AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0560010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0560010 MtrunA17_Chr4g0049871 95.376 173 8 0 1 173 1 173 2.35e-124 348
Msa0560010 MtrunA17_Chr2g0279611 63.536 181 65 1 2 181 3 183 1.59e-84 248
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0560010 AT2G14110.1 68.125 160 51 0 5 164 4 163 2.48e-83 246
Msa0560010 AT2G14110.2 68.421 133 42 0 5 137 4 136 1.34e-68 207

Find 58 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATAACAGGTTTCAAATT+TGG 0.132575 4_1:-59241671 Msa0560010:intron
CAACCGTTCGCTTATATAAT+TGG 0.180368 4_1:-59242492 Msa0560010:five_prime_UTR
GGCTTAAATCTAGGAGTATT+TGG 0.194694 4_1:-59241622 Msa0560010:CDS
TTTGGGAGTTACAAGTATTT+TGG 0.197480 4_1:-59241653 Msa0560010:CDS
CAATAACAGGTTTCAAATTT+GGG 0.308384 4_1:-59241670 Msa0560010:intron
TTCGCTTATATAATTGGTTT+TGG 0.310728 4_1:-59242486 Msa0560010:five_prime_UTR
GTTAACAATGGCTTAAATCT+AGG 0.314102 4_1:-59241631 Msa0560010:CDS
CGATGGTCCTTATTATTTGT+TGG 0.332080 4_1:+59242457 None:intergenic
GTACATCCCAACAAATAATA+AGG 0.336358 4_1:-59242464 Msa0560010:five_prime_UTR
TCGATTTAGATTATACTCTT+TGG 0.338666 4_1:-59242325 Msa0560010:CDS
GATGGTCCTTATTATTTGTT+GGG 0.347588 4_1:+59242458 None:intergenic
AGAATATACATTCAATATAA+AGG 0.354244 4_1:+59242549 None:intergenic
CTTTCTCTCAAAGTGGATGA+TGG 0.395227 4_1:+59242432 None:intergenic
CAGAAAATTCATTCAAAGAC+CGG 0.400088 4_1:-59241855 Msa0560010:CDS
CACCTCAATGTTTGTCGCCC+AGG 0.413707 4_1:-59242041 Msa0560010:intron
GAAAGAAGAGATGGAGGAGG+TGG 0.415362 4_1:-59242414 Msa0560010:exon
CCAACCATGATGCTTGAGAT+TGG 0.417327 4_1:-59241511 Msa0560010:CDS
ATACTCTTTGGCCTTTCTAC+TGG 0.426381 4_1:-59242313 Msa0560010:intron
AGAGATGGAGGAGGTGGAGA+AGG 0.429450 4_1:-59242408 Msa0560010:exon
GCTGAGGCAGTGCAAATGAT+AGG 0.438625 4_1:-59242380 Msa0560010:CDS
AAACAATGTCATTTCTAGGC+TGG 0.467393 4_1:-59241238 Msa0560010:three_prime_UTR
TGATAACAATAACATGAAAC+CGG 0.472254 4_1:-59241799 Msa0560010:intron
GCTCAAAGAACAAGCAGAAA+AGG 0.474750 4_1:-59241565 Msa0560010:CDS
GAGTGCACTCAAGATGCCTC+TGG 0.487612 4_1:+59242147 None:intergenic
ATCTCTTCTTTCTCTCAAAG+TGG 0.490555 4_1:+59242425 None:intergenic
CAAAGAAGGTGTGTCGTGCT+TGG 0.497441 4_1:+59242180 None:intergenic
TATGTGTGGAGTTGGTGATT+TGG 0.498178 4_1:+59242093 None:intergenic
AATCTAGGAGTATTTGGAGA+AGG 0.524033 4_1:-59241616 Msa0560010:CDS
AGAGAAAGAAGAGATGGAGG+AGG 0.524195 4_1:-59242417 Msa0560010:exon
CTCAAGATGCCTCTGGAATG+TGG 0.524198 4_1:+59242154 None:intergenic
TTGAGTGCACTCAAAGATGA+AGG 0.526991 4_1:-59242136 Msa0560010:CDS
AAATCGAACACTACGAGCCT+TGG 0.527042 4_1:+59242341 None:intergenic
TGTGTATATATTACTCTCCA+TGG 0.530295 4_1:-59241426 Msa0560010:three_prime_UTR
GTACAAATTTACCAGTAGAA+AGG 0.530754 4_1:+59242302 None:intergenic
GGAGGAGGTGGAGAAGGTGA+AGG 0.537062 4_1:-59242402 Msa0560010:CDS
ATCTAGGAGTATTTGGAGAA+GGG 0.541922 4_1:-59241615 Msa0560010:CDS
TTGAGAGAAAGAAGAGATGG+AGG 0.549183 4_1:-59242420 Msa0560010:exon
GGTGGAGAAGGTGAAGGCTG+AGG 0.552861 4_1:-59242396 Msa0560010:CDS
ACTTTGAGAGAAAGAAGAGA+TGG 0.562452 4_1:-59242423 Msa0560010:exon
TAAGAAGACGAATGTGTGGA+GGG 0.566639 4_1:+59242515 None:intergenic
CTGGAATGTGGAAACAAAGA+AGG 0.568363 4_1:+59242166 None:intergenic
CCAATCTCAAGCATCATGGT+TGG 0.569748 4_1:+59241511 None:intergenic
GTTGTTGCTATGTGTGGAGT+TGG 0.571433 4_1:+59242085 None:intergenic
CATAGAGTTGTAGGGGACAC+CGG 0.577518 4_1:+59241836 None:intergenic
AAATACACAGAAAATTCACT+TGG 0.578953 4_1:+59241484 None:intergenic
ACATCCAATCTCAAGCATCA+TGG 0.585751 4_1:+59241507 None:intergenic
CAAAGTGGATGATGGATCGA+TGG 0.600898 4_1:+59242440 None:intergenic
AGTTGGTGATTTGGAAGCAA+TGG 0.603835 4_1:+59242102 None:intergenic
AGATACGTTGTTGCTATGTG+TGG 0.622048 4_1:+59242079 None:intergenic
GTAAGAAGACGAATGTGTGG+AGG 0.628554 4_1:+59242514 None:intergenic
AACCTGGGCGACAAACATTG+AGG 0.630045 4_1:+59242039 None:intergenic
AAACCAATTATATAAGCGAA+CGG 0.630900 4_1:+59242489 None:intergenic
ACACAAGTTCTAAGATGATG+TGG 0.641264 4_1:-59241343 Msa0560010:three_prime_UTR
TCTTTGTTTCCACATTCCAG+AGG 0.646314 4_1:-59242163 Msa0560010:CDS
AAAAGAGCATAGAGTTGTAG+GGG 0.649290 4_1:+59241829 None:intergenic
AAGGTGTGTCGTGCTTGGAG+CGG 0.652306 4_1:+59242185 None:intergenic
GTTGTAAGAAGACGAATGTG+TGG 0.670683 4_1:+59242511 None:intergenic
GAATGTTTCAAGTACTACCA+AGG 0.677669 4_1:-59242358 Msa0560010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTGTATGTATATTTTA+CGG - chr4_1:59241829-59241848 Msa0560010:CDS 10.0%
!! AAAAAAGAGAAATTAAATTT+GGG + chr4_1:59241870-59241889 None:intergenic 10.0%
!! TAAAAAAGAGAAATTAAATT+TGG + chr4_1:59241871-59241890 None:intergenic 10.0%
!!! TTATTTGTATGTATATTTTA+CGG - chr4_1:59241829-59241848 Msa0560010:CDS 10.0%
!! AAAAAAGAGAAATTAAATTT+GGG + chr4_1:59241870-59241889 None:intergenic 10.0%
!! TAAAAAAGAGAAATTAAATT+TGG + chr4_1:59241871-59241890 None:intergenic 10.0%
!! AGAATATACATTCAATATAA+AGG + chr4_1:59241247-59241266 None:intergenic 15.0%
!!! ATTTCTCTTTTTTATTGTTT+AGG - chr4_1:59241877-59241896 Msa0560010:CDS 15.0%
!! AACAAAATAAAATGATATAC+CGG + chr4_1:59242016-59242035 None:intergenic 15.0%
!! AGAATATACATTCAATATAA+AGG + chr4_1:59241247-59241266 None:intergenic 15.0%
!!! ATTTCTCTTTTTTATTGTTT+AGG - chr4_1:59241877-59241896 Msa0560010:CDS 15.0%
!! AACAAAATAAAATGATATAC+CGG + chr4_1:59242016-59242035 None:intergenic 15.0%
!!! GAATTTTCTGTGTATTTATA+TGG - chr4_1:59242315-59242334 Msa0560010:CDS 20.0%
!!! AATACTTGTTTTTTTATCTG+TGG + chr4_1:59242501-59242520 None:intergenic 20.0%
!!! GAAATGACATTGTTTTTTTA+GGG + chr4_1:59242550-59242569 None:intergenic 20.0%
!!! AGAAATGACATTGTTTTTTT+AGG + chr4_1:59242551-59242570 None:intergenic 20.0%
!!! AAAAAAACAATGTCATTTCT+AGG - chr4_1:59242551-59242570 Msa0560010:five_prime_UTR 20.0%
!!! GAATTTTCTGTGTATTTATA+TGG - chr4_1:59242315-59242334 Msa0560010:CDS 20.0%
!!! AATACTTGTTTTTTTATCTG+TGG + chr4_1:59242501-59242520 None:intergenic 20.0%
!!! GAAATGACATTGTTTTTTTA+GGG + chr4_1:59242550-59242569 None:intergenic 20.0%
!!! AGAAATGACATTGTTTTTTT+AGG + chr4_1:59242551-59242570 None:intergenic 20.0%
!!! AAAAAAACAATGTCATTTCT+AGG - chr4_1:59242551-59242570 Msa0560010:five_prime_UTR 20.0%
! AAACCAATTATATAAGCGAA+CGG + chr4_1:59241307-59241326 None:intergenic 25.0%
!!! TTCGCTTATATAATTGGTTT+TGG - chr4_1:59241307-59241326 Msa0560010:three_prime_UTR 25.0%
! TCGATTTAGATTATACTCTT+TGG - chr4_1:59241468-59241487 Msa0560010:CDS 25.0%
!! TTTTCATCTTTCCTATTTTC+TGG - chr4_1:59241524-59241543 Msa0560010:CDS 25.0%
! AAATAAGCGCAATAAAAAAG+CGG + chr4_1:59241815-59241834 None:intergenic 25.0%
! TGATAACAATAACATGAAAC+CGG - chr4_1:59241994-59242013 Msa0560010:intron 25.0%
!! CTCAAATTCTCTTATTTGTT+TGG - chr4_1:59242053-59242072 Msa0560010:CDS 25.0%
!! AAATTCTCTTATTTGTTTGG+AGG - chr4_1:59242056-59242075 Msa0560010:CDS 25.0%
! CAATAACAGGTTTCAAATTT+GGG - chr4_1:59242123-59242142 Msa0560010:CDS 25.0%
!!! ACAAGTATTTTGGTTAACAA+TGG - chr4_1:59242150-59242169 Msa0560010:CDS 25.0%
! AAATACACAGAAAATTCACT+TGG + chr4_1:59242312-59242331 None:intergenic 25.0%
! AAACCAATTATATAAGCGAA+CGG + chr4_1:59241307-59241326 None:intergenic 25.0%
!!! TTCGCTTATATAATTGGTTT+TGG - chr4_1:59241307-59241326 Msa0560010:three_prime_UTR 25.0%
! TCGATTTAGATTATACTCTT+TGG - chr4_1:59241468-59241487 Msa0560010:CDS 25.0%
!! TTTTCATCTTTCCTATTTTC+TGG - chr4_1:59241524-59241543 Msa0560010:CDS 25.0%
! AAATAAGCGCAATAAAAAAG+CGG + chr4_1:59241815-59241834 None:intergenic 25.0%
! TGATAACAATAACATGAAAC+CGG - chr4_1:59241994-59242013 Msa0560010:intron 25.0%
!! CTCAAATTCTCTTATTTGTT+TGG - chr4_1:59242053-59242072 Msa0560010:CDS 25.0%
!! AAATTCTCTTATTTGTTTGG+AGG - chr4_1:59242056-59242075 Msa0560010:CDS 25.0%
! CAATAACAGGTTTCAAATTT+GGG - chr4_1:59242123-59242142 Msa0560010:CDS 25.0%
!!! ACAAGTATTTTGGTTAACAA+TGG - chr4_1:59242150-59242169 Msa0560010:CDS 25.0%
! AAATACACAGAAAATTCACT+TGG + chr4_1:59242312-59242331 None:intergenic 25.0%
GTACATCCCAACAAATAATA+AGG - chr4_1:59241329-59241348 Msa0560010:three_prime_UTR 30.0%
GATGGTCCTTATTATTTGTT+GGG + chr4_1:59241338-59241357 None:intergenic 30.0%
GTACAAATTTACCAGTAGAA+AGG + chr4_1:59241494-59241513 None:intergenic 30.0%
CAGAAAATTCATTCAAAGAC+CGG - chr4_1:59241938-59241957 Msa0560010:intron 30.0%
! AAAAAGAGCATAGAGTTGTA+GGG + chr4_1:59241968-59241987 None:intergenic 30.0%
! CCAAATTTGAAACCTGTTAT+TGG + chr4_1:59242125-59242144 None:intergenic 30.0%
CCAATAACAGGTTTCAAATT+TGG - chr4_1:59242122-59242141 Msa0560010:CDS 30.0%
! TTTGGGAGTTACAAGTATTT+TGG - chr4_1:59242140-59242159 Msa0560010:CDS 30.0%
GTTAACAATGGCTTAAATCT+AGG - chr4_1:59242162-59242181 Msa0560010:CDS 30.0%
TGTGTATATATTACTCTCCA+TGG - chr4_1:59242367-59242386 Msa0560010:CDS 30.0%
! AATTTTATGCAATCATGCCA+TGG + chr4_1:59242387-59242406 None:intergenic 30.0%
GTACATCCCAACAAATAATA+AGG - chr4_1:59241329-59241348 Msa0560010:three_prime_UTR 30.0%
GATGGTCCTTATTATTTGTT+GGG + chr4_1:59241338-59241357 None:intergenic 30.0%
GTACAAATTTACCAGTAGAA+AGG + chr4_1:59241494-59241513 None:intergenic 30.0%
CAGAAAATTCATTCAAAGAC+CGG - chr4_1:59241938-59241957 Msa0560010:intron 30.0%
! AAAAAGAGCATAGAGTTGTA+GGG + chr4_1:59241968-59241987 None:intergenic 30.0%
! CCAAATTTGAAACCTGTTAT+TGG + chr4_1:59242125-59242144 None:intergenic 30.0%
CCAATAACAGGTTTCAAATT+TGG - chr4_1:59242122-59242141 Msa0560010:CDS 30.0%
! TTTGGGAGTTACAAGTATTT+TGG - chr4_1:59242140-59242159 Msa0560010:CDS 30.0%
GTTAACAATGGCTTAAATCT+AGG - chr4_1:59242162-59242181 Msa0560010:CDS 30.0%
TGTGTATATATTACTCTCCA+TGG - chr4_1:59242367-59242386 Msa0560010:CDS 30.0%
! AATTTTATGCAATCATGCCA+TGG + chr4_1:59242387-59242406 None:intergenic 30.0%
CAACCGTTCGCTTATATAAT+TGG - chr4_1:59241301-59241320 Msa0560010:three_prime_UTR 35.0%
CGATGGTCCTTATTATTTGT+TGG + chr4_1:59241339-59241358 None:intergenic 35.0%
ATCTCTTCTTTCTCTCAAAG+TGG + chr4_1:59241371-59241390 None:intergenic 35.0%
! ACTTTGAGAGAAAGAAGAGA+TGG - chr4_1:59241370-59241389 Msa0560010:three_prime_UTR 35.0%
! GAATGTTTCAAGTACTACCA+AGG - chr4_1:59241435-59241454 Msa0560010:exon 35.0%
TAGTGAGTACTCCAGAAAAT+AGG + chr4_1:59241538-59241557 None:intergenic 35.0%
ATTGAGGAACAAACAAACCT+GGG + chr4_1:59241772-59241791 None:intergenic 35.0%
! AAAAGAGCATAGAGTTGTAG+GGG + chr4_1:59241967-59241986 None:intergenic 35.0%
! GAAAAAGAGCATAGAGTTGT+AGG + chr4_1:59241969-59241988 None:intergenic 35.0%
!! TGATTTGTTGTGCCAATAAC+AGG - chr4_1:59242110-59242129 Msa0560010:CDS 35.0%
!! GGCTTAAATCTAGGAGTATT+TGG - chr4_1:59242171-59242190 Msa0560010:CDS 35.0%
!! AATCTAGGAGTATTTGGAGA+AGG - chr4_1:59242177-59242196 Msa0560010:CDS 35.0%
!! ATCTAGGAGTATTTGGAGAA+GGG - chr4_1:59242178-59242197 Msa0560010:CDS 35.0%
! TCACAAGATTTTCGCAAAAC+TGG - chr4_1:59242202-59242221 Msa0560010:intron 35.0%
! CACAAGATTTTCGCAAAACT+GGG - chr4_1:59242203-59242222 Msa0560010:intron 35.0%
!! ACACAAGTTCTAAGATGATG+TGG - chr4_1:59242450-59242469 Msa0560010:five_prime_UTR 35.0%
! AAACAATGTCATTTCTAGGC+TGG - chr4_1:59242555-59242574 Msa0560010:five_prime_UTR 35.0%
CAACCGTTCGCTTATATAAT+TGG - chr4_1:59241301-59241320 Msa0560010:three_prime_UTR 35.0%
CGATGGTCCTTATTATTTGT+TGG + chr4_1:59241339-59241358 None:intergenic 35.0%
ATCTCTTCTTTCTCTCAAAG+TGG + chr4_1:59241371-59241390 None:intergenic 35.0%
! ACTTTGAGAGAAAGAAGAGA+TGG - chr4_1:59241370-59241389 Msa0560010:three_prime_UTR 35.0%
! GAATGTTTCAAGTACTACCA+AGG - chr4_1:59241435-59241454 Msa0560010:exon 35.0%
TAGTGAGTACTCCAGAAAAT+AGG + chr4_1:59241538-59241557 None:intergenic 35.0%
ATTGAGGAACAAACAAACCT+GGG + chr4_1:59241772-59241791 None:intergenic 35.0%
! AAAAGAGCATAGAGTTGTAG+GGG + chr4_1:59241967-59241986 None:intergenic 35.0%
! GAAAAAGAGCATAGAGTTGT+AGG + chr4_1:59241969-59241988 None:intergenic 35.0%
!! TGATTTGTTGTGCCAATAAC+AGG - chr4_1:59242110-59242129 Msa0560010:CDS 35.0%
!! GGCTTAAATCTAGGAGTATT+TGG - chr4_1:59242171-59242190 Msa0560010:CDS 35.0%
!! AATCTAGGAGTATTTGGAGA+AGG - chr4_1:59242177-59242196 Msa0560010:CDS 35.0%
!! ATCTAGGAGTATTTGGAGAA+GGG - chr4_1:59242178-59242197 Msa0560010:CDS 35.0%
! TCACAAGATTTTCGCAAAAC+TGG - chr4_1:59242202-59242221 Msa0560010:intron 35.0%
! CACAAGATTTTCGCAAAACT+GGG - chr4_1:59242203-59242222 Msa0560010:intron 35.0%
!! ACACAAGTTCTAAGATGATG+TGG - chr4_1:59242450-59242469 Msa0560010:five_prime_UTR 35.0%
TAAGAAGACGAATGTGTGGA+GGG + chr4_1:59241281-59241300 None:intergenic 40.0%
GTTGTAAGAAGACGAATGTG+TGG + chr4_1:59241285-59241304 None:intergenic 40.0%
CTTTCTCTCAAAGTGGATGA+TGG + chr4_1:59241364-59241383 None:intergenic 40.0%
TTGAGAGAAAGAAGAGATGG+AGG - chr4_1:59241373-59241392 Msa0560010:three_prime_UTR 40.0%
! ATACTCTTTGGCCTTTCTAC+TGG - chr4_1:59241480-59241499 Msa0560010:CDS 40.0%
CTGGAATGTGGAAACAAAGA+AGG + chr4_1:59241630-59241649 None:intergenic 40.0%
! TCTTTGTTTCCACATTCCAG+AGG - chr4_1:59241630-59241649 Msa0560010:CDS 40.0%
TTGAGTGCACTCAAAGATGA+AGG - chr4_1:59241657-59241676 Msa0560010:CDS 40.0%
!! AGTTGGTGATTTGGAAGCAA+TGG + chr4_1:59241694-59241713 None:intergenic 40.0%
!! TATGTGTGGAGTTGGTGATT+TGG + chr4_1:59241703-59241722 None:intergenic 40.0%
AGATACGTTGTTGCTATGTG+TGG + chr4_1:59241717-59241736 None:intergenic 40.0%
CATTGAGGAACAAACAAACC+TGG + chr4_1:59241773-59241792 None:intergenic 40.0%
! CAGGTTTGTTTGTTCCTCAA+TGG - chr4_1:59241771-59241790 Msa0560010:intron 40.0%
AAGTGTTCGTCTTTCCATTG+AGG + chr4_1:59241788-59241807 None:intergenic 40.0%
GCTCAAAGAACAAGCAGAAA+AGG - chr4_1:59242228-59242247 Msa0560010:intron 40.0%
ACATCCAATCTCAAGCATCA+TGG + chr4_1:59242289-59242308 None:intergenic 40.0%
TAAGAAGACGAATGTGTGGA+GGG + chr4_1:59241281-59241300 None:intergenic 40.0%
GTTGTAAGAAGACGAATGTG+TGG + chr4_1:59241285-59241304 None:intergenic 40.0%
CTTTCTCTCAAAGTGGATGA+TGG + chr4_1:59241364-59241383 None:intergenic 40.0%
TTGAGAGAAAGAAGAGATGG+AGG - chr4_1:59241373-59241392 Msa0560010:three_prime_UTR 40.0%
! ATACTCTTTGGCCTTTCTAC+TGG - chr4_1:59241480-59241499 Msa0560010:CDS 40.0%
CTGGAATGTGGAAACAAAGA+AGG + chr4_1:59241630-59241649 None:intergenic 40.0%
! TCTTTGTTTCCACATTCCAG+AGG - chr4_1:59241630-59241649 Msa0560010:CDS 40.0%
TTGAGTGCACTCAAAGATGA+AGG - chr4_1:59241657-59241676 Msa0560010:CDS 40.0%
!! AGTTGGTGATTTGGAAGCAA+TGG + chr4_1:59241694-59241713 None:intergenic 40.0%
!! TATGTGTGGAGTTGGTGATT+TGG + chr4_1:59241703-59241722 None:intergenic 40.0%
AGATACGTTGTTGCTATGTG+TGG + chr4_1:59241717-59241736 None:intergenic 40.0%
CATTGAGGAACAAACAAACC+TGG + chr4_1:59241773-59241792 None:intergenic 40.0%
! CAGGTTTGTTTGTTCCTCAA+TGG - chr4_1:59241771-59241790 Msa0560010:intron 40.0%
AAGTGTTCGTCTTTCCATTG+AGG + chr4_1:59241788-59241807 None:intergenic 40.0%
GCTCAAAGAACAAGCAGAAA+AGG - chr4_1:59242228-59242247 Msa0560010:intron 40.0%
ACATCCAATCTCAAGCATCA+TGG + chr4_1:59242289-59242308 None:intergenic 40.0%
GTAAGAAGACGAATGTGTGG+AGG + chr4_1:59241282-59241301 None:intergenic 45.0%
!! CAAAGTGGATGATGGATCGA+TGG + chr4_1:59241356-59241375 None:intergenic 45.0%
AGAGAAAGAAGAGATGGAGG+AGG - chr4_1:59241376-59241395 Msa0560010:three_prime_UTR 45.0%
AAATCGAACACTACGAGCCT+TGG + chr4_1:59241455-59241474 None:intergenic 45.0%
GTTGTTGCTATGTGTGGAGT+TGG + chr4_1:59241711-59241730 None:intergenic 45.0%
CCAATCTCAAGCATCATGGT+TGG + chr4_1:59242285-59242304 None:intergenic 45.0%
CCAACCATGATGCTTGAGAT+TGG - chr4_1:59242282-59242301 Msa0560010:intron 45.0%
GTAAGAAGACGAATGTGTGG+AGG + chr4_1:59241282-59241301 None:intergenic 45.0%
!! CAAAGTGGATGATGGATCGA+TGG + chr4_1:59241356-59241375 None:intergenic 45.0%
AGAGAAAGAAGAGATGGAGG+AGG - chr4_1:59241376-59241395 Msa0560010:three_prime_UTR 45.0%
AAATCGAACACTACGAGCCT+TGG + chr4_1:59241455-59241474 None:intergenic 45.0%
GTTGTTGCTATGTGTGGAGT+TGG + chr4_1:59241711-59241730 None:intergenic 45.0%
CCAATCTCAAGCATCATGGT+TGG + chr4_1:59242285-59242304 None:intergenic 45.0%
CCAACCATGATGCTTGAGAT+TGG - chr4_1:59242282-59242301 Msa0560010:intron 45.0%
GAAAGAAGAGATGGAGGAGG+TGG - chr4_1:59241379-59241398 Msa0560010:three_prime_UTR 50.0%
GCTGAGGCAGTGCAAATGAT+AGG - chr4_1:59241413-59241432 Msa0560010:three_prime_UTR 50.0%
! CAAAGAAGGTGTGTCGTGCT+TGG + chr4_1:59241616-59241635 None:intergenic 50.0%
!! CTCAAGATGCCTCTGGAATG+TGG + chr4_1:59241642-59241661 None:intergenic 50.0%
AACCTGGGCGACAAACATTG+AGG + chr4_1:59241757-59241776 None:intergenic 50.0%
CATAGAGTTGTAGGGGACAC+CGG + chr4_1:59241960-59241979 None:intergenic 50.0%
GAAAGAAGAGATGGAGGAGG+TGG - chr4_1:59241379-59241398 Msa0560010:three_prime_UTR 50.0%
GCTGAGGCAGTGCAAATGAT+AGG - chr4_1:59241413-59241432 Msa0560010:three_prime_UTR 50.0%
! CAAAGAAGGTGTGTCGTGCT+TGG + chr4_1:59241616-59241635 None:intergenic 50.0%
!! CTCAAGATGCCTCTGGAATG+TGG + chr4_1:59241642-59241661 None:intergenic 50.0%
AACCTGGGCGACAAACATTG+AGG + chr4_1:59241757-59241776 None:intergenic 50.0%
CATAGAGTTGTAGGGGACAC+CGG + chr4_1:59241960-59241979 None:intergenic 50.0%
AGAGATGGAGGAGGTGGAGA+AGG - chr4_1:59241385-59241404 Msa0560010:three_prime_UTR 55.0%
AAGGTGTGTCGTGCTTGGAG+CGG + chr4_1:59241611-59241630 None:intergenic 55.0%
GAGTGCACTCAAGATGCCTC+TGG + chr4_1:59241649-59241668 None:intergenic 55.0%
CACCTCAATGTTTGTCGCCC+AGG - chr4_1:59241752-59241771 Msa0560010:intron 55.0%
AGAGATGGAGGAGGTGGAGA+AGG - chr4_1:59241385-59241404 Msa0560010:three_prime_UTR 55.0%
AAGGTGTGTCGTGCTTGGAG+CGG + chr4_1:59241611-59241630 None:intergenic 55.0%
GAGTGCACTCAAGATGCCTC+TGG + chr4_1:59241649-59241668 None:intergenic 55.0%
CACCTCAATGTTTGTCGCCC+AGG - chr4_1:59241752-59241771 Msa0560010:intron 55.0%
GGAGGAGGTGGAGAAGGTGA+AGG - chr4_1:59241391-59241410 Msa0560010:three_prime_UTR 60.0%
GGTGGAGAAGGTGAAGGCTG+AGG - chr4_1:59241397-59241416 Msa0560010:three_prime_UTR 60.0%
GGAGGAGGTGGAGAAGGTGA+AGG - chr4_1:59241391-59241410 Msa0560010:three_prime_UTR 60.0%
GGTGGAGAAGGTGAAGGCTG+AGG - chr4_1:59241397-59241416 Msa0560010:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 59241238 59242577 59241238 ID=Msa0560010;Name=Msa0560010
chr4_1 mRNA 59241238 59242577 59241238 ID=Msa0560010-mRNA-1;Parent=Msa0560010;Name=Msa0560010-mRNA-1;_AED=0.09;_eAED=0.09;_QI=151|1|1|1|1|1|4|215|210
chr4_1 exon 59241238 59241683 59241238 ID=Msa0560010-mRNA-1:exon:18296;Parent=Msa0560010-mRNA-1
chr4_1 exon 59241800 59241916 59241800 ID=Msa0560010-mRNA-1:exon:18295;Parent=Msa0560010-mRNA-1
chr4_1 exon 59242042 59242213 59242042 ID=Msa0560010-mRNA-1:exon:18294;Parent=Msa0560010-mRNA-1
chr4_1 exon 59242314 59242577 59242314 ID=Msa0560010-mRNA-1:exon:18293;Parent=Msa0560010-mRNA-1
chr4_1 five_prime_UTR 59242427 59242577 59242427 ID=Msa0560010-mRNA-1:five_prime_utr;Parent=Msa0560010-mRNA-1
chr4_1 CDS 59242314 59242426 59242314 ID=Msa0560010-mRNA-1:cds;Parent=Msa0560010-mRNA-1
chr4_1 CDS 59242042 59242213 59242042 ID=Msa0560010-mRNA-1:cds;Parent=Msa0560010-mRNA-1
chr4_1 CDS 59241800 59241916 59241800 ID=Msa0560010-mRNA-1:cds;Parent=Msa0560010-mRNA-1
chr4_1 CDS 59241453 59241683 59241453 ID=Msa0560010-mRNA-1:cds;Parent=Msa0560010-mRNA-1
chr4_1 three_prime_UTR 59241238 59241452 59241238 ID=Msa0560010-mRNA-1:three_prime_utr;Parent=Msa0560010-mRNA-1
Gene Sequence

>Msa0560010

ATGGAGGAGGTGGAGAAGGTGAAGGCTGAGGCAGTGCAAATGATAGGAATGTTTCAAGTACTACCAAGGCTCGTAGTGTTCGATTTAGATTATACTCTTTGGCCTTTCTACTGTGAGTGCCGCTCCAAGCACGACACACCTTCTTTGTTTCCACATTCCAGAGGCATCTTGAGTGCACTCAAAGATGAAGGAATTGATGCTGCCATTGCTTCCAAATCACCAACTCCACACATAGCAACAACGTATCTTGACAAACTCAAAATCACCTCAATGTTTGTCGCCCAGGAAATATTTTACAGCTCGACACACAAAACAGAACATTTTCAGAAAATTCATTCAAAGACCGGTGTCCCCTACAACTCTATGCTCTTTTTCGACGATGATAACAATAACATGAAACCGGTTTCAAATTTGGGAGTTACAAGTATTTTGGTTAACAATGGCTTAAATCTAGGAGTATTTGGAGAAGGGCTCACAAGATTTTCGCAAAACTGGGATGCTCAAAGAACAAGCAGAAAAGGCGCAAGTAATGTTCTCAGAAAGCATATTCTTCCAACCATGATGCTTGAGATTGGATGTCCAAGTGAATTTTCTGTGTATTTATATGGAATCTCATCAATATTGATGAATTGA

Protein sequence

>Msa0560010

MEEVEKVKAEAVQMIGMFQVLPRLVVFDLDYTLWPFYCECRSKHDTPSLFPHSRGILSALKDEGIDAAIASKSPTPHIATTYLDKLKITSMFVAQEIFYSSTHKTEHFQKIHSKTGVPYNSMLFFDDDNNNMKPVSNLGVTSILVNNGLNLGVFGEGLTRFSQNWDAQRTSRKGASNVLRKHILPTMMLEIGCPSEFSVYLYGISSILMN*