AlfalfaGEDB | Msa0541700

M. sativa cultivar zhongmu-4 / Msa0541700

KEGG: -
GO: -
PFAM: PF05678.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0541700	XP_003630432.2	98.438	192	3	0	1	192	1	192	5.08e-134	383

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0541700	sp\|Q9FNP0\|VQ31_ARATH	56.983	179	55	6	16	191	13	172	6.63e-45	149

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0541700	G7LGI0	98.438	192	3	0	1	192	1	192	2.43e-134	383

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001040	Msa0541700	0.809805	1.577633e-50	-8.615850e-47
Msa0001510	Msa0541700	0.801380	9.253753e-49	-8.615850e-47
Msa0002110	Msa0541700	0.801137	1.037415e-48	-8.615850e-47
Msa0007570	Msa0541700	0.818356	2.045800e-52	-8.615850e-47
Msa0021240	Msa0541700	0.814571	1.439603e-51	-8.615850e-47
Msa0025060	Msa0541700	0.811675	6.217108e-51	-8.615850e-47
Msa0028450	Msa0541700	0.809379	1.947972e-50	-8.615850e-47
Msa0028940	Msa0541700	0.811694	6.159837e-51	-8.615850e-47
Msa0029280	Msa0541700	0.831435	1.671745e-55	-8.615850e-47
Msa0030710	Msa0541700	0.803787	2.950890e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0541700	MtrunA17_Chr8g0385371	98.438	192	3	0	1	192	1	192	4.67e-138	383
Msa0541700	MtrunA17_Chr4g0047141	34.054	185	94	6	20	188	61	233	6.31e-13	65.1
Msa0541700	MtrunA17_Chr2g0282361	34.826	201	93	10	7	188	71	252	4.87e-12	62.8
Msa0541700	MtrunA17_Chr2g0317321	32.683	205	91	9	14	190	58	243	8.07e-11	59.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0541700	AT5G08480.2	56.983	179	55	6	16	191	13	172	6.74e-46	149
Msa0541700	AT5G08480.3	56.983	179	55	6	16	191	13	172	6.74e-46	149
Msa0541700	AT5G08480.1	47.486	179	41	5	16	191	13	141	7.45e-31	110
Msa0541700	AT5G53830.1	32.828	198	95	5	20	186	49	239	4.34e-12	63.2
Msa0541700	AT1G28280.1	33.810	210	87	11	11	188	49	238	8.86e-11	59.7
Msa0541700	AT1G28280.2	33.810	210	87	11	11	188	49	238	8.89e-11	59.7

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Find 49 sgRNAs with CRISPR-Local

Find 49 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAAGACCAAACTACAA+AGG	0.666842	4_1:-25730856	Msa0541700:CDS
AAATCTGATTGTGATGGGAA+TGG	0.567485	4_1:-25731006	None:intergenic
AACAATGTGGAAGGTGTGGT+AGG	0.566267	4_1:+25730639	None:intergenic
AACTGAGAGAACAATGTGGA+AGG	0.625030	4_1:+25730630	None:intergenic
AAGCCACTTGCTTTAGACCT+GGG	0.539510	4_1:+25730501	None:intergenic
ACAATGTGGAAGGTGTGGTA+GGG	0.605585	4_1:+25730640	None:intergenic
ACACAAACACAGGTGCATTT+AGG	0.187922	4_1:-25730923	Msa0541700:CDS
ACATTTGTTCACACAAACAC+AGG	0.619702	4_1:-25730933	Msa0541700:CDS
AGAAAGCTATCAAAGAGAGA+CGG	0.633848	4_1:-25730542	Msa0541700:CDS
AGAGAACAATGTGGAAGGTG+TGG	0.689227	4_1:+25730635	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATTTCTTGACTTAGAAGA+AGG	+	chr4_1:25730716-25730735	None:intergenic	30.0%
GTTCTCTCAGTTAACTATTA+TGG	-	chr4_1:25730811-25730830	Msa0541700:CDS	30.0%
ATGGAAGATGAAAAGAAACA+AGG	-	chr4_1:25730830-25730849	Msa0541700:CDS	30.0%
TGGAAGATGAAAAGAAACAA+GGG	-	chr4_1:25730831-25730850	Msa0541700:CDS	30.0%
GTGTGAACAAATGTTGTTAG+TGG	+	chr4_1:25730491-25730510	None:intergenic	35.0%
ACATTTGTTCACACAAACAC+AGG	-	chr4_1:25730497-25730516	Msa0541700:CDS	35.0%
GAAGTAGTGCAAAGATTAAC+AGG	-	chr4_1:25730530-25730549	Msa0541700:CDS	35.0%
AAAGGAAGACCAAACTACAA+AGG	-	chr4_1:25730574-25730593	Msa0541700:CDS	35.0%
TCATGCATTTCCTTCTTTCA+TGG	+	chr4_1:25730634-25730653	None:intergenic	35.0%
CTTCAATATCACAAACAACC+AGG	-	chr4_1:25730683-25730702	Msa0541700:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	25730437	25731015	25730437	ID=Msa0541700;Name=Msa0541700
chr4_1	mRNA	25730437	25731015	25730437	ID=Msa0541700-mRNA-1;Parent=Msa0541700;Name=Msa0541700-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|192
chr4_1	exon	25730437	25731015	25730437	ID=Msa0541700-mRNA-1:exon:6988;Parent=Msa0541700-mRNA-1
chr4_1	CDS	25730437	25731015	25730437	ID=Msa0541700-mRNA-1:cds;Parent=Msa0541700-mRNA-1

Gene Sequence

>Msa0541700

ATGGGAATGGAGAAGCCACCAGTACATGGTTCAACAACAGGTGATTGTAAACCACTAACAACATTTGTTCACACAAACACAGGTGCATTTAGGGAAGTAGTGCAAAGATTAACAGGTCCCTCAGAAGGCAATGCAACAAAGGAAGACCAAACTACAAAGGTTGCACCTATTACGAAGAGAACACCACCAAAACTCCATGAAAGAAGGAAATGCATGAAGCCAAAACTTGAGATTGTTAAACCAAATCTTCAATATCACAAACAACCAGGTGCATCACCTTCTTCTAAGTCAAGAAATTCTAGCTTTCCTTCAAGTCCTGTATCAGGTAGTGGAAGTTCTAGTCTTCTTCCAAGCCCTACCACACCTTCCACATTGTTCTCTCAGTTAACTATTATGGAAGATGAAAAGAAACAAGGGTCTGTGATAAATGAAATAAACATAGAAGAAGAAGAGAAAGCTATCAAAGAGAGACGGTTTTATTTGCATCCATCACCCAGGTCTAAAGCAAGTGGCTTCAATGAACCAGAATTGCTTAACTTGTTTCCACTGGCATCTCCTAAGGCATGTGAGAAAGTATGA

Protein sequence

>Msa0541700

MGMEKPPVHGSTTGDCKPLTTFVHTNTGAFREVVQRLTGPSEGNATKEDQTTKVAPITKRTPPKLHERRKCMKPKLEIVKPNLQYHKQPGASPSSKSRNSSFPSSPVSGSGSSSLLPSPTTPSTLFSQLTIMEDEKKQGSVINEINIEEEEKAIKERRFYLHPSPRSKASGFNEPELLNLFPLASPKACEKV*