AlfalfaGEDB | Msa0340870

M. sativa cultivar zhongmu-4 / Msa0340870

KEGG: -
GO: GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576
PFAM: PF00364.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0340870	ABD28385.2	94.712	208	11	0	1	208	75	282	7.09e-139	399

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0340870	sp\|Q06881\|BCCP_NOSS1	31.414	191	103	7	23	198	4	181	2.88e-12	65.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0340870	Q2HVX5	94.712	208	11	0	1	208	75	282	3.39e-139	399

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0340870	0.840647	7.667608e-58	-8.615850e-47
Msa0000220	Msa0340870	0.827412	1.587357e-54	-8.615850e-47
Msa0000610	Msa0340870	0.883758	3.422349e-71	-8.615850e-47
Msa0001040	Msa0340870	0.865697	4.894610e-65	-8.615850e-47
Msa0001510	Msa0340870	0.849201	3.763347e-60	-8.615850e-47
Msa0002110	Msa0340870	0.854741	1.005899e-61	-8.615850e-47
Msa0002690	Msa0340870	0.870221	1.719360e-66	-8.615850e-47
Msa0002700	Msa0340870	0.868670	5.494770e-66	-8.615850e-47
Msa0003340	Msa0340870	0.898829	3.612987e-77	-8.615850e-47
Msa0003450	Msa0340870	0.802831	4.655297e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0340870	MtrunA17_Chr2g0332621	94.712	208	11	0	1	208	70	277	6.80e-143	399
Msa0340870	MtrunA17_Chr5g0437771	36.715	207	125	4	2	204	75	279	6.40e-34	122
Msa0340870	MtrunA17_Chr3g0114231	35.821	201	113	4	16	204	78	274	4.19e-31	114

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0340870	AT3G15690.2	58.500	200	72	2	8	207	75	263	2.06e-77	233
Msa0340870	AT1G52670.1	55.224	201	88	2	8	207	75	274	1.64e-68	211
Msa0340870	AT3G15690.3	54.802	177	69	2	8	184	77	242	2.52e-61	192
Msa0340870	AT3G15690.1	54.802	177	69	2	8	184	75	240	2.67e-61	192
Msa0340870	AT3G56130.1	37.374	198	102	4	21	203	88	278	4.45e-35	125
Msa0340870	AT3G56130.2	36.458	192	102	3	27	203	16	202	3.90e-34	120
Msa0340870	AT3G56130.3	55.319	94	42	0	110	203	98	191	4.88e-31	112
Msa0340870	AT3G56130.4	34.078	179	96	4	21	184	88	259	1.10e-24	98.2
Msa0340870	AT3G56130.5	31.288	163	90	4	21	168	88	243	6.45e-17	77.0

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Find 66 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTGCAGATGAAGGGT+TGG	0.594334	2_4:+62259764	Msa0340870:CDS
AAAGAATGAGAATGGAGGGT+TGG	0.559129	2_4:-62260647	None:intergenic
AAGATTCTAAGAGAGGATGG+CGG	0.764705	2_4:+62260293	Msa0340870:CDS
AATGATATATATCAGCTTGA+TGG	0.374079	2_4:+62259555	Msa0340870:intron
AATGTAGAAACTGATCCATT+TGG	0.403959	2_4:-62259681	None:intergenic
AATTGTACCTCATTACATGA+AGG	0.567951	2_4:-62259919	None:intergenic
ACAGCTGTTTCAAGGTCAGA+AGG	0.607336	2_4:+62259123	None:intergenic
ACAGGAGCAGGAATTGAAGG+AGG	0.687530	2_4:-62259627	None:intergenic
ACCTTCTTCATTGTCTATCG+AGG	0.541849	2_4:+62259731	Msa0340870:CDS
ACGAGAAAGAATGAGAATGG+AGG	0.597759	2_4:-62260652	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTGAAGAGATTAAATCTTC+TGG	+	chr2_4:62259150-62259169	Msa0340870:CDS	30.0%
CAATGAAGAAGAAACAACAA+AGG	-	chr2_4:62259517-62259536	None:intergenic	30.0%
GATATATATCATTTGGAGGT+TGG	-	chr2_4:62259548-62259567	None:intergenic	30.0%
AGCTGATATATATCATTTGG+AGG	-	chr2_4:62259552-62259571	None:intergenic	30.0%
AATGTAGAAACTGATCCATT+TGG	-	chr2_4:62259684-62259703	None:intergenic	30.0%
AGTTTCTACATTGACAACAT+TGG	+	chr2_4:62259692-62259711	Msa0340870:CDS	30.0%
AATTGTACCTCATTACATGA+AGG	-	chr2_4:62259922-62259941	None:intergenic	30.0%
ATGTAATGAGGTACAATTGA+AGG	+	chr2_4:62259924-62259943	Msa0340870:intron	30.0%
TTTAATACACAAACCTCAAC+TGG	-	chr2_4:62260141-62260160	None:intergenic	30.0%
CAGACTAGAAAGAAATTTGA+AGG	-	chr2_4:62260253-62260272	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	62259129	62260670	62259129	ID=Msa0340870;Name=Msa0340870
chr2_4	mRNA	62259129	62260670	62259129	ID=Msa0340870-mRNA-1;Parent=Msa0340870;Name=Msa0340870-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|0.83\|0.71\|1\|0.83\|0.71\|7\|190\|208
chr2_4	exon	62259129	62259206	62259129	ID=Msa0340870-mRNA-1:exon:19727;Parent=Msa0340870-mRNA-1
chr2_4	exon	62259376	62259435	62259376	ID=Msa0340870-mRNA-1:exon:19728;Parent=Msa0340870-mRNA-1
chr2_4	exon	62259570	62259806	62259570	ID=Msa0340870-mRNA-1:exon:19729;Parent=Msa0340870-mRNA-1
chr2_4	exon	62259871	62259933	62259871	ID=Msa0340870-mRNA-1:exon:19730;Parent=Msa0340870-mRNA-1
chr2_4	exon	62260078	62260146	62260078	ID=Msa0340870-mRNA-1:exon:19731;Parent=Msa0340870-mRNA-1
chr2_4	exon	62260269	62260314	62260269	ID=Msa0340870-mRNA-1:exon:19732;Parent=Msa0340870-mRNA-1
chr2_4	exon	62260407	62260670	62260407	ID=Msa0340870-mRNA-1:exon:19733;Parent=Msa0340870-mRNA-1
chr2_4	CDS	62259129	62259206	62259129	ID=Msa0340870-mRNA-1:cds;Parent=Msa0340870-mRNA-1
chr2_4	CDS	62259376	62259435	62259376	ID=Msa0340870-mRNA-1:cds;Parent=Msa0340870-mRNA-1
chr2_4	CDS	62259570	62259806	62259570	ID=Msa0340870-mRNA-1:cds;Parent=Msa0340870-mRNA-1
chr2_4	CDS	62259871	62259933	62259871	ID=Msa0340870-mRNA-1:cds;Parent=Msa0340870-mRNA-1
chr2_4	CDS	62260078	62260146	62260078	ID=Msa0340870-mRNA-1:cds;Parent=Msa0340870-mRNA-1
chr2_4	CDS	62260269	62260314	62260269	ID=Msa0340870-mRNA-1:cds;Parent=Msa0340870-mRNA-1
chr2_4	CDS	62260407	62260480	62260407	ID=Msa0340870-mRNA-1:cds;Parent=Msa0340870-mRNA-1
chr2_4	three_prime_UTR	62260481	62260670	62260481	ID=Msa0340870-mRNA-1:three_prime_utr;Parent=Msa0340870-mRNA-1

Gene Sequence

>Msa0340870

GTTTCAAGGTCAGAAGGTGGTTCTGAAGAGATTAAATCTTCTGGTTTGACAAGTGAACTGTTTCCCAATTTTAATGATGTGGAATTCTTGGTCACTAACTTATGTGAGACGGCATCAATTGGAGAGCTAGAATTAAAACTTGATGGATTTCACCTGCGTGTAGTGAGGGATTTGACTGAAAAATCTAAAACACTTCCTCCTTCAATTCCTGCTCCTGTAAGTATAAATACACCCGCAGAAGCACCTAAACCAAATGGATCAGTTTCTACATTGACAACATTGGCCATCTCGAAACCAGTACCTTCTTCATTGTCTATCGAGGGATTCCTAGAAAAAGCTGCAGATGAAGGGTTGGTGATAATTCATTCTCCAACGGTTGGCATCTTCAGAAGATCTCGGACGATAAAGGGAAAACGTGCTCCTCCTTCATGTAATGAGATGCAAAAAGTTGAGGACGGGAAAGTGATTTGTTACATTGAACAGCTTGGTGGGCAGCTACCAGTTGAGTCTGACGTGTCCGGGGAGGTCATCAAGATTCTAAGAGAGGATGGCGATCCAGTTGGTTATGGTGATGCACTTATAGCAATATTGCCGTCATTTCCCGGAATAAAGAAGCTTCAATATTGA

Protein sequence

>Msa0340870

VSRSEGGSEEIKSSGLTSELFPNFNDVEFLVTNLCETASIGELELKLDGFHLRVVRDLTEKSKTLPPSIPAPVSINTPAEAPKPNGSVSTLTTLAISKPVPSSLSIEGFLEKAADEGLVIIHSPTVGIFRRSRTIKGKRAPPSCNEMQKVEDGKVICYIEQLGGQLPVESDVSGEVIKILREDGDPVGYGDALIAILPSFPGIKKLQY*