AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0967920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0967920 MtrunA17_Chr2g0331311 96.542 347 12 0 1 347 1 347 0.0 700
Msa0967920 MtrunA17_Chr7g0253651 66.867 332 109 1 16 346 17 348 1.35e-169 476
Msa0967920 MtrunA17_Chr2g0310111 62.500 328 121 2 17 344 21 346 1.96e-156 442
Msa0967920 MtrunA17_Chr8g0356981 65.549 328 110 3 16 343 14 338 4.05e-154 436
Msa0967920 MtrunA17_Chr2g0304231 58.095 315 131 1 27 341 30 343 1.06e-133 385
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0967920 AT3G12740.1 64.024 328 116 2 17 344 23 348 1.34e-156 443
Msa0967920 AT1G54320.1 62.805 328 120 2 17 344 22 347 4.89e-154 437
Msa0967920 AT1G79450.1 62.538 331 122 2 17 347 22 350 1.32e-152 433
Msa0967920 AT1G16360.2 62.006 329 123 2 16 344 21 347 5.83e-152 431
Msa0967920 AT1G16360.1 61.755 319 120 2 26 344 17 333 3.10e-146 416
Msa0967920 AT1G16360.4 60.855 304 117 2 26 329 17 318 6.13e-136 390
Msa0967920 AT1G79450.2 61.649 279 105 2 69 347 7 283 3.10e-124 358
Msa0967920 AT5G46150.1 52.632 342 157 3 1 341 1 338 2.09e-119 348
Msa0967920 AT5G46150.2 52.632 342 157 3 1 341 1 338 2.09e-119 348
Msa0967920 AT5G46150.3 52.727 330 154 2 1 329 1 329 2.91e-116 340
Msa0967920 AT1G16360.3 55.502 209 91 2 26 234 17 223 1.15e-79 243
Msa0967920 AT1G16360.5 55.502 209 91 2 26 234 17 223 1.15e-79 243
Msa0967920 AT5G46150.4 49.145 234 117 2 1 233 1 233 3.35e-74 229

Find 71 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATTTCATTGTTCAATAT+TGG 0.255001 6_3:+98028914 None:intergenic
AGGCATACATTTAGGTTTCT+TGG 0.257657 6_3:+98028664 None:intergenic
GGAATCATCTTTATCCCTAT+TGG 0.278510 6_3:-98028068 Msa0967920:CDS
CTATCCTTGTTCTGTGCTAT+AGG 0.299641 6_3:-98026484 Msa0967920:CDS
ATTGCCACATTTACTGCAAT+TGG 0.348370 6_3:-98028089 Msa0967920:CDS
TTTCAGAGTGGAGGTTTGAT+TGG 0.358409 6_3:-98027075 Msa0967920:CDS
ACCCATCCAGGTGTTAGAAT+TGG 0.365146 6_3:+98028341 None:intergenic
CTTGTAATATATTTGCATAA+AGG 0.374106 6_3:+98025986 None:intergenic
GTTGTCCATTGAAAATTTGT+AGG 0.382564 6_3:+98027182 None:intergenic
AACAATGATGCAAGACCAAT+AGG 0.394455 6_3:+98028053 None:intergenic
AACAAGAGGATCTGATTGTT+TGG 0.396536 6_3:-98026714 Msa0967920:CDS
TAACTGTAATGGAGTGGTTA+AGG 0.402936 6_3:+98028828 None:intergenic
GGGATTGCATACCTTGTTGT+TGG 0.410908 6_3:-98026511 Msa0967920:CDS
CAGAGTGGAGGTTTGATTGG+AGG 0.413776 6_3:-98027072 Msa0967920:CDS
CCAACTTTCAGAAAACTGTA+TGG 0.436379 6_3:-98026673 Msa0967920:CDS
ACAAGACTTGCACCCACAAA+TGG 0.438149 6_3:-98027835 Msa0967920:CDS
CAACTACAACTTGGATTGGT+GGG 0.445444 6_3:-98026549 Msa0967920:CDS
ATGAGGCCACAAGGAACAAT+TGG 0.445844 6_3:+98027228 None:intergenic
TTCCTTGTGGCCTCATTGCA+TGG 0.449722 6_3:-98027221 Msa0967920:CDS
TACAACACATACGAGTTTCA+AGG 0.464659 6_3:-98026592 Msa0967920:CDS
GTTAGAATTGGTTTCCATGC+AGG 0.464924 6_3:+98028353 None:intergenic
ATTGCATACCTTGTTGTTGG+TGG 0.482393 6_3:-98026508 Msa0967920:CDS
GTGGGTGCAAGTCTTGTTAG+TGG 0.484884 6_3:+98027841 None:intergenic
CTATCAACTACAACTTGGAT+TGG 0.485356 6_3:-98026553 Msa0967920:CDS
GGGATCCATCCTACTTATCA+TGG 0.488506 6_3:-98026141 Msa0967920:CDS
TTATCATGGAACAGAAATCC+AGG 0.490301 6_3:-98026127 Msa0967920:CDS
TGATGAAGTCATATCCATCA+TGG 0.492388 6_3:+98028724 None:intergenic
GTAGAAATGATAAGCAGTTG+TGG 0.499291 6_3:-98027314 Msa0967920:CDS
TTTGATAGTAATTATCAAGC+TGG 0.503169 6_3:+98027684 None:intergenic
ATTAAGTTACATTAACATGA+TGG 0.504743 6_3:+98028801 None:intergenic
CTGTTCCATGATAAGTAGGA+TGG 0.511626 6_3:+98026136 None:intergenic
ATTTCTGTTCCATGATAAGT+AGG 0.512059 6_3:+98026132 None:intergenic
GTTGCGGTGGGGAAATGAAA+TGG 0.512806 6_3:-98028938 None:intergenic
GTTTCAAGGTAGGAAGAAGT+TGG 0.512965 6_3:-98026578 Msa0967920:CDS
ACAATGATGCAAGACCAATA+GGG 0.513968 6_3:+98028054 None:intergenic
ACCAATTCTAACACCTGGAT+GGG 0.523126 6_3:-98028342 Msa0967920:intron
ATGATGGAGAATAACTGTAA+TGG 0.524774 6_3:+98028817 None:intergenic
GTGAAAGATCGCAACCATGA+TGG 0.527489 6_3:-98028738 Msa0967920:exon
TGGTTCTATCAACTACAACT+TGG 0.538526 6_3:-98026558 Msa0967920:CDS
ATGTACTAACAATCCATTTG+TGG 0.539027 6_3:+98027822 None:intergenic
CAACTTTCAGAAAACTGTAT+GGG 0.539444 6_3:-98026672 Msa0967920:CDS
TGTTAATACGAAATGATGAA+AGG 0.542675 6_3:+98028775 None:intergenic
GATATGACTTCATCAAAAGA+TGG 0.544518 6_3:-98028716 Msa0967920:CDS
AACCAATTCTAACACCTGGA+TGG 0.544797 6_3:-98028343 Msa0967920:CDS
GTTGCATATTATACCCATCC+AGG 0.548338 6_3:+98028329 None:intergenic
TCAACTACAACTTGGATTGG+TGG 0.549590 6_3:-98026550 Msa0967920:CDS
AACTGCATCTTTAGCATCAG+AGG 0.555713 6_3:+98027883 None:intergenic
AGTAGACAAAACAGAAGGAA+AGG 0.558583 6_3:-98027253 Msa0967920:CDS
TATACACTCATGTTCCATGT+TGG 0.563249 6_3:+98026024 None:intergenic
TTGTGGAGAAAGTCAGCTGA+AGG 0.563848 6_3:-98027297 Msa0967920:CDS
CTCCATGCAATGAGGCCACA+AGG 0.565861 6_3:+98027219 None:intergenic
GCATCAGTTGAGTGAACAAG+AGG 0.573104 6_3:-98026728 Msa0967920:intron
TGGAAACCAATTCTAACACC+TGG 0.581766 6_3:-98028347 Msa0967920:CDS
GAATCCTATAGCACAGAACA+AGG 0.595106 6_3:+98026480 None:intergenic
TATTGAACAATGAAATTGTG+CGG 0.595448 6_3:-98028910 Msa0967920:five_prime_UTR
ATTACTATCAAAATCATCGC+CGG 0.596581 6_3:-98027673 Msa0967920:intron
GATTCCAATTGCAGTAAATG+TGG 0.597750 6_3:+98028085 None:intergenic
TTCTGTATGTGATCAAGCCA+AGG 0.598227 6_3:-98026453 Msa0967920:intron
CACAGCAAGAACTACCTGCA+TGG 0.603633 6_3:-98028367 Msa0967920:CDS
AGTTCTTTGTGTGACCAACA+TGG 0.608600 6_3:-98026038 Msa0967920:three_prime_UTR
TGTACTAACAATCCATTTGT+GGG 0.623733 6_3:+98027823 None:intergenic
TATCATGGAACAGAAATCCA+GGG 0.639144 6_3:-98026126 Msa0967920:CDS
AGGATAGTCCACCAACAACA+AGG 0.647718 6_3:+98026500 None:intergenic
ACTGCATCTTTAGCATCAGA+GGG 0.648958 6_3:+98027884 None:intergenic
TGTGGAGAAAGTCAGCTGAA+GGG 0.651423 6_3:-98027296 Msa0967920:CDS
GATCCAGTAGACAAAACAGA+AGG 0.655095 6_3:-98027258 Msa0967920:CDS
TGAACATACTCCATGCAATG+AGG 0.658438 6_3:+98027211 None:intergenic
AAGGAGCCAATTGTTCCTTG+TGG 0.669710 6_3:-98027234 Msa0967920:CDS
ACACATACGAGTTTCAAGGT+AGG 0.677272 6_3:-98026588 Msa0967920:CDS
GGAGAATAACTGTAATGGAG+TGG 0.702814 6_3:+98028822 None:intergenic
AAGTAGGATGGATCCCCGAG+AGG 0.733345 6_3:+98026148 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTGTTTTTTTTTTTTTTT+TGG + chr6_3:98026360-98026379 None:intergenic 10.0%
!!! TTTAGACAAAAATTATATTT+TGG + chr6_3:98026660-98026679 None:intergenic 10.0%
!! ATAAAAATCTTGGAAAATTT+AGG - chr6_3:98026412-98026431 Msa0967920:intron 15.0%
!! TAAAAATCTTGGAAAATTTA+GGG - chr6_3:98026413-98026432 Msa0967920:intron 15.0%
!!! TATAATTTTTGTCTAAATCA+CGG - chr6_3:98026663-98026682 Msa0967920:CDS 15.0%
!!! CAACTGAATTTTATTTATAA+TGG - chr6_3:98026924-98026943 Msa0967920:intron 15.0%
!! ACTAATTATTATTTCCATTT+AGG + chr6_3:98027136-98027155 None:intergenic 15.0%
!! TTTATGTTAGGAAATTAATA+TGG - chr6_3:98028634-98028653 Msa0967920:intron 15.0%
!! ACAATTTCATTGTTCAATAT+TGG + chr6_3:98025981-98026000 None:intergenic 20.0%
!! ATTAAGTTACATTAACATGA+TGG + chr6_3:98026094-98026113 None:intergenic 20.0%
!!! ATTTTCCAAGATTTTTATAC+AGG + chr6_3:98026410-98026429 None:intergenic 20.0%
!! TATTAAGAAACTGTAAGAAA+TGG + chr6_3:98026735-98026754 None:intergenic 20.0%
!!! TTTATGTCTGTAATTTTATC+AGG - chr6_3:98026778-98026797 Msa0967920:intron 20.0%
!!! TTTTCATTTTCATACCTAAA+TGG - chr6_3:98027119-98027138 Msa0967920:CDS 20.0%
!!! ATTTTCAGTGTTATCAATTA+CGG - chr6_3:98027249-98027268 Msa0967920:CDS 20.0%
!! AACAAAAACAAATTTACTTG+AGG - chr6_3:98027457-98027476 Msa0967920:intron 20.0%
!! ATCATCCAAAATCATATTAA+AGG + chr6_3:98027535-98027554 None:intergenic 20.0%
!! AGTGACAAAAATTCTAAATT+TGG - chr6_3:98027772-98027791 Msa0967920:intron 20.0%
!! TTAAACTGTTTATCCAAATA+GGG + chr6_3:98027877-98027896 None:intergenic 20.0%
!! ATTAAACTGTTTATCCAAAT+AGG + chr6_3:98027878-98027897 None:intergenic 20.0%
!! GTTCTGATAAAATTTATGTT+AGG - chr6_3:98028622-98028641 Msa0967920:intron 20.0%
!! CTTGTAATATATTTGCATAA+AGG + chr6_3:98028909-98028928 None:intergenic 20.0%
! TATTGAACAATGAAATTGTG+CGG - chr6_3:98025982-98026001 Msa0967920:three_prime_UTR 25.0%
!!! TTGTTTGTTTTATCAAACGT+TGG + chr6_3:98026012-98026031 None:intergenic 25.0%
! TGTTAATACGAAATGATGAA+AGG + chr6_3:98026120-98026139 None:intergenic 25.0%
!! TTGGAAGTTTTCTTTGAATT+TGG + chr6_3:98026212-98026231 None:intergenic 25.0%
! CAAATTGTAAGTGCAAATTA+AGG + chr6_3:98026251-98026270 None:intergenic 25.0%
! GAATAATGAATCATTGTTTC+AGG + chr6_3:98026338-98026357 None:intergenic 25.0%
! TAATTAGTTGCAAACTTTAC+AGG - chr6_3:98027148-98027167 Msa0967920:CDS 25.0%
!! TTTGATAGTAATTATCAAGC+TGG + chr6_3:98027211-98027230 None:intergenic 25.0%
!! TGATGCCTTTAATATGATTT+TGG - chr6_3:98027527-98027546 Msa0967920:intron 25.0%
!! TATCCTAAAAATTTTCAGAG+TGG - chr6_3:98027805-98027824 Msa0967920:intron 25.0%
! ACTTATACGTAAGTACTTAT+AGG + chr6_3:98027916-98027935 None:intergenic 25.0%
!! TTGCTTATTTCTCAAGTAAA+AGG + chr6_3:98028127-98028146 None:intergenic 25.0%
!!! GCTTTTTCTATACTACTTTA+TGG - chr6_3:98028477-98028496 Msa0967920:intron 25.0%
!! AAGAAAAGCTGAAACATTTT+TGG - chr6_3:98028667-98028686 Msa0967920:intron 25.0%
! ATGATGGAGAATAACTGTAA+TGG + chr6_3:98026078-98026097 None:intergenic 30.0%
GATATGACTTCATCAAAAGA+TGG - chr6_3:98026176-98026195 Msa0967920:intron 30.0%
! GAAGTTTTCTTTGAATTTGG+AGG + chr6_3:98026209-98026228 None:intergenic 30.0%
GCAAATTAAGGCATACATTT+AGG + chr6_3:98026239-98026258 None:intergenic 30.0%
ACATCATAGGAAGAAAAAGA+AGG + chr6_3:98026313-98026332 None:intergenic 30.0%
!! ATTGTTTCAGGTTACATCAT+AGG + chr6_3:98026326-98026345 None:intergenic 30.0%
CATTTGTTCCTTGTGATTTA+CGG - chr6_3:98026382-98026401 Msa0967920:intron 30.0%
! AATTTTTGTCTAAATCACGG+TGG - chr6_3:98026666-98026685 Msa0967920:CDS 30.0%
GAAGTGCATGCTTAAATTAA+CGG + chr6_3:98026713-98026732 None:intergenic 30.0%
! TTGCATCATTGTTTTCATCA+GGG - chr6_3:98026849-98026868 Msa0967920:intron 30.0%
TGGTAAAGAAATACTAATGC+AGG - chr6_3:98026944-98026963 Msa0967920:intron 30.0%
TAAAGAAATACTAATGCAGG+TGG - chr6_3:98026947-98026966 Msa0967920:intron 30.0%
TGTACTAACAATCCATTTGT+GGG + chr6_3:98027072-98027091 None:intergenic 30.0%
ATGTACTAACAATCCATTTG+TGG + chr6_3:98027073-98027092 None:intergenic 30.0%
ATTACTATCAAAATCATCGC+CGG - chr6_3:98027219-98027238 Msa0967920:CDS 30.0%
! TGACACCTACAAATTTTCAA+TGG - chr6_3:98027705-98027724 Msa0967920:CDS 30.0%
GTTGTCCATTGAAAATTTGT+AGG + chr6_3:98027713-98027732 None:intergenic 30.0%
! CAAATTTTCAATGGACAACA+AGG - chr6_3:98027714-98027733 Msa0967920:CDS 30.0%
TCAACAAAAAGAACATAGCA+TGG - chr6_3:98027746-98027765 Msa0967920:intron 30.0%
CAACAAAAAGAACATAGCAT+GGG - chr6_3:98027747-98027766 Msa0967920:intron 30.0%
AACAAAAAGAACATAGCATG+GGG - chr6_3:98027748-98027767 Msa0967920:intron 30.0%
TTTCCATAAGCTCTTTCAAA+CGG - chr6_3:98028044-98028063 Msa0967920:CDS 30.0%
CAACTTTCAGAAAACTGTAT+GGG - chr6_3:98028220-98028239 Msa0967920:intron 30.0%
GCAAAATATTTCCTTTACCT+TGG + chr6_3:98028459-98028478 None:intergenic 30.0%
! TTGAATACGCTCTTTTCTAT+TGG - chr6_3:98028586-98028605 Msa0967920:intron 30.0%
ATTTCTGTTCCATGATAAGT+AGG + chr6_3:98028763-98028782 None:intergenic 30.0%
! TAACTGTAATGGAGTGGTTA+AGG + chr6_3:98026067-98026086 None:intergenic 35.0%
TGATGAAGTCATATCCATCA+TGG + chr6_3:98026171-98026190 None:intergenic 35.0%
! AGGCATACATTTAGGTTTCT+TGG + chr6_3:98026231-98026250 None:intergenic 35.0%
CGTAAATCACAAGGAACAAA+TGG + chr6_3:98026384-98026403 None:intergenic 35.0%
! TTAGTGCATGTTTGAAACCA+CGG - chr6_3:98026599-98026618 Msa0967920:CDS 35.0%
ATTGCCACATTTACTGCAAT+TGG - chr6_3:98026803-98026822 Msa0967920:intron 35.0%
GATTCCAATTGCAGTAAATG+TGG + chr6_3:98026810-98026829 None:intergenic 35.0%
GGAATCATCTTTATCCCTAT+TGG - chr6_3:98026824-98026843 Msa0967920:intron 35.0%
ACAATGATGCAAGACCAATA+GGG + chr6_3:98026841-98026860 None:intergenic 35.0%
AACAATGATGCAAGACCAAT+AGG + chr6_3:98026842-98026861 None:intergenic 35.0%
! CTTGCATCATTGTTTTCATC+AGG - chr6_3:98026848-98026867 Msa0967920:intron 35.0%
! ATCATTGTTTTCATCAGGGA+AGG - chr6_3:98026853-98026872 Msa0967920:intron 35.0%
AGCTGGTAGTAGATAAAAAC+AGG + chr6_3:98027194-98027213 None:intergenic 35.0%
AACACTGAAAATGTGCATAC+CGG + chr6_3:98027241-98027260 None:intergenic 35.0%
GTGTTATCAATTACGGATCA+CGG - chr6_3:98027256-98027275 Msa0967920:CDS 35.0%
GTAGAAATGATAAGCAGTTG+TGG - chr6_3:98027578-98027597 Msa0967920:intron 35.0%
! TTTCCTTCTGTTTTGTCTAC+TGG + chr6_3:98027640-98027659 None:intergenic 35.0%
AGTAGACAAAACAGAAGGAA+AGG - chr6_3:98027639-98027658 Msa0967920:intron 35.0%
!! CCTCCACTCTGAAAATTTTT+AGG + chr6_3:98027811-98027830 None:intergenic 35.0%
! CCTAAAAATTTTCAGAGTGG+AGG - chr6_3:98027808-98027827 Msa0967920:intron 35.0%
TTATCCAAATAGGGACTTAC+AGG + chr6_3:98027868-98027887 None:intergenic 35.0%
AACAAGAGGATCTGATTGTT+TGG - chr6_3:98028178-98028197 Msa0967920:intron 35.0%
!! CCATACAGTTTTCTGAAAGT+TGG + chr6_3:98028222-98028241 None:intergenic 35.0%
CCAACTTTCAGAAAACTGTA+TGG - chr6_3:98028219-98028238 Msa0967920:intron 35.0%
TACAACACATACGAGTTTCA+AGG - chr6_3:98028300-98028319 Msa0967920:intron 35.0%
! TGGTTCTATCAACTACAACT+TGG - chr6_3:98028334-98028353 Msa0967920:intron 35.0%
CTATCAACTACAACTTGGAT+TGG - chr6_3:98028339-98028358 Msa0967920:intron 35.0%
TGGTGGGAAAAATAGATTCT+TGG - chr6_3:98028359-98028378 Msa0967920:CDS 35.0%
GGTGGGAAAAATAGATTCTT+GGG - chr6_3:98028360-98028379 Msa0967920:CDS 35.0%
GTGGGAAAAATAGATTCTTG+GGG - chr6_3:98028361-98028380 Msa0967920:CDS 35.0%
TTATCATGGAACAGAAATCC+AGG - chr6_3:98028765-98028784 Msa0967920:five_prime_UTR 35.0%
TATCATGGAACAGAAATCCA+GGG - chr6_3:98028766-98028785 Msa0967920:five_prime_UTR 35.0%
!!! AGACATCATTTTAAGATCCC+TGG + chr6_3:98028786-98028805 None:intergenic 35.0%
TATACACTCATGTTCCATGT+TGG + chr6_3:98028871-98028890 None:intergenic 35.0%
! GGAGAATAACTGTAATGGAG+TGG + chr6_3:98026073-98026092 None:intergenic 40.0%
CGGAGCCTGTATAAAAATCT+TGG - chr6_3:98026402-98026421 Msa0967920:intron 40.0%
! CTTGGAAAATTTAGGGCTTG+AGG - chr6_3:98026420-98026439 Msa0967920:intron 40.0%
! GTTAGAATTGGTTTCCATGC+AGG + chr6_3:98026542-98026561 None:intergenic 40.0%
TGGAAACCAATTCTAACACC+TGG - chr6_3:98026545-98026564 Msa0967920:CDS 40.0%
AACCAATTCTAACACCTGGA+TGG - chr6_3:98026549-98026568 Msa0967920:CDS 40.0%
ACCAATTCTAACACCTGGAT+GGG - chr6_3:98026550-98026569 Msa0967920:CDS 40.0%
GTTGCATATTATACCCATCC+AGG + chr6_3:98026566-98026585 None:intergenic 40.0%
AGAAATACTAATGCAGGTGG+TGG - chr6_3:98026950-98026969 Msa0967920:intron 40.0%
ACTGCATCTTTAGCATCAGA+GGG + chr6_3:98027011-98027030 None:intergenic 40.0%
AACTGCATCTTTAGCATCAG+AGG + chr6_3:98027012-98027031 None:intergenic 40.0%
TCATTGAAAATCGTGCTGTG+TGG + chr6_3:98027437-98027456 None:intergenic 40.0%
! TTTTGTCTACTGGATCACAG+TGG + chr6_3:98027630-98027649 None:intergenic 40.0%
GATCCAGTAGACAAAACAGA+AGG - chr6_3:98027634-98027653 Msa0967920:intron 40.0%
TGAACATACTCCATGCAATG+AGG + chr6_3:98027684-98027703 None:intergenic 40.0%
TTTCAGAGTGGAGGTTTGAT+TGG - chr6_3:98027817-98027836 Msa0967920:intron 40.0%
CATACCTGTAAGTCCCTATT+TGG - chr6_3:98027861-98027880 Msa0967920:CDS 40.0%
TGACCGTTTGAAAGAGCTTA+TGG + chr6_3:98028050-98028069 None:intergenic 40.0%
ACACATACGAGTTTCAAGGT+AGG - chr6_3:98028304-98028323 Msa0967920:intron 40.0%
GTTTCAAGGTAGGAAGAAGT+TGG - chr6_3:98028314-98028333 Msa0967920:intron 40.0%
! TCAACTACAACTTGGATTGG+TGG - chr6_3:98028342-98028361 Msa0967920:intron 40.0%
!! CAACTACAACTTGGATTGGT+GGG - chr6_3:98028343-98028362 Msa0967920:CDS 40.0%
!! ATTGCATACCTTGTTGTTGG+TGG - chr6_3:98028384-98028403 Msa0967920:intron 40.0%
CTATCCTTGTTCTGTGCTAT+AGG - chr6_3:98028408-98028427 Msa0967920:intron 40.0%
GAATCCTATAGCACAGAACA+AGG + chr6_3:98028415-98028434 None:intergenic 40.0%
TTCTGTATGTGATCAAGCCA+AGG - chr6_3:98028439-98028458 Msa0967920:intron 40.0%
ATGTGATCAAGCCAAGGTAA+AGG - chr6_3:98028445-98028464 Msa0967920:intron 40.0%
CTGTTCCATGATAAGTAGGA+TGG + chr6_3:98028759-98028778 None:intergenic 40.0%
AGTTCTTTGTGTGACCAACA+TGG - chr6_3:98028854-98028873 Msa0967920:five_prime_UTR 40.0%
GTGAAAGATCGCAACCATGA+TGG - chr6_3:98026154-98026173 Msa0967920:intron 45.0%
TACAGGCTCCGTAAATCACA+AGG + chr6_3:98026393-98026412 None:intergenic 45.0%
ACCCATCCAGGTGTTAGAAT+TGG + chr6_3:98026554-98026573 None:intergenic 45.0%
TGATATTGTCAAACTCGCCG+TGG + chr6_3:98026619-98026638 None:intergenic 45.0%
ACAAGACTTGCACCCACAAA+TGG - chr6_3:98027057-98027076 Msa0967920:CDS 45.0%
TTGTGGAGAAAGTCAGCTGA+AGG - chr6_3:98027595-98027614 Msa0967920:intron 45.0%
TGTGGAGAAAGTCAGCTGAA+GGG - chr6_3:98027596-98027615 Msa0967920:intron 45.0%
AAGGAGCCAATTGTTCCTTG+TGG - chr6_3:98027658-98027677 Msa0967920:intron 45.0%
ATGAGGCCACAAGGAACAAT+TGG + chr6_3:98027667-98027686 None:intergenic 45.0%
GCATCAGTTGAGTGAACAAG+AGG - chr6_3:98028164-98028183 Msa0967920:intron 45.0%
! GGGATTGCATACCTTGTTGT+TGG - chr6_3:98028381-98028400 Msa0967920:CDS 45.0%
AGGATAGTCCACCAACAACA+AGG + chr6_3:98028395-98028414 None:intergenic 45.0%
! TGCTCTTTTTGCAGACCTCT+CGG - chr6_3:98028729-98028748 Msa0967920:exon 45.0%
GGGATCCATCCTACTTATCA+TGG - chr6_3:98028751-98028770 Msa0967920:five_prime_UTR 45.0%
CACAGCAAGAACTACCTGCA+TGG - chr6_3:98026525-98026544 Msa0967920:CDS 50.0%
!! GTGGGTGCAAGTCTTGTTAG+TGG + chr6_3:98027054-98027073 None:intergenic 50.0%
TTCCTTGTGGCCTCATTGCA+TGG - chr6_3:98027671-98027690 Msa0967920:intron 50.0%
CAGAGTGGAGGTTTGATTGG+AGG - chr6_3:98027820-98027839 Msa0967920:intron 50.0%
! GCTCTTTTTGCAGACCTCTC+GGG - chr6_3:98028730-98028749 Msa0967920:exon 50.0%
! CTCTTTTTGCAGACCTCTCG+GGG - chr6_3:98028731-98028750 Msa0967920:exon 50.0%
CTCCATGCAATGAGGCCACA+AGG + chr6_3:98027676-98027695 None:intergenic 55.0%
AAGTAGGATGGATCCCCGAG+AGG + chr6_3:98028747-98028766 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 98025962 98028952 98025962 ID=Msa0967920;Name=Msa0967920
chr6_3 mRNA 98025962 98028952 98025962 ID=Msa0967920-mRNA-1;Parent=Msa0967920;Name=Msa0967920-mRNA-1;_AED=0.06;_eAED=0.06;_QI=208|1|1|1|1|1|8|152|347
chr6_3 exon 98025962 98026171 98025962 ID=Msa0967920-mRNA-1:exon:18342;Parent=Msa0967920-mRNA-1
chr6_3 exon 98026454 98026743 98026454 ID=Msa0967920-mRNA-1:exon:18341;Parent=Msa0967920-mRNA-1
chr6_3 exon 98027047 98027347 98027047 ID=Msa0967920-mRNA-1:exon:18340;Parent=Msa0967920-mRNA-1
chr6_3 exon 98027674 98027744 98027674 ID=Msa0967920-mRNA-1:exon:18339;Parent=Msa0967920-mRNA-1
chr6_3 exon 98027832 98027948 98027832 ID=Msa0967920-mRNA-1:exon:18338;Parent=Msa0967920-mRNA-1
chr6_3 exon 98028040 98028114 98028040 ID=Msa0967920-mRNA-1:exon:18337;Parent=Msa0967920-mRNA-1
chr6_3 exon 98028343 98028401 98028343 ID=Msa0967920-mRNA-1:exon:18336;Parent=Msa0967920-mRNA-1
chr6_3 exon 98028672 98028952 98028672 ID=Msa0967920-mRNA-1:exon:18335;Parent=Msa0967920-mRNA-1
chr6_3 five_prime_UTR 98028745 98028952 98028745 ID=Msa0967920-mRNA-1:five_prime_utr;Parent=Msa0967920-mRNA-1
chr6_3 CDS 98028672 98028744 98028672 ID=Msa0967920-mRNA-1:cds;Parent=Msa0967920-mRNA-1
chr6_3 CDS 98028343 98028401 98028343 ID=Msa0967920-mRNA-1:cds;Parent=Msa0967920-mRNA-1
chr6_3 CDS 98028040 98028114 98028040 ID=Msa0967920-mRNA-1:cds;Parent=Msa0967920-mRNA-1
chr6_3 CDS 98027832 98027948 98027832 ID=Msa0967920-mRNA-1:cds;Parent=Msa0967920-mRNA-1
chr6_3 CDS 98027674 98027744 98027674 ID=Msa0967920-mRNA-1:cds;Parent=Msa0967920-mRNA-1
chr6_3 CDS 98027047 98027347 98027047 ID=Msa0967920-mRNA-1:cds;Parent=Msa0967920-mRNA-1
chr6_3 CDS 98026454 98026743 98026454 ID=Msa0967920-mRNA-1:cds;Parent=Msa0967920-mRNA-1
chr6_3 CDS 98026114 98026171 98026114 ID=Msa0967920-mRNA-1:cds;Parent=Msa0967920-mRNA-1
chr6_3 three_prime_UTR 98025962 98026113 98025962 ID=Msa0967920-mRNA-1:three_prime_utr;Parent=Msa0967920-mRNA-1
Gene Sequence

>Msa0967920

ATGATGGATATGACTTCATCAAAAGATGGACAATCTCCTCCAAATTCAAAGAAAACTTCCAAGAAACCTAAATATTCAAGATTCTCACAGCAAGAACTACCTGCATGGAAACCAATTCTAACACCTGGATGGGTGATTGCCACATTTACTGCAATTGGAATCATCTTTATCCCTATTGGTCTTGCATCATTGTTTTCATCAGGGAAGGTGGTGGAAGCTGAATTCAGATATGATGAAACGTGTCTTTCTCCCTCTGATGCTAAAGATGCAGTTGCATATATTAAAAGTGATACCACTAACAAGACTTGCACCCACAAATGGATTGTTGAGCAAAAAATGCAAGCTCCTGTTTTTATCTACTACCAGCTTGATAATTACTATCAAAATCATCGCCGATATGTTAAGAGTAGAAATGATAAGCAGTTGTGGAGAAAGTCAGCTGAAGGGCAAACAGACCACTGTGATCCAGTAGACAAAACAGAAGGAAAGGAGCCAATTGTTCCTTGTGGCCTCATTGCATGGAGTATGTTCAATGACACCTACAAATTTTCAATGGACAACAAGGATTTAACTGTCAACAAAAAGAACATAGCATGGGGAAGTGACAAAAATTCTAAATTTGGTCGTGAAGTTTATCCTAAAAATTTTCAGAGTGGAGGTTTGATTGGAGGTGCAAAACTCAATGAAAGCATACCTTTGAGTGAACAAGAGGATCTGATTGTTTGGATGAGAACAGCAGCATTACCAACTTTCAGAAAACTGTATGGGAAGATAGAGTCTGATCTTGAAGTTAATGATGAGATAGAAATACTAATTCAGAACAATTACAACACATACGAGTTTCAAGGTAGGAAGAAGTTGGTTCTATCAACTACAACTTGGATTGGTGGGAAAAATAGATTCTTGGGGATTGCATACCTTGTTGTTGGTGGACTATCCTTGTTCTGTGCTATAGGATTCATTCTTCTGTATGTGATCAAGCCAAGACCTCTCGGGGATCCATCCTACTTATCATGGAACAGAAATCCAGGGATCTTAAAATGA

Protein sequence

>Msa0967920

MMDMTSSKDGQSPPNSKKTSKKPKYSRFSQQELPAWKPILTPGWVIATFTAIGIIFIPIGLASLFSSGKVVEAEFRYDETCLSPSDAKDAVAYIKSDTTNKTCTHKWIVEQKMQAPVFIYYQLDNYYQNHRRYVKSRNDKQLWRKSAEGQTDHCDPVDKTEGKEPIVPCGLIAWSMFNDTYKFSMDNKDLTVNKKNIAWGSDKNSKFGREVYPKNFQSGGLIGGAKLNESIPLSEQEDLIVWMRTAALPTFRKLYGKIESDLEVNDEIEILIQNNYNTYEFQGRKKLVLSTTTWIGGKNRFLGIAYLVVGGLSLFCAIGFILLYVIKPRPLGDPSYLSWNRNPGILK*