AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0367310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0367310 MtrunA17_Chr3g0108631 94.643 224 12 0 1 224 1 224 1.55e-162 447
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0367310 AT5G58260.1 78.652 178 31 2 49 222 35 209 1.35e-101 293
Msa0367310 AT5G58260.2 78.030 132 22 2 49 176 35 163 1.21e-71 216

Find 87 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAACATTGGTTAGAAAT+TGG 0.199134 3_1:-62996781 None:intergenic
TTGTAGTCTCTTTGTTTCTT+TGG 0.209156 3_1:-62996874 None:intergenic
CATGAATCTCAGGCTCATTT+AGG 0.248243 3_1:+62998022 Msa0367310:intron
GTAACAGTGATAGAAGTAAA+AGG 0.281626 3_1:+62997032 Msa0367310:CDS
ATTCATCCTTATATATCTTT+TGG 0.282822 3_1:-62999179 None:intergenic
TTGGTTAGAAATTGGAAATT+AGG 0.298624 3_1:-62996773 None:intergenic
TGACTTCATTGGAGGAGATT+TGG 0.322097 3_1:+62997087 Msa0367310:CDS
GATTTGGTTAAATTTGATAT+TGG 0.335397 3_1:+62997103 Msa0367310:CDS
ACTGGTTTGAATGAACTAAA+AGG 0.339247 3_1:+62999380 Msa0367310:three_prime_UTR
TAACCTTCAATTTGAGATAG+TGG 0.349310 3_1:-62996669 None:intergenic
GACCTTACAGCTCGTGGTCT+TGG 0.380827 3_1:+62997241 Msa0367310:CDS
AGTACACCAAAAGATATATA+AGG 0.383201 3_1:+62999173 Msa0367310:three_prime_UTR
ACCACCAGTCCTTTAGCATT+TGG 0.385270 3_1:-62998109 None:intergenic
GGGAAATACCACCTTGCTAT+TGG 0.388797 3_1:-62998052 None:intergenic
GCTATGAAGCTGTTCCTTGT+TGG 0.392835 3_1:-62996956 None:intergenic
ACTTTGGTGAGAGTAGTTTC+AGG 0.404266 3_1:-62997268 None:intergenic
ATGGGATTAGGTGACTTCAT+TGG 0.442642 3_1:+62997076 Msa0367310:CDS
AAGCCACTCAACGAAATTGC+TGG 0.444434 3_1:+62999021 Msa0367310:CDS
ATGTTAGCCTCTGCAAGCTT+AGG 0.446007 3_1:+62996899 Msa0367310:CDS
GATGAATGATATTAGTTGTA+TGG 0.451236 3_1:-62996745 None:intergenic
TCATTGCTGAATGTGGAAAT+TGG 0.454528 3_1:+62998744 Msa0367310:CDS
TCAGCAATGACCCTCACATT+AGG 0.462929 3_1:-62998731 None:intergenic
TGCAGCAGTGGAATGGGATT+AGG 0.468261 3_1:+62997064 Msa0367310:CDS
TGCTGGACTGACCACTAGTC+AGG 0.471357 3_1:+62999038 Msa0367310:CDS
TCCAATCTGTAATCAACCTC+TGG 0.475049 3_1:-62998076 None:intergenic
GCCTCTGCAAGCTTAGGTTG+TGG 0.477414 3_1:+62996905 Msa0367310:CDS
GTGAAATGCAGCAGTGGAAT+GGG 0.480259 3_1:+62997058 Msa0367310:CDS
GTTGAAAGATAAAGAAACAT+TGG 0.490021 3_1:-62996792 None:intergenic
ATGCCACTATCTCAAATTGA+AGG 0.492066 3_1:+62996666 Msa0367310:five_prime_UTR
AAGATGAAAATATTCCTACT+TGG 0.493351 3_1:-62999106 None:intergenic
CAACACTGGAAGAACGATGA+TGG 0.495851 3_1:+62996991 Msa0367310:CDS
ACCAGAGGTTGATTACAGAT+TGG 0.496749 3_1:+62998075 Msa0367310:CDS
TAACAGTGATAGAAGTAAAA+GGG 0.496959 3_1:+62997033 Msa0367310:CDS
ACCAGTCCTTTAGCATTTGG+TGG 0.500265 3_1:-62998106 None:intergenic
CACCAAGACCACGAGCTGTA+AGG 0.525141 3_1:-62997243 None:intergenic
AGTGAAATGCAGCAGTGGAA+TGG 0.525909 3_1:+62997057 Msa0367310:CDS
TGTTCCTTAGGTTCTCTCCA+AGG 0.526918 3_1:+62998670 Msa0367310:intron
AAGGAATTGTAGTTCAGCCT+TGG 0.529522 3_1:-62998687 None:intergenic
TTGCTCTGCTGCCAACACTA+AGG 0.531993 3_1:+62998708 Msa0367310:CDS
CCTCATGAAGGAGGGTATGA+AGG 0.537717 3_1:+62997175 Msa0367310:CDS
AGTCCAGCAATTTCGTTGAG+TGG 0.542281 3_1:-62999024 None:intergenic
TATCTGCAAGTGCCTTGAGT+TGG 0.544799 3_1:-62999146 None:intergenic
TTTCTTGACCTTACAGCTCG+TGG 0.545690 3_1:+62997235 Msa0367310:CDS
CTGGAAGAACGATGATGGGT+TGG 0.554424 3_1:+62996996 Msa0367310:CDS
GTACATATCACTCATGGTTG+TGG 0.558222 3_1:-62999229 None:intergenic
AGGGCAAACAGGATGAACTT+TGG 0.558412 3_1:-62997284 None:intergenic
GAGAAATGAGATAAAGTGAT+CGG 0.565737 3_1:-62996720 None:intergenic
GAGTGATATGTACATTCTCA+AGG 0.567704 3_1:+62999239 Msa0367310:three_prime_UTR
GCATTACCACCAAATGCTAA+AGG 0.568190 3_1:+62998100 Msa0367310:CDS
GGATTAGGTGACTTCATTGG+AGG 0.569123 3_1:+62997079 Msa0367310:CDS
AATCTGTAATCAACCTCTGG+TGG 0.569201 3_1:-62998073 None:intergenic
GCTGAAAATCATAACAACAC+TGG 0.571770 3_1:+62996977 Msa0367310:CDS
GTTAGAAATTGGAAATTAGG+CGG 0.573232 3_1:-62996770 None:intergenic
AAGCTTGAACTTCCAACTCA+AGG 0.573552 3_1:+62999134 Msa0367310:three_prime_UTR
ACCACCAAATGCTAAAGGAC+TGG 0.573788 3_1:+62998105 Msa0367310:CDS
AGAACGATGATGGGTTGGAA+AGG 0.574451 3_1:+62997001 Msa0367310:CDS
ATATATACTCCTCATGAAGG+AGG 0.584569 3_1:+62997166 Msa0367310:CDS
AGAAATTGGAAATTAGGCGG+AGG 0.586679 3_1:-62996767 None:intergenic
TTATCGCGTCTTCAACGTCA+AGG 0.593630 3_1:+62997205 Msa0367310:CDS
GAGAATGTACATATCACTCA+TGG 0.594264 3_1:-62999235 None:intergenic
TTAAATTTGATATTGGACGT+TGG 0.596364 3_1:+62997110 Msa0367310:CDS
AACACTAAGGCCTAATGTGA+GGG 0.598775 3_1:+62998721 Msa0367310:CDS
GCAATATATACTCCTCATGA+AGG 0.600567 3_1:+62997163 Msa0367310:CDS
GTGAGGGTCATTGCTGAATG+TGG 0.601568 3_1:+62998737 Msa0367310:CDS
AACACTGGAAGAACGATGAT+GGG 0.605472 3_1:+62996992 Msa0367310:CDS
CTCACATTAGGCCTTAGTGT+TGG 0.607755 3_1:-62998719 None:intergenic
TGCTGAATGTTAGAGCATGT+TGG 0.609400 3_1:-62996932 None:intergenic
CTATCAAGCGTCCTGACTAG+TGG 0.611389 3_1:-62999049 None:intergenic
TTAGTGTTGGCAGCAGAGCA+AGG 0.611894 3_1:-62998706 None:intergenic
CAACACTAAGGCCTAATGTG+AGG 0.616666 3_1:+62998720 Msa0367310:CDS
GAATGATATTAGTTGTATGG+TGG 0.617217 3_1:-62996742 None:intergenic
ATGCTAAAGGACTGGTGGTG+TGG 0.617377 3_1:+62998113 Msa0367310:CDS
ATCTGTAATCAACCTCTGGT+GGG 0.628296 3_1:-62998072 None:intergenic
TCTGCAAGCTTAGGTTGTGG+AGG 0.630890 3_1:+62996908 Msa0367310:CDS
AAAGTGATCGGTGAGAGAGA+AGG 0.633846 3_1:-62996708 None:intergenic
CCTTCATACCCTCCTTCATG+AGG 0.634611 3_1:-62997175 None:intergenic
TAGGAAAGCAACCAATAGCA+AGG 0.634862 3_1:+62998041 Msa0367310:CDS
TATATACTCCTCATGAAGGA+GGG 0.636161 3_1:+62997167 Msa0367310:CDS
GGTGTGGATCATTGAAGCCA+AGG 0.636653 3_1:+62998129 Msa0367310:CDS
AGGGCAGTGAAATGCAGCAG+TGG 0.648171 3_1:+62997052 Msa0367310:CDS
CTAACATTCAGCAACCAACA+AGG 0.653000 3_1:+62996942 Msa0367310:CDS
TCCACAACCTAAGCTTGCAG+AGG 0.654833 3_1:-62996906 None:intergenic
AAGGTGGTATTTCCCACCAG+AGG 0.661184 3_1:+62998060 Msa0367310:CDS
ACCAAATGCTAAAGGACTGG+TGG 0.663339 3_1:+62998108 Msa0367310:CDS
TGATCAGGAGAAAGTTTACG+TGG 0.681866 3_1:+62998998 Msa0367310:intron
GAAAGCAACCAATAGCAAGG+TGG 0.723318 3_1:+62998044 Msa0367310:CDS
GATAGTGGCATATCATCATG+TGG 0.747122 3_1:-62996654 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTACATTCTATAATTTTTTT+TGG + chr3_1:62997471-62997490 Msa0367310:intron 10.0%
!!! TACATTCTATAATTTTTTTT+GGG + chr3_1:62997472-62997491 Msa0367310:intron 10.0%
!!! TTTGTTTTTATGAAAATAAA+AGG + chr3_1:62998358-62998377 Msa0367310:intron 10.0%
!!! TTGTTTTTATGAAAATAAAA+GGG + chr3_1:62998359-62998378 Msa0367310:intron 10.0%
!! AAAAACATTATTAGAAAATT+TGG - chr3_1:62998777-62998796 None:intergenic 10.0%
!!! CTCTTTTCTTATTAATTTTA+TGG + chr3_1:62997637-62997656 Msa0367310:intron 15.0%
!!! TATTAATTTTATGGACATTT+AGG + chr3_1:62997646-62997665 Msa0367310:intron 15.0%
!!! CTTTACTTTTATTACATTAA+AGG + chr3_1:62998163-62998182 Msa0367310:intron 15.0%
!! ATTATTTGTATTATATCTCT+AGG + chr3_1:62998295-62998314 Msa0367310:intron 15.0%
!! TGAATATACATTAATTTATC+TGG + chr3_1:62998615-62998634 Msa0367310:intron 15.0%
!!! GATTTGGTTAAATTTGATAT+TGG + chr3_1:62997103-62997122 Msa0367310:CDS 20.0%
!!! ATTCAGTTTAAAAGCATTTA+TGG + chr3_1:62997400-62997419 Msa0367310:intron 20.0%
!!! CTCCTTTAAAATTTCTTTTT+CGG + chr3_1:62997718-62997737 Msa0367310:intron 20.0%
!! AAACAATTTCATCAGAAAAT+AGG - chr3_1:62998337-62998356 None:intergenic 20.0%
!!! TTTTTATGAAAATAAAAGGG+AGG + chr3_1:62998362-62998381 Msa0367310:intron 20.0%
!! TCATGGAAAGTTATAAATAA+AGG + chr3_1:62998440-62998459 Msa0367310:intron 20.0%
!!! ATTCATCCTTATATATCTTT+TGG - chr3_1:62999182-62999201 None:intergenic 20.0%
! GATGAATGATATTAGTTGTA+TGG - chr3_1:62996748-62996767 None:intergenic 25.0%
! TTGGTTAGAAATTGGAAATT+AGG - chr3_1:62996776-62996795 None:intergenic 25.0%
!! AAGAAACATTGGTTAGAAAT+TGG - chr3_1:62996784-62996803 None:intergenic 25.0%
! GTTGAAAGATAAAGAAACAT+TGG - chr3_1:62996795-62996814 None:intergenic 25.0%
! TAACAGTGATAGAAGTAAAA+GGG + chr3_1:62997033-62997052 Msa0367310:CDS 25.0%
! TTAAATTTGATATTGGACGT+TGG + chr3_1:62997110-62997129 Msa0367310:CDS 25.0%
! AAAGAGGAAAAAAACTTACA+GGG - chr3_1:62997306-62997325 None:intergenic 25.0%
!!! AAGCTTTGAAAATTCTGTTT+AGG + chr3_1:62997334-62997353 Msa0367310:intron 25.0%
! GTAATAATAGCTATGAATCA+TGG - chr3_1:62997364-62997383 None:intergenic 25.0%
!!! TTGAGAATGCAATTTGTTTT+TGG + chr3_1:62997524-62997543 Msa0367310:intron 25.0%
! AATTGTGCAAACAACTATTT+AGG + chr3_1:62997556-62997575 Msa0367310:intron 25.0%
! ATTTAAGGACTATAATGACA+AGG - chr3_1:62997587-62997606 None:intergenic 25.0%
!! AAAGGAGCAAATAACTATTT+TGG - chr3_1:62997705-62997724 None:intergenic 25.0%
!! AGCCGAAAAAGAAATTTTAA+AGG - chr3_1:62997723-62997742 None:intergenic 25.0%
! GTAATGATAGTTATCAATCA+TGG - chr3_1:62997748-62997767 None:intergenic 25.0%
!!! AAGCTTTTAATTTGAAGTGT+TGG - chr3_1:62997785-62997804 None:intergenic 25.0%
!!! ATTCTGTTTTAAGTATGTGA+GGG - chr3_1:62998191-62998210 None:intergenic 25.0%
!!! AAATGCTTTTAGGAAAAGTA+TGG + chr3_1:62998269-62998288 Msa0367310:intron 25.0%
! AATTTCATCAGAAAATAGGT+GGG - chr3_1:62998333-62998352 None:intergenic 25.0%
! GAGATTCTAATATCATATCA+TGG + chr3_1:62998423-62998442 Msa0367310:intron 25.0%
! ATTGCAACAAATTACAAATG+AGG - chr3_1:62998495-62998514 None:intergenic 25.0%
! AATTTCCAACTTTATATGCA+AGG + chr3_1:62998901-62998920 Msa0367310:intron 25.0%
! AAGATGAAAATATTCCTACT+TGG - chr3_1:62999109-62999128 None:intergenic 25.0%
! AGTACACCAAAAGATATATA+AGG + chr3_1:62999173-62999192 Msa0367310:three_prime_UTR 25.0%
! CTAGATGAGAAAAAAAAAAC+TGG + chr3_1:62999362-62999381 Msa0367310:three_prime_UTR 25.0%
! TAACCTTCAATTTGAGATAG+TGG - chr3_1:62996672-62996691 None:intergenic 30.0%
GAGAAATGAGATAAAGTGAT+CGG - chr3_1:62996723-62996742 None:intergenic 30.0%
GAATGATATTAGTTGTATGG+TGG - chr3_1:62996745-62996764 None:intergenic 30.0%
GTTAGAAATTGGAAATTAGG+CGG - chr3_1:62996773-62996792 None:intergenic 30.0%
! TTGTAGTCTCTTTGTTTCTT+TGG - chr3_1:62996877-62996896 None:intergenic 30.0%
GTAACAGTGATAGAAGTAAA+AGG + chr3_1:62997032-62997051 Msa0367310:CDS 30.0%
GAAAGAGGAAAAAAACTTAC+AGG - chr3_1:62997307-62997326 None:intergenic 30.0%
CAAAGCTTGAAAAAAGAAAG+AGG - chr3_1:62997322-62997341 None:intergenic 30.0%
! AGAATTTTGTCATGAATCTC+AGG + chr3_1:62998012-62998031 Msa0367310:intron 30.0%
!! TTCTGTTTTAAGTATGTGAG+GGG - chr3_1:62998190-62998209 None:intergenic 30.0%
!! CATTCTGTTTTAAGTATGTG+AGG - chr3_1:62998192-62998211 None:intergenic 30.0%
!! CTAAAAGCATTTGATTGAGA+TGG - chr3_1:62998261-62998280 None:intergenic 30.0%
! CATCTCAATCAAATGCTTTT+AGG + chr3_1:62998259-62998278 Msa0367310:intron 30.0%
CAATTTCATCAGAAAATAGG+TGG - chr3_1:62998334-62998353 None:intergenic 30.0%
TATATTCACCTAACAACGAT+CGG - chr3_1:62998603-62998622 None:intergenic 30.0%
TTTATATGCAAGGTCTAGTT+TGG + chr3_1:62998911-62998930 Msa0367310:intron 30.0%
AACATGAGAATGAGATTTCT+TGG - chr3_1:62998966-62998985 None:intergenic 30.0%
GTTTGTTTATGTGAATGATC+AGG + chr3_1:62998983-62999002 Msa0367310:intron 30.0%
!! TATTCCTACTTGGTTTTTGA+TGG - chr3_1:62999099-62999118 None:intergenic 30.0%
!! CTCAAGGTTTAATTTTGTCA+TGG + chr3_1:62999255-62999274 Msa0367310:three_prime_UTR 30.0%
!! ACTGGTTTGAATGAACTAAA+AGG + chr3_1:62999380-62999399 Msa0367310:three_prime_UTR 30.0%
ATGCCACTATCTCAAATTGA+AGG + chr3_1:62996666-62996685 Msa0367310:five_prime_UTR 35.0%
GCTGAAAATCATAACAACAC+TGG + chr3_1:62996977-62996996 Msa0367310:CDS 35.0%
GCAATATATACTCCTCATGA+AGG + chr3_1:62997163-62997182 Msa0367310:CDS 35.0%
ATATATACTCCTCATGAAGG+AGG + chr3_1:62997166-62997185 Msa0367310:CDS 35.0%
TATATACTCCTCATGAAGGA+GGG + chr3_1:62997167-62997186 Msa0367310:CDS 35.0%
AAAAAACTTACAGGGCAAAC+AGG - chr3_1:62997298-62997317 None:intergenic 35.0%
!! AAAAGCATTTATGGTGTTCG+AGG + chr3_1:62997409-62997428 Msa0367310:intron 35.0%
AAAATAAAAGGGAGGTGACA+AGG + chr3_1:62998370-62998389 Msa0367310:intron 35.0%
AATTTATCTGGTCAAATGCG+CGG + chr3_1:62998627-62998646 Msa0367310:intron 35.0%
TCATTGCTGAATGTGGAAAT+TGG + chr3_1:62998744-62998763 Msa0367310:CDS 35.0%
CTAGACCTTGCATATAAAGT+TGG - chr3_1:62998909-62998928 None:intergenic 35.0%
ATGAGAATGAGATTTCTTGG+TGG - chr3_1:62998963-62998982 None:intergenic 35.0%
GAGAATGTACATATCACTCA+TGG - chr3_1:62999238-62999257 None:intergenic 35.0%
GAGTGATATGTACATTCTCA+AGG + chr3_1:62999239-62999258 Msa0367310:three_prime_UTR 35.0%
! GATAGTGGCATATCATCATG+TGG - chr3_1:62996657-62996676 None:intergenic 40.0%
AGAAATTGGAAATTAGGCGG+AGG - chr3_1:62996770-62996789 None:intergenic 40.0%
TGCTGAATGTTAGAGCATGT+TGG - chr3_1:62996935-62996954 None:intergenic 40.0%
CTAACATTCAGCAACCAACA+AGG + chr3_1:62996942-62996961 Msa0367310:CDS 40.0%
AACACTGGAAGAACGATGAT+GGG + chr3_1:62996992-62997011 Msa0367310:CDS 40.0%
ATGGGATTAGGTGACTTCAT+TGG + chr3_1:62997076-62997095 Msa0367310:CDS 40.0%
TGACTTCATTGGAGGAGATT+TGG + chr3_1:62997087-62997106 Msa0367310:CDS 40.0%
ACTTTGGTGAGAGTAGTTTC+AGG - chr3_1:62997271-62997290 None:intergenic 40.0%
!!! TTTTGGTTCTTGAATGTGCG+AGG - chr3_1:62997688-62997707 None:intergenic 40.0%
!! AGTGTTGGTGCATACTACAT+TGG - chr3_1:62997770-62997789 None:intergenic 40.0%
CAACAGTACAACGATACATG+CGG + chr3_1:62997838-62997857 Msa0367310:intron 40.0%
CATGAATCTCAGGCTCATTT+AGG + chr3_1:62998022-62998041 Msa0367310:intron 40.0%
TAGGAAAGCAACCAATAGCA+AGG + chr3_1:62998041-62998060 Msa0367310:CDS 40.0%
ATCTGTAATCAACCTCTGGT+GGG - chr3_1:62998075-62998094 None:intergenic 40.0%
AATCTGTAATCAACCTCTGG+TGG - chr3_1:62998076-62998095 None:intergenic 40.0%
! ACCAGAGGTTGATTACAGAT+TGG + chr3_1:62998075-62998094 Msa0367310:CDS 40.0%
TCCAATCTGTAATCAACCTC+TGG - chr3_1:62998079-62998098 None:intergenic 40.0%
GCATTACCACCAAATGCTAA+AGG + chr3_1:62998100-62998119 Msa0367310:CDS 40.0%
GTAAAGCATAATCCACACCT+TGG - chr3_1:62998149-62998168 None:intergenic 40.0%
TTGCAGTTAAGCTGTGATAC+TGG - chr3_1:62998530-62998549 None:intergenic 40.0%
CTAACAACGATCGGATTTCT+TGG - chr3_1:62998594-62998613 None:intergenic 40.0%
CAAGAAATCCGATCGTTGTT+AGG + chr3_1:62998592-62998611 Msa0367310:intron 40.0%
! GCGGTACTAAAATGTTGCTT+TGG + chr3_1:62998646-62998665 Msa0367310:intron 40.0%
AAGGAATTGTAGTTCAGCCT+TGG - chr3_1:62998690-62998709 None:intergenic 40.0%
AACACTAAGGCCTAATGTGA+GGG + chr3_1:62998721-62998740 Msa0367310:CDS 40.0%
TGCTGAATGTGGAAATTGGT+AGG + chr3_1:62998748-62998767 Msa0367310:intron 40.0%
TGTTGCAAAACTTGTGCTTG+AGG + chr3_1:62998857-62998876 Msa0367310:intron 40.0%
TGATCAGGAGAAAGTTTACG+TGG + chr3_1:62998998-62999017 Msa0367310:intron 40.0%
!! CCTACTTGGTTTTTGATGGA+TGG - chr3_1:62999095-62999114 None:intergenic 40.0%
CCATCCATCAAAAACCAAGT+AGG + chr3_1:62999092-62999111 Msa0367310:three_prime_UTR 40.0%
AAGCTTGAACTTCCAACTCA+AGG + chr3_1:62999134-62999153 Msa0367310:three_prime_UTR 40.0%
GTACATATCACTCATGGTTG+TGG - chr3_1:62999232-62999251 None:intergenic 40.0%
AAAGTGATCGGTGAGAGAGA+AGG - chr3_1:62996711-62996730 None:intergenic 45.0%
! ATGTTAGCCTCTGCAAGCTT+AGG + chr3_1:62996899-62996918 Msa0367310:CDS 45.0%
GCTATGAAGCTGTTCCTTGT+TGG - chr3_1:62996959-62996978 None:intergenic 45.0%
CAACACTGGAAGAACGATGA+TGG + chr3_1:62996991-62997010 Msa0367310:CDS 45.0%
!! AGAACGATGATGGGTTGGAA+AGG + chr3_1:62997001-62997020 Msa0367310:CDS 45.0%
AGTGAAATGCAGCAGTGGAA+TGG + chr3_1:62997057-62997076 Msa0367310:CDS 45.0%
GTGAAATGCAGCAGTGGAAT+GGG + chr3_1:62997058-62997077 Msa0367310:CDS 45.0%
GGATTAGGTGACTTCATTGG+AGG + chr3_1:62997079-62997098 Msa0367310:CDS 45.0%
TTATCGCGTCTTCAACGTCA+AGG + chr3_1:62997205-62997224 Msa0367310:CDS 45.0%
TTTCTTGACCTTACAGCTCG+TGG + chr3_1:62997235-62997254 Msa0367310:CDS 45.0%
AGGGCAAACAGGATGAACTT+TGG - chr3_1:62997287-62997306 None:intergenic 45.0%
TTATGGTGTTCGAGGTGTGT+TGG + chr3_1:62997417-62997436 Msa0367310:intron 45.0%
CGCATGTATCGTTGTACTGT+TGG - chr3_1:62997840-62997859 None:intergenic 45.0%
GAAAGCAACCAATAGCAAGG+TGG + chr3_1:62998044-62998063 Msa0367310:CDS 45.0%
! GGGAAATACCACCTTGCTAT+TGG - chr3_1:62998055-62998074 None:intergenic 45.0%
ACCACCAAATGCTAAAGGAC+TGG + chr3_1:62998105-62998124 Msa0367310:CDS 45.0%
ACCAGTCCTTTAGCATTTGG+TGG - chr3_1:62998109-62998128 None:intergenic 45.0%
ACCAAATGCTAAAGGACTGG+TGG + chr3_1:62998108-62998127 Msa0367310:CDS 45.0%
ACCACCAGTCCTTTAGCATT+TGG - chr3_1:62998112-62998131 None:intergenic 45.0%
! GATTTCTTGGTGGTTTCGTC+AGG - chr3_1:62998581-62998600 None:intergenic 45.0%
ACAACGATCGGATTTCTTGG+TGG - chr3_1:62998591-62998610 None:intergenic 45.0%
!! TGTTGCTTTGGCTGTTCCTT+AGG + chr3_1:62998658-62998677 Msa0367310:intron 45.0%
TGTTCCTTAGGTTCTCTCCA+AGG + chr3_1:62998670-62998689 Msa0367310:intron 45.0%
CTCACATTAGGCCTTAGTGT+TGG - chr3_1:62998722-62998741 None:intergenic 45.0%
CAACACTAAGGCCTAATGTG+AGG + chr3_1:62998720-62998739 Msa0367310:CDS 45.0%
TCAGCAATGACCCTCACATT+AGG - chr3_1:62998734-62998753 None:intergenic 45.0%
AAGCCACTCAACGAAATTGC+TGG + chr3_1:62999021-62999040 Msa0367310:CDS 45.0%
AGTCCAGCAATTTCGTTGAG+TGG - chr3_1:62999027-62999046 None:intergenic 45.0%
TATCTGCAAGTGCCTTGAGT+TGG - chr3_1:62999149-62999168 None:intergenic 45.0%
!!! TTGAAATTTTAATATATTTA+AGG - chr3_1:62997602-62997621 None:intergenic 5.0%
TCCACAACCTAAGCTTGCAG+AGG - chr3_1:62996909-62996928 None:intergenic 50.0%
! TCTGCAAGCTTAGGTTGTGG+AGG + chr3_1:62996908-62996927 Msa0367310:CDS 50.0%
!! CTGGAAGAACGATGATGGGT+TGG + chr3_1:62996996-62997015 Msa0367310:CDS 50.0%
TGCAGCAGTGGAATGGGATT+AGG + chr3_1:62997064-62997083 Msa0367310:CDS 50.0%
CCTTCATACCCTCCTTCATG+AGG - chr3_1:62997178-62997197 None:intergenic 50.0%
! CCTCATGAAGGAGGGTATGA+AGG + chr3_1:62997175-62997194 Msa0367310:CDS 50.0%
GTACAACGATACATGCGGTG+TGG + chr3_1:62997843-62997862 Msa0367310:intron 50.0%
AAGGTGGTATTTCCCACCAG+AGG + chr3_1:62998060-62998079 Msa0367310:CDS 50.0%
! ATGCTAAAGGACTGGTGGTG+TGG + chr3_1:62998113-62998132 Msa0367310:CDS 50.0%
GGTGTGGATCATTGAAGCCA+AGG + chr3_1:62998129-62998148 Msa0367310:CDS 50.0%
GGATCATTGAAGCCAAGGTG+TGG + chr3_1:62998134-62998153 Msa0367310:intron 50.0%
TCAGCCTTGGAGAGAACCTA+AGG - chr3_1:62998677-62998696 None:intergenic 50.0%
!! TTAGTGTTGGCAGCAGAGCA+AGG - chr3_1:62998709-62998728 None:intergenic 50.0%
TTGCTCTGCTGCCAACACTA+AGG + chr3_1:62998708-62998727 Msa0367310:CDS 50.0%
GTGAGGGTCATTGCTGAATG+TGG + chr3_1:62998737-62998756 Msa0367310:CDS 50.0%
CTATCAAGCGTCCTGACTAG+TGG - chr3_1:62999052-62999071 None:intergenic 50.0%
! GCCTCTGCAAGCTTAGGTTG+TGG + chr3_1:62996905-62996924 Msa0367310:CDS 55.0%
AGGGCAGTGAAATGCAGCAG+TGG + chr3_1:62997052-62997071 Msa0367310:CDS 55.0%
GACCTTACAGCTCGTGGTCT+TGG + chr3_1:62997241-62997260 Msa0367310:CDS 55.0%
CACCAAGACCACGAGCTGTA+AGG - chr3_1:62997246-62997265 None:intergenic 55.0%
TGCTGGACTGACCACTAGTC+AGG + chr3_1:62999038-62999057 Msa0367310:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 62996633 62999420 62996633 ID=Msa0367310;Name=Msa0367310
chr3_1 mRNA 62996633 62999420 62996633 ID=Msa0367310-mRNA-1;Parent=Msa0367310;Name=Msa0367310-mRNA-1;_AED=0.00;_eAED=0.00;_QI=266|1|1|1|1|1|4|352|224
chr3_1 exon 62996633 62997306 62996633 ID=Msa0367310-mRNA-1:exon:12324;Parent=Msa0367310-mRNA-1
chr3_1 exon 62998034 62998150 62998034 ID=Msa0367310-mRNA-1:exon:12325;Parent=Msa0367310-mRNA-1
chr3_1 exon 62998680 62998765 62998680 ID=Msa0367310-mRNA-1:exon:12326;Parent=Msa0367310-mRNA-1
chr3_1 exon 62999005 62999420 62999005 ID=Msa0367310-mRNA-1:exon:12327;Parent=Msa0367310-mRNA-1
chr3_1 five_prime_UTR 62996633 62996898 62996633 ID=Msa0367310-mRNA-1:five_prime_utr;Parent=Msa0367310-mRNA-1
chr3_1 CDS 62996899 62997306 62996899 ID=Msa0367310-mRNA-1:cds;Parent=Msa0367310-mRNA-1
chr3_1 CDS 62998034 62998150 62998034 ID=Msa0367310-mRNA-1:cds;Parent=Msa0367310-mRNA-1
chr3_1 CDS 62998680 62998765 62998680 ID=Msa0367310-mRNA-1:cds;Parent=Msa0367310-mRNA-1
chr3_1 CDS 62999005 62999068 62999005 ID=Msa0367310-mRNA-1:cds;Parent=Msa0367310-mRNA-1
chr3_1 three_prime_UTR 62999069 62999420 62999069 ID=Msa0367310-mRNA-1:three_prime_utr;Parent=Msa0367310-mRNA-1
Gene Sequence

>Msa0367310

ATGTTAGCCTCTGCAAGCTTAGGTTGTGGAGGACCAACATGCTCTAACATTCAGCAACCAACAAGGAACAGCTTCATAGCTGAAAATCATAACAACACTGGAAGAACGATGATGGGTTGGAAAGGAAAAGAATGTAACAGTGATAGAAGTAAAAGGGCAGTGAAATGCAGCAGTGGAATGGGATTAGGTGACTTCATTGGAGGAGATTTGGTTAAATTTGATATTGGACGTTGGCTTTCAGATGTTGAAGAACATAAAGCACTTGCAATATATACTCCTCATGAAGGAGGGTATGAAGGACGTTACTTATCGCGTCTTCAACGTCAAGGTTACTATTTTCTTGACCTTACAGCTCGTGGTCTTGGTGATCCTGAAACTACTCTCACCAAAGTTCATCCTGTTTGCCCTGCTCATTTAGGAAAGCAACCAATAGCAAGGTGGTATTTCCCACCAGAGGTTGATTACAGATTGGAAGCATTACCACCAAATGCTAAAGGACTGGTGGTGTGGATCATTGAAGCCAAGGTTCTCTCCAAGGCTGAACTACAATTCCTTGCTCTGCTGCCAACACTAAGGCCTAATGTGAGGGTCATTGCTGAATGTGGAAATTGGAGAAAGTTTACGTGGAAGCCACTCAACGAAATTGCTGGACTGACCACTAGTCAGGACGCTTGA

Protein sequence

>Msa0367310

MLASASLGCGGPTCSNIQQPTRNSFIAENHNNTGRTMMGWKGKECNSDRSKRAVKCSSGMGLGDFIGGDLVKFDIGRWLSDVEEHKALAIYTPHEGGYEGRYLSRLQRQGYYFLDLTARGLGDPETTLTKVHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQFLALLPTLRPNVRVIAECGNWRKFTWKPLNEIAGLTTSQDA*