCCC+TGG 0.448130 4_4:-2479865 Msa0663580:intron
TTGCTTAAGCATCACCTGCC+AGG 0.449595 4_4:+2479847 None:intergenic
GCGAGAACTTCATAAGACTT+AGG 0.454079 4_4:+2484355 None:intergenic
GGGTGTTCAACCACTTGTAT+TGG 0.454525 4_4:-2477628 Msa0663580:three_prime_UTR
ATGGAAAACAAAACCTCTCC+AGG 0.456409 4_4:-2477333 Msa0663580:three_prime_UTR
TCAGTTGTTCAAAGCAGCTC+TGG 0.458399 4_4:-2482299 Msa0663580:CDS
CCATGTAGATGTGTTAAACT+TGG 0.461273 4_4:-2478800 Msa0663580:three_prime_UTR
GCATCATCGCTTGCTTCCTC+CGG 0.465125 4_4:+2477577 Msa0663570:CDS
GCTTGCTTCCTCCGGACCTA+AGG 0.465489 4_4:+2477585 Msa0663570:CDS
CATCTTCAAAGTCAAAATCA+AGG 0.471831 4_4:+2482007 None:intergenic
AATGAAGCCACAGGTCCTGC+AGG 0.472666 4_4:+2482051 None:intergenic
TCAAGATTAAATAAAAGTGT+TGG 0.473701 4_4:+2480944 None:intergenic
TACATTAATTAAACTGTGCA+TGG 0.475186 4_4:+2478911 None:intergenic
TTAGTAGTAGAAATTGAAGA+AGG 0.484021 4_4:+2484493 None:intergenic
TTCACCAGCTCTCTTGAACT+TGG 0.484399 4_4:-2478495 Msa0663580:three_prime_UTR
CTGACTCTTTCCCTTAGGTC+CGG 0.486118 4_4:-2477596 Msa0663580:three_prime_UTR
GACTTTGAAGATGAGAATGA+AGG 0.486387 4_4:-2481997 Msa0663580:intron
AGCGTCTGACTCTTTCCCTT+AGG 0.488363 4_4:-2477601 Msa0663580:three_prime_UTR
AATAGCAGTACACGTGAACT+TGG 0.489119 4_4:-2481748 Msa0663580:CDS
ATATAGCTGTACCAGGGTAC+TGG 0.490688 4_4:+2480538 None:intergenic
CCTCCTCTTCTTGAAGTCCA+AGG 0.491038 4_4:+2479661 None:intergenic
TGAAGAAATGTTGCTGGGCA+AGG 0.493271 4_4:+2483011 None:intergenic
AGAGAAGACTTACATAGTTA+GGG 0.493349 4_4:+2477933 Msa0663570:CDS
GAAAGCATGTAAAGAAGTTG+AGG 0.502958 4_4:+2476661 Msa0663570:CDS
TTCTTAGAAGTGCAGGTCGT+TGG 0.503758 4_4:-2481807 Msa0663580:intron
GGTTCCTCTCTTTGCTAACA+TGG 0.504157 4_4:+2477858 Msa0663570:intron
GAAGAAGGTGAAGAAGATAG+TGG 0.505084 4_4:+2484508 None:intergenic
GGCATTTGCTTTAGAAGCAG+AGG 0.505619 4_4:+2478167 Msa0663570:CDS
AATTCACATTTCTTGTATTG+TGG 0.506801 4_4:+2476689 Msa0663570:CDS
GACAATCGCAGCGGCAGCAG+TGG 0.513635 4_4:-2478608 Msa0663580:three_prime_UTR
AGTGCAACTCGCTTCACCCT+TGG 0.516086 4_4:-2479794 Msa0663580:CDS
TTTGTTTGAATTTAGTCAGA+AGG 0.518058 4_4:+2477720 Msa0663570:CDS
TCCTTAGATGATATCCCTGC+AGG 0.518676 4_4:-2482066 Msa0663580:CDS
ATTCGCAACAATGGAGAACA+TGG 0.522904 4_4:+2478259 Msa0663570:CDS
GACGAACCGACATTGATTGA+AGG 0.524267 4_4:-2477511 Msa0663580:three_prime_UTR
TGGAGGAAATGAGGATCAAA+AGG 0.526808 4_4:+2477534 Msa0663570:CDS
TCCGTTTCTATTCGCAACAA+TGG 0.528384 4_4:+2478250 Msa0663570:CDS
GTATTTGTCAGCTGCAGTGT+TGG 0.529453 4_4:+2478667 None:intergenic
GGAAGAAAAGTGAGGTTGTG+AGG 0.531314 4_4:+2484544 None:intergenic
GATAGTGGAGAAAGATGTGA+AGG 0.532078 4_4:+2484523 None:intergenic
AGAGTTGCTAACATGGGCAT+TGG 0.533440 4_4:+2478080 Msa0663570:CDS
TGATGATTCTGCAAGGGCGT+TGG 0.534637 4_4:+2478377 Msa0663570:CDS
TTTCACAGTACACTTGGTCA+GGG 0.537219 4_4:+2477291 Msa0663570:intron
GAAAGCTATGAGTGAGGTAG+AGG 0.537681 4_4:+2478146 Msa0663570:CDS
GAGATGTTGTTCATCATTCG+TGG 0.539150 4_4:+2477973 Msa0663570:CDS
CTAGAGAGTGTTACTACAGA+TGG 0.541421 4_4:+2478000 Msa0663570:CDS
AGTTCAAGTAAGCATATACC+AGG 0.542819 4_4:+2476713 Msa0663570:CDS
GTCTTCTCTGTATATAAACT+CGG 0.543647 4_4:-2477919 Msa0663580:three_prime_UTR
TAGACACATACATAGTAGAC+AGG 0.544177 4_4:+2478215 Msa0663570:CDS
ACATTAATTAAACTGTGCAT+GGG 0.546350 4_4:+2478912 None:intergenic
ATCAATGTCGGTTCGTCTGG+AGG 0.548219 4_4:+2477517 Msa0663570:CDS
CATCTAAGGAGCCTATAGTA+AGG 0.549669 4_4:+2482079 None:intergenic
CGGTATTGCAAATCTTTGGG+TGG 0.549941 4_4:+2480776 None:intergenic
CAACACAATGCTACTATCCA+TGG 0.551674 4_4:-2484587 Msa0663580:exon
TTGTTTGAATTTAGTCAGAA+GGG 0.551796 4_4:+2477721 Msa0663570:CDS
GCACTGAAATCAGGTTCTGA+GGG 0.551873 4_4:-2478528 Msa0663580:three_prime_UTR
AGAAGTGGCTTCTTCAACAG+AGG 0.551875 4_4:+2478027 Msa0663570:CDS
CTTGCTTCCTCCGGACCTAA+GGG 0.552988 4_4:+2477586 Msa0663570:CDS
AGCACTGAAATCAGGTTCTG+AGG 0.553944 4_4:-2478529 Msa0663580:three_prime_UTR
AAATCGTTCAGGTCCCTGGC+AGG 0.556462 4_4:-2479861 Msa0663580:intron
TTTGACGAACTTTGAGGACC+CGG 0.557037 4_4:-2478402 Msa0663580:three_prime_UTR
AAAGCATGTAAAGAAGTTGA+GGG 0.558423 4_4:+2476662 Msa0663570:CDS
TTGCAGAATCATCACTTCCC+GGG 0.558557 4_4:-2478368 Msa0663580:three_prime_UTR
TGCTTAAGCATCACCTGCCA+GGG 0.558854 4_4:+2479848 None:intergenic
GCCTATAAATACATGGCTCT+AGG 0.559293 4_4:+2478724 None:intergenic
TACAAATAGTGTCATGCTGA+AGG 0.559604 4_4:-2478630 Msa0663580:three_prime_UTR
GAAGAAATGTTGCTGGGCAA+GGG 0.561828 4_4:+2483012 None:intergenic
CGGTTCGTCTGGAGGAAATG+AGG 0.562037 4_4:+2477525 Msa0663570:CDS
GGCCAAAGAAGAATTGTTGA+GGG 0.563652 4_4:-2479685 Msa0663580:CDS
TGGTTATATTGAGAAGTATG+TGG 0.564545 4_4:-2481728 Msa0663580:intron
AGTACCAAGTTCAAGAGAGC+TGG 0.565279 4_4:+2478491 Msa0663570:CDS
TCTTCTGATTGGAAACATGC+AGG 0.565687 4_4:+2477389 Msa0663570:CDS
ACTACAGATGGTGGAAGAAG+TGG 0.567107 4_4:+2478012 Msa0663570:CDS
TTATATGAAGAAATGTTGCT+GGG 0.572669 4_4:+2483006 None:intergenic
AAGATTAAATAAAAGTGTTG+GGG 0.574401 4_4:+2480946 None:intergenic
TTCACAGTACACTTGGTCAG+GGG 0.577586 4_4:+2477292 Msa0663570:intron
CCAAGTTTAACACATCTACA+TGG 0.577774 4_4:+2478800 None:intergenic
TGCTCATATGCAGAGAAAGA+AGG 0.579598 4_4:-2479169 Msa0663580:three_prime_UTR
TTTAAGGCGAAGGCGAAGGA+AGG 0.579780 4_4:+2478317 Msa0663570:CDS
GCTGTGTTTCGCCAGTACCC+TGG 0.579836 4_4:-2480549 Msa0663580:intron
CCATAGTAATAGCTATTATG+GGG 0.581237 4_4:+2477352 Msa0663570:CDS
TTAATGAATATGTAGAGCGA+TGG 0.581715 4_4:+2481769 None:intergenic
ATGAATATGTAGAGCGATGG+AGG 0.586924 4_4:+2481772 None:intergenic
AGCATTTAAGGCGAAGGCGA+AGG 0.589667 4_4:+2478313 Msa0663570:CDS
TCTCTAGAATTTCTACGAAG+AGG 0.589731 4_4:-2479633 Msa0663580:CDS
CCTCTAGCAATGTTCTACTC+AGG 0.589927 4_4:+2479228 None:intergenic
ATTGCAGTCAAGCACGTGGT+GGG 0.590052 4_4:-2479290 Msa0663580:intron
CTGATCCGAATGTAGAACAC+TGG 0.590070 4_4:+2480734 None:intergenic
CAATCTATATTCAAGCTGCA+TGG 0.590954 4_4:+2478286 Msa0663570:CDS
GGAGGAAGCATTTAAGGCGA+AGG 0.591557 4_4:+2478307 Msa0663570:CDS
AATGCTACTATCCATGGCTA+TGG 0.594263 4_4:-2484581 Msa0663580:CDS
ATATTACGAATCTGATTACC+CGG 0.594747 4_4:+2478350 Msa0663570:CDS
GGTATTGCAAATCTTTGGGT+GGG 0.594858 4_4:+2480777 None:intergenic
TAGCATTGTGTTGTGTTGTG+TGG 0.596955 4_4:+2484597 None:intergenic
GCGATGATGCATCCACTGCT+CGG 0.598686 4_4:-2477564 Msa0663580:three_prime_UTR
CCTTGGACTTCAAGAAGAGG+AGG 0.602803 4_4:-2479661 Msa0663580:CDS
ATCTTCAAAGTCAAAATCAA+GGG 0.605002 4_4:+2482008 None:intergenic
ATATACCAGGGTATGACAGT+TGG 0.606713 4_4:+2476726 Msa0663570:CDS
GACTAGTACCTACCCTGGAG+AGG 0.607375 4_4:+2477320 Msa0663570:CDS
CCTTATATTGTCAATTACAG+TGG 0.607987 4_4:-2480573 Msa0663580:CDS
TGATATCCCTGCAGGACCTG+TGG 0.610302 4_4:-2482058 Msa0663580:CDS
ATCTTGAGCTAGATACACTA+CGG 0.610940 4_4:-2480928 Msa0663580:intron
AGGCCAAAGAAGAATTGTTG+AGG 0.612770 4_4:-2479686 Msa0663580:CDS
GAGAGTGTTACTACAGATGG+TGG 0.613056 4_4:+2478003 Msa0663570:CDS
GACCTACCTTCAATCAATGT+CGG 0.613772 4_4:+2477505 Msa0663570:intron
AAGGCGAAGGCGAAGGAAGG+AGG 0.615424 4_4:+2478320 Msa0663570:CDS
ACTCTTTCCCTTAGGTCCGG+AGG 0.617015 4_4:-2477593 Msa0663580:three_prime_UTR
AGATGACATAGCCATAGCCA+TGG 0.621508 4_4:+2484570 None:intergenic
AAAGGCGTGACTCCGAGCAG+TGG 0.621729 4_4:+2477552 Msa0663570:CDS
TCATGAACTTACTTCACCAA+GGG 0.622484 4_4:+2479778 None:intergenic
AAACAAAACCTCTCCAGGGT+AGG 0.625990 4_4:-2477328 Msa0663580:three_prime_UTR
GTGGTGAAGAGTTGCTAACA+TGG 0.626286 4_4:+2478073 Msa0663570:CDS
CGGGAAGTGATGATTCTGCA+AGG 0.626896 4_4:+2478370 Msa0663570:CDS
AAGACTTACATAGTTAGGGA+AGG 0.629987 4_4:+2477937 Msa0663570:CDS
ATGAAGCCACAGGTCCTGCA+GGG 0.630187 4_4:+2482052 None:intergenic
TACAAGTGGTTGAACACCCG+AGG 0.630986 4_4:+2477632 Msa0663570:CDS
ATTTGGAAGTATCATCTGCA+TGG 0.634373 4_4:-2479255 Msa0663580:CDS
TCTTCATCAGAGCCAAATCG+TGG 0.636063 4_4:-2484412 Msa0663580:CDS
GTGGTTAGCCTATAAATACA+TGG 0.636389 4_4:+2478717 None:intergenic
GACGCTACGACCAATACAAG+TGG 0.637852 4_4:+2477618 Msa0663570:CDS
CATTAATTAAACTGTGCATG+GGG 0.637978 4_4:+2478913 None:intergenic
TACACAAGCATAAGAACCAT+CGG 0.638469 4_4:+2479823 None:intergenic
TATTGCAGTCAAGCACGTGG+TGG 0.640120 4_4:-2479291 Msa0663580:intron
TTCATGAACTTACTTCACCA+AGG 0.640836 4_4:+2479777 None:intergenic
GTGATGCTTAAGCAAACCGA+TGG 0.643172 4_4:-2479839 Msa0663580:CDS
TGGAAAACAAAACCTCTCCA+GGG 0.644846 4_4:-2477332 Msa0663580:three_prime_UTR
TCGTCCATGTTAGCAAAGAG+AGG 0.645418 4_4:-2477862 Msa0663580:three_prime_UTR
GGGAAGTGATGATTCTGCAA+GGG 0.645571 4_4:+2478371 Msa0663570:CDS
GAGTAAATTGAGAAAGAAAG+CGG 0.647482 4_4:+2480756 None:intergenic
GGTCCTTGGACTTCAAGAAG+AGG 0.649587 4_4:-2479664 Msa0663580:CDS
TTTCTCCAACTGTCATACCC+TGG 0.659364 4_4:-2476731 Msa0663580:three_prime_UTR
TCGGATCAGAGATTATTCAA+AGG 0.660666 4_4:-2480720 Msa0663580:intron
CTTGGACTTCAAGAAGAGGA+GGG 0.667611 4_4:-2479660 Msa0663580:CDS
ATAGACAGTAACAAAATTTG+GGG 0.668163 4_4:-2476871 Msa0663580:three_prime_UTR
CTTCTGACTAGTACCTACCC+TGG 0.672528 4_4:+2477315 Msa0663570:CDS
CCTGAGTAGAACATTGCTAG+AGG 0.675597 4_4:-2479228 Msa0663580:exon
ACAAGTGGTTGAACACCCGA+GGG 0.676415 4_4:+2477633 Msa0663570:CDS
AACCGTGAAAGCTATGAGTG+AGG 0.683734 4_4:+2478140 Msa0663570:CDS
TTCGCAACAATGGAGAACAT+GGG 0.684012 4_4:+2478260 Msa0663570:CDS
GATGTGAAGGAAGAAAAGTG+AGG 0.687118 4_4:+2484536 None:intergenic
AGCTGCTTTGAACAACTGAG+AGG 0.692149 4_4:+2482303 None:intergenic
GAGTAGAACATTGCTAGAGG+AGG 0.693732 4_4:-2479225 Msa0663580:three_prime_UTR
TGGTGAAGAGTTGCTAACAT+GGG 0.697702 4_4:+2478074 Msa0663570:CDS
TATTACGAATCTGATTACCC+GGG 0.702346 4_4:+2478351 Msa0663570:CDS
AACCGACATTGATTGAAGGT+AGG 0.702813 4_4:-2477507 Msa0663580:three_prime_UTR
TCTATATTCAAGCTGCATGG+AGG 0.707083 4_4:+2478289 Msa0663570:CDS
TGGAAGTATCATCTGCATGG+CGG 0.725682 4_4:-2479252 Msa0663580:CDS
TGATATTGCAGTCAAGCACG+TGG 0.735833 4_4:-2479294 Msa0663580:intron
ATGCTGAAGGACAATCGCAG+CGG 0.746460 4_4:-2478617 Msa0663580:three_prime_UTR
GTTCAAGTAAGCATATACCA+GGG 0.749555 4_4:+2476714 Msa0663570:CDS
CAAGTGGTTGAACACCCGAG+GGG 0.768003 4_4:+2477634 Msa0663570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAAGCAAATTTAAAAT+CGG - chr4_4:2477678-2477697 Msa0663580:three_prime_UTR 10.0%
!! TATTATTCAATATTTATCTA+TGG - chr4_4:2478101-2478120 Msa0663580:three_prime_UTR 10.0%
!!! ATTTTAACAAATTTTCATTA+TGG - chr4_4:2478520-2478539 Msa0663580:three_prime_UTR 10.0%
!!! ATCTAAAATTCTATAAATTA+TGG - chr4_4:2484169-2484188 Msa0663580:intron 10.0%
!!! AATTTGAAACTATATTTGTA+GGG - chr4_4:2477541-2477560 Msa0663580:three_prime_UTR 15.0%
!! TAATTTATCCTACTAATATT+TGG + chr4_4:2478450-2478469 Msa0663570:CDS 15.0%
!! ATACATCAAATTAAATAACT+AGG + chr4_4:2480293-2480312 None:intergenic 15.0%
!!! ATATTTTCTCAAATAATATG+AGG - chr4_4:2480666-2480685 Msa0663580:intron 15.0%
!! CGATTTATGAAAAATATTTA+GGG + chr4_4:2481430-2481449 None:intergenic 15.0%
!! ACGATTTATGAAAAATATTT+AGG + chr4_4:2481431-2481450 None:intergenic 15.0%
!!! TATAAATATTTTAAGAAGGT+TGG + chr4_4:2481887-2481906 None:intergenic 15.0%
!!! CTTGTATAAATATTTTAAGA+AGG + chr4_4:2481891-2481910 None:intergenic 15.0%
!! TTTAAAAGAAAAAACTATGT+AGG + chr4_4:2482167-2482186 None:intergenic 15.0%
!! TCATTATAATCATACATATT+TGG + chr4_4:2482331-2482350 None:intergenic 15.0%
!! ATATTTATAAAGGATGATAT+AGG - chr4_4:2484120-2484139 Msa0663580:intron 15.0%
!! AAATATATATGTATTAGTGT+CGG + chr4_4:2484291-2484310 None:intergenic 15.0%
!!! TTGCTATTTTCTCAAATTTT+CGG + chr4_4:2477305-2477324 Msa0663570:CDS 20.0%
!! TCTTGATATTGTGAAATTTA+TGG - chr4_4:2477447-2477466 Msa0663580:intron 20.0%
!! TTGTGAAATTTATGGATAAA+TGG - chr4_4:2477455-2477474 Msa0663580:intron 20.0%
!!! CAATTTGAAACTATATTTGT+AGG - chr4_4:2477540-2477559 Msa0663580:three_prime_UTR 20.0%
!! GTAATTAAAAGGAGATTATT+TGG - chr4_4:2477960-2477979 Msa0663580:three_prime_UTR 20.0%
!! TTCAATATTTATCTATGGAA+AGG - chr4_4:2478106-2478125 Msa0663580:three_prime_UTR 20.0%
!! AGAAAAAATGTTGAAAATGT+AGG + chr4_4:2478145-2478164 Msa0663570:CDS 20.0%
!!! TAATAACAATATTTTGCTTG+CGG - chr4_4:2478212-2478231 Msa0663580:three_prime_UTR 20.0%
!!! TGAATTATTTGTTTCAGTTT+TGG - chr4_4:2478366-2478385 Msa0663580:three_prime_UTR 20.0%
!!! TGAAAATTTGTTAAAATCCA+TGG + chr4_4:2478517-2478536 Msa0663570:CDS 20.0%
!! TCAAATTCCTAAATATTTCA+AGG - chr4_4:2478741-2478760 Msa0663580:three_prime_UTR 20.0%
!! CAAATTCCTAAATATTTCAA+GGG - chr4_4:2478742-2478761 Msa0663580:three_prime_UTR 20.0%
!!! GAATATTCTTATTTACTATG+AGG - chr4_4:2479053-2479072 Msa0663580:three_prime_UTR 20.0%
!! TATGATATCTTCATTCTTTA+TGG + chr4_4:2479146-2479165 None:intergenic 20.0%
!!! TTCATCTTTATTTTGTTTCA+AGG - chr4_4:2479196-2479215 Msa0663580:three_prime_UTR 20.0%
!!! AAATTTTTCTTGAGTCATAT+TGG - chr4_4:2479417-2479436 Msa0663580:intron 20.0%
!!! AAAATCATGAAACCTTTTAA+TGG + chr4_4:2479616-2479635 None:intergenic 20.0%
!!! TTCATGATTTTTTATCTGTT+CGG - chr4_4:2479625-2479644 Msa0663580:intron 20.0%
!! ATTCTCGAATTAGAAATATA+GGG + chr4_4:2480001-2480020 None:intergenic 20.0%
!! TAAATAGTAAAACTTGATGT+AGG - chr4_4:2480159-2480178 Msa0663580:intron 20.0%
!!! AAGATTAAATAAAAGTGTTG+GGG + chr4_4:2480362-2480381 None:intergenic 20.0%
!!! CAAGATTAAATAAAAGTGTT+GGG + chr4_4:2480363-2480382 None:intergenic 20.0%
!!! TCAAGATTAAATAAAAGTGT+TGG + chr4_4:2480364-2480383 None:intergenic 20.0%
!!! TTGTACTCTTTTTTGTTTAT+TGG - chr4_4:2480406-2480425 Msa0663580:intron 20.0%
!! CAGATAATGATAAATATCTA+GGG + chr4_4:2480634-2480653 None:intergenic 20.0%
!! TCAGATAATGATAAATATCT+AGG + chr4_4:2480635-2480654 None:intergenic 20.0%
!! TCAAATTGTCAATATGAAAA+AGG - chr4_4:2481270-2481289 Msa0663580:intron 20.0%
!! CAAATTGTCAATATGAAAAA+GGG - chr4_4:2481271-2481290 Msa0663580:intron 20.0%
!! ATTCATTTGTGTAATGAATT+TGG - chr4_4:2481305-2481324 Msa0663580:intron 20.0%
!! ATAAAAAAAAACTAGCTATC+TGG + chr4_4:2481358-2481377 None:intergenic 20.0%
!!! ATATTTTTCATAAATCGTTC+AGG - chr4_4:2481433-2481452 Msa0663580:intron 20.0%
!! ATACCTTATCTAATATCTAT+TGG - chr4_4:2481589-2481608 Msa0663580:intron 20.0%
!!! ATGTGTAAATTTTACATAAG+AGG + chr4_4:2481798-2481817 None:intergenic 20.0%
!! ATAGGATCATAAATCATATT+TGG - chr4_4:2481946-2481965 Msa0663580:intron 20.0%
!! ATGTTTACAGTAAAAACTTT+CGG - chr4_4:2483889-2483908 Msa0663580:intron 20.0%
!! GAATCAAAGCATATTTATAA+AGG - chr4_4:2484110-2484129 Msa0663580:intron 20.0%
!!! TTATAAACTGAGTGTTTTAT+AGG - chr4_4:2484328-2484347 Msa0663580:CDS 20.0%
! TTAGTAGTAGAAATTGAAGA+AGG + chr4_4:2476815-2476834 Msa0663570:CDS 25.0%
! AGAATGAATAATAAACGTAC+GGG + chr4_4:2477042-2477061 Msa0663570:intron 25.0%
! GAGAATGAATAATAAACGTA+CGG + chr4_4:2477043-2477062 Msa0663570:intron 25.0%
! TATTCATTAATTGACTGATG+TGG + chr4_4:2477224-2477243 Msa0663570:intron 25.0%
! AACTATATTTGTAGGGAATT+TGG - chr4_4:2477548-2477567 Msa0663580:three_prime_UTR 25.0%
! TCAATATTTGAATCCAACAT+TGG - chr4_4:2477625-2477644 Msa0663580:three_prime_UTR 25.0%
!!! TAGTTGCTTTGCTATTATTA+TGG - chr4_4:2477791-2477810 Msa0663580:intron 25.0%
! TGTATTCCAAATTACTTGTT+TGG - chr4_4:2477863-2477882 Msa0663580:three_prime_UTR 25.0%
! AAAGATCCAAACAAGTAATT+TGG + chr4_4:2477872-2477891 Msa0663570:CDS 25.0%
!!! TAGAGAATCTATTTTTGTGT+AGG + chr4_4:2477897-2477916 Msa0663570:CDS 25.0%
! GGGACATAATAGTAATTAAA+AGG - chr4_4:2477949-2477968 Msa0663580:three_prime_UTR 25.0%
! TTTGGTTGAGAGATAATATT+TGG - chr4_4:2477978-2477997 Msa0663580:three_prime_UTR 25.0%
! TTATATGAAGAAATGTTGCT+GGG + chr4_4:2478302-2478321 Msa0663570:CDS 25.0%
!! TGTATATAGGTCTATGTTTT+TGG - chr4_4:2478397-2478416 Msa0663580:three_prime_UTR 25.0%
! ACAAAGTTCCAAATATTAGT+AGG - chr4_4:2478439-2478458 Msa0663580:three_prime_UTR 25.0%
! TTAAAATCCATGGTAAACAA+AGG + chr4_4:2478507-2478526 Msa0663570:CDS 25.0%
!! ATATTTTGCTAATCAGAAGT+AGG + chr4_4:2478571-2478590 None:intergenic 25.0%
!!! TTATTTTGTTTCAAGGTTGA+TGG - chr4_4:2479203-2479222 Msa0663580:three_prime_UTR 25.0%
! ATCTTCAAAGTCAAAATCAA+GGG + chr4_4:2479300-2479319 None:intergenic 25.0%
! TAATGCATAAGTTTCAAACA+TGG + chr4_4:2479390-2479409 None:intergenic 25.0%
!! ATTAAATTTCTTAGAAGTGC+AGG - chr4_4:2479491-2479510 Msa0663580:intron 25.0%
!!! GTTCTTTCATTTGTTGTTTT+TGG - chr4_4:2479776-2479795 Msa0663580:intron 25.0%
! TAGTATGATTATATTCCCTT+GGG + chr4_4:2479925-2479944 None:intergenic 25.0%
! TTAGTATGATTATATTCCCT+TGG + chr4_4:2479926-2479945 None:intergenic 25.0%
! TTCTCGAATTAGAAATATAG+GGG + chr4_4:2480000-2480019 None:intergenic 25.0%
! CATTCTCGAATTAGAAATAT+AGG + chr4_4:2480002-2480021 None:intergenic 25.0%
!! TTATATTGTGCTATTGGTAA+TGG + chr4_4:2480036-2480055 None:intergenic 25.0%
!! TTTGGTTTATATTGTGCTAT+TGG + chr4_4:2480042-2480061 None:intergenic 25.0%
!! TCAAGTTTTACTATTTACTG+CGG + chr4_4:2480156-2480175 None:intergenic 25.0%
! GAAATGTGAGTTTCTTAATA+TGG - chr4_4:2480215-2480234 Msa0663580:intron 25.0%
!! TTCTATTACTACTATTTTGC+AGG - chr4_4:2480318-2480337 Msa0663580:intron 25.0%
! ATAAATATATAGCTGTACCA+GGG + chr4_4:2480776-2480795 None:intergenic 25.0%
! TATAAATATATAGCTGTACC+AGG + chr4_4:2480777-2480796 None:intergenic 25.0%
! ATCATGTATCACAGATTATT+AGG + chr4_4:2480858-2480877 None:intergenic 25.0%
! TGTTAATATTAGATAACTGG+TGG + chr4_4:2480985-2481004 None:intergenic 25.0%
!! TGGTGTTAATATTAGATAAC+TGG + chr4_4:2480988-2481007 None:intergenic 25.0%
! TCAGTATATGTAACAACAAT+AGG - chr4_4:2481027-2481046 Msa0663580:intron 25.0%
! AATGAGAAATAGAGGAAATA+TGG + chr4_4:2481131-2481150 None:intergenic 25.0%
! CACAAAGAATTATCAAAATC+TGG - chr4_4:2481185-2481204 Msa0663580:intron 25.0%
! AGATAATATGCAATAAGGTA+AGG + chr4_4:2481220-2481239 None:intergenic 25.0%
! GATACAGATAATATGCAATA+AGG + chr4_4:2481225-2481244 None:intergenic 25.0%
!! ATTGGCAAATAAAAGCATAT+TGG + chr4_4:2481394-2481413 None:intergenic 25.0%
! TCACAGTTAGTAAGAAAATA+AGG + chr4_4:2481559-2481578 None:intergenic 25.0%
! AAGCCAATAGATATTAGATA+AGG + chr4_4:2481595-2481614 None:intergenic 25.0%
! TTATTTCAACCATAGCAAAA+AGG + chr4_4:2481755-2481774 None:intergenic 25.0%
!! AGCCAAATTTTCATTATAGT+GGG - chr4_4:2481918-2481937 Msa0663580:intron 25.0%
! AACCCACTATAATGAAAATT+TGG + chr4_4:2481923-2481942 None:intergenic 25.0%
!!! TCATTATAGTGGGTTATTAT+AGG - chr4_4:2481928-2481947 Msa0663580:intron 25.0%
! ACATTAATTAAACTGTGCAT+GGG + chr4_4:2482396-2482415 None:intergenic 25.0%
! TACATTAATTAAACTGTGCA+TGG + chr4_4:2482397-2482416 None:intergenic 25.0%
! GTGTATGACATATATTATTC+AGG + chr4_4:2483471-2483490 None:intergenic 25.0%
! TGAGAAAATAAAGAGTTAGA+AGG - chr4_4:2483501-2483520 Msa0663580:intron 25.0%
! TTGTTTGAATTTAGTCAGAA+GGG + chr4_4:2483587-2483606 None:intergenic 25.0%
! TTTGTTTGAATTTAGTCAGA+AGG + chr4_4:2483588-2483607 None:intergenic 25.0%
!!! ATATCTCTTCTAAGATCTTT+TGG - chr4_4:2483619-2483638 Msa0663580:intron 25.0%
! TCCATAGTAATAGCTATTAT+GGG + chr4_4:2483957-2483976 None:intergenic 25.0%
! TTCCATAGTAATAGCTATTA+TGG + chr4_4:2483958-2483977 None:intergenic 25.0%
!!! GTTTTATAGGTGTTATAAAG+AGG - chr4_4:2484341-2484360 Msa0663580:CDS 25.0%
! CATAGACAGTAACAAAATTT+GGG - chr4_4:2484433-2484452 Msa0663580:CDS 25.0%
! ATAGACAGTAACAAAATTTG+GGG - chr4_4:2484434-2484453 Msa0663580:CDS 25.0%
! AATTCACATTTCTTGTATTG+TGG + chr4_4:2484619-2484638 None:intergenic 25.0%
! TGATGAAGAAGCTTCTTTTT+CGG + chr4_4:2476882-2476901 Msa0663570:CDS 30.0%
TAAACAGATACACCTGATTT+AGG + chr4_4:2476926-2476945 Msa0663570:intron 30.0%
GAGTGTATGTAGTTTATGTT+TGG - chr4_4:2477104-2477123 Msa0663580:intron 30.0%
GTTCTATGTAGTACATATCA+CGG + chr4_4:2477404-2477423 Msa0663570:intron 30.0%
!! TAGAACTAGTCTTATCACTA+TGG - chr4_4:2477418-2477437 Msa0663580:intron 30.0%
CTGTCAAAATCTTTATGTTG+CGG - chr4_4:2477498-2477517 Msa0663580:intron 30.0%
GGATTCAAATATTGATCAAC+TGG + chr4_4:2477620-2477639 Msa0663570:CDS 30.0%
! AAATTTAAAATCGGAGCTGT+TGG - chr4_4:2477687-2477706 Msa0663580:three_prime_UTR 30.0%
! AATTTAAAATCGGAGCTGTT+GGG - chr4_4:2477688-2477707 Msa0663580:three_prime_UTR 30.0%
! TTGCTATTATTATGGATGCA+TGG - chr4_4:2477799-2477818 Msa0663580:intron 30.0%
CTAAAGTCACCAAATATCAA+CGG + chr4_4:2477920-2477939 Msa0663570:CDS 30.0%
CAAAATGTAGACAATCGAAA+GGG - chr4_4:2478028-2478047 Msa0663580:three_prime_UTR 30.0%
AGGAACAAAAAAGATCAGAA+TGG + chr4_4:2478256-2478275 Msa0663570:CDS 30.0%
!!! ATTCTGATCTTTTTTGTTCC+TGG - chr4_4:2478255-2478274 Msa0663580:three_prime_UTR 30.0%
!!! TTCTGATCTTTTTTGTTCCT+GGG - chr4_4:2478256-2478275 Msa0663580:three_prime_UTR 30.0%
CTTATATGAAGAAATGTTGC+TGG + chr4_4:2478303-2478322 Msa0663570:CDS 30.0%
CAGCAACATTTCTTCATATA+AGG - chr4_4:2478301-2478320 Msa0663580:three_prime_UTR 30.0%
TTTGGTCCTTCATTGTATAT+AGG - chr4_4:2478384-2478403 Msa0663580:three_prime_UTR 30.0%
CATAGACCTATATACAATGA+AGG + chr4_4:2478393-2478412 Msa0663570:CDS 30.0%
TTGTAGCTAAGCTAATATGA+TGG - chr4_4:2478619-2478638 Msa0663580:three_prime_UTR 30.0%
TGTAGCTAAGCTAATATGAT+GGG - chr4_4:2478620-2478639 Msa0663580:three_prime_UTR 30.0%
GAAGATCCCTTGAAATATTT+AGG + chr4_4:2478751-2478770 None:intergenic 30.0%
!!! TAGATTTGGGACTTTTTTGT+AGG - chr4_4:2478949-2478968 Msa0663580:three_prime_UTR 30.0%
! CCAATAGTGTGATCATTTTA+TGG + chr4_4:2479096-2479115 None:intergenic 30.0%
CCATAAAATGATCACACTAT+TGG - chr4_4:2479093-2479112 Msa0663580:three_prime_UTR 30.0%
ATGAAACTTCAGAATATGAC+AGG + chr4_4:2479181-2479200 None:intergenic 30.0%
CATCTTCAAAGTCAAAATCA+AGG + chr4_4:2479301-2479320 None:intergenic 30.0%
TTAATGAATATGTAGAGCGA+TGG + chr4_4:2479539-2479558 None:intergenic 30.0%
! TGGTTATATTGAGAAGTATG+TGG - chr4_4:2479577-2479596 Msa0663580:intron 30.0%
! ATATTGAGAAGTATGTGGTA+TGG - chr4_4:2479582-2479601 Msa0663580:intron 30.0%
CATTCTTATCTGTATTAGCT+TGG - chr4_4:2479678-2479697 Msa0663580:CDS 30.0%
!!! GACGTTTATTTTTTCTCCAT+TGG - chr4_4:2479721-2479740 Msa0663580:intron 30.0%
TGCACATTATTTATCACCAA+TGG + chr4_4:2479740-2479759 None:intergenic 30.0%
AATTTATACTGTCAAACCCA+AGG - chr4_4:2479906-2479925 Msa0663580:intron 30.0%
ATTTATACTGTCAAACCCAA+GGG - chr4_4:2479907-2479926 Msa0663580:intron 30.0%
! ACAGGGATTATTCTTTCTTT+TGG + chr4_4:2480060-2480079 None:intergenic 30.0%
TTCAGTATAATACAGCTGTA+GGG + chr4_4:2480083-2480102 None:intergenic 30.0%
GAGTAAATTGAGAAAGAAAG+CGG + chr4_4:2480552-2480571 None:intergenic 30.0%
CCACTGTAATTGACAATATA+AGG + chr4_4:2480735-2480754 None:intergenic 30.0%
CCTTATATTGTCAATTACAG+TGG - chr4_4:2480732-2480751 Msa0663580:CDS 30.0%
GAGAAGTTGTGTTAAAAGAA+AGG - chr4_4:2480935-2480954 Msa0663580:CDS 30.0%
ATTGTCAATATGAAAAAGGG+AGG - chr4_4:2481274-2481293 Msa0663580:intron 30.0%
! TAGGGCATCATTCATATAAT+TGG + chr4_4:2481412-2481431 None:intergenic 30.0%
!! TAATATCTATTGGCTTGTCT+AGG - chr4_4:2481599-2481618 Msa0663580:intron 30.0%
GTAAAATTTACACATTCCTG+TGG - chr4_4:2481803-2481822 Msa0663580:intron 30.0%
GCACATTAGGGAATATAATT+GGG + chr4_4:2481857-2481876 None:intergenic 30.0%
TGCACATTAGGGAATATAAT+TGG + chr4_4:2481858-2481877 None:intergenic 30.0%
GTTGGTATTTATGCACATTA+GGG + chr4_4:2481869-2481888 None:intergenic 30.0%
! GAGCCAAATTTTCATTATAG+TGG - chr4_4:2481917-2481936 Msa0663580:intron 30.0%
!! GTTGGTAACAGATTTAAAAC+TGG + chr4_4:2481985-2482004 None:intergenic 30.0%
CATTAATTAAACTGTGCATG+GGG + chr4_4:2482395-2482414 None:intergenic 30.0%
! ATACAGTGTGACAAACATTT+TGG + chr4_4:2482615-2482634 None:intergenic 30.0%
ATATTACGAATCTGATTACC+CGG + chr4_4:2482958-2482977 None:intergenic 30.0%
AGAGAAGACTTACATAGTTA+GGG + chr4_4:2483375-2483394 None:intergenic 30.0%
GTCTTCTCTGTATATAAACT+CGG - chr4_4:2483386-2483405 Msa0663580:intron 30.0%
CCTTGTGTTATAAATGCAAT+TGG + chr4_4:2483829-2483848 None:intergenic 30.0%
CCAATTGCATTTATAACACA+AGG - chr4_4:2483826-2483845 Msa0663580:intron 30.0%
CCATAGTAATAGCTATTATG+GGG + chr4_4:2483956-2483975 None:intergenic 30.0%
AAGCAAAACAGAAGGATATT+TGG - chr4_4:2484036-2484055 Msa0663580:intron 30.0%
TTGTAGATTCACTTGATGTT+GGG + chr4_4:2484150-2484169 None:intergenic 30.0%
ATTGTAGATTCACTTGATGT+TGG + chr4_4:2484151-2484170 None:intergenic 30.0%
TCTGATCTTCATATCAAAGT+CGG + chr4_4:2484214-2484233 None:intergenic 30.0%
ATGGCTAATGTGAAAAACAT+AGG - chr4_4:2484262-2484281 Msa0663580:intron 30.0%
! ATTTTGTTACTGTCTATGGT+GGG + chr4_4:2484431-2484450 None:intergenic 30.0%
! AATTTTGTTACTGTCTATGG+TGG + chr4_4:2484432-2484451 None:intergenic 30.0%
! CCAAATTTTGTTACTGTCTA+TGG + chr4_4:2484435-2484454 None:intergenic 30.0%
CCATAGACAGTAACAAAATT+TGG - chr4_4:2484432-2484451 Msa0663580:CDS 30.0%
AAATTTGGGGAAAACTTCTA+TGG - chr4_4:2484447-2484466 Msa0663580:CDS 30.0%
!! GATAACTCAGCTTTTAACTA+TGG + chr4_4:2484511-2484530 None:intergenic 30.0%
! AAATTGGCTCAGCACAAATA+TGG + chr4_4:2476683-2476702 Msa0663570:CDS 35.0%
! CTCAATTTTGCTCTTCAAGA+TGG - chr4_4:2476992-2477011 Msa0663580:intron 35.0%
!!! AATTTTCGGTGTCTACATGT+CGG + chr4_4:2477291-2477310 Msa0663570:intron 35.0%
TGTCATATTACTCAGTGTAG+TGG - chr4_4:2477351-2477370 Msa0663580:three_prime_UTR 35.0%
CAAGCTAATGCATGAATACA+AGG + chr4_4:2477594-2477613 Msa0663570:CDS 35.0%
AAATCAGAGTCATCCAATGT+TGG + chr4_4:2477641-2477660 Msa0663570:CDS 35.0%
! CTATTGACTATGTGAACACA+TGG - chr4_4:2477732-2477751 Msa0663580:intron 35.0%
ATGGATTCTTTGACTGTAGT+AGG - chr4_4:2477751-2477770 Msa0663580:intron 35.0%
GATTCTCTACCGTTGATATT+TGG - chr4_4:2477908-2477927 Msa0663580:three_prime_UTR 35.0%
! TTGGTGACTTTAGTGTACTT+AGG - chr4_4:2477927-2477946 Msa0663580:three_prime_UTR 35.0%
TGGTGACTTTAGTGTACTTA+GGG - chr4_4:2477928-2477947 Msa0663580:three_prime_UTR 35.0%
! CCTTTCGATTGTCTACATTT+TGG + chr4_4:2478030-2478049 Msa0663570:CDS 35.0%
CCAAAATGTAGACAATCGAA+AGG - chr4_4:2478027-2478046 Msa0663580:three_prime_UTR 35.0%
!!! TCTGATCTTTTTTGTTCCTG+GGG - chr4_4:2478257-2478276 Msa0663580:three_prime_UTR 35.0%
! TAAGGTACTATTCTTTGCTC+TGG - chr4_4:2478319-2478338 Msa0663580:three_prime_UTR 35.0%
! ATTGACAGTTGACGTTTTTG+AGG - chr4_4:2478683-2478702 Msa0663580:three_prime_UTR 35.0%
! TTTTCTTACTATGCAAGCTC+TGG + chr4_4:2478844-2478863 None:intergenic 35.0%
!! GAAGTACTTGTTGCTTTGAA+AGG + chr4_4:2478888-2478907 None:intergenic 35.0%
!!! GAAGCTTTTCTGGTTTATCA+GGG + chr4_4:2478979-2478998 None:intergenic 35.0%
! GACTTTGAAGATGAGAATGA+AGG - chr4_4:2479308-2479327 Msa0663580:intron 35.0%
! ATGAAACCTTTTAATGGCAG+AGG + chr4_4:2479610-2479629 None:intergenic 35.0%
! TAGCTTGGTCTTTGATTCTT+TGG - chr4_4:2479693-2479712 Msa0663580:intron 35.0%
! TTGGTCTTTGATTCTTTGGT+AGG - chr4_4:2479697-2479716 Msa0663580:intron 35.0%
AATCATACTAAGAACACCTG+AGG - chr4_4:2479935-2479954 Msa0663580:intron 35.0%
CTTCAGTATAATACAGCTGT+AGG + chr4_4:2480084-2480103 None:intergenic 35.0%
!! TGACTTTTGATAGCCTTTGT+TGG - chr4_4:2480191-2480210 Msa0663580:intron 35.0%
AACTCACATTTCACCAACAA+AGG + chr4_4:2480207-2480226 None:intergenic 35.0%
AACACGTTAATTATGTGCAC+TGG - chr4_4:2480262-2480281 Msa0663580:intron 35.0%
!! AATAAAAGTGTTGGGGTTGA+TGG + chr4_4:2480355-2480374 None:intergenic 35.0%
ATCTTGAGCTAGATACACTA+CGG - chr4_4:2480377-2480396 Msa0663580:intron 35.0%
AAGCGGTATTGCAAATCTTT+GGG + chr4_4:2480535-2480554 None:intergenic 35.0%
AAAGCGGTATTGCAAATCTT+TGG + chr4_4:2480536-2480555 None:intergenic 35.0%
TTACTCCAGTGTTCTACATT+CGG - chr4_4:2480566-2480585 Msa0663580:CDS 35.0%
TCGGATCAGAGATTATTCAA+AGG - chr4_4:2480585-2480604 Msa0663580:CDS 35.0%
AGGGACTATTCAATAGAGAA+GGG + chr4_4:2480615-2480634 None:intergenic 35.0%
TAGGGACTATTCAATAGAGA+AGG + chr4_4:2480616-2480635 None:intergenic 35.0%
TATTAACACCAGATCTTGCA+AGG - chr4_4:2480997-2481016 Msa0663580:intron 35.0%
AAAATCTTCCTTGCAAGATC+TGG + chr4_4:2481008-2481027 None:intergenic 35.0%
! TGCTTACATACTTCCCTTTT+TGG - chr4_4:2481070-2481089 Msa0663580:intron 35.0%
AATTACTCCCATGCCAAAAA+GGG + chr4_4:2481086-2481105 None:intergenic 35.0%
TAATTACTCCCATGCCAAAA+AGG + chr4_4:2481087-2481106 None:intergenic 35.0%
GAGTAATTAGTAAGGGAAAG+AGG - chr4_4:2481098-2481117 Msa0663580:intron 35.0%
TAGTAAGGGAAAGAGGAATA+TGG - chr4_4:2481105-2481124 Msa0663580:intron 35.0%
TGTGACTTACTTCAAGTCAA+AGG + chr4_4:2481169-2481188 None:intergenic 35.0%
TGTATCACCTGAAAAAAGCA+GGG - chr4_4:2481239-2481258 Msa0663580:intron 35.0%
TACACAAGCATAAGAACCAT+CGG + chr4_4:2481485-2481504 None:intergenic 35.0%
TCATGAACTTACTTCACCAA+GGG + chr4_4:2481530-2481549 None:intergenic 35.0%
TTCATGAACTTACTTCACCA+AGG + chr4_4:2481531-2481550 None:intergenic 35.0%
!! TCTCTAGAATTTCTACGAAG+AGG - chr4_4:2481672-2481691 Msa0663580:intron 35.0%
AATTTCTACGAAGAGGCTAT+AGG - chr4_4:2481679-2481698 Msa0663580:intron 35.0%
ATTTCTACGAAGAGGCTATA+GGG - chr4_4:2481680-2481699 Msa0663580:intron 35.0%
ATGCATAAAAGCAACGCAAA+CGG + chr4_4:2481724-2481743 None:intergenic 35.0%
! GGTTGGTATTTATGCACATT+AGG + chr4_4:2481870-2481889 None:intergenic 35.0%
! TTAAAACTGGACTAGAGACA+TGG + chr4_4:2481972-2481991 None:intergenic 35.0%
ACTGCAATATCACAAGATGT+TGG + chr4_4:2482003-2482022 None:intergenic 35.0%
!! ATTTGGAAGTATCATCTGCA+TGG - chr4_4:2482050-2482069 Msa0663580:CDS 35.0%
! ACTTTTGCCAAAGAAATACG+AGG - chr4_4:2482202-2482221 Msa0663580:intron 35.0%
CCAAGTTTAACACATCTACA+TGG + chr4_4:2482508-2482527 None:intergenic 35.0%
CCATGTAGATGTGTTAAACT+TGG - chr4_4:2482505-2482524 Msa0663580:intron 35.0%
!! GTGGTTAGCCTATAAATACA+TGG + chr4_4:2482591-2482610 None:intergenic 35.0%
TACAAATAGTGTCATGCTGA+AGG - chr4_4:2482675-2482694 Msa0663580:intron 35.0%
TGAAGAAGTTCTTGCTTATG+AGG + chr4_4:2482741-2482760 None:intergenic 35.0%
ATACAACAGTCTATGCTTCT+CGG + chr4_4:2482872-2482891 None:intergenic 35.0%
CCTCAAAGTTCGTCAAAATT+TGG + chr4_4:2482900-2482919 None:intergenic 35.0%
!! CCAAATTTTGACGAACTTTG+AGG - chr4_4:2482897-2482916 Msa0663580:intron 35.0%
TATTACGAATCTGATTACCC+GGG + chr4_4:2482957-2482976 None:intergenic 35.0%
CAATCTATATTCAAGCTGCA+TGG + chr4_4:2483022-2483041 None:intergenic 35.0%
TCCATTGTTGCGAATAGAAA+CGG - chr4_4:2483054-2483073 Msa0663580:intron 35.0%
TAGACACATACATAGTAGAC+AGG + chr4_4:2483093-2483112 None:intergenic 35.0%
! TTGAAGGAAGGTGATTTTTG+TGG + chr4_4:2483254-2483273 None:intergenic 35.0%
ATGAACAACATCTCATCAAC+TGG - chr4_4:2483341-2483360 Msa0663580:intron 35.0%
AAGACTTACATAGTTAGGGA+AGG + chr4_4:2483371-2483390 None:intergenic 35.0%
CAGAGAAGACTTACATAGTT+AGG + chr4_4:2483376-2483395 None:intergenic 35.0%
TGCAATGAGAAATCTCAGAA+AGG - chr4_4:2483537-2483556 Msa0663580:intron 35.0%
CCCCATAATAGCTATTACTA+TGG - chr4_4:2483953-2483972 Msa0663580:intron 35.0%
!! TTTGCTTTTCACAGTACACT+TGG + chr4_4:2484023-2484042 None:intergenic 35.0%
ACTGTGAAAAGCAAAACAGA+AGG - chr4_4:2484028-2484047 Msa0663580:intron 35.0%
! TTTTCACATTAGCCATGTAG+AGG + chr4_4:2484258-2484277 None:intergenic 35.0%
TGTTATAAAGAGGACTCATG+TGG - chr4_4:2484351-2484370 Msa0663580:CDS 35.0%
! TTTTGTTACTGTCTATGGTG+GGG + chr4_4:2484430-2484449 None:intergenic 35.0%
GTTCAAGTAAGCATATACCA+GGG + chr4_4:2484594-2484613 None:intergenic 35.0%
AGTTCAAGTAAGCATATACC+AGG + chr4_4:2484595-2484614 None:intergenic 35.0%
TAGCATTGTGTTGTGTTGTG+TGG + chr4_4:2476711-2476730 Msa0663570:CDS 40.0%
CAACACAATGCTACTATCCA+TGG - chr4_4:2476718-2476737 Msa0663580:three_prime_UTR 40.0%
AATGCTACTATCCATGGCTA+TGG - chr4_4:2476724-2476743 Msa0663580:three_prime_UTR 40.0%
GATGTGAAGGAAGAAAAGTG+AGG + chr4_4:2476772-2476791 Msa0663570:CDS 40.0%
!! GATAGTGGAGAAAGATGTGA+AGG + chr4_4:2476785-2476804 Msa0663570:CDS 40.0%
GAAGAAGGTGAAGAAGATAG+TGG + chr4_4:2476800-2476819 Msa0663570:CDS 40.0%
TTAGGATCGAAACCACGATT+TGG + chr4_4:2476908-2476927 Msa0663570:intron 40.0%
GCGAGAACTTCATAAGACTT+AGG + chr4_4:2476953-2476972 Msa0663570:intron 40.0%
GTACATATCACGGACACTTA+CGG + chr4_4:2477394-2477413 Msa0663570:intron 40.0%
!! GCTGTTGGGTATTGATTCTA+TGG - chr4_4:2477702-2477721 Msa0663580:three_prime_UTR 40.0%
GGTGACTTTAGTGTACTTAG+GGG - chr4_4:2477929-2477948 Msa0663580:three_prime_UTR 40.0%
AAGTAGGCATAGATGAACTG+AGG + chr4_4:2478555-2478574 None:intergenic 40.0%
TGCCAACATTCAACTTGTCT+TGG - chr4_4:2478786-2478805 Msa0663580:three_prime_UTR 40.0%
! AGCCAAGACAAGTTGAATGT+TGG + chr4_4:2478791-2478810 None:intergenic 40.0%
GGCTGTTGTAAAAAAGCTAC+AGG - chr4_4:2478807-2478826 Msa0663580:three_prime_UTR 40.0%
TCCGAGATGTCACTAGATTT+GGG - chr4_4:2478936-2478955 Msa0663580:three_prime_UTR 40.0%
TCCCAAATCTAGTGACATCT+CGG + chr4_4:2478940-2478959 None:intergenic 40.0%
!!! CGAAGCTTTTCTGGTTTATC+AGG + chr4_4:2478980-2478999 None:intergenic 40.0%
!! AAGGTTGATGGCCTTACTAT+AGG - chr4_4:2479215-2479234 Msa0663580:three_prime_UTR 40.0%
CATCTAAGGAGCCTATAGTA+AGG + chr4_4:2479229-2479248 None:intergenic 40.0%
GATCTGAAAAATGAAGCCAC+AGG + chr4_4:2479266-2479285 None:intergenic 40.0%
! AGAATGAAGGTTAGCTCTTG+CGG - chr4_4:2479321-2479340 Msa0663580:intron 40.0%
ATGAATATGTAGAGCGATGG+AGG + chr4_4:2479536-2479555 None:intergenic 40.0%
AATAGCAGTACACGTGAACT+TGG - chr4_4:2479557-2479576 Msa0663580:intron 40.0%
AACACCTGAGGAACAAAAGA+GGG - chr4_4:2479947-2479966 Msa0663580:intron 40.0%
AGCTACCGGAAAATTGATAG+AGG - chr4_4:2479970-2479989 Msa0663580:intron 40.0%
! GCACACCTCTATCAATTTTC+CGG + chr4_4:2479978-2479997 None:intergenic 40.0%
ATAATACAGCTGTAGGGACA+GGG + chr4_4:2480077-2480096 None:intergenic 40.0%
TATAATACAGCTGTAGGGAC+AGG + chr4_4:2480078-2480097 None:intergenic 40.0%
! GATCAAGTTGTGTGGTCAAT+TGG + chr4_4:2480120-2480139 None:intergenic 40.0%
TACTATTTACTGCGGTCACT+GGG + chr4_4:2480148-2480167 None:intergenic 40.0%
TTACTATTTACTGCGGTCAC+TGG + chr4_4:2480149-2480168 None:intergenic 40.0%
GTAAAACTTGATGTAGGCTC+TGG - chr4_4:2480165-2480184 Msa0663580:intron 40.0%
GTCTAAGTCCTTAACTACGT+CGG - chr4_4:2480442-2480461 Msa0663580:intron 40.0%
ATAAGTGTCCGACGTAGTTA+AGG + chr4_4:2480453-2480472 None:intergenic 40.0%
!! TGAATTCGCAGTGCTGATTT+AGG - chr4_4:2480493-2480512 Msa0663580:intron 40.0%
GGTATTGCAAATCTTTGGGT+GGG + chr4_4:2480531-2480550 None:intergenic 40.0%
GGACTATTCAATAGAGAAGG+GGG + chr4_4:2480613-2480632 None:intergenic 40.0%
GGGACTATTCAATAGAGAAG+GGG + chr4_4:2480614-2480633 None:intergenic 40.0%
!! ACATACTTCCCTTTTTGGCA+TGG - chr4_4:2481075-2481094 Msa0663580:intron 40.0%
!! CATACTTCCCTTTTTGGCAT+GGG - chr4_4:2481076-2481095 Msa0663580:intron 40.0%
TGGCATGGGAGTAATTAGTA+AGG - chr4_4:2481090-2481109 Msa0663580:intron 40.0%
GGCATGGGAGTAATTAGTAA+GGG - chr4_4:2481091-2481110 Msa0663580:intron 40.0%
CCACGTCAAATGAGAAATAG+AGG + chr4_4:2481139-2481158 None:intergenic 40.0%
! CCTCTATTTCTCATTTGACG+TGG - chr4_4:2481136-2481155 Msa0663580:intron 40.0%
CTGTATCACCTGAAAAAAGC+AGG - chr4_4:2481238-2481257 Msa0663580:intron 40.0%
!!! ATCTATGCCCTGCTTTTTTC+AGG + chr4_4:2481249-2481268 None:intergenic 40.0%
AGGCCAAAGAAGAATTGTTG+AGG - chr4_4:2481619-2481638 Msa0663580:intron 40.0%
GGCCAAAGAAGAATTGTTGA+GGG - chr4_4:2481620-2481639 Msa0663580:intron 40.0%
GACCCTCAACAATTCTTCTT+TGG + chr4_4:2481625-2481644 None:intergenic 40.0%
! TGCTTGTGTCCTTTTTGCTA+TGG - chr4_4:2481743-2481762 Msa0663580:CDS 40.0%
GTGGGAAGAAGATTCTGATT+TGG - chr4_4:2482033-2482052 Msa0663580:CDS 40.0%
! CTGTGTTTTATCACACGCAA+TGG - chr4_4:2482105-2482124 Msa0663580:intron 40.0%
TGCTCATATGCAGAGAAAGA+AGG - chr4_4:2482136-2482155 Msa0663580:intron 40.0%
GCTTTGTCCTCGTATTTCTT+TGG + chr4_4:2482212-2482231 None:intergenic 40.0%
GCCTAGAGCCATGTATTTAT+AGG - chr4_4:2482580-2482599 Msa0663580:intron 40.0%
GCCTATAAATACATGGCTCT+AGG + chr4_4:2482584-2482603 None:intergenic 40.0%
!! GTGTGACAAACATTTTGGTG+TGG + chr4_4:2482610-2482629 None:intergenic 40.0%
!! TCATTGAGAGCACTGAAATC+AGG - chr4_4:2482768-2482787 Msa0663580:intron 40.0%
TCTATATTCAAGCTGCATGG+AGG + chr4_4:2483019-2483038 None:intergenic 40.0%
TTCGCAACAATGGAGAACAT+GGG + chr4_4:2483048-2483067 None:intergenic 40.0%
ATTCGCAACAATGGAGAACA+TGG + chr4_4:2483049-2483068 None:intergenic 40.0%
TCCGTTTCTATTCGCAACAA+TGG + chr4_4:2483058-2483077 None:intergenic 40.0%
TACCTCACTCATAGCTTTCA+CGG - chr4_4:2483163-2483182 Msa0663580:intron 40.0%
! TTCACGGTTCTTGTTGATGA+TGG - chr4_4:2483179-2483198 Msa0663580:intron 40.0%
TGGTGAAGAGTTGCTAACAT+GGG + chr4_4:2483234-2483253 None:intergenic 40.0%
!!! AACAGAGGAGTTTTGAAGGA+AGG + chr4_4:2483266-2483285 None:intergenic 40.0%
!! CTTCAACAGAGGAGTTTTGA+AGG + chr4_4:2483270-2483289 None:intergenic 40.0%
!! CTAGAGAGTGTTACTACAGA+TGG + chr4_4:2483308-2483327 None:intergenic 40.0%
GAGATGTTGTTCATCATTCG+TGG + chr4_4:2483335-2483354 None:intergenic 40.0%
AGGGGTCGATGAAGAAAATT+TGG + chr4_4:2483656-2483675 None:intergenic 40.0%
! AATTTTCTTCATCGACCCCT+CGG - chr4_4:2483656-2483675 Msa0663580:intron 40.0%
TGGAGGAAATGAGGATCAAA+AGG + chr4_4:2483774-2483793 None:intergenic 40.0%
! AACCGACATTGATTGAAGGT+AGG - chr4_4:2483798-2483817 Msa0663580:intron 40.0%
GACCTACCTTCAATCAATGT+CGG + chr4_4:2483803-2483822 None:intergenic 40.0%
TCTTCTGATTGGAAACATGC+AGG + chr4_4:2483919-2483938 None:intergenic 40.0%
ATGGAAAACAAAACCTCTCC+AGG - chr4_4:2483972-2483991 Msa0663580:intron 40.0%
TGGAAAACAAAACCTCTCCA+GGG - chr4_4:2483973-2483992 Msa0663580:intron 40.0%
TTTCACAGTACACTTGGTCA+GGG + chr4_4:2484017-2484036 None:intergenic 40.0%
! TTTTCACAGTACACTTGGTC+AGG + chr4_4:2484018-2484037 None:intergenic 40.0%
TGAAGATCAGACACACGATA+TGG - chr4_4:2484223-2484242 Msa0663580:intron 40.0%
GAAGATCAGACACACGATAT+GGG - chr4_4:2484224-2484243 Msa0663580:intron 40.0%
ATATACCAGGGTATGACAGT+TGG + chr4_4:2484582-2484601 None:intergenic 40.0%
! GTGTTGTGTGGCACTGAAAT+TGG + chr4_4:2476699-2476718 Msa0663570:CDS 45.0%
AGATGACATAGCCATAGCCA+TGG + chr4_4:2476738-2476757 Msa0663570:CDS 45.0%
GGAAGAAAAGTGAGGTTGTG+AGG + chr4_4:2476764-2476783 Msa0663570:CDS 45.0%
TCTTCATCAGAGCCAAATCG+TGG - chr4_4:2476893-2476912 Msa0663580:three_prime_UTR 45.0%
CGTGGTTTCGATCCTAAATC+AGG - chr4_4:2476911-2476930 Msa0663580:intron 45.0%
CAAGAACGTTGCGTTTAGGA+CGG + chr4_4:2478067-2478086 Msa0663570:CDS 45.0%
AGAGCAAGAACGTTGCGTTT+AGG + chr4_4:2478071-2478090 Msa0663570:CDS 45.0%
GAAGAAATGTTGCTGGGCAA+GGG + chr4_4:2478296-2478315 Msa0663570:CDS 45.0%
TGAAGAAATGTTGCTGGGCA+AGG + chr4_4:2478297-2478316 Msa0663570:CDS 45.0%
! TCGCATGCCTTTGTTTACCA+TGG - chr4_4:2478497-2478516 Msa0663580:three_prime_UTR 45.0%
CTCCGAGATGTCACTAGATT+TGG - chr4_4:2478935-2478954 Msa0663580:three_prime_UTR 45.0%
! AGCTGCTTTGAACAACTGAG+AGG + chr4_4:2479005-2479024 None:intergenic 45.0%
TCAGTTGTTCAAAGCAGCTC+TGG - chr4_4:2479006-2479025 Msa0663580:three_prime_UTR 45.0%
TCCTTAGATGATATCCCTGC+AGG - chr4_4:2479239-2479258 Msa0663580:exon 45.0%
TCCTGCAGGGATATCATCTA+AGG + chr4_4:2479243-2479262 None:intergenic 45.0%
! GAATGAAGGTTAGCTCTTGC+GGG - chr4_4:2479322-2479341 Msa0663580:intron 45.0%
! TTCTTAGAAGTGCAGGTCGT+TGG - chr4_4:2479498-2479517 Msa0663580:intron 45.0%
ATGGTGCCTCTGCCATTAAA+AGG - chr4_4:2479601-2479620 Msa0663580:intron 45.0%
ACTCACTCTTAGCTCCTGAT+TGG - chr4_4:2479854-2479873 Msa0663580:intron 45.0%
CTCACTCTTAGCTCCTGATT+GGG - chr4_4:2479855-2479874 Msa0663580:intron 45.0%
TCACTCTTAGCTCCTGATTG+GGG - chr4_4:2479856-2479875 Msa0663580:intron 45.0%
!! TTAGCTTGTACACCCCAATC+AGG + chr4_4:2479871-2479890 None:intergenic 45.0%
GAACACCTGAGGAACAAAAG+AGG - chr4_4:2479946-2479965 Msa0663580:intron 45.0%
!! AGTGCTGATTTAGGCCTTCT+AGG - chr4_4:2480502-2480521 Msa0663580:intron 45.0%
CGGTATTGCAAATCTTTGGG+TGG + chr4_4:2480532-2480551 None:intergenic 45.0%
CTGATCCGAATGTAGAACAC+TGG + chr4_4:2480574-2480593 None:intergenic 45.0%
ATATAGCTGTACCAGGGTAC+TGG + chr4_4:2480770-2480789 None:intergenic 45.0%
! AGCTATCTGGTGTTAACTGC+TGG + chr4_4:2481345-2481364 None:intergenic 45.0%
TCATAAATCGTTCAGGTCCC+TGG - chr4_4:2481440-2481459 Msa0663580:intron 45.0%
GTGATGCTTAAGCAAACCGA+TGG - chr4_4:2481466-2481485 Msa0663580:intron 45.0%
GAAGAATTGTTGAGGGTCCT+TGG - chr4_4:2481627-2481646 Msa0663580:intron 45.0%
CTTGGACTTCAAGAAGAGGA+GGG - chr4_4:2481645-2481664 Msa0663580:intron 45.0%
TGATATTGCAGTCAAGCACG+TGG - chr4_4:2482011-2482030 Msa0663580:CDS 45.0%
!! TGGAAGTATCATCTGCATGG+CGG - chr4_4:2482053-2482072 Msa0663580:CDS 45.0%
CCTCTAGCAATGTTCTACTC+AGG + chr4_4:2482080-2482099 None:intergenic 45.0%
CCTGAGTAGAACATTGCTAG+AGG - chr4_4:2482077-2482096 Msa0663580:CDS 45.0%
GAGTAGAACATTGCTAGAGG+AGG - chr4_4:2482080-2482099 Msa0663580:CDS 45.0%
GTATTTGTCAGCTGCAGTGT+TGG + chr4_4:2482641-2482660 None:intergenic 45.0%
! AGCACTGAAATCAGGTTCTG+AGG - chr4_4:2482776-2482795 Msa0663580:intron 45.0%
! GCACTGAAATCAGGTTCTGA+GGG - chr4_4:2482777-2482796 Msa0663580:intron 45.0%
!! AAATCAGGTTCTGAGGGCTT+TGG - chr4_4:2482783-2482802 Msa0663580:intron 45.0%
!! AATCAGGTTCTGAGGGCTTT+GGG - chr4_4:2482784-2482803 Msa0663580:intron 45.0%
TTCACCAGCTCTCTTGAACT+TGG - chr4_4:2482810-2482829 Msa0663580:intron 45.0%
AGTACCAAGTTCAAGAGAGC+TGG + chr4_4:2482817-2482836 None:intergenic 45.0%
! TTTGACGAACTTTGAGGACC+CGG - chr4_4:2482903-2482922 Msa0663580:intron 45.0%
GGGAAGTGATGATTCTGCAA+GGG + chr4_4:2482937-2482956 None:intergenic 45.0%
CTTGCAGAATCATCACTTCC+CGG - chr4_4:2482936-2482955 Msa0663580:intron 45.0%
TTGCAGAATCATCACTTCCC+GGG - chr4_4:2482937-2482956 Msa0663580:intron 45.0%
!! CTGCATGGAGGAAGCATTTA+AGG + chr4_4:2483007-2483026 None:intergenic 45.0%
!! GGCATTTGCTTTAGAAGCAG+AGG + chr4_4:2483141-2483160 None:intergenic 45.0%
GAAAGCTATGAGTGAGGTAG+AGG + chr4_4:2483162-2483181 None:intergenic 45.0%
AACCGTGAAAGCTATGAGTG+AGG + chr4_4:2483168-2483187 None:intergenic 45.0%
AGAGTTGCTAACATGGGCAT+TGG + chr4_4:2483228-2483247 None:intergenic 45.0%
GTGGTGAAGAGTTGCTAACA+TGG + chr4_4:2483235-2483254 None:intergenic 45.0%
AGAAGTGGCTTCTTCAACAG+AGG + chr4_4:2483281-2483300 None:intergenic 45.0%
!! ACTACAGATGGTGGAAGAAG+TGG + chr4_4:2483296-2483315 None:intergenic 45.0%
!! GAGAGTGTTACTACAGATGG+TGG + chr4_4:2483305-2483324 None:intergenic 45.0%
TCGTCCATGTTAGCAAAGAG+AGG - chr4_4:2483443-2483462 Msa0663580:intron 45.0%
GGTTCCTCTCTTTGCTAACA+TGG + chr4_4:2483450-2483469 None:intergenic 45.0%
! ATTTTCTTCATCGACCCCTC+GGG - chr4_4:2483657-2483676 Msa0663580:intron 45.0%
GGGTGTTCAACCACTTGTAT+TGG - chr4_4:2483677-2483696 Msa0663580:intron 45.0%
!! TCAATCAATGTCGGTTCGTC+TGG + chr4_4:2483794-2483813 None:intergenic 45.0%
! GACGAACCGACATTGATTGA+AGG - chr4_4:2483794-2483813 Msa0663580:intron 45.0%
GTGCTCTTTGCTCTTCTGAT+TGG + chr4_4:2483930-2483949 None:intergenic 45.0%
AAACAAAACCTCTCCAGGGT+AGG - chr4_4:2483977-2483996 Msa0663580:intron 45.0%
TTCACAGTACACTTGGTCAG+GGG + chr4_4:2484016-2484035 None:intergenic 45.0%
GGTGGGGACTTCAGAATTTA+AGG + chr4_4:2484414-2484433 None:intergenic 45.0%
TTTCTCCAACTGTCATACCC+TGG - chr4_4:2484574-2484593 Msa0663580:CDS 45.0%
TGTTGCGGTTGTTGAGTGTG+AGG - chr4_4:2477513-2477532 Msa0663580:three_prime_UTR 50.0%
! TGCTTGCGGCTTTTATGTGC+TGG - chr4_4:2478226-2478245 Msa0663580:three_prime_UTR 50.0%
! GCTTGCGGCTTTTATGTGCT+GGG - chr4_4:2478227-2478246 Msa0663580:three_prime_UTR 50.0%
GTTCCTGGGGTTATGTATGC+AGG - chr4_4:2478270-2478289 Msa0663580:three_prime_UTR 50.0%
! TGAGAGGCTCGAAGCTTTTC+TGG + chr4_4:2478989-2479008 None:intergenic 50.0%
! GGTTAGCTCTTGCGGGAAAA+TGG - chr4_4:2479329-2479348 Msa0663580:intron 50.0%
! AGCTCCCTCTTTTGTTCCTC+AGG + chr4_4:2479954-2479973 None:intergenic 50.0%
GGAACAAAAGAGGGAGCTAC+CGG - chr4_4:2479956-2479975 Msa0663580:intron 50.0%
! GGGATAGGGATCAAGTTGTG+TGG + chr4_4:2480128-2480147 None:intergenic 50.0%
TTACTGCGGTCACTGGGATA+GGG + chr4_4:2480142-2480161 None:intergenic 50.0%
TTTACTGCGGTCACTGGGAT+AGG + chr4_4:2480143-2480162 None:intergenic 50.0%
TGCTTAAGCATCACCTGCCA+GGG + chr4_4:2481460-2481479 None:intergenic 50.0%
TTGCTTAAGCATCACCTGCC+AGG + chr4_4:2481461-2481480 None:intergenic 50.0%
GGTCCTTGGACTTCAAGAAG+AGG - chr4_4:2481641-2481660 Msa0663580:intron 50.0%
CCTCCTCTTCTTGAAGTCCA+AGG + chr4_4:2481647-2481666 None:intergenic 50.0%
CCTTGGACTTCAAGAAGAGG+AGG - chr4_4:2481644-2481663 Msa0663580:intron 50.0%
AAGATGCAGTGCAGAACCAC+AGG + chr4_4:2481822-2481841 None:intergenic 50.0%
TATTGCAGTCAAGCACGTGG+TGG - chr4_4:2482014-2482033 Msa0663580:CDS 50.0%
ATTGCAGTCAAGCACGTGGT+GGG - chr4_4:2482015-2482034 Msa0663580:CDS 50.0%
ATGCTGAAGGACAATCGCAG+CGG - chr4_4:2482688-2482707 Msa0663580:intron 50.0%
!! CGGTTTGCTGCTAATCTTCG+TGG + chr4_4:2482852-2482871 None:intergenic 50.0%
! TGATGATTCTGCAAGGGCGT+TGG + chr4_4:2482931-2482950 None:intergenic 50.0%
CGGGAAGTGATGATTCTGCA+AGG + chr4_4:2482938-2482957 None:intergenic 50.0%
! TTTAAGGCGAAGGCGAAGGA+AGG + chr4_4:2482991-2483010 None:intergenic 50.0%
! AGCATTTAAGGCGAAGGCGA+AGG + chr4_4:2482995-2483014 None:intergenic 50.0%
!! GGAGGAAGCATTTAAGGCGA+AGG + chr4_4:2483001-2483020 None:intergenic 50.0%
!!! GGCAAGCTTGCTGCAGATTT+TGG - chr4_4:2483200-2483219 Msa0663580:intron 50.0%
ACAAGTGGTTGAACACCCGA+GGG + chr4_4:2483675-2483694 None:intergenic 50.0%
TACAAGTGGTTGAACACCCG+AGG + chr4_4:2483676-2483695 None:intergenic 50.0%
GACGCTACGACCAATACAAG+TGG + chr4_4:2483690-2483709 None:intergenic 50.0%
AGCGTCTGACTCTTTCCCTT+AGG - chr4_4:2483704-2483723 Msa0663580:intron 50.0%
CTGACTCTTTCCCTTAGGTC+CGG - chr4_4:2483709-2483728 Msa0663580:intron 50.0%
!! ATCAATGTCGGTTCGTCTGG+AGG + chr4_4:2483791-2483810 None:intergenic 50.0%
CTTCTGACTAGTACCTACCC+TGG + chr4_4:2483993-2484012 None:intergenic 50.0%
! CGTTGCGTTTAGGACGGAGA+GGG + chr4_4:2478061-2478080 Msa0663570:CDS 55.0%
! ACGTTGCGTTTAGGACGGAG+AGG + chr4_4:2478062-2478081 Msa0663570:CDS 55.0%
TGATATCCCTGCAGGACCTG+TGG - chr4_4:2479247-2479266 Msa0663580:CDS 55.0%
ATGAAGCCACAGGTCCTGCA+GGG + chr4_4:2479256-2479275 None:intergenic 55.0%
AATGAAGCCACAGGTCCTGC+AGG + chr4_4:2479257-2479276 None:intergenic 55.0%
CTTTGGGTGGGAAGCCTAGA+AGG + chr4_4:2480519-2480538 None:intergenic 55.0%
AAATCGTTCAGGTCCCTGGC+AGG - chr4_4:2481444-2481463 Msa0663580:intron 55.0%
AGTGCAACTCGCTTCACCCT+TGG - chr4_4:2481511-2481530 Msa0663580:intron 55.0%
!! TTCTGCAAGGGCGTTGGTTC+CGG + chr4_4:2482925-2482944 None:intergenic 55.0%
CAAGTGGTTGAACACCCGAG+GGG + chr4_4:2483674-2483693 None:intergenic 55.0%
ACTCTTTCCCTTAGGTCCGG+AGG - chr4_4:2483712-2483731 Msa0663580:intron 55.0%
CTTGCTTCCTCCGGACCTAA+GGG + chr4_4:2483722-2483741 None:intergenic 55.0%
GCATCATCGCTTGCTTCCTC+CGG + chr4_4:2483731-2483750 None:intergenic 55.0%
GCGATGATGCATCCACTGCT+CGG - chr4_4:2483741-2483760 Msa0663580:intron 55.0%
CGGTTCGTCTGGAGGAAATG+AGG + chr4_4:2483783-2483802 None:intergenic 55.0%
GACTAGTACCTACCCTGGAG+AGG + chr4_4:2483988-2484007 None:intergenic 55.0%
TGGGCACATGCACCTCTACA+TGG - chr4_4:2484243-2484262 Msa0663580:intron 55.0%
GGGCCTGCATACATAACCCC+AGG + chr4_4:2478276-2478295 Msa0663570:CDS 60.0%
GCTGTGTTTCGCCAGTACCC+TGG - chr4_4:2480756-2480775 Msa0663580:CDS 60.0%
!! TCTGCAAGGGCGTTGGTTCC+GGG + chr4_4:2482924-2482943 None:intergenic 60.0%
AAGGCGAAGGCGAAGGAAGG+AGG + chr4_4:2482988-2483007 None:intergenic 60.0%
GCTTGCTTCCTCCGGACCTA+AGG + chr4_4:2483723-2483742 None:intergenic 60.0%
! AAAGGCGTGACTCCGAGCAG+TGG + chr4_4:2483756-2483775 None:intergenic 60.0%
GACAATCGCAGCGGCAGCAG+TGG - chr4_4:2482697-2482716 Msa0663580:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 2476670 2484657 2476670 ID=Msa0663580;Name=Msa0663580
chr4_4 mRNA 2476670 2484657 2476670 ID=Msa0663580-mRNA-1;Parent=Msa0663580;Name=Msa0663580-mRNA-1;_AED=0.19;_eAED=0.19;_QI=55|0.92|1|1|0.76|0.71|14|1982|351
chr4_4 exon 2476670 2476913 2476670 ID=Msa0663580-mRNA-1:exon:673;Parent=Msa0663580-mRNA-1
chr4_4 exon 2477297 2477408 2477297 ID=Msa0663580-mRNA-1:exon:672;Parent=Msa0663580-mRNA-1
chr4_4 exon 2477504 2477742 2477504 ID=Msa0663580-mRNA-1:exon:671;Parent=Msa0663580-mRNA-1
chr4_4 exon 2477859 2479305 2477859 ID=Msa0663580-mRNA-1:exon:670;Parent=Msa0663580-mRNA-1
chr4_4 exon 2479626 2479706 2479626 ID=Msa0663580-mRNA-1:exon:669;Parent=Msa0663580-mRNA-1
chr4_4 exon 2479790 2479872 2479790 ID=Msa0663580-mRNA-1:exon:668;Parent=Msa0663580-mRNA-1
chr4_4 exon 2480550 2480610 2480550 ID=Msa0663580-mRNA-1:exon:667;Parent=Msa0663580-mRNA-1
chr4_4 exon 2480721 2480823 2480721 ID=Msa0663580-mRNA-1:exon:666;Parent=Msa0663580-mRNA-1
chr4_4 exon 2480929 2480987 2480929 ID=Msa0663580-mRNA-1:exon:665;Parent=Msa0663580-mRNA-1
chr4_4 exon 2481729 2481814 2481729 ID=Msa0663580-mRNA-1:exon:664;Parent=Msa0663580-mRNA-1
chr4_4 exon 2481998 2482109 2481998 ID=Msa0663580-mRNA-1:exon:663;Parent=Msa0663580-mRNA-1
chr4_4 exon 2482294 2482356 2482294 ID=Msa0663580-mRNA-1:exon:662;Parent=Msa0663580-mRNA-1
chr4_4 exon 2483005 2483035 2483005 ID=Msa0663580-mRNA-1:exon:661;Parent=Msa0663580-mRNA-1
chr4_4 exon 2484286 2484657 2484286 ID=Msa0663580-mRNA-1:exon:660;Parent=Msa0663580-mRNA-1
chr4_4 five_prime_UTR 2484603 2484657 2484603 ID=Msa0663580-mRNA-1:five_prime_utr;Parent=Msa0663580-mRNA-1
chr4_4 CDS 2484286 2484602 2484286 ID=Msa0663580-mRNA-1:cds;Parent=Msa0663580-mRNA-1
chr4_4 CDS 2483005 2483035 2483005 ID=Msa0663580-mRNA-1:cds;Parent=Msa0663580-mRNA-1
chr4_4 CDS 2482294 2482356 2482294 ID=Msa0663580-mRNA-1:cds;Parent=Msa0663580-mRNA-1
chr4_4 CDS 2481998 2482109 2481998 ID=Msa0663580-mRNA-1:cds;Parent=Msa0663580-mRNA-1
chr4_4 CDS 2481729 2481814 2481729 ID=Msa0663580-mRNA-1:cds;Parent=Msa0663580-mRNA-1
chr4_4 CDS 2480929 2480987 2480929 ID=Msa0663580-mRNA-1:cds;Parent=Msa0663580-mRNA-1
chr4_4 CDS 2480721 2480823 2480721 ID=Msa0663580-mRNA-1:cds;Parent=Msa0663580-mRNA-1
chr4_4 CDS 2480550 2480610 2480550 ID=Msa0663580-mRNA-1:cds;Parent=Msa0663580-mRNA-1
chr4_4 CDS 2479790 2479872 2479790 ID=Msa0663580-mRNA-1:cds;Parent=Msa0663580-mRNA-1
chr4_4 CDS 2479626 2479706 2479626 ID=Msa0663580-mRNA-1:cds;Parent=Msa0663580-mRNA-1
chr4_4 CDS 2479246 2479305 2479246 ID=Msa0663580-mRNA-1:cds;Parent=Msa0663580-mRNA-1
chr4_4 three_prime_UTR 2477859 2479245 2477859 ID=Msa0663580-mRNA-1:three_prime_utr;Parent=Msa0663580-mRNA-1
chr4_4 three_prime_UTR 2477504 2477742 2477504 ID=Msa0663580-mRNA-1:three_prime_utr;Parent=Msa0663580-mRNA-1
chr4_4 three_prime_UTR 2477297 2477408 2477297 ID=Msa0663580-mRNA-1:three_prime_utr;Parent=Msa0663580-mRNA-1
chr4_4 three_prime_UTR 2476670 2476913 2476670 ID=Msa0663580-mRNA-1:three_prime_utr;Parent=Msa0663580-mRNA-1
Gene Sequence

>Msa0663580

ATGCTACTATCCATGGCTATGGCTATGTCATCTCTGCCTCACAACCTCACTTTTCTTCCTTCACATCTTTCTCCACTATCTTCTTCACCTTCTTCAATTTCTACTACTAAATCTCTTCGAAACACTTCTTTATTCAAAATCAAATGCATTAAAACCGAAAAAGAAGCTTCTTCATCAGAGCCAAATCGTGGTTTCGATCCTAAATCAGGTGTATCTGTTTACAAACCTAAGTCTTATGAAGTTCTCGCTACTGATGCTGCTAATTCACTCAATTTTGCTCTTCAAGATGGAAAACTGAGACTCGAAATCGATTTCCCGCCCTTGCCCAGCAACATTTCTTCATATAAGGTATTCCCTGATAAACCAGAAAAGCTTCGAGCCTCTCAGTTGTTCAAAGCAGCTCTGGATTCAGTTGATGGCCTTACTATAGGCTCCTTAGATGATATCCCTGCAGGACCTGTGGCTTCATTTTTCAGATCTGTTAGAAACACCCTTGATTTTGACTTTGAAGATGAGAATGAAGGTCGTTGGCAGTCAAGTGAACCTCCATCGCTCTACATATTCATTAATAGCAGTACACGTGAACTTGGTTATATTGAGAAGTATGTGGAAAAATTTGCTCCATCAACCCCAACACTTTTATTTAATCTTGAGCTAGATACACTACGTGCTGATTTAGGCCTTCTAGGCTTCCCACCCAAAGATTTGCAATACCGCTTTCTTTCTCAATTTACTCCAGTGTTCTACATTCGGATCAGAGATTATTCAAAGACAGTTGCAGTAGCACCTTATATTGTCAATTACAGTGGAGCTGTGTTTCGCCAGTACCCTGGTCCCTGGCAGGTGATGCTTAAGCAAACCGATGGTTCTTATGCTTGTGTAGCAGAAAGTGCAACTCGCTTCACCCTTGGTGAAGCCAAAGAAGAATTGTTGAGGGTCCTTGGACTTCAAGAAGAGGAGGGAAGCTCTCTAGAATTTCTACGAAGAGGCTATAGGTCAAGCACGTGGTGGGAAGAAGATTCTGATTTGGAAGTATCATCTGCATGGCGGACCTGA

Protein sequence

>Msa0663580

MLLSMAMAMSSLPHNLTFLPSHLSPLSSSPSSISTTKSLRNTSLFKIKCIKTEKEASSSEPNRGFDPKSGVSVYKPKSYEVLATDAANSLNFALQDGKLRLEIDFPPLPSNISSYKVFPDKPEKLRASQLFKAALDSVDGLTIGSLDDIPAGPVASFFRSVRNTLDFDFEDENEGRWQSSEPPSLYIFINSSTRELGYIEKYVEKFAPSTPTLLFNLELDTLRADLGLLGFPPKDLQYRFLSQFTPVFYIRIRDYSKTVAVAPYIVNYSGAVFRQYPGPWQVMLKQTDGSYACVAESATRFTLGEAKEELLRVLGLQEEEGSSLEFLRRGYRSSTWWEEDSDLEVSSAWRT*