AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0880370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0880370 MtrunA17_Chr8g0386421 92.642 299 12 2 1 291 1 297 0.0 524
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0880370 AT2G32500.2 57.353 272 111 3 24 291 6 276 2.78e-107 313
Msa0880370 AT2G32500.1 56.459 209 86 3 24 228 6 213 1.84e-75 230

Find 78 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTATCTGTTTATTGTTTC+GGG 0.115077 6_1:-26929315 Msa0880370:three_prime_UTR
TCCTTACATCTTTGTATTCT+TGG 0.139609 6_1:+26930139 None:intergenic
CTGCTATCTGTTTATTGTTT+CGG 0.203560 6_1:-26929316 Msa0880370:three_prime_UTR
TTACATGCGGTTTCAGAAAA+AGG 0.210570 6_1:-26931518 Msa0880370:CDS
AATGAAGAGACAGTGATTTC+AGG 0.265594 6_1:+26929667 None:intergenic
CTTGAGAACCTTCAAGTAAA+AGG 0.266883 6_1:+26931468 None:intergenic
ACTCTCATCTGATTCTTCTT+TGG 0.275343 6_1:+26932462 None:intergenic
TATACTCCTTAGAGCTTTCA+TGG 0.280782 6_1:+26930309 None:intergenic
TAATACCACCCATTTGATAC+TGG 0.287395 6_1:+26932181 None:intergenic
TTTCCACTCACAAGTTCTTT+TGG 0.299688 6_1:-26929455 Msa0880370:three_prime_UTR
GGTATTATTGCTATTTCATT+AGG 0.307379 6_1:-26932165 Msa0880370:intron
GGAACATGCACTGGCATCTC+TGG 0.334936 6_1:-26930575 Msa0880370:CDS
AATGCATTAGCGAGCTAAAA+AGG 0.335331 6_1:-26932722 Msa0880370:five_prime_UTR
TGAAAAGGTTACACTGTGTT+AGG 0.360808 6_1:+26929230 None:intergenic
TTTCCTCTGAGAAGCGAGAT+TGG 0.373152 6_1:+26932413 None:intergenic
TCATCTGATTCTTCTTTGGT+TGG 0.376105 6_1:+26932466 None:intergenic
GAGAAGCGAGATTGGAGCTT+TGG 0.392038 6_1:+26932421 None:intergenic
TTCTTAAAGCTCAATGTGTC+TGG 0.392150 6_1:-26929341 Msa0880370:three_prime_UTR
GAATTTCCATGAAAGCTCTA+AGG 0.406314 6_1:-26930315 Msa0880370:CDS
AAAACTTTCCTATGGCAATT+GGG 0.428568 6_1:+26929389 None:intergenic
AAAATAAAATTATATTGAAA+AGG 0.440829 6_1:+26929215 None:intergenic
GACAGTGATTTCAGGACAAT+AGG 0.441297 6_1:+26929675 None:intergenic
TCATTTAATGAGGGTACCTT+AGG 0.442429 6_1:-26930607 Msa0880370:CDS
TTTCTGAAACCGCATGTAAA+CGG 0.443161 6_1:+26931522 None:intergenic
CATTTCTCTGTTGATCCAGT+GGG 0.450126 6_1:-26929648 Msa0880370:CDS
GGCTCTTGAATCCATTCCAC+TGG 0.451282 6_1:+26932487 None:intergenic
AAAGGTAAAGATAGAGGTGT+TGG 0.454888 6_1:+26932612 None:intergenic
AAGGTAAAGATAGAGGTGTT+GGG 0.456800 6_1:+26932613 None:intergenic
TCTTTACCTTTACCTTTACA+AGG 0.459528 6_1:-26932600 Msa0880370:CDS
GTACACAACCCAGTATCAAA+TGG 0.466541 6_1:-26932190 Msa0880370:CDS
ATCTCGCTTCTCAGAGGAAA+AGG 0.472916 6_1:-26932410 Msa0880370:intron
TCATTTCTCTGTTGATCCAG+TGG 0.484155 6_1:-26929649 Msa0880370:CDS
AAAGGTAAAGGTAAAGATAG+AGG 0.496541 6_1:+26932606 None:intergenic
TTGTGTAAATTGTACTATCA+AGG 0.504240 6_1:+26930528 None:intergenic
ATGTCAAAATCAAACCTTCA+AGG 0.507168 6_1:-26929277 Msa0880370:three_prime_UTR
ACGGCATGAGTATAGTGGTC+AGG 0.516130 6_1:+26931541 None:intergenic
TGTAAACGGCATGAGTATAG+TGG 0.519619 6_1:+26931536 None:intergenic
AATACCACCCATTTGATACT+GGG 0.530236 6_1:+26932182 None:intergenic
TAACCAGGCGGAACATGCAC+TGG 0.530562 6_1:-26930584 Msa0880370:CDS
TAACTGTCTGGACCTTGTAA+AGG 0.530646 6_1:+26932588 None:intergenic
TACACAACCCAGTATCAAAT+GGG 0.530800 6_1:-26932189 Msa0880370:CDS
GTAGTGATACGATTCCGATC+AGG 0.536411 6_1:-26930278 Msa0880370:intron
ATGCCAGTGCATGTTCCGCC+TGG 0.536544 6_1:+26930581 None:intergenic
TCTGGACCTTGTAAAGGTAA+AGG 0.536544 6_1:+26932594 None:intergenic
AGCTCTAAGGAGTATACTCA+TGG 0.540924 6_1:-26930302 Msa0880370:CDS
GCAATTGGGTTTCAGAATGT+CGG 0.544545 6_1:+26929403 None:intergenic
TTGTGAGTGGAAATAGAAGC+AGG 0.552159 6_1:+26929465 None:intergenic
GTGATTTCAGGACAATAGGC+TGG 0.558184 6_1:+26929679 None:intergenic
ATCTCTGGCAACAGTGATGT+TGG 0.558570 6_1:-26930560 Msa0880370:CDS
TACATAAGCTCAGTTCCCAC+TGG 0.566469 6_1:+26929633 None:intergenic
CGAAACAATAAACAGATAGC+AGG 0.568699 6_1:+26929317 None:intergenic
TTGTCTGCTAAAAGCAAAGG+AGG 0.570007 6_1:-26932253 Msa0880370:CDS
TGTGGCCAGGAGTTCAGCCA+TGG 0.572033 6_1:-26930652 Msa0880370:intron
ATGTTCCGCCTGGTTACCTA+AGG 0.573483 6_1:+26930591 None:intergenic
AAAGAATAAACTCCACTCCA+TGG 0.578056 6_1:+26930635 None:intergenic
ATGATTTATATATTTCGCAA+AGG 0.580470 6_1:-26931274 Msa0880370:CDS
AGGTAAAGATAGAGGTGTTG+GGG 0.581375 6_1:+26932614 None:intergenic
CCAGGAGTTCAGCCATGGAG+TGG 0.591915 6_1:-26930647 Msa0880370:intron
TTTCTACATGAATTGTGACT+GGG 0.592766 6_1:-26929523 Msa0880370:three_prime_UTR
TGAGGGTACCTTAGGTAACC+AGG 0.595164 6_1:-26930599 Msa0880370:CDS
GTAAATTGTACTATCAAGGA+AGG 0.603275 6_1:+26930532 None:intergenic
TTCTGAAACCCAATTGCCAT+AGG 0.610330 6_1:-26929397 Msa0880370:three_prime_UTR
ATACTCATGCCGTTTACATG+CGG 0.618288 6_1:-26931531 Msa0880370:CDS
TTATATATTTCGCAAAGGAG+AGG 0.620757 6_1:-26931269 Msa0880370:intron
CATTTGTCTGCTAAAAGCAA+AGG 0.624906 6_1:-26932256 Msa0880370:CDS
AAAGGAGGGATTATCTGAAG+AGG 0.627071 6_1:-26932238 Msa0880370:CDS
TTCGTGTAGAAGAAAAGTTG+TGG 0.627662 6_1:-26932283 Msa0880370:intron
TGAGATTGGGATAACCTGAT+CGG 0.630126 6_1:+26930264 None:intergenic
TAGCCAAAAGAACTTGTGAG+TGG 0.632547 6_1:+26929452 None:intergenic
TGTCTGCTAAAAGCAAAGGA+GGG 0.635547 6_1:-26932252 Msa0880370:CDS
GGAACTGAGCTTATGTAGTG+AGG 0.643018 6_1:-26929627 Msa0880370:exon
GCTCCAATCTCGCTTCTCAG+AGG 0.670450 6_1:-26932416 Msa0880370:CDS
GGTGTTGGGGTGAATTGACG+AGG 0.673613 6_1:+26932627 None:intergenic
GCTGCGTATAAATATCTCGA+AGG 0.686766 6_1:+26930161 None:intergenic
TTGATAGTACAATTTACACA+AGG 0.690159 6_1:-26930526 Msa0880370:intron
ACAACCCAGTATCAAATGGG+TGG 0.704834 6_1:-26932186 Msa0880370:CDS
GTGTTGGGGTGAATTGACGA+GGG 0.732265 6_1:+26932628 None:intergenic
GGGTACCTTAGGTAACCAGG+CGG 0.811298 6_1:-26930596 Msa0880370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTTTTTTTATAATAGA+TGG + chr6_1:26929943-26929962 None:intergenic 10.0%
!! CTATTATAAAAAAAAAAACA+AGG - chr6_1:26929944-26929963 Msa0880370:intron 10.0%
!! AATATAAACTAAACTATATT+TGG - chr6_1:26932147-26932166 Msa0880370:intron 10.0%
!! TTATTACTTATTACTGTATT+AGG - chr6_1:26929518-26929537 Msa0880370:three_prime_UTR 15.0%
!!! TATCTATTTTTTTCAACATT+AGG - chr6_1:26930086-26930105 Msa0880370:intron 15.0%
!! TTATTCTAACAGTAATTATT+TGG - chr6_1:26931171-26931190 Msa0880370:intron 15.0%
!! TATTCTAACAGTAATTATTT+GGG - chr6_1:26931172-26931191 Msa0880370:intron 15.0%
!! GTTATTAATATTTAATTGTC+AGG - chr6_1:26931538-26931557 Msa0880370:CDS 15.0%
!! TATAATTCAGAATATTTGTT+TGG - chr6_1:26931881-26931900 Msa0880370:intron 15.0%
!! ATAATTCAGAATATTTGTTT+GGG - chr6_1:26931882-26931901 Msa0880370:intron 15.0%
!!! ATTTCAGTTTTTATTTTTGA+AGG + chr6_1:26932084-26932103 None:intergenic 15.0%
!!! AATACATCATATTTTTCTAT+TGG - chr6_1:26932711-26932730 Msa0880370:five_prime_UTR 15.0%
!! TAATCATAATGACATGAAAA+TGG + chr6_1:26929554-26929573 None:intergenic 20.0%
!!! AGAACATTTACTTTGTTATT+AGG - chr6_1:26929777-26929796 Msa0880370:intron 20.0%
!!! ACAAGGTTAGTTTAATATTT+AGG - chr6_1:26929961-26929980 Msa0880370:intron 20.0%
!! ATTTGAATTCAAATGTTACT+CGG + chr6_1:26930059-26930078 None:intergenic 20.0%
!! AAAATAAAGGAAAAGAGAAT+CGG + chr6_1:26930482-26930501 None:intergenic 20.0%
!!! ACCTTTACTAATTTTGTTTT+AGG - chr6_1:26930541-26930560 Msa0880370:CDS 20.0%
!!! CCTTTACTAATTTTGTTTTA+GGG - chr6_1:26930542-26930561 Msa0880370:CDS 20.0%
!! ATGATTTATATATTTCGCAA+AGG - chr6_1:26930605-26930624 Msa0880370:CDS 20.0%
!! TTACTGTTAGAATAAAATAC+TGG + chr6_1:26931166-26931185 None:intergenic 20.0%
!! ATTCTAACAGTAATTATTTG+GGG - chr6_1:26931173-26931192 Msa0880370:intron 20.0%
!!! TCTTTTGATATCATTTAATG+AGG - chr6_1:26931262-26931281 Msa0880370:intron 20.0%
!!! CTTTTGATATCATTTAATGA+GGG - chr6_1:26931263-26931282 Msa0880370:intron 20.0%
!! ATTATATAGTTTACAGGAAA+GGG + chr6_1:26931867-26931886 None:intergenic 20.0%
!! AATTATATAGTTTACAGGAA+AGG + chr6_1:26931868-26931887 None:intergenic 20.0%
!! TTCTGAATTATATAGTTTAC+AGG + chr6_1:26931873-26931892 None:intergenic 20.0%
!! TAATTCAGAATATTTGTTTG+GGG - chr6_1:26931883-26931902 Msa0880370:intron 20.0%
!! AACTAAACTATATTTGGATT+TGG - chr6_1:26932153-26932172 Msa0880370:intron 20.0%
!!! GGTATTATTGCTATTTCATT+AGG - chr6_1:26929714-26929733 Msa0880370:intron 25.0%
! ATTCTAGATGAAATTCATGT+GGG + chr6_1:26929865-26929884 None:intergenic 25.0%
!!! ATTAAACTAGAGAAGTGTTA+AGG + chr6_1:26929917-26929936 None:intergenic 25.0%
!! AGTTTTCATAGAACTTTTCA+AGG + chr6_1:26930391-26930410 None:intergenic 25.0%
! TGAGAGTAACAGAAAAATAA+AGG + chr6_1:26930495-26930514 None:intergenic 25.0%
! CCCTAAAACAAAATTAGTAA+AGG + chr6_1:26930545-26930564 None:intergenic 25.0%
!!! GTTTTAGGGATTAATTAATG+TGG - chr6_1:26930556-26930575 Msa0880370:CDS 25.0%
!! ATTCCTAATACTTTAGTCTT+AGG - chr6_1:26930920-26930939 Msa0880370:intron 25.0%
!! TATCCTAAGACTAAAGTATT+AGG + chr6_1:26930926-26930945 None:intergenic 25.0%
! TTCTAACAGTAATTATTTGG+GGG - chr6_1:26931174-26931193 Msa0880370:intron 25.0%
! TTGTGTAAATTGTACTATCA+AGG + chr6_1:26931354-26931373 None:intergenic 25.0%
!! TTGATAGTACAATTTACACA+AGG - chr6_1:26931353-26931372 Msa0880370:intron 25.0%
! TAAAAGACCTAATTACACAA+CGG + chr6_1:26931427-26931446 None:intergenic 25.0%
!! TGTAATTAGGTCTTTTAACA+TGG - chr6_1:26931430-26931449 Msa0880370:intron 25.0%
!!! GTCTGATTTTTTTTCCAATT+TGG - chr6_1:26931649-26931668 Msa0880370:intron 25.0%
!!! TTGAACATTGTTTTATGCTT+AGG - chr6_1:26931780-26931799 Msa0880370:intron 25.0%
! TGTAAAATGTATTTGTCTAC+AGG + chr6_1:26932041-26932060 None:intergenic 25.0%
!! TATATTTGGATTTGGTAAAC+AGG - chr6_1:26932161-26932180 Msa0880370:intron 25.0%
!! ATATAAAAAGTGTACCTTGA+AGG + chr6_1:26932619-26932638 None:intergenic 25.0%
AAAGGTAAAGGTAAAGATAG+AGG + chr6_1:26929276-26929295 None:intergenic 30.0%
TCTTTACCTTTACCTTTACA+AGG - chr6_1:26929279-26929298 Msa0880370:three_prime_UTR 30.0%
CATTCTAGATGAAATTCATG+TGG + chr6_1:26929866-26929885 None:intergenic 30.0%
! TAGTCTCTTTTTGTTCTTTC+TGG + chr6_1:26930181-26930200 None:intergenic 30.0%
! TGAAAACTCCTTTTACTTGA+AGG - chr6_1:26930403-26930422 Msa0880370:intron 30.0%
TTATATATTTCGCAAAGGAG+AGG - chr6_1:26930610-26930629 Msa0880370:CDS 30.0%
TTCTGGATCGATAAATTGAA+GGG - chr6_1:26930656-26930675 Msa0880370:intron 30.0%
CAATTCATATTTGACCATAC+AGG - chr6_1:26930698-26930717 Msa0880370:intron 30.0%
! TTAGCATCCACATTTTGTAA+TGG + chr6_1:26930802-26930821 None:intergenic 30.0%
TCTAACAGTAATTATTTGGG+GGG - chr6_1:26931175-26931194 Msa0880370:intron 30.0%
GTAAATTGTACTATCAAGGA+AGG + chr6_1:26931350-26931369 None:intergenic 30.0%
AACATGTGAATAAATGTTGG+TGG + chr6_1:26931392-26931411 None:intergenic 30.0%
!!! CAGTTCATTGTTTTGACAAA+AGG - chr6_1:26931469-26931488 Msa0880370:CDS 30.0%
TCCTTACATCTTTGTATTCT+TGG + chr6_1:26931743-26931762 None:intergenic 30.0%
! GTCATTTGTTACACAACTTT+AGG - chr6_1:26931805-26931824 Msa0880370:intron 30.0%
! ATTTGTTACACAACTTTAGG+TGG - chr6_1:26931808-26931827 Msa0880370:intron 30.0%
! TCGAGTAAAATTGAAAGTGT+CGG + chr6_1:26931950-26931969 None:intergenic 30.0%
TATTTATTCCAAATGCTCAC+AGG - chr6_1:26932332-26932351 Msa0880370:intron 30.0%
! TTTTCTACATGAATTGTGAC+TGG - chr6_1:26932355-26932374 Msa0880370:intron 30.0%
TTTCTACATGAATTGTGACT+GGG - chr6_1:26932356-26932375 Msa0880370:intron 30.0%
AAAACTTTCCTATGGCAATT+GGG + chr6_1:26932493-26932512 None:intergenic 30.0%
AAAAACTTTCCTATGGCAAT+TGG + chr6_1:26932494-26932513 None:intergenic 30.0%
AAGCAACAAAAACTTTCCTA+TGG + chr6_1:26932501-26932520 None:intergenic 30.0%
CTGCTATCTGTTTATTGTTT+CGG - chr6_1:26932563-26932582 Msa0880370:intron 30.0%
TGCTATCTGTTTATTGTTTC+GGG - chr6_1:26932564-26932583 Msa0880370:intron 30.0%
ATGTCAAAATCAAACCTTCA+AGG - chr6_1:26932602-26932621 Msa0880370:CDS 30.0%
AATGCATTAGCGAGCTAAAA+AGG - chr6_1:26929157-26929176 Msa0880370:three_prime_UTR 35.0%
!! AAGGTAAAGATAGAGGTGTT+GGG + chr6_1:26929269-26929288 None:intergenic 35.0%
! AAAGGTAAAGATAGAGGTGT+TGG + chr6_1:26929270-26929289 None:intergenic 35.0%
AGGAAATTGAAGTAACTGTC+TGG + chr6_1:26929306-26929325 None:intergenic 35.0%
TCATCTGATTCTTCTTTGGT+TGG + chr6_1:26929416-26929435 None:intergenic 35.0%
ACTCTCATCTGATTCTTCTT+TGG + chr6_1:26929420-26929439 None:intergenic 35.0%
TTCGTGTAGAAGAAAAGTTG+TGG - chr6_1:26929596-26929615 Msa0880370:intron 35.0%
CATTTGTCTGCTAAAAGCAA+AGG - chr6_1:26929623-26929642 Msa0880370:exon 35.0%
TACACAACCCAGTATCAAAT+GGG - chr6_1:26929690-26929709 Msa0880370:CDS 35.0%
AATACCACCCATTTGATACT+GGG + chr6_1:26929700-26929719 None:intergenic 35.0%
TAATACCACCCATTTGATAC+TGG + chr6_1:26929701-26929720 None:intergenic 35.0%
ACACTCACACACATTGAATT+GGG - chr6_1:26929819-26929838 Msa0880370:intron 35.0%
TGTGTTCGACATGTTACATT+TGG + chr6_1:26929995-26930014 None:intergenic 35.0%
TACTCGGTTACTCTATCTAT+CGG + chr6_1:26930043-26930062 None:intergenic 35.0%
! TTTTTACTCATGTTCCCAAG+TGG + chr6_1:26930157-26930176 None:intergenic 35.0%
!! TTTCTGAAACCGCATGTAAA+CGG + chr6_1:26930360-26930379 None:intergenic 35.0%
TTACATGCGGTTTCAGAAAA+AGG - chr6_1:26930361-26930380 Msa0880370:intron 35.0%
CTTGAGAACCTTCAAGTAAA+AGG + chr6_1:26930414-26930433 None:intergenic 35.0%
! CTTTTACTTGAAGGTTCTCA+AGG - chr6_1:26930412-26930431 Msa0880370:intron 35.0%
TTTACATGTTGGTGCATACA+TGG + chr6_1:26930457-26930476 None:intergenic 35.0%
CTGATTTACATTTCCTCTTC+TGG - chr6_1:26930639-26930658 Msa0880370:CDS 35.0%
TCAATTTATCGATCCAGAAG+AGG + chr6_1:26930655-26930674 None:intergenic 35.0%
CTTCTGGATCGATAAATTGA+AGG - chr6_1:26930655-26930674 Msa0880370:intron 35.0%
TTTAACACTCACTCTCTCAT+TGG - chr6_1:26930739-26930758 Msa0880370:intron 35.0%
CTCATTGGATGAAATCAATG+TGG - chr6_1:26930754-26930773 Msa0880370:intron 35.0%
AAAATGAACATAGTTGCTCC+TGG - chr6_1:26930884-26930903 Msa0880370:intron 35.0%
AAATGAACATAGTTGCTCCT+GGG - chr6_1:26930885-26930904 Msa0880370:intron 35.0%
TTGACTAATAGCAGCTATAG+TGG + chr6_1:26931020-26931039 None:intergenic 35.0%
!! GTGATTTGTTCAAATTCCAC+TGG - chr6_1:26931073-26931092 Msa0880370:intron 35.0%
! GAAGCAGTGTTGTTAAATAG+CGG + chr6_1:26931125-26931144 None:intergenic 35.0%
! GGTGGATCAAATGAATTTTG+TGG - chr6_1:26931209-26931228 Msa0880370:intron 35.0%
! ATCAAATGAATTTTGTGGCC+AGG - chr6_1:26931214-26931233 Msa0880370:intron 35.0%
AAAGAATAAACTCCACTCCA+TGG + chr6_1:26931247-26931266 None:intergenic 35.0%
!! TCATTTAATGAGGGTACCTT+AGG - chr6_1:26931272-26931291 Msa0880370:CDS 35.0%
GGCAACATGTGAATAAATGT+TGG + chr6_1:26931395-26931414 None:intergenic 35.0%
!! GGTCTTTTAACATGGTTTGT+TGG - chr6_1:26931438-26931457 Msa0880370:intron 35.0%
GAATTTCCATGAAAGCTCTA+AGG - chr6_1:26931564-26931583 Msa0880370:CDS 35.0%
TATACTCCTTAGAGCTTTCA+TGG + chr6_1:26931573-26931592 None:intergenic 35.0%
ACATAACAGACCATGAGATT+GGG + chr6_1:26931631-26931650 None:intergenic 35.0%
GCCAAGAATACAAAGATGTA+AGG - chr6_1:26931739-26931758 Msa0880370:intron 35.0%
! TTGGATTTGGTAAACAGGTA+TGG - chr6_1:26932166-26932185 Msa0880370:CDS 35.0%
AATGAAGAGACAGTGATTTC+AGG + chr6_1:26932215-26932234 None:intergenic 35.0%
!! TCCTCTTCTTTTTAGGAACA+AGG - chr6_1:26932381-26932400 Msa0880370:intron 35.0%
TCCTTGTTCCTAAAAAGAAG+AGG + chr6_1:26932385-26932404 None:intergenic 35.0%
!! CTTCTTTTTAGGAACAAGGA+AGG - chr6_1:26932385-26932404 Msa0880370:intron 35.0%
! TTTCCACTCACAAGTTCTTT+TGG - chr6_1:26932424-26932443 Msa0880370:CDS 35.0%
TTCTTAAAGCTCAATGTGTC+TGG - chr6_1:26932538-26932557 Msa0880370:intron 35.0%
CGAAACAATAAACAGATAGC+AGG + chr6_1:26932565-26932584 None:intergenic 35.0%
TGAAAAGGTTACACTGTGTT+AGG + chr6_1:26932652-26932671 None:intergenic 35.0%
!! AGGTAAAGATAGAGGTGTTG+GGG + chr6_1:26929268-26929287 None:intergenic 40.0%
TCTGGACCTTGTAAAGGTAA+AGG + chr6_1:26929288-26929307 None:intergenic 40.0%
TAACTGTCTGGACCTTGTAA+AGG + chr6_1:26929294-26929313 None:intergenic 40.0%
CTCAATTCAATGCATGCATG+CGG + chr6_1:26929338-26929357 None:intergenic 40.0%
!!! TTTCTTTTTCAGCATGCCAG+TGG - chr6_1:26929376-26929395 Msa0880370:three_prime_UTR 40.0%
TTGTCTGCTAAAAGCAAAGG+AGG - chr6_1:26929626-26929645 Msa0880370:exon 40.0%
TGTCTGCTAAAAGCAAAGGA+GGG - chr6_1:26929627-26929646 Msa0880370:exon 40.0%
AAAGGAGGGATTATCTGAAG+AGG - chr6_1:26929641-26929660 Msa0880370:CDS 40.0%
GTACACAACCCAGTATCAAA+TGG - chr6_1:26929689-26929708 Msa0880370:CDS 40.0%
CACACTCACACACATTGAAT+TGG - chr6_1:26929818-26929837 Msa0880370:intron 40.0%
TTAAGAGATGCTAGACGCAT+AGG + chr6_1:26930223-26930242 None:intergenic 40.0%
TGTAAACGGCATGAGTATAG+TGG + chr6_1:26930346-26930365 None:intergenic 40.0%
! ATACTCATGCCGTTTACATG+CGG - chr6_1:26930348-26930367 Msa0880370:intron 40.0%
! GAGAATCGGTGTTTACATGT+TGG + chr6_1:26930468-26930487 None:intergenic 40.0%
AAAGGTCCATCTCAAAACGT+AGG + chr6_1:26930527-26930546 None:intergenic 40.0%
!! GTTTTGTTAGCACTCCTGTA+TGG + chr6_1:26930715-26930734 None:intergenic 40.0%
!! GTAATGGATCCCACATAAAG+TGG + chr6_1:26930786-26930805 None:intergenic 40.0%
GTGGGATCCATTACAAAATG+TGG - chr6_1:26930792-26930811 Msa0880370:intron 40.0%
CATAAAATCTGCTTTCCCCT+AGG + chr6_1:26930844-26930863 None:intergenic 40.0%
GGAATAAATACCTAGAACCC+AGG + chr6_1:26930905-26930924 None:intergenic 40.0%
!!! ACCACTTTTTCCACGATTAG+CGG + chr6_1:26930962-26930981 None:intergenic 40.0%
AACAGTAATTATTTGGGGGG+TGG - chr6_1:26931178-26931197 Msa0880370:intron 40.0%
ACAGTAATTATTTGGGGGGT+GGG - chr6_1:26931179-26931198 Msa0880370:intron 40.0%
ATTACACAACGGCTAACACA+AGG + chr6_1:26931416-26931435 None:intergenic 40.0%
GTGTTAGCCGTTGTGTAATT+AGG - chr6_1:26931417-26931436 Msa0880370:intron 40.0%
!! AGCTCTAAGGAGTATACTCA+TGG - chr6_1:26931577-26931596 Msa0880370:intron 40.0%
TGAGATTGGGATAACCTGAT+CGG + chr6_1:26931618-26931637 None:intergenic 40.0%
ATCAGGTTATCCCAATCTCA+TGG - chr6_1:26931618-26931637 Msa0880370:intron 40.0%
GACATAACAGACCATGAGAT+TGG + chr6_1:26931632-26931651 None:intergenic 40.0%
GCTGCGTATAAATATCTCGA+AGG + chr6_1:26931721-26931740 None:intergenic 40.0%
GTTACACAACTTTAGGTGGA+AGG - chr6_1:26931812-26931831 Msa0880370:intron 40.0%
!! GTGGAAGGTAGCTTGTTAAA+TGG - chr6_1:26931827-26931846 Msa0880370:intron 40.0%
! GTTTGGGGATCATTTTCTCT+TGG - chr6_1:26931898-26931917 Msa0880370:intron 40.0%
GACAGTGATTTCAGGACAAT+AGG + chr6_1:26932207-26932226 None:intergenic 40.0%
TCATTTCTCTGTTGATCCAG+TGG - chr6_1:26932230-26932249 Msa0880370:CDS 40.0%
CATTTCTCTGTTGATCCAGT+GGG - chr6_1:26932231-26932250 Msa0880370:CDS 40.0%
AACTTGCCATATGCTTCAAG+TGG - chr6_1:26932294-26932313 Msa0880370:intron 40.0%
GTAGAAAACCTGTGAGCATT+TGG + chr6_1:26932343-26932362 None:intergenic 40.0%
! CTGGGTTTCCTCTTCTTTTT+AGG - chr6_1:26932374-26932393 Msa0880370:intron 40.0%
TTGTGAGTGGAAATAGAAGC+AGG + chr6_1:26932417-26932436 None:intergenic 40.0%
TAGCCAAAAGAACTTGTGAG+TGG + chr6_1:26932430-26932449 None:intergenic 40.0%
GCAATTGGGTTTCAGAATGT+CGG + chr6_1:26932479-26932498 None:intergenic 40.0%
!! TTCTGAAACCCAATTGCCAT+AGG - chr6_1:26932482-26932501 Msa0880370:CDS 40.0%
CATGCATGCGGTAACTAATG+AGG + chr6_1:26929326-26929345 None:intergenic 45.0%
! TTTTCAGCATGCCAGTGGAA+TGG - chr6_1:26929381-26929400 Msa0880370:three_prime_UTR 45.0%
! TTTCCTCTGAGAAGCGAGAT+TGG + chr6_1:26929469-26929488 None:intergenic 45.0%
ATCTCGCTTCTCAGAGGAAA+AGG - chr6_1:26929469-26929488 Msa0880370:three_prime_UTR 45.0%
ACAACCCAGTATCAAATGGG+TGG - chr6_1:26929693-26929712 Msa0880370:CDS 45.0%
TACTCATGTTCCCAAGTGGT+TGG + chr6_1:26930153-26930172 None:intergenic 45.0%
!!! CAACCTCCTACGTTTTGAGA+TGG - chr6_1:26930518-26930537 Msa0880370:intron 45.0%
TGGATCCCACCACTTTATGT+GGG - chr6_1:26930774-26930793 Msa0880370:intron 45.0%
TGGATCCCACATAAAGTGGT+GGG + chr6_1:26930782-26930801 None:intergenic 45.0%
ATGGATCCCACATAAAGTGG+TGG + chr6_1:26930783-26930802 None:intergenic 45.0%
TGGATGCTAACATGCCTCTT+TGG - chr6_1:26930812-26930831 Msa0880370:intron 45.0%
ATCTGCTTTCCCCTAGGTTA+TGG + chr6_1:26930838-26930857 None:intergenic 45.0%
GTGTTATCAACCGCTAATCG+TGG - chr6_1:26930949-26930968 Msa0880370:intron 45.0%
ACCGCTAATCGTGGAAAAAG+TGG - chr6_1:26930958-26930977 Msa0880370:intron 45.0%
CCTATAATGCGACATTCCAG+TGG + chr6_1:26931092-26931111 None:intergenic 45.0%
CCACTGGAATGTCGCATTAT+AGG - chr6_1:26931089-26931108 Msa0880370:intron 45.0%
CAGTAATTATTTGGGGGGTG+GGG - chr6_1:26931180-26931199 Msa0880370:intron 45.0%
AGTAATTATTTGGGGGGTGG+GGG - chr6_1:26931181-26931200 Msa0880370:intron 45.0%
ATCTCTGGCAACAGTGATGT+TGG - chr6_1:26931319-26931338 Msa0880370:CDS 45.0%
GTAGTGATACGATTCCGATC+AGG - chr6_1:26931601-26931620 Msa0880370:intron 45.0%
ATTGGTTAGCGCGACCAAAT+TGG + chr6_1:26931666-26931685 None:intergenic 45.0%
GTGATTTCAGGACAATAGGC+TGG + chr6_1:26932203-26932222 None:intergenic 45.0%
TACATAAGCTCAGTTCCCAC+TGG + chr6_1:26932249-26932268 None:intergenic 45.0%
GGAACTGAGCTTATGTAGTG+AGG - chr6_1:26932252-26932271 Msa0880370:CDS 45.0%
! TGTCTGCCACTTGAAGCATA+TGG + chr6_1:26932303-26932322 None:intergenic 45.0%
!! AAAATAAAATTATATTGAAA+AGG + chr6_1:26932667-26932686 None:intergenic 5.0%
!!! TTTTCAATATAATTTTATTT+TGG - chr6_1:26932666-26932685 Msa0880370:CDS 5.0%
GTGTTGGGGTGAATTGACGA+GGG + chr6_1:26929254-26929273 None:intergenic 50.0%
GGCTCTTGAATCCATTCCAC+TGG + chr6_1:26929395-26929414 None:intergenic 50.0%
GAGAAGCGAGATTGGAGCTT+TGG + chr6_1:26929461-26929480 None:intergenic 50.0%
ACTCACACGTACCAACCACT+TGG - chr6_1:26930139-26930158 Msa0880370:intron 50.0%
CTCACACGTACCAACCACTT+GGG - chr6_1:26930140-26930159 Msa0880370:intron 50.0%
ATGACCTTGTTGCTCCTGCA+GGG - chr6_1:26930297-26930316 Msa0880370:CDS 50.0%
ACGGCATGAGTATAGTGGTC+AGG + chr6_1:26930341-26930360 None:intergenic 50.0%
GGTCCATCTCAAAACGTAGG+AGG + chr6_1:26930524-26930543 None:intergenic 50.0%
GTGGATCCCACCACTTTATG+TGG - chr6_1:26930773-26930792 Msa0880370:intron 50.0%
TGCCTCTTTGGCCATAACCT+AGG - chr6_1:26930824-26930843 Msa0880370:intron 50.0%
GCCTCTTTGGCCATAACCTA+GGG - chr6_1:26930825-26930844 Msa0880370:intron 50.0%
CCTCTTTGGCCATAACCTAG+GGG - chr6_1:26930826-26930845 Msa0880370:intron 50.0%
CATAGTTGCTCCTGGGTTCT+AGG - chr6_1:26930892-26930911 Msa0880370:intron 50.0%
AGCAGCTATAGTGGCGCTAT+AGG + chr6_1:26931011-26931030 None:intergenic 50.0%
!! TGAGGGTACCTTAGGTAACC+AGG - chr6_1:26931280-26931299 Msa0880370:CDS 50.0%
ATGTTCCGCCTGGTTACCTA+AGG + chr6_1:26931291-26931310 None:intergenic 50.0%
TTTGGTCGCGCTAACCAATC+TGG - chr6_1:26931667-26931686 Msa0880370:intron 50.0%
GATGACGTCATGCACCAGAT+TGG + chr6_1:26931684-26931703 None:intergenic 50.0%
GACGTCATCTTCTGCAGTTG+AGG - chr6_1:26931695-26931714 Msa0880370:intron 50.0%
! GGTGTTGGGGTGAATTGACG+AGG + chr6_1:26929255-26929274 None:intergenic 55.0%
GCTCCAATCTCGCTTCTCAG+AGG - chr6_1:26929463-26929482 Msa0880370:three_prime_UTR 55.0%
GATGACCTTGTTGCTCCTGC+AGG - chr6_1:26930296-26930315 Msa0880370:CDS 55.0%
CCCCTAGGTTATGGCCAAAG+AGG + chr6_1:26930829-26930848 None:intergenic 55.0%
GGGTACCTTAGGTAACCAGG+CGG - chr6_1:26931283-26931302 Msa0880370:CDS 55.0%
TAACCAGGCGGAACATGCAC+TGG - chr6_1:26931295-26931314 Msa0880370:CDS 55.0%
! GGAACATGCACTGGCATCTC+TGG - chr6_1:26931304-26931323 Msa0880370:CDS 55.0%
TGAGCAGAAACACGCCCTGC+AGG + chr6_1:26930314-26930333 None:intergenic 60.0%
TTATTTGGGGGGTGGGGGTC+TGG - chr6_1:26931186-26931205 Msa0880370:intron 60.0%
TATTTGGGGGGTGGGGGTCT+GGG - chr6_1:26931187-26931206 Msa0880370:intron 60.0%
TGTGGCCAGGAGTTCAGCCA+TGG - chr6_1:26931227-26931246 Msa0880370:intron 60.0%
CCACTCCATGGCTGAACTCC+TGG + chr6_1:26931235-26931254 None:intergenic 60.0%
CCAGGAGTTCAGCCATGGAG+TGG - chr6_1:26931232-26931251 Msa0880370:intron 60.0%
ATGCCAGTGCATGTTCCGCC+TGG + chr6_1:26931301-26931320 None:intergenic 60.0%
CACGCCCTGCAGGAGCAACA+AGG + chr6_1:26930304-26930323 None:intergenic 65.0%
ATTTGGGGGGTGGGGGTCTG+GGG - chr6_1:26931188-26931207 Msa0880370:intron 65.0%
! TGGGGGGTGGGGGTCTGGGG+TGG - chr6_1:26931191-26931210 Msa0880370:intron 80.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 26929155 26932746 26929155 ID=Msa0880370;Name=Msa0880370
chr6_1 mRNA 26929155 26932746 26929155 ID=Msa0880370-mRNA-1;Parent=Msa0880370;Name=Msa0880370-mRNA-1;_AED=0.25;_eAED=0.25;_QI=52|1|1|1|0.77|0.7|10|407|291
chr6_1 exon 26929155 26929547 26929155 ID=Msa0880370-mRNA-1:exon:6595;Parent=Msa0880370-mRNA-1
chr6_1 exon 26929618 26929718 26929618 ID=Msa0880370-mRNA-1:exon:6594;Parent=Msa0880370-mRNA-1
chr6_1 exon 26930146 26930189 26930146 ID=Msa0880370-mRNA-1:exon:6593;Parent=Msa0880370-mRNA-1
chr6_1 exon 26930279 26930341 26930279 ID=Msa0880370-mRNA-1:exon:6592;Parent=Msa0880370-mRNA-1
chr6_1 exon 26930527 26930665 26930527 ID=Msa0880370-mRNA-1:exon:6591;Parent=Msa0880370-mRNA-1
chr6_1 exon 26931270 26931338 26931270 ID=Msa0880370-mRNA-1:exon:6590;Parent=Msa0880370-mRNA-1
chr6_1 exon 26931444 26931583 26931444 ID=Msa0880370-mRNA-1:exon:6589;Parent=Msa0880370-mRNA-1
chr6_1 exon 26932166 26932296 26932166 ID=Msa0880370-mRNA-1:exon:6588;Parent=Msa0880370-mRNA-1
chr6_1 exon 26932411 26932513 26932411 ID=Msa0880370-mRNA-1:exon:6587;Parent=Msa0880370-mRNA-1
chr6_1 exon 26932595 26932746 26932595 ID=Msa0880370-mRNA-1:exon:6586;Parent=Msa0880370-mRNA-1
chr6_1 five_prime_UTR 26932695 26932746 26932695 ID=Msa0880370-mRNA-1:five_prime_utr;Parent=Msa0880370-mRNA-1
chr6_1 CDS 26932595 26932694 26932595 ID=Msa0880370-mRNA-1:cds;Parent=Msa0880370-mRNA-1
chr6_1 CDS 26932411 26932513 26932411 ID=Msa0880370-mRNA-1:cds;Parent=Msa0880370-mRNA-1
chr6_1 CDS 26932166 26932296 26932166 ID=Msa0880370-mRNA-1:cds;Parent=Msa0880370-mRNA-1
chr6_1 CDS 26931444 26931583 26931444 ID=Msa0880370-mRNA-1:cds;Parent=Msa0880370-mRNA-1
chr6_1 CDS 26931270 26931338 26931270 ID=Msa0880370-mRNA-1:cds;Parent=Msa0880370-mRNA-1
chr6_1 CDS 26930527 26930665 26930527 ID=Msa0880370-mRNA-1:cds;Parent=Msa0880370-mRNA-1
chr6_1 CDS 26930279 26930341 26930279 ID=Msa0880370-mRNA-1:cds;Parent=Msa0880370-mRNA-1
chr6_1 CDS 26930146 26930189 26930146 ID=Msa0880370-mRNA-1:cds;Parent=Msa0880370-mRNA-1
chr6_1 CDS 26929632 26929718 26929632 ID=Msa0880370-mRNA-1:cds;Parent=Msa0880370-mRNA-1
chr6_1 three_prime_UTR 26929618 26929631 26929618 ID=Msa0880370-mRNA-1:three_prime_utr;Parent=Msa0880370-mRNA-1
chr6_1 three_prime_UTR 26929155 26929547 26929155 ID=Msa0880370-mRNA-1:three_prime_utr;Parent=Msa0880370-mRNA-1
Gene Sequence

>Msa0880370

ATGAGTTTTGCAATGCAATGCTCAAACTATTCTTCTTTTTGTGTCCCTCGTCAATTCACCCCAACACCTCTATCTTTACCTTTACCTTTACAAGGTCCAGCATGCCAGTGGAATGGATTCAAGAGCCAACCAAAGAAGAATCAGATGAGAGTATTTTGTAGTTCAGACGACCAAAGCTCCAATCTCGCTTCTCAGAGGAAAAGAAGAAAAGTTGTGGAGCACATTTGTCTGCTAAAAGCAAAGGAGGGATTATCTGAAGAGGAAGAGAATGACATGCATGATTATTTGTACACAACCCAGTATCAAATGGGTGGTATTATTGCTATTTCATTAGGGCGTGTTTCTGCTCAGAATCCTGACCACTATACTCATGCCGTTTACATGCGGTTTCAGAAAAAGGAAAACCTTGAAAAGTTCTATGAAAACTCCTTTTACTTGAAGGTTCTCAAGGATCACGTAATGACTTACTGCCATGGATTAATTAATGTGGACTACGAATCTGAAGTCGATGATGACATGATTTATATATTTCGCAAAGGAGAGGAGTTCAGCCATGGAGTGGAGTTTATTCTTTTGATATCATTTAATGAGGGTACCTTAGGTAACCAGGCGGAACATGCACTGGCATCTCTGGCAACAGTGATGTTGGAATCTCCTTCCTTGATAGTACAATTTACACAAGGTTTGAATTTCCATGAAAGCTCTAAGGAGTATACTCATGGAGTAGTGATACGATTCCGATCAGTTGAGGCCTTCGAGATATTTATACGCAGCCAAGAATACAAAGATGTATGGATATCTAAGTTCCAGCCTATTGTCCTGAAATCACTGTCTCTTCATTTCTCTGTTGATCCAGTGGGAACTGAGCTTATGTAG

Protein sequence

>Msa0880370

MSFAMQCSNYSSFCVPRQFTPTPLSLPLPLQGPACQWNGFKSQPKKNQMRVFCSSDDQSSNLASQRKRRKVVEHICLLKAKEGLSEEEENDMHDYLYTTQYQMGGIIAISLGRVSAQNPDHYTHAVYMRFQKKENLEKFYENSFYLKVLKDHVMTYCHGLINVDYESEVDDDMIYIFRKGEEFSHGVEFILLISFNEGTLGNQAEHALASLATVMLESPSLIVQFTQGLNFHESSKEYTHGVVIRFRSVEAFEIFIRSQEYKDVWISKFQPIVLKSLSLHFSVDPVGTELM*