AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1449510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1449510 MtrunA17_Chr4g0075251 100.000 327 0 0 80 406 644 970 0.0 678
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1449510 AT4G04350.1 78.086 324 71 0 80 403 647 970 0.0 547

Find 147 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATTAAAATTTCAATTT+TGG 0.095406 tig0032628:-29213 Msa1449510:three_prime_UTR
GAAATTCTTGTTACACTTCT+AGG 0.129437 tig0032628:+32891 None:intergenic
ATGCATTTACTCAATGTTTA+TGG 0.135462 tig0032628:-29009 Msa1449510:three_prime_UTR
AGATTGACCATCCAAATATT+TGG 0.193750 tig0032628:+29350 None:intergenic
CATTTCCTTCTTAGCTTCTT+TGG 0.198261 tig0032628:+32807 None:intergenic
TGAAAAGCTATCCAAATATT+TGG 0.222159 tig0032628:-29361 Msa1449510:CDS
ATGCCTCACAAGAAATTAAT+TGG 0.241436 tig0032628:+28828 None:intergenic
TGAATTGCAGGTTCAATATA+TGG 0.257449 tig0032628:-32136 Msa1449510:intron
GTCCTCCCAGTTCAGATTAA+TGG 0.266564 tig0032628:-29456 Msa1449510:CDS
TTTGTCTGATGGCACATTTA+AGG 0.277698 tig0032628:-31439 Msa1449510:CDS
AGAGCAGCAATAATGGTTTC+TGG 0.280217 tig0032628:-29055 Msa1449510:three_prime_UTR
GTTCCTTAATGCAGCATATA+AGG 0.313044 tig0032628:-31185 Msa1449510:intron
GCTTCCAAGCATAGGATGTT+AGG 0.317915 tig0032628:+32930 None:intergenic
TATTGGTAATATGCTATGTT+TGG 0.321197 tig0032628:-32868 Msa1449510:CDS
ATACCTTATATGCTGCATTA+AGG 0.326356 tig0032628:+31182 None:intergenic
TAGAAATAGAGCAGCAATAA+TGG 0.328095 tig0032628:-29062 Msa1449510:three_prime_UTR
TTCCATCTTTAGATATGCTT+TGG 0.328185 tig0032628:+29147 None:intergenic
AATATAACAAAGTAGCATAA+TGG 0.342533 tig0032628:+28571 None:intergenic
TTTGCATGATACTAGTGTTC+AGG 0.345752 tig0032628:-28718 Msa1449510:three_prime_UTR
GTCTTGCCATTAATCTGAAC+TGG 0.349758 tig0032628:+29450 None:intergenic
GGAGTGTAGGTCACAAAATC+TGG 0.353139 tig0032628:-31920 Msa1449510:intron
TCTCAGGTTCTCTTTGACAT+TGG 0.362378 tig0032628:-32299 Msa1449510:intron
ATTTGGATGGTCAATCTATC+AGG 0.375379 tig0032628:-29344 Msa1449510:CDS
TCGTTTATATGAAATGTTCA+TGG 0.378252 tig0032628:-31771 Msa1449510:CDS
ATGTTCATTTAACATATTAG+TGG 0.381440 tig0032628:+32074 None:intergenic
AAAGCCTCAACCACTGATCT+TGG 0.387519 tig0032628:+30601 None:intergenic
TTTCTATGATAACAGTCATA+TGG 0.389818 tig0032628:+29079 None:intergenic
GATGATGTCATTTCTGAGTA+TGG 0.392026 tig0032628:-31806 Msa1449510:CDS
CAACGAAGTTGTTCTATAGT+AGG 0.392214 tig0032628:+31390 None:intergenic
TTTGGTCTTTCAGTGGATAC+AGG 0.392628 tig0032628:+29165 None:intergenic
AACAACATTCAAAATCTTGC+CGG 0.394836 tig0032628:+29305 None:intergenic
AGGAAGAGAATTTATGTTCC+CGG 0.399476 tig0032628:-29324 Msa1449510:CDS
CACTGGAATTTCTGCAATGA+TGG 0.404997 tig0032628:-31209 Msa1449510:CDS
AGAAAGAATTTCTGAGGAAA+AGG 0.409623 tig0032628:-32046 Msa1449510:intron
ATATAACAAAGTAGCATAAT+GGG 0.410152 tig0032628:+28572 None:intergenic
AGCAATGCCTAACCATGATC+TGG 0.418157 tig0032628:+28793 None:intergenic
CAAGACAAGAGGTACCATTC+AGG 0.424680 tig0032628:-29433 Msa1449510:CDS
GCCTAACCATGATCTGGGTT+TGG 0.430168 tig0032628:+28799 None:intergenic
AATGAGAAGCATTTCCTCCT+TGG 0.431943 tig0032628:+32843 None:intergenic
TACTCAGAAATGACATCATC+AGG 0.432097 tig0032628:+31809 None:intergenic
GGAATGGATTTAGTCACGTT+AGG 0.434617 tig0032628:-28932 Msa1449510:three_prime_UTR
AGTTATTACAATGGACAATA+AGG 0.442107 tig0032628:+28985 None:intergenic
AGTCATATGGGATGAATACT+TGG 0.443832 tig0032628:+29092 None:intergenic
AGATCTGTGATGGTTACAAA+TGG 0.445032 tig0032628:-28745 Msa1449510:three_prime_UTR
TAAACCAGGGGATTATCCTT+GGG 0.448397 tig0032628:-32241 Msa1449510:CDS
AGTGTAACAAGAATTTCTAT+TGG 0.454344 tig0032628:-32885 Msa1449510:CDS
AGGTTCAATATATGGCTTGT+AGG 0.455087 tig0032628:-32128 Msa1449510:CDS
TACAACTTTGAAATTGTTAG+CGG 0.455977 tig0032628:+28603 None:intergenic
TTGCATGATACTAGTGTTCA+GGG 0.456623 tig0032628:-28717 Msa1449510:three_prime_UTR
CAAATTCATACCTTAGGAAA+AGG 0.456859 tig0032628:+30493 None:intergenic
GAATGGATTTAGTCACGTTA+GGG 0.460844 tig0032628:-28931 Msa1449510:three_prime_UTR
CAAGGGGTCTGTGATGATCT+AGG 0.461052 tig0032628:-28877 Msa1449510:three_prime_UTR
TTCTATGATAACAGTCATAT+GGG 0.462631 tig0032628:+29080 None:intergenic
TCAGTGGATACAGGGTAGTA+AGG 0.462757 tig0032628:+29174 None:intergenic
TAAGAAGGAAATGCTTATCA+AGG 0.465606 tig0032628:-32797 Msa1449510:CDS
GACACATTGGAAGGGCTCCT+TGG 0.468091 tig0032628:+32265 None:intergenic
TGGAATACTAGCGGCATTGA+AGG 0.474368 tig0032628:-31510 Msa1449510:CDS
GCATGTTTCTTCAACCTGAA+TGG 0.476124 tig0032628:+29419 None:intergenic
TGTTGTCCAAACCCAGATCA+TGG 0.476990 tig0032628:-28805 Msa1449510:three_prime_UTR
CTTTGTTGGCAACTTTGGAA+TGG 0.478312 tig0032628:-28948 Msa1449510:three_prime_UTR
ATAAACCAGGGGATTATCCT+TGG 0.483743 tig0032628:-32242 Msa1449510:CDS
GTCGTATCCTTCAGATAAGC+AGG 0.490254 tig0032628:+29483 None:intergenic
AGAACTTGGAGGTTGATTGT+TGG 0.493059 tig0032628:-31468 Msa1449510:CDS
GTTGGCTTACCTTTGTCTGA+TGG 0.495326 tig0032628:-31450 Msa1449510:CDS
CGTTTATATGAAATGTTCAT+GGG 0.496727 tig0032628:-31770 Msa1449510:CDS
TGGTTAGGCATTGCTACAAA+TGG 0.496784 tig0032628:-28785 Msa1449510:three_prime_UTR
CGGGCAAGTATACGTATGTC+AGG 0.496939 tig0032628:+31872 None:intergenic
CCCATAAAATGAGTAAAAGC+AGG 0.499228 tig0032628:-31847 Msa1449510:CDS
AAATCCTAACATCCTATGCT+TGG 0.501071 tig0032628:-32934 Msa1449510:CDS
GACCAAAGCATATCTAAAGA+TGG 0.501615 tig0032628:-29149 Msa1449510:three_prime_UTR
TCACACCAAAGAAGCTAAGA+AGG 0.506165 tig0032628:-32812 Msa1449510:CDS
CTGGTTTATGACACATTGGA+AGG 0.506702 tig0032628:+32256 None:intergenic
TCAGCCATGTGTGGCGCATA+TGG 0.506977 tig0032628:+30562 None:intergenic
AACAACATGTTCTTTCAAGC+AGG 0.512487 tig0032628:-32984 None:intergenic
ATATCTAAAGATGGAAGCAT+TGG 0.513084 tig0032628:-29140 Msa1449510:three_prime_UTR
TATACCGTGTACATTTCTAC+TGG 0.522029 tig0032628:-29240 Msa1449510:three_prime_UTR
GGTTCAATATATGGCTTGTA+GGG 0.523673 tig0032628:-32127 Msa1449510:CDS
TTGCAAAATCTCATTCGACT+TGG 0.524398 tig0032628:-28679 Msa1449510:three_prime_UTR
CATCCAATTAATTTCTTGTG+AGG 0.526153 tig0032628:-28831 Msa1449510:three_prime_UTR
CCCCTTGATGCAGATACAAA+AGG 0.527047 tig0032628:+28893 None:intergenic
ATATGCTATGTTTGGAGCCA+AGG 0.528430 tig0032628:-32860 Msa1449510:CDS
ATGCTTGGAAGCAAACTCTT+CGG 0.528683 tig0032628:-32919 Msa1449510:CDS
CTTCCAATGTGTCATAAACC+AGG 0.531145 tig0032628:-32255 Msa1449510:CDS
CACACATGGCTGAGGAGCTA+TGG 0.538021 tig0032628:-30552 Msa1449510:CDS
GATATGCTTTGGTCTTTCAG+TGG 0.538723 tig0032628:+29158 None:intergenic
AAGAGTTTGCTTCCAAGCAT+AGG 0.540735 tig0032628:+32922 None:intergenic
TTGGTCTTTCAGTGGATACA+GGG 0.541508 tig0032628:+29166 None:intergenic
ACATTGGAAGGGCTCCTTGG+TGG 0.546192 tig0032628:+32268 None:intergenic
CTCACAAGAAATTAATTGGA+TGG 0.547743 tig0032628:+28832 None:intergenic
CAGGTAACAGAGGAAATTGA+AGG 0.548038 tig0032628:-31244 Msa1449510:CDS
ACAACATTCAAAATCTTGCC+GGG 0.549727 tig0032628:+29306 None:intergenic
AACATGTTCTTTCAAGCAGG+TGG 0.552059 tig0032628:-32981 Msa1449510:CDS
CAAGGTCAAACCTACCTCAA+TGG 0.554861 tig0032628:+31746 None:intergenic
GAGGAGCTATGGTCTCGTCT+TGG 0.556746 tig0032628:-30541 Msa1449510:CDS
ACAACTTTGAAATTGTTAGC+GGG 0.558769 tig0032628:+28604 None:intergenic
CCTCCCCAAGGATAATCCCC+TGG 0.560132 tig0032628:+32237 None:intergenic
ACATCCAAGATCAGTGGTTG+AGG 0.564673 tig0032628:-30605 Msa1449510:CDS
GATCTGTGATGGTTACAAAT+GGG 0.566635 tig0032628:-28744 Msa1449510:three_prime_UTR
ATGGCTTGTAGGGATGAAGA+TGG 0.571425 tig0032628:-32117 Msa1449510:CDS
AAGAAGGAAATGCTTATCAA+GGG 0.575315 tig0032628:-32796 Msa1449510:CDS
AAGCTATCCAAATATTTGGA+TGG 0.575661 tig0032628:-29357 Msa1449510:CDS
CAGTGGATACAGGGTAGTAA+GGG 0.579006 tig0032628:+29175 None:intergenic
GCAATGCCTAACCATGATCT+GGG 0.579852 tig0032628:+28794 None:intergenic
AGATGATGTGTGCATGATGT+TGG 0.587310 tig0032628:+28628 None:intergenic
GGCAAATCCTGCTTATCTGA+AGG 0.587593 tig0032628:-29490 Msa1449510:CDS
TCCCCTGGTTTATGACACAT+TGG 0.591251 tig0032628:+32252 None:intergenic
TCTTGCCATTAATCTGAACT+GGG 0.598472 tig0032628:+29451 None:intergenic
GGGTCTGTGATGATCTAGGA+GGG 0.600615 tig0032628:-28873 Msa1449510:three_prime_UTR
TATAGTAGGTTCCTCATCAA+CGG 0.601768 tig0032628:+31404 None:intergenic
TCTTCATAAATGCATCGCTA+AGG 0.602895 tig0032628:-31367 Msa1449510:intron
TCTAGGAGGGGATCTCATGA+AGG 0.603060 tig0032628:-28860 Msa1449510:three_prime_UTR
ATCACCATATGCGCCACACA+TGG 0.603643 tig0032628:-30566 Msa1449510:CDS
TGATGTTGGCATGCATCGCA+CGG 0.604184 tig0032628:+28642 None:intergenic
CAGATTAATGGCAAGACAAG+AGG 0.609112 tig0032628:-29444 Msa1449510:CDS
TTTCAGTATTCAGGTAACAG+AGG 0.620541 tig0032628:-31254 Msa1449510:intron
TAGAACTGTATCCGTTGATG+AGG 0.620647 tig0032628:-31415 Msa1449510:CDS
TGGTTTATGACACATTGGAA+GGG 0.623525 tig0032628:+32257 None:intergenic
TAATCTAGAAAGAATTTCTG+AGG 0.627440 tig0032628:-32052 Msa1449510:CDS
TAATGCAAAAGCATCCTCCT+CGG 0.628072 tig0032628:+29395 None:intergenic
AAATGTTCATGGGACCATTG+AGG 0.629242 tig0032628:-31760 Msa1449510:intron
TTCCAATGTGTCATAAACCA+GGG 0.630548 tig0032628:-32254 Msa1449510:CDS
CCATAAAATGAGTAAAAGCA+GGG 0.631882 tig0032628:-31846 Msa1449510:CDS
TGCTATGTTTGGAGCCAAGG+AGG 0.636884 tig0032628:-32857 Msa1449510:CDS
TTAAATGTGCCATCAGACAA+AGG 0.639481 tig0032628:+31441 None:intergenic
ATATGCGCCACACATGGCTG+AGG 0.641382 tig0032628:-30560 Msa1449510:CDS
TTCCTAGAGACTCAAAGACA+TGG 0.642919 tig0032628:-31530 Msa1449510:intron
TGTGCTGAGCAGATCTGTGA+TGG 0.643555 tig0032628:-28755 Msa1449510:three_prime_UTR
GAAATGAAATTACCTCCCCA+AGG 0.647510 tig0032628:+32225 None:intergenic
CATAGCTCCTCAGCCATGTG+TGG 0.647558 tig0032628:+30553 None:intergenic
GCATTGCTACAAATGGCTGT+AGG 0.651861 tig0032628:-28778 Msa1449510:three_prime_UTR
AAACCAGGGGATTATCCTTG+GGG 0.656449 tig0032628:-32240 Msa1449510:CDS
TCCAAACCCAGATCATGGTT+AGG 0.656576 tig0032628:-28800 Msa1449510:three_prime_UTR
GGACAAACATCCAAGATCAG+TGG 0.665935 tig0032628:-30611 Msa1449510:CDS
TACCTTAGGAAAAGGCTCGT+AGG 0.668738 tig0032628:+30501 None:intergenic
TCCAATGTGTCATAAACCAG+GGG 0.669853 tig0032628:-32253 Msa1449510:CDS
GAAGGCACACGATTCAACAC+TGG 0.669921 tig0032628:-31226 Msa1449510:CDS
AGAAGGAAATGCTTATCAAG+GGG 0.672294 tig0032628:-32795 Msa1449510:CDS
GGGGTCTGTGATGATCTAGG+AGG 0.673579 tig0032628:-28874 Msa1449510:three_prime_UTR
GGTCTGTGATGATCTAGGAG+GGG 0.680080 tig0032628:-28872 Msa1449510:three_prime_UTR
CCAGGGGATTATCCTTGGGG+AGG 0.682877 tig0032628:-32237 Msa1449510:intron
TGAAGAAACATGCACCGAGG+AGG 0.685995 tig0032628:-29409 Msa1449510:CDS
CATAAAATGAGTAAAAGCAG+GGG 0.686594 tig0032628:-31845 Msa1449510:CDS
CATTGGTGTTGTATCCACCA+AGG 0.689119 tig0032628:-32282 Msa1449510:CDS
TCAAAGACATGGAATACTAG+CGG 0.696079 tig0032628:-31519 Msa1449510:CDS
TGCCATTAATCTGAACTGGG+AGG 0.720415 tig0032628:+29454 None:intergenic
GCTTCCAGTAGAAATGTACA+CGG 0.729643 tig0032628:+29236 None:intergenic
GGTTGAAGAAACATGCACCG+AGG 0.790617 tig0032628:-29412 Msa1449510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAGAAATAAATTAAAAAG+GGG + tig0032628:29874-29893 None:intergenic 10.0%
!! CATAAAGAAATAAATTAAAA+AGG + tig0032628:29876-29895 None:intergenic 10.0%
!!! CTTTTTAATTTATTTCTTTA+TGG - tig0032628:29874-29893 Msa1449510:intron 10.0%
!! AAAATAATTATGTAGTTATA+AGG + tig0032628:30602-30621 None:intergenic 10.0%
!!! TTCTTATAATTTTATGATAA+AGG - tig0032628:31674-31693 Msa1449510:intron 10.0%
!!! AATATTTTGAAATCTTTAAA+GGG - tig0032628:31913-31932 Msa1449510:CDS 10.0%
!!! AACAATTAAAATTTCAATTT+TGG - tig0032628:32311-32330 Msa1449510:intron 10.0%
!!! TGTATTAAGTTTTTATATTG+GGG + tig0032628:29011-29030 None:intergenic 15.0%
!!! GTGTATTAAGTTTTTATATT+GGG + tig0032628:29012-29031 None:intergenic 15.0%
!!! AGTGTATTAAGTTTTTATAT+TGG + tig0032628:29013-29032 None:intergenic 15.0%
!!! ATAAATTCACAATTTTCTAA+TGG - tig0032628:29363-29382 Msa1449510:CDS 15.0%
!!! TTTAATTTATTTCTTTATGG+TGG - tig0032628:29877-29896 Msa1449510:intron 15.0%
!!! AAAAATAGAAAATTTGCTTT+TGG + tig0032628:30507-30526 None:intergenic 15.0%
!!! TTTTTTATCTTATTCATGTT+TGG - tig0032628:30681-30700 Msa1449510:intron 15.0%
!! TGTGTAACATAATAAAATAT+TGG + tig0032628:31367-31386 None:intergenic 15.0%
!!! CAATATTTTGAAATCTTTAA+AGG - tig0032628:31912-31931 Msa1449510:CDS 15.0%
!!! ATATTTTGAAATCTTTAAAG+GGG - tig0032628:31914-31933 Msa1449510:CDS 15.0%
!! AAAAAACTAAGTTATTACAA+TGG + tig0032628:32551-32570 None:intergenic 15.0%
!!! TAGTTTTTTTTTTACTTTGT+TGG - tig0032628:32562-32581 Msa1449510:intron 15.0%
!! TTGGTACTAAAGAAAATTAT+TGG - tig0032628:28886-28905 Msa1449510:three_prime_UTR 20.0%
!!! GTTATTATTTAACTTCTAGA+AGG + tig0032628:29057-29076 None:intergenic 20.0%
!! ATGTTCATTTAACATATTAG+TGG + tig0032628:29453-29472 None:intergenic 20.0%
!!! TCATAATGTTGTTTTGATTA+AGG + tig0032628:29841-29860 None:intergenic 20.0%
!!! TATGATCTCTATATTTTTCT+TGG - tig0032628:30875-30894 Msa1449510:intron 20.0%
!! TCTCTAAATCTTTCTTAATA+GGG + tig0032628:31147-31166 None:intergenic 20.0%
!! ATCTCTAAATCTTTCTTAAT+AGG + tig0032628:31148-31167 None:intergenic 20.0%
!! TGATTTATGATAGAACATTA+TGG - tig0032628:31246-31265 Msa1449510:intron 20.0%
!!! AAATATTGGTTAGACATTAT+TGG + tig0032628:31353-31372 None:intergenic 20.0%
!!! ATATGTAAAAGCTATACTTT+TGG + tig0032628:31440-31459 None:intergenic 20.0%
!!! CTTTTACATATTTATCACAA+AGG - tig0032628:31449-31468 Msa1449510:CDS 20.0%
!!! TCATTTTCATAGTATCATTT+GGG + tig0032628:31751-31770 None:intergenic 20.0%
!!! TTCATTTTCATAGTATCATT+TGG + tig0032628:31752-31771 None:intergenic 20.0%
!! ACATTTAAATACTTATACTG+TGG - tig0032628:31849-31868 Msa1449510:CDS 20.0%
!!! TATTTTGAAATCTTTAAAGG+GGG - tig0032628:31915-31934 Msa1449510:intron 20.0%
!! ATATAACAAAGTAGCATAAT+GGG + tig0032628:32955-32974 None:intergenic 20.0%
!! AATATAACAAAGTAGCATAA+TGG + tig0032628:32956-32975 None:intergenic 20.0%
! AGTGTAACAAGAATTTCTAT+TGG - tig0032628:28639-28658 Msa1449510:three_prime_UTR 25.0%
!! TATTGGTAATATGCTATGTT+TGG - tig0032628:28656-28675 Msa1449510:three_prime_UTR 25.0%
!!! TTTTTAGTTTTCCAACTTCT+AGG - tig0032628:28784-28803 Msa1449510:three_prime_UTR 25.0%
! TTTAATGGAAATTCTTCGAT+TGG - tig0032628:28867-28886 Msa1449510:three_prime_UTR 25.0%
! TTAAATAATAACTGCCAACT+TGG - tig0032628:29065-29084 Msa1449510:three_prime_UTR 25.0%
! ATTGATAAATCCACCAATTA+GGG - tig0032628:29114-29133 Msa1449510:three_prime_UTR 25.0%
! AACTCATTTAAATCCCTAAT+TGG + tig0032628:29130-29149 None:intergenic 25.0%
! GGATTTAAATGAGTTCAATA+AGG - tig0032628:29135-29154 Msa1449510:three_prime_UTR 25.0%
! TAATCTAGAAAGAATTTCTG+AGG - tig0032628:29472-29491 Msa1449510:CDS 25.0%
! AAAGGTTCAAAATCTTAACT+CGG + tig0032628:29547-29566 None:intergenic 25.0%
! TCTTGTCAAGGAAAAAAAAA+AGG + tig0032628:29565-29584 None:intergenic 25.0%
! TCGTTTATATGAAATGTTCA+TGG - tig0032628:29753-29772 Msa1449510:intron 25.0%
! CGTTTATATGAAATGTTCAT+GGG - tig0032628:29754-29773 Msa1449510:intron 25.0%
! AATATATGCCACAAGTAATA+GGG + tig0032628:29806-29825 None:intergenic 25.0%
!! TTTATTTCTTTATGGTGGTA+TGG - tig0032628:29882-29901 Msa1449510:intron 25.0%
!! TTATTTCTTTATGGTGGTAT+GGG - tig0032628:29883-29902 Msa1449510:intron 25.0%
! ATCAAAGAGAAAATTGATGT+GGG + tig0032628:29956-29975 None:intergenic 25.0%
! AATCAAAGAGAAAATTGATG+TGG + tig0032628:29957-29976 None:intergenic 25.0%
!!! TTTTCTTGTGTCTTTGTTTA+TGG - tig0032628:30206-30225 Msa1449510:intron 25.0%
! AGAATTTACTTTCAGTATTC+AGG - tig0032628:30261-30280 Msa1449510:intron 25.0%
!!! GAACAATATTGATTTGTCTA+TGG - tig0032628:30410-30429 Msa1449510:intron 25.0%
!!! TATTGATTTGTCTATGGAAT+AGG - tig0032628:30416-30435 Msa1449510:intron 25.0%
!!! ATTGATTTGTCTATGGAATA+GGG - tig0032628:30417-30436 Msa1449510:intron 25.0%
!! TATGTAATATCTGTCTGTTT+TGG + tig0032628:30461-30480 None:intergenic 25.0%
!! TTATCACCTATGCAATTTTT+CGG + tig0032628:30566-30585 None:intergenic 25.0%
!!! TTTAGCTTTAATTGCAGTTT+CGG - tig0032628:30625-30644 Msa1449510:intron 25.0%
! CATCATATGTATATCCTATA+TGG - tig0032628:30739-30758 Msa1449510:intron 25.0%
! TGATGTACATTATACCATAT+AGG + tig0032628:30756-30775 None:intergenic 25.0%
! TTTATGAAGTGTATTGTGTT+TGG - tig0032628:30780-30799 Msa1449510:intron 25.0%
!! TTTTCCTAAGGTATGAATTT+GGG - tig0032628:31033-31052 Msa1449510:intron 25.0%
! ACTTAACAAATCATACCATT+AGG + tig0032628:31579-31598 None:intergenic 25.0%
! AAAAAAACACCAACACAAAT+AGG + tig0032628:31705-31724 None:intergenic 25.0%
!!! TTGTGTTGGTGTTTTTTTTT+TGG - tig0032628:31707-31726 Msa1449510:intron 25.0%
! AAATGTTTGTAAAAGACTTC+TGG + tig0032628:31835-31854 None:intergenic 25.0%
! ATTGAAATTTAAACACAACC+TGG + tig0032628:31949-31968 None:intergenic 25.0%
! TGAAAAGCTATCCAAATATT+TGG - tig0032628:32163-32182 Msa1449510:intron 25.0%
! TTCTATGATAACAGTCATAT+GGG + tig0032628:32447-32466 None:intergenic 25.0%
! TTTCTATGATAACAGTCATA+TGG + tig0032628:32448-32467 None:intergenic 25.0%
! ATGCATTTACTCAATGTTTA+TGG - tig0032628:32515-32534 Msa1449510:intron 25.0%
! AGTTATTACAATGGACAATA+AGG + tig0032628:32542-32561 None:intergenic 25.0%
!!! TACAACTTTGAAATTGTTAG+CGG + tig0032628:32924-32943 None:intergenic 25.0%
GAAATTCTTGTTACACTTCT+AGG + tig0032628:28636-28655 None:intergenic 30.0%
TAAGAAGGAAATGCTTATCA+AGG - tig0032628:28727-28746 Msa1449510:three_prime_UTR 30.0%
AAGAAGGAAATGCTTATCAA+GGG - tig0032628:28728-28747 Msa1449510:three_prime_UTR 30.0%
ACTATCACGAACTACTTTAA+TGG - tig0032628:28852-28871 Msa1449510:three_prime_UTR 30.0%
CCTTATCTTTAATCTAAGTG+GGG + tig0032628:28923-28942 None:intergenic 30.0%
GCCTTATCTTTAATCTAAGT+GGG + tig0032628:28924-28943 None:intergenic 30.0%
! AGCCTTATCTTTAATCTAAG+TGG + tig0032628:28925-28944 None:intergenic 30.0%
GATTGATAAATCCACCAATT+AGG - tig0032628:29113-29132 Msa1449510:three_prime_UTR 30.0%
TCATTTAAATCCCTAATTGG+TGG + tig0032628:29127-29146 None:intergenic 30.0%
! CAACACTAACAATTGGTAAT+AGG + tig0032628:29170-29189 None:intergenic 30.0%
CTATTACCAATTGTTAGTGT+TGG - tig0032628:29168-29187 Msa1449510:three_prime_UTR 30.0%
TTTCTTCTGCTTGAAATTTG+AGG - tig0032628:29318-29337 Msa1449510:CDS 30.0%
TTCTTCTGCTTGAAATTTGA+GGG - tig0032628:29319-29338 Msa1449510:CDS 30.0%
TTTCTAATGGTTTGAATTGC+AGG - tig0032628:29376-29395 Msa1449510:CDS 30.0%
TGAATTGCAGGTTCAATATA+TGG - tig0032628:29388-29407 Msa1449510:CDS 30.0%
! AGAAAGAATTTCTGAGGAAA+AGG - tig0032628:29478-29497 Msa1449510:CDS 30.0%
GGTAATATAAGTTCTTGTCA+AGG + tig0032628:29577-29596 None:intergenic 30.0%
! TTTTACTCATTTTATGGGCA+CGG + tig0032628:29675-29694 None:intergenic 30.0%
!! CCTGCTTTTACTCATTTTAT+GGG + tig0032628:29680-29699 None:intergenic 30.0%
CCATAAAATGAGTAAAAGCA+GGG - tig0032628:29678-29697 Msa1449510:intron 30.0%
CATAAAATGAGTAAAAGCAG+GGG - tig0032628:29679-29698 Msa1449510:intron 30.0%
CAATATATGCCACAAGTAAT+AGG + tig0032628:29807-29826 None:intergenic 30.0%
ATTACTTGTGGCATATATTG+TGG - tig0032628:29807-29826 Msa1449510:intron 30.0%
TATTTCTTTATGGTGGTATG+GGG - tig0032628:29884-29903 Msa1449510:intron 30.0%
TCAAAGAGAAAATTGATGTG+GGG + tig0032628:29955-29974 None:intergenic 30.0%
! TCTCTAGGAACATGTTAAAA+AGG + tig0032628:29984-30003 None:intergenic 30.0%
!!! ATCGTTTTTTAGGTAGAACT+TGG - tig0032628:30042-30061 Msa1449510:intron 30.0%
ATGGATTTAACAAGCTGATT+TGG - tig0032628:30225-30244 Msa1449510:intron 30.0%
ATACCTTATATGCTGCATTA+AGG + tig0032628:30345-30364 None:intergenic 30.0%
CTAAATCCGAAAAATTGCAT+AGG - tig0032628:30557-30576 Msa1449510:CDS 30.0%
TCCATAAGTGAGTGAAAATA+GGG + tig0032628:30653-30672 None:intergenic 30.0%
TTCCATAAGTGAGTGAAAAT+AGG + tig0032628:30654-30673 None:intergenic 30.0%
! TTTTCACTCACTTATGGAAT+TGG - tig0032628:30655-30674 Msa1449510:intron 30.0%
! TTCTTGGCATATATTTTCAG+TGG - tig0032628:30891-30910 Msa1449510:intron 30.0%
! TCTTGGCATATATTTTCAGT+GGG - tig0032628:30892-30911 Msa1449510:intron 30.0%
CAAATTCATACCTTAGGAAA+AGG + tig0032628:31034-31053 None:intergenic 30.0%
! CTTTTCCTAAGGTATGAATT+TGG - tig0032628:31032-31051 Msa1449510:intron 30.0%
TGAATAGGAATGGTTTGATA+TGG + tig0032628:31060-31079 None:intergenic 30.0%
AAACCATTCCTATTCATTCA+TGG - tig0032628:31064-31083 Msa1449510:intron 30.0%
GATTAATGAGTTAGATCGAA+TGG - tig0032628:31165-31184 Msa1449510:intron 30.0%
! TATTGGTTAGACATTATTGG+AGG + tig0032628:31350-31369 None:intergenic 30.0%
! AATTACTGATTGCGTCAAAT+AGG - tig0032628:31397-31416 Msa1449510:CDS 30.0%
! TGTAAAAGCTATACTTTTGG+TGG + tig0032628:31437-31456 None:intergenic 30.0%
!!! AGCGGTATTTTTTTTCCTAA+TGG - tig0032628:31561-31580 Msa1449510:intron 30.0%
!!! TTGCAACAATTTTTTCCTCT+TGG - tig0032628:31614-31633 Msa1449510:intron 30.0%
!!! TGCAACAATTTTTTCCTCTT+GGG - tig0032628:31615-31634 Msa1449510:intron 30.0%
AAGCTATCCAAATATTTGGA+TGG - tig0032628:32167-32186 Msa1449510:intron 30.0%
AGATTGACCATCCAAATATT+TGG + tig0032628:32177-32196 None:intergenic 30.0%
AACAACATTCAAAATCTTGC+CGG + tig0032628:32222-32241 None:intergenic 30.0%
! CAAGATTTTGAATGTTGTTC+TGG - tig0032628:32223-32242 Msa1449510:intron 30.0%
!! CACCAATCTTGATGTTTTTA+CGG + tig0032628:32250-32269 None:intergenic 30.0%
TTCCATCTTTAGATATGCTT+TGG + tig0032628:32380-32399 None:intergenic 30.0%
! ATATCTAAAGATGGAAGCAT+TGG - tig0032628:32384-32403 Msa1449510:intron 30.0%
TAGAAATAGAGCAGCAATAA+TGG - tig0032628:32462-32481 Msa1449510:intron 30.0%
! TTTTACTTTGTTGGCAACTT+TGG - tig0032628:32571-32590 Msa1449510:intron 30.0%
CTCACAAGAAATTAATTGGA+TGG + tig0032628:32695-32714 None:intergenic 30.0%
CATCCAATTAATTTCTTGTG+AGG - tig0032628:32693-32712 Msa1449510:intron 30.0%
ATGCCTCACAAGAAATTAAT+TGG + tig0032628:32699-32718 None:intergenic 30.0%
!! ACAACTTTGAAATTGTTAGC+GGG + tig0032628:32923-32942 None:intergenic 30.0%
AAATCCTAACATCCTATGCT+TGG - tig0032628:28590-28609 Msa1449510:three_prime_UTR 35.0%
CATTTCCTTCTTAGCTTCTT+TGG + tig0032628:28720-28739 None:intergenic 35.0%
AGAAGGAAATGCTTATCAAG+GGG - tig0032628:28729-28748 Msa1449510:three_prime_UTR 35.0%
GAAACTCATTTCCTAGAAGT+TGG + tig0032628:28798-28817 None:intergenic 35.0%
CCCCACTTAGATTAAAGATA+AGG - tig0032628:28920-28939 Msa1449510:three_prime_UTR 35.0%
ATAACCAACTTGTAAGGTGA+GGG + tig0032628:28974-28993 None:intergenic 35.0%
AATAACCAACTTGTAAGGTG+AGG + tig0032628:28975-28994 None:intergenic 35.0%
!! TCACCTTACAAGTTGGTTAT+TGG - tig0032628:28974-28993 Msa1449510:three_prime_UTR 35.0%
!! CACCTTACAAGTTGGTTATT+GGG - tig0032628:28975-28994 Msa1449510:three_prime_UTR 35.0%
!! ACCTTACAAGTTGGTTATTG+GGG - tig0032628:28976-28995 Msa1449510:three_prime_UTR 35.0%
ATTGCACCAACACTAACAAT+TGG + tig0032628:29177-29196 None:intergenic 35.0%
TGGTTTATGACACATTGGAA+GGG + tig0032628:29270-29289 None:intergenic 35.0%
TTCCAATGTGTCATAAACCA+GGG - tig0032628:29270-29289 Msa1449510:CDS 35.0%
! AGGTTCAATATATGGCTTGT+AGG - tig0032628:29396-29415 Msa1449510:CDS 35.0%
! GGTTCAATATATGGCTTGTA+GGG - tig0032628:29397-29416 Msa1449510:CDS 35.0%
GAACTTATATTACCTTTCCC+TGG - tig0032628:29583-29602 Msa1449510:intron 35.0%
! GTATGTCAGGATTTTCTTTC+AGG + tig0032628:29642-29661 None:intergenic 35.0%
! TTTACTCATTTTATGGGCAC+GGG + tig0032628:29674-29693 None:intergenic 35.0%
CCCATAAAATGAGTAAAAGC+AGG - tig0032628:29677-29696 Msa1449510:intron 35.0%
!! CCCTGCTTTTACTCATTTTA+TGG + tig0032628:29681-29700 None:intergenic 35.0%
TACTCAGAAATGACATCATC+AGG + tig0032628:29718-29737 None:intergenic 35.0%
! GATGATGTCATTTCTGAGTA+TGG - tig0032628:29718-29737 Msa1449510:intron 35.0%
TATTAGAACAAGATCACAGC+TGG + tig0032628:29921-29940 None:intergenic 35.0%
CTGTGATCTTGTTCTAATAC+AGG - tig0032628:29922-29941 Msa1449510:intron 35.0%
TCAAAGACATGGAATACTAG+CGG - tig0032628:30005-30024 Msa1449510:intron 35.0%
!!! GTTTTTTAGGTAGAACTTGG+AGG - tig0032628:30045-30064 Msa1449510:intron 35.0%
TTAAATGTGCCATCAGACAA+AGG + tig0032628:30086-30105 None:intergenic 35.0%
TTTGTCTGATGGCACATTTA+AGG - tig0032628:30085-30104 Msa1449510:intron 35.0%
TATAGTAGGTTCCTCATCAA+CGG + tig0032628:30123-30142 None:intergenic 35.0%
CAACGAAGTTGTTCTATAGT+AGG + tig0032628:30137-30156 None:intergenic 35.0%
TCTTCATAAATGCATCGCTA+AGG - tig0032628:30157-30176 Msa1449510:intron 35.0%
TTTCAGTATTCAGGTAACAG+AGG - tig0032628:30270-30289 Msa1449510:intron 35.0%
GTTCCTTAATGCAGCATATA+AGG - tig0032628:30339-30358 Msa1449510:intron 35.0%
!!! TTCCATTGTTTTTGCATCCA+AGG - tig0032628:30379-30398 Msa1449510:intron 35.0%
!!! TCCATTGTTTTTGCATCCAA+GGG - tig0032628:30380-30399 Msa1449510:intron 35.0%
ATATTGTTCGCTTATTCCCT+TGG + tig0032628:30399-30418 None:intergenic 35.0%
CCATAAGTGAGTGAAAATAG+GGG + tig0032628:30652-30671 None:intergenic 35.0%
AAGCCATGAATGAATAGGAA+TGG + tig0032628:31070-31089 None:intergenic 35.0%
TTGACAAGCCATGAATGAAT+AGG + tig0032628:31075-31094 None:intergenic 35.0%
! TAGATCGAATGGTGTCAATT+TGG - tig0032628:31176-31195 Msa1449510:intron 35.0%
ACGCAATCAGTAATTGTAGA+GGG + tig0032628:31392-31411 None:intergenic 35.0%
AAAAATACCGCTGTAAGTTG+TGG + tig0032628:31553-31572 None:intergenic 35.0%
TCATAGTATCATTTGGGCTT+AGG + tig0032628:31745-31764 None:intergenic 35.0%
ACATATAACAGACATGATCG+TGG + tig0032628:32004-32023 None:intergenic 35.0%
CTGTTATATGTTGTAACTGC+AGG - tig0032628:32013-32032 Msa1449510:intron 35.0%
TCTTGCCATTAATCTGAACT+GGG + tig0032628:32076-32095 None:intergenic 35.0%
! ATGCTTTTGCATTAGCATCT+AGG - tig0032628:32138-32157 Msa1449510:intron 35.0%
! TGCTTTTGCATTAGCATCTA+GGG - tig0032628:32139-32158 Msa1449510:intron 35.0%
ATTTGGATGGTCAATCTATC+AGG - tig0032628:32180-32199 Msa1449510:intron 35.0%
AGGAAGAGAATTTATGTTCC+CGG - tig0032628:32200-32219 Msa1449510:intron 35.0%
ACAACATTCAAAATCTTGCC+GGG + tig0032628:32221-32240 None:intergenic 35.0%
GACCGTAAAAACATCAAGAT+TGG - tig0032628:32245-32264 Msa1449510:CDS 35.0%
TATACCGTGTACATTTCTAC+TGG - tig0032628:32284-32303 Msa1449510:CDS 35.0%
GACCAAAGCATATCTAAAGA+TGG - tig0032628:32375-32394 Msa1449510:intron 35.0%
AGTCATATGGGATGAATACT+TGG + tig0032628:32435-32454 None:intergenic 35.0%
! GAATGGATTTAGTCACGTTA+GGG - tig0032628:32593-32612 Msa1449510:intron 35.0%
! AACCTTTTGTATCTGCATCA+AGG - tig0032628:32629-32648 Msa1449510:intron 35.0%
! ACCTTTTGTATCTGCATCAA+GGG - tig0032628:32630-32649 Msa1449510:intron 35.0%
AGATCTGTGATGGTTACAAA+TGG - tig0032628:32779-32798 Msa1449510:CDS 35.0%
GATCTGTGATGGTTACAAAT+GGG - tig0032628:32780-32799 Msa1449510:CDS 35.0%
TTTGCATGATACTAGTGTTC+AGG - tig0032628:32806-32825 Msa1449510:CDS 35.0%
TTGCATGATACTAGTGTTCA+GGG - tig0032628:32807-32826 Msa1449510:CDS 35.0%
TTGCAAAATCTCATTCGACT+TGG - tig0032628:32845-32864 Msa1449510:CDS 35.0%
! AAGAGTTTGCTTCCAAGCAT+AGG + tig0032628:28605-28624 None:intergenic 40.0%
ATGCTTGGAAGCAAACTCTT+CGG - tig0032628:28605-28624 Msa1449510:three_prime_UTR 40.0%
! ATATGCTATGTTTGGAGCCA+AGG - tig0032628:28664-28683 Msa1449510:three_prime_UTR 40.0%
!! AATGAGAAGCATTTCCTCCT+TGG + tig0032628:28684-28703 None:intergenic 40.0%
TCACACCAAAGAAGCTAAGA+AGG - tig0032628:28712-28731 Msa1449510:three_prime_UTR 40.0%
CTTTAATCTAAGTGGGGCTT+TGG + tig0032628:28917-28936 None:intergenic 40.0%
TCCCCAATAACCAACTTGTA+AGG + tig0032628:28980-28999 None:intergenic 40.0%
! TTAACCGAGTTTTGCATCTC+AGG - tig0032628:29209-29228 Msa1449510:three_prime_UTR 40.0%
AGAACCTGAGATGCAAAACT+CGG + tig0032628:29216-29235 None:intergenic 40.0%
TCTCAGGTTCTCTTTGACAT+TGG - tig0032628:29225-29244 Msa1449510:three_prime_UTR 40.0%
CTGGTTTATGACACATTGGA+AGG + tig0032628:29271-29290 None:intergenic 40.0%
CTTCCAATGTGTCATAAACC+AGG - tig0032628:29269-29288 Msa1449510:CDS 40.0%
TCCAATGTGTCATAAACCAG+GGG - tig0032628:29271-29290 Msa1449510:CDS 40.0%
ATAAACCAGGGGATTATCCT+TGG - tig0032628:29282-29301 Msa1449510:CDS 40.0%
TAAACCAGGGGATTATCCTT+GGG - tig0032628:29283-29302 Msa1449510:CDS 40.0%
GAAATGAAATTACCTCCCCA+AGG + tig0032628:29302-29321 None:intergenic 40.0%
! ATTTTGTGACCTACACTCCA+GGG + tig0032628:29603-29622 None:intergenic 40.0%
AAATGTTCATGGGACCATTG+AGG - tig0032628:29764-29783 Msa1449510:intron 40.0%
ACCTTGAACCCTATTACTTG+TGG - tig0032628:29795-29814 Msa1449510:intron 40.0%
GTGGCATATATTGTGGAGAT+TGG - tig0032628:29814-29833 Msa1449510:intron 40.0%
TTCCTAGAGACTCAAAGACA+TGG - tig0032628:29994-30013 Msa1449510:intron 40.0%
TTCCATGTCTTTGAGTCTCT+AGG + tig0032628:29999-30018 None:intergenic 40.0%
!!! GAAGGCGTACATCGTTTTTT+AGG - tig0032628:30032-30051 Msa1449510:intron 40.0%
! AGAACTTGGAGGTTGATTGT+TGG - tig0032628:30056-30075 Msa1449510:intron 40.0%
TAGAACTGTATCCGTTGATG+AGG - tig0032628:30109-30128 Msa1449510:intron 40.0%
CAGGTAACAGAGGAAATTGA+AGG - tig0032628:30280-30299 Msa1449510:intron 40.0%
CACTGGAATTTCTGCAATGA+TGG - tig0032628:30315-30334 Msa1449510:intron 40.0%
TCCCTTGGATGCAAAAACAA+TGG + tig0032628:30384-30403 None:intergenic 40.0%
! CCCCTATTTTCACTCACTTA+TGG - tig0032628:30649-30668 Msa1449510:intron 40.0%
AGAGAGAAGCGAAGGAAAAA+AGG + tig0032628:30841-30860 None:intergenic 40.0%
! CGTAGGCTAATGATTTTGTG+TGG + tig0032628:31009-31028 None:intergenic 40.0%
TGGACCCAAATTCATACCTT+AGG + tig0032628:31040-31059 None:intergenic 40.0%
! TCGAATGGTGTCAATTTGGA+TGG - tig0032628:31180-31199 Msa1449510:intron 40.0%
! CGAATGGTGTCAATTTGGAT+GGG - tig0032628:31181-31200 Msa1449510:intron 40.0%
GACGCAATCAGTAATTGTAG+AGG + tig0032628:31393-31412 None:intergenic 40.0%
TTGCGTCAAATAGGTATCTC+TGG - tig0032628:31406-31425 Msa1449510:CDS 40.0%
! TTACTCAAGTTGTTCCCAAG+AGG + tig0032628:31632-31651 None:intergenic 40.0%
AAGGCACAACCTATTTGTGT+TGG - tig0032628:31693-31712 Msa1449510:intron 40.0%
CTTATACTGTGGTTGTGAAG+AGG - tig0032628:31860-31879 Msa1449510:CDS 40.0%
! TTAAAGGGGGATGTTTTTCC+AGG - tig0032628:31928-31947 Msa1449510:intron 40.0%
GTCTTGCCATTAATCTGAAC+TGG + tig0032628:32077-32096 None:intergenic 40.0%
CAGATTAATGGCAAGACAAG+AGG - tig0032628:32080-32099 Msa1449510:CDS 40.0%
GCATGTTTCTTCAACCTGAA+TGG + tig0032628:32108-32127 None:intergenic 40.0%
!! TAATGCAAAAGCATCCTCCT+CGG + tig0032628:32132-32151 None:intergenic 40.0%
GCTTCCAGTAGAAATGTACA+CGG + tig0032628:32291-32310 None:intergenic 40.0%
! TTGGTCTTTCAGTGGATACA+GGG + tig0032628:32361-32380 None:intergenic 40.0%
! TTTGGTCTTTCAGTGGATAC+AGG + tig0032628:32362-32381 None:intergenic 40.0%
! GATATGCTTTGGTCTTTCAG+TGG + tig0032628:32369-32388 None:intergenic 40.0%
AGAGCAGCAATAATGGTTTC+TGG - tig0032628:32469-32488 Msa1449510:intron 40.0%
! CTTTGTTGGCAACTTTGGAA+TGG - tig0032628:32576-32595 Msa1449510:intron 40.0%
! GGAATGGATTTAGTCACGTT+AGG - tig0032628:32592-32611 Msa1449510:intron 40.0%
! CCTTTTGTATCTGCATCAAG+GGG - tig0032628:32631-32650 Msa1449510:intron 40.0%
! TGGTTAGGCATTGCTACAAA+TGG - tig0032628:32739-32758 Msa1449510:intron 40.0%
AGATGATGTGTGCATGATGT+TGG + tig0032628:32899-32918 None:intergenic 40.0%
GCTTCCAAGCATAGGATGTT+AGG + tig0032628:28597-28616 None:intergenic 45.0%
ACATCCCTCACCTTACAAGT+TGG - tig0032628:28967-28986 Msa1449510:three_prime_UTR 45.0%
!! CATTGGTGTTGTATCCACCA+AGG - tig0032628:29242-29261 Msa1449510:three_prime_UTR 45.0%
TCCCCTGGTTTATGACACAT+TGG + tig0032628:29275-29294 None:intergenic 45.0%
AAACCAGGGGATTATCCTTG+GGG - tig0032628:29284-29303 Msa1449510:CDS 45.0%
! ATGGCTTGTAGGGATGAAGA+TGG - tig0032628:29407-29426 Msa1449510:CDS 45.0%
ATTACCTTTCCCTGGAGTGT+AGG - tig0032628:29591-29610 Msa1449510:intron 45.0%
! GATTTTGTGACCTACACTCC+AGG + tig0032628:29604-29623 None:intergenic 45.0%
GGAGTGTAGGTCACAAAATC+TGG - tig0032628:29604-29623 Msa1449510:intron 45.0%
CAAGGTCAAACCTACCTCAA+TGG + tig0032628:29781-29800 None:intergenic 45.0%
GCCACAAGTAATAGGGTTCA+AGG + tig0032628:29799-29818 None:intergenic 45.0%
TTCTTTATGGTGGTATGGGG+AGG - tig0032628:29887-29906 Msa1449510:intron 45.0%
TCTTTATGGTGGTATGGGGA+GGG - tig0032628:29888-29907 Msa1449510:intron 45.0%
! TGGAATACTAGCGGCATTGA+AGG - tig0032628:30014-30033 Msa1449510:intron 45.0%
! GTTGGCTTACCTTTGTCTGA+TGG - tig0032628:30074-30093 Msa1449510:intron 45.0%
GGACAAACATCCAAGATCAG+TGG - tig0032628:30913-30932 Msa1449510:intron 45.0%
ACATCCAAGATCAGTGGTTG+AGG - tig0032628:30919-30938 Msa1449510:intron 45.0%
AAAGCCTCAACCACTGATCT+TGG + tig0032628:30926-30945 None:intergenic 45.0%
TACCTTAGGAAAAGGCTCGT+AGG + tig0032628:31026-31045 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + tig0032628:31295-31314 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + tig0032628:31296-31315 None:intergenic 45.0%
! TCAAGCCTTATCCCACTAAG+TGG + tig0032628:31297-31316 None:intergenic 45.0%
TACACAGCCACAACTTACAG+CGG - tig0032628:31543-31562 Msa1449510:intron 45.0%
GGTTGTGAAGAGGATCAATC+TGG - tig0032628:31870-31889 Msa1449510:CDS 45.0%
GGCAAATCCTGCTTATCTGA+AGG - tig0032628:32034-32053 Msa1449510:intron 45.0%
GTCGTATCCTTCAGATAAGC+AGG + tig0032628:32044-32063 None:intergenic 45.0%
GTCCTCCCAGTTCAGATTAA+TGG - tig0032628:32068-32087 Msa1449510:CDS 45.0%
TGCCATTAATCTGAACTGGG+AGG + tig0032628:32073-32092 None:intergenic 45.0%
!! CAAGACAAGAGGTACCATTC+AGG - tig0032628:32091-32110 Msa1449510:CDS 45.0%
CAGTGGATACAGGGTAGTAA+GGG + tig0032628:32352-32371 None:intergenic 45.0%
TCAGTGGATACAGGGTAGTA+AGG + tig0032628:32353-32372 None:intergenic 45.0%
CCCCTTGATGCAGATACAAA+AGG + tig0032628:32634-32653 None:intergenic 45.0%
TGTTGTCCAAACCCAGATCA+TGG - tig0032628:32719-32738 Msa1449510:intron 45.0%
TCCAAACCCAGATCATGGTT+AGG - tig0032628:32724-32743 Msa1449510:intron 45.0%
GCAATGCCTAACCATGATCT+GGG + tig0032628:32733-32752 None:intergenic 45.0%
AGCAATGCCTAACCATGATC+TGG + tig0032628:32734-32753 None:intergenic 45.0%
GCATTGCTACAAATGGCTGT+AGG - tig0032628:32746-32765 Msa1449510:intron 45.0%
!! ATAAAGAAATAAATTAAAAA+GGG + tig0032628:29875-29894 None:intergenic 5.0%
! TGCTATGTTTGGAGCCAAGG+AGG - tig0032628:28667-28686 Msa1449510:three_prime_UTR 50.0%
TGCCAACTTGGTTGAGTCGT+CGG - tig0032628:29077-29096 Msa1449510:three_prime_UTR 50.0%
CGGGCAAGTATACGTATGTC+AGG + tig0032628:29655-29674 None:intergenic 50.0%
GTTCATGGGACCATTGAGGT+AGG - tig0032628:29768-29787 Msa1449510:intron 50.0%
CTTTATGGTGGTATGGGGAG+GGG - tig0032628:29889-29908 Msa1449510:intron 50.0%
! GAAGGCACACGATTCAACAC+TGG - tig0032628:30298-30317 Msa1449510:intron 50.0%
CTCGTAACAGAGAGAAGCGA+AGG + tig0032628:30849-30868 None:intergenic 50.0%
ATCACCATATGCGCCACACA+TGG - tig0032628:30958-30977 Msa1449510:intron 50.0%
! AGCCTACGAGCCTTTTCCTA+AGG - tig0032628:31021-31040 Msa1449510:intron 50.0%
ACTAAGTGGGGTCAGCAACA+TGG + tig0032628:31283-31302 None:intergenic 50.0%
ATGTTGCTGACCCCACTTAG+TGG - tig0032628:31282-31301 Msa1449510:intron 50.0%
TGTTGCTGACCCCACTTAGT+GGG - tig0032628:31283-31302 Msa1449510:intron 50.0%
TGACCCCACTTAGTGGGATA+AGG - tig0032628:31289-31308 Msa1449510:intron 50.0%
GGTTGAAGAAACATGCACCG+AGG - tig0032628:32112-32131 Msa1449510:CDS 50.0%
TGAAGAAACATGCACCGAGG+AGG - tig0032628:32115-32134 Msa1449510:CDS 50.0%
CAAGGGGTCTGTGATGATCT+AGG - tig0032628:32647-32666 Msa1449510:intron 50.0%
GGGTCTGTGATGATCTAGGA+GGG - tig0032628:32651-32670 Msa1449510:intron 50.0%
GGTCTGTGATGATCTAGGAG+GGG - tig0032628:32652-32671 Msa1449510:intron 50.0%
TCTAGGAGGGGATCTCATGA+AGG - tig0032628:32664-32683 Msa1449510:intron 50.0%
GCCTAACCATGATCTGGGTT+TGG + tig0032628:32728-32747 None:intergenic 50.0%
TGTGCTGAGCAGATCTGTGA+TGG - tig0032628:32769-32788 Msa1449510:CDS 50.0%
TGATGTTGGCATGCATCGCA+CGG + tig0032628:32885-32904 None:intergenic 50.0%
AGCCGACGACTCAACCAAGT+TGG + tig0032628:29082-29101 None:intergenic 55.0%
ACATTGGAAGGGCTCCTTGG+TGG + tig0032628:29259-29278 None:intergenic 55.0%
GACACATTGGAAGGGCTCCT+TGG + tig0032628:29262-29281 None:intergenic 55.0%
GTGACCTACACTCCAGGGAA+AGG + tig0032628:29598-29617 None:intergenic 55.0%
TCAGCCATGTGTGGCGCATA+TGG + tig0032628:30965-30984 None:intergenic 55.0%
ATATGCGCCACACATGGCTG+AGG - tig0032628:30964-30983 Msa1449510:intron 55.0%
CATAGCTCCTCAGCCATGTG+TGG + tig0032628:30974-30993 None:intergenic 55.0%
CACACATGGCTGAGGAGCTA+TGG - tig0032628:30972-30991 Msa1449510:intron 55.0%
GAGGAGCTATGGTCTCGTCT+TGG - tig0032628:30983-31002 Msa1449510:intron 55.0%
GGGGTCTGTGATGATCTAGG+AGG - tig0032628:32650-32669 Msa1449510:intron 55.0%
CCTCCCCAAGGATAATCCCC+TGG + tig0032628:29290-29309 None:intergenic 60.0%
CCAGGGGATTATCCTTGGGG+AGG - tig0032628:29287-29306 Msa1449510:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0032628 gene 28546 33000 28546 ID=Msa1449510;Name=Msa1449510
tig0032628 mRNA 28546 33000 28546 ID=Msa1449510-mRNA-1;Parent=Msa1449510;Name=Msa1449510-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.85|0.75|0.87|1|1|8|723|406
tig0032628 exon 28546 29511 28546 ID=Msa1449510-mRNA-1:exon:16976;Parent=Msa1449510-mRNA-1
tig0032628 exon 30504 30635 30504 ID=Msa1449510-mRNA-1:exon:16975;Parent=Msa1449510-mRNA-1
tig0032628 exon 31186 31263 31186 ID=Msa1449510-mRNA-1:exon:16974;Parent=Msa1449510-mRNA-1
tig0032628 exon 31368 31545 31368 ID=Msa1449510-mRNA-1:exon:16973;Parent=Msa1449510-mRNA-1
tig0032628 exon 31761 31933 31761 ID=Msa1449510-mRNA-1:exon:16972;Parent=Msa1449510-mRNA-1
tig0032628 exon 32047 32148 32047 ID=Msa1449510-mRNA-1:exon:16971;Parent=Msa1449510-mRNA-1
tig0032628 exon 32238 32315 32238 ID=Msa1449510-mRNA-1:exon:16970;Parent=Msa1449510-mRNA-1
tig0032628 exon 32764 33000 32764 ID=Msa1449510-mRNA-1:exon:16969;Parent=Msa1449510-mRNA-1
tig0032628 CDS 32764 33000 32764 ID=Msa1449510-mRNA-1:cds;Parent=Msa1449510-mRNA-1
tig0032628 CDS 32238 32315 32238 ID=Msa1449510-mRNA-1:cds;Parent=Msa1449510-mRNA-1
tig0032628 CDS 32047 32148 32047 ID=Msa1449510-mRNA-1:cds;Parent=Msa1449510-mRNA-1
tig0032628 CDS 31761 31933 31761 ID=Msa1449510-mRNA-1:cds;Parent=Msa1449510-mRNA-1
tig0032628 CDS 31368 31545 31368 ID=Msa1449510-mRNA-1:cds;Parent=Msa1449510-mRNA-1
tig0032628 CDS 31186 31263 31186 ID=Msa1449510-mRNA-1:cds;Parent=Msa1449510-mRNA-1
tig0032628 CDS 30504 30635 30504 ID=Msa1449510-mRNA-1:cds;Parent=Msa1449510-mRNA-1
tig0032628 CDS 29269 29511 29269 ID=Msa1449510-mRNA-1:cds;Parent=Msa1449510-mRNA-1
tig0032628 three_prime_UTR 28546 29268 28546 ID=Msa1449510-mRNA-1:three_prime_utr;Parent=Msa1449510-mRNA-1
Gene Sequence

>Msa1449510

ATGTTCTTTCAAGCAGGTGGACAACAAAAAGTTGATGTTACACTAAATCCTAACATCCTATGCTTGGAAGCAAACTCTTCGGCTCAGCCTAGAAGTGTAACAAGAATTTCTATTGGTAATATGCTATGTTTGGAGCCAAGGAGGAAATGCTTCTCATTACTATATCTCACACCAAAGAAGCTAAGAAGGAAATGCTTATCAAGGGGTGTAGTTGTGAATTTTAAAGAGATTTGTTATGTTCTCTTTGACATTGGTGTTGTATCCACCAAGGAGCCCTTCCAATGTGTCATAAACCAGGGGATTATCCTTGGGGAGGTTCAATATATGGCTTGTAGGGATGAAGATGGAAATCTGATATCTGCTGATTCCACTAATATGTTAAATGAACATAATCTAGAAAGAATTTCTGAGGAAAAGGTCACAAAATCTGGAGATTCGTTTGTCCTGAAAGAAAATCCTGACATACGTATACTTGCCCGTGCCCATAAAATGAGTAAAAGCAGGGGAAATGTTGTTAATCCTGATGATGTCATTTCTGAGTATGGAGCAGATTCTCTTCGTTTATATGAAATGTTCATGGGACCATTGAGAGACTCAAAGACATGGAATACTAGCGGCATTGAAGGCGTACATCGTTTTTTAGGTAGAACTTGGAGGTTGATTGTTGGCTTACCTTTGTCTGATGGCACATTTAAGGATAGAACTGTATCCGTTGATGAGGAACCTACTATAGAACAACTTCGTTGTCTTCATAAATGCATCGCTAAGGTAACAGAGGAAATTGAAGGCACACGATTCAACACTGGAATTTCTGCAATGATGGAGTTCCTTAATGCAGCATATAAGTGGGACAAACATCCAAGATCAGTGGTTGAGGCTTTTGTTTTGCTGTTATCACCATATGCGCCACACATGGCTGAGGAGCTATGGTCTCGTCTTGGCCACACAAAATCATTAGCCTACGAGCCTTTTCCTAAGGCAAATCCTGCTTATCTGAAGGATACGACAGTAGTCCTCCCAGTTCAGATTAATGGCAAGACAAGAGGTACCATTCAGGTTGAAGAAACATGCACCGAGGAGGATGCTTTTGCATTAGCATCTAGGGATGAAAAGCTATCCAAATATTTGGATGGTCAATCTATCAGGAAGAGAATTTATGTTCCCGGCAAGATTTTGAATGTTGTTCTGGACCGTAAAAACATCAAGATTGGTGTACAGTAG

Protein sequence

>Msa1449510

MFFQAGGQQKVDVTLNPNILCLEANSSAQPRSVTRISIGNMLCLEPRRKCFSLLYLTPKKLRRKCLSRGVVVNFKEICYVLFDIGVVSTKEPFQCVINQGIILGEVQYMACRDEDGNLISADSTNMLNEHNLERISEEKVTKSGDSFVLKENPDIRILARAHKMSKSRGNVVNPDDVISEYGADSLRLYEMFMGPLRDSKTWNTSGIEGVHRFLGRTWRLIVGLPLSDGTFKDRTVSVDEEPTIEQLRCLHKCIAKVTEEIEGTRFNTGISAMMEFLNAAYKWDKHPRSVVEAFVLLLSPYAPHMAEELWSRLGHTKSLAYEPFPKANPAYLKDTTVVLPVQINGKTRGTIQVEETCTEEDAFALASRDEKLSKYLDGQSIRKRIYVPGKILNVVLDRKNIKIGVQ*