AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0340870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0340870 MtrunA17_Chr2g0332621 94.712 208 11 0 1 208 70 277 6.80e-143 399
Msa0340870 MtrunA17_Chr5g0437771 36.715 207 125 4 2 204 75 279 6.40e-34 122
Msa0340870 MtrunA17_Chr3g0114231 35.821 201 113 4 16 204 78 274 4.19e-31 114
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0340870 AT3G15690.2 58.500 200 72 2 8 207 75 263 2.06e-77 233
Msa0340870 AT1G52670.1 55.224 201 88 2 8 207 75 274 1.64e-68 211
Msa0340870 AT3G15690.3 54.802 177 69 2 8 184 77 242 2.52e-61 192
Msa0340870 AT3G15690.1 54.802 177 69 2 8 184 75 240 2.67e-61 192
Msa0340870 AT3G56130.1 37.374 198 102 4 21 203 88 278 4.45e-35 125
Msa0340870 AT3G56130.2 36.458 192 102 3 27 203 16 202 3.90e-34 120
Msa0340870 AT3G56130.3 55.319 94 42 0 110 203 98 191 4.88e-31 112
Msa0340870 AT3G56130.4 34.078 179 96 4 21 184 88 259 1.10e-24 98.2
Msa0340870 AT3G56130.5 31.288 163 90 4 21 168 88 243 6.45e-17 77.0

Find 66 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCACTAACATCATTAAAAT+TGG 0.116441 2_4:-62259193 None:intergenic
CTCTTTGCAGGTGGAATTCT+TGG 0.142729 2_4:+62259366 Msa0340870:intron
TTTATCCTTATCTTCCCTTT+TGG 0.207575 2_4:-62260621 None:intergenic
GCGGGTGTATTTATACTTAC+AGG 0.253090 2_4:-62259645 None:intergenic
ATATTGAAGCTTCTTTATTC+CGG 0.272327 2_4:-62260455 None:intergenic
GAAACTGATCCATTTGGTTT+AGG 0.301102 2_4:-62259675 None:intergenic
TCTGAAGAGATTAAATCTTC+TGG 0.320860 2_4:+62259150 Msa0340870:CDS
TATTGAAGCTTCTTTATTCC+GGG 0.339110 2_4:-62260454 None:intergenic
TTGAGAACAAGTTATATATA+TGG 0.339886 2_4:+62260538 Msa0340870:three_prime_UTR
CAGAAGATCTCGGACGATAA+AGG 0.350185 2_4:+62259882 Msa0340870:CDS
GCAATATTGCCGTCATTTCC+CGG 0.364958 2_4:+62260436 Msa0340870:CDS
GATGATAAACAGCTGTTTCA+AGG 0.373445 2_4:+62259115 None:intergenic
AATGATATATATCAGCTTGA+TGG 0.374079 2_4:+62259555 Msa0340870:intron
GTGACAGATCCAGTTGGTTA+TGG 0.384983 2_4:+62260400 Msa0340870:intron
TCTTTCTAGTCTGACGTGTC+CGG 0.391008 2_4:+62260260 Msa0340870:intron
CTTTCTAGTCTGACGTGTCC+GGG 0.391958 2_4:+62260261 Msa0340870:intron
AGAAGATCTCGGACGATAAA+GGG 0.403087 2_4:+62259883 Msa0340870:CDS
AATGTAGAAACTGATCCATT+TGG 0.403959 2_4:-62259681 None:intergenic
TTTAATACACAAACCTCAAC+TGG 0.428231 2_4:-62260138 None:intergenic
TTATGTGAGACGGCATCAAT+TGG 0.434687 2_4:+62259397 Msa0340870:CDS
TTAAGAGTGTTGAATACTGC+AGG 0.442291 2_4:-62260581 None:intergenic
GCACTAACATCATTAAAATT+GGG 0.455388 2_4:-62259192 None:intergenic
CTTACAGGAGCAGGAATTGA+AGG 0.477237 2_4:-62259630 None:intergenic
TCAACGAGAAAGAATGAGAA+TGG 0.488105 2_4:-62260655 None:intergenic
TTCTTTATTCCGGGAAATGA+CGG 0.488727 2_4:-62260445 None:intergenic
TGGTGGGCAGCTACCAGTTG+AGG 0.498148 2_4:+62260125 Msa0340870:CDS
TTTGGTTTAGGTGCTTCTGC+GGG 0.511687 2_4:-62259663 None:intergenic
GCAGAAGCACCTAAACCAAA+TGG 0.516816 2_4:+62259666 Msa0340870:CDS
AGTGCATCACCATAACCAAC+TGG 0.518295 2_4:-62260409 None:intergenic
CCTTCTTCATTGTCTATCGA+GGG 0.519793 2_4:+62259732 Msa0340870:CDS
ATAGACAATGAAGAAGGTAC+TGG 0.526221 2_4:-62259726 None:intergenic
TAGAATCTTGATGACCTCCC+CGG 0.535783 2_4:-62260279 None:intergenic
ACCTTCTTCATTGTCTATCG+AGG 0.541849 2_4:+62259731 Msa0340870:CDS
GTATTTATACTTACAGGAGC+AGG 0.544888 2_4:-62259639 None:intergenic
ATTTGGTTTAGGTGCTTCTG+CGG 0.545135 2_4:-62259664 None:intergenic
AGTTTCTACATTGACAACAT+TGG 0.552501 2_4:+62259692 Msa0340870:CDS
AAAGAATGAGAATGGAGGGT+TGG 0.559129 2_4:-62260647 None:intergenic
TGCTCCTCCTTCATGTAATG+AGG 0.560231 2_4:+62259912 Msa0340870:CDS
CCCTCGATAGACAATGAAGA+AGG 0.562111 2_4:-62259732 None:intergenic
TGTTACATTGAACAGCTTGG+TGG 0.563421 2_4:+62260108 Msa0340870:CDS
ATTTCACCTGCGTGTAGTGA+GGG 0.566652 2_4:+62259578 Msa0340870:CDS
AATTGTACCTCATTACATGA+AGG 0.567951 2_4:-62259919 None:intergenic
CGAGAAAGAATGAGAATGGA+GGG 0.581044 2_4:-62260651 None:intergenic
GTTACATTGAACAGCTTGGT+GGG 0.584700 2_4:+62260109 Msa0340870:CDS
ATCAAGATTCTAAGAGAGGA+TGG 0.587641 2_4:+62260290 Msa0340870:CDS
TTGGCATCTTCAGAAGATCT+CGG 0.594306 2_4:+62259872 Msa0340870:CDS
AAAAGCTGCAGATGAAGGGT+TGG 0.594334 2_4:+62259764 Msa0340870:CDS
ATTTGTTACATTGAACAGCT+TGG 0.595450 2_4:+62260105 Msa0340870:CDS
GATTTCACCTGCGTGTAGTG+AGG 0.596484 2_4:+62259577 Msa0340870:CDS
ACGAGAAAGAATGAGAATGG+AGG 0.597759 2_4:-62260652 None:intergenic
GGTGATAATTCATTCTCCAA+CGG 0.599409 2_4:+62259785 Msa0340870:CDS
TTTCTAGTCTGACGTGTCCG+GGG 0.599859 2_4:+62260262 Msa0340870:intron
ACAGCTGTTTCAAGGTCAGA+AGG 0.607336 2_4:+62259123 None:intergenic
GAACAAGTTATATATATGGT+AGG 0.609147 2_4:+62260542 Msa0340870:three_prime_UTR
TATTCAACACTCTTAAACTG+AGG 0.616680 2_4:+62260588 Msa0340870:three_prime_UTR
GGTCATCAAGATTCTAAGAG+AGG 0.618953 2_4:+62260286 Msa0340870:CDS
TAAGAGTGTTGAATACTGCA+GGG 0.627436 2_4:-62260580 None:intergenic
CTAGTCTGACGTGTCCGGGG+AGG 0.637170 2_4:+62260265 Msa0340870:intron
AGAAGGTACTGGTTTCGAGA+TGG 0.639561 2_4:-62259715 None:intergenic
GGTCACTAACTTATGTGAGA+CGG 0.640399 2_4:+62259387 Msa0340870:CDS
TGTACCTCATTACATGAAGG+AGG 0.650394 2_4:-62259916 None:intergenic
GCTGTTTCAAGGTCAGAAGG+TGG 0.666496 2_4:+62259126 None:intergenic
ACAGGAGCAGGAATTGAAGG+AGG 0.687530 2_4:-62259627 None:intergenic
TCAAATCCCTCACTACACGC+AGG 0.704009 2_4:-62259584 None:intergenic
GTGTTTGTGACAGATCCAGT+TGG 0.712286 2_4:+62260394 Msa0340870:intron
AAGATTCTAAGAGAGGATGG+CGG 0.764705 2_4:+62260293 Msa0340870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAACAGATAAAAAATAG+AGG - chr2_4:62260330-62260349 None:intergenic 15.0%
!! TTTAAACAGATAAAAAATAG+AGG - chr2_4:62260330-62260349 None:intergenic 15.0%
!!! CAAAGAGATTTAAGTTATAT+AGG - chr2_4:62259353-62259372 None:intergenic 20.0%
!!! TTTTAGAGTAGATTATTGAA+AGG - chr2_4:62259842-62259861 None:intergenic 20.0%
!! GTAATAGTAACTATAGTAAA+TGG - chr2_4:62260206-62260225 None:intergenic 20.0%
!! TACTATAGTTACTATTACAA+TGG + chr2_4:62260208-62260227 Msa0340870:intron 20.0%
!!! AACATAATGACATTTTTATG+TGG + chr2_4:62260348-62260367 Msa0340870:intron 20.0%
!! TTGAGAACAAGTTATATATA+TGG + chr2_4:62260538-62260557 Msa0340870:three_prime_UTR 20.0%
!!! CAAAGAGATTTAAGTTATAT+AGG - chr2_4:62259353-62259372 None:intergenic 20.0%
!!! TTTTAGAGTAGATTATTGAA+AGG - chr2_4:62259842-62259861 None:intergenic 20.0%
!! GTAATAGTAACTATAGTAAA+TGG - chr2_4:62260206-62260225 None:intergenic 20.0%
!! TACTATAGTTACTATTACAA+TGG + chr2_4:62260208-62260227 Msa0340870:intron 20.0%
!!! AACATAATGACATTTTTATG+TGG + chr2_4:62260348-62260367 Msa0340870:intron 20.0%
!! TTGAGAACAAGTTATATATA+TGG + chr2_4:62260538-62260557 Msa0340870:three_prime_UTR 20.0%
! GCACTAACATCATTAAAATT+GGG - chr2_4:62259195-62259214 None:intergenic 25.0%
! TGCACTAACATCATTAAAAT+TGG - chr2_4:62259196-62259215 None:intergenic 25.0%
!! TTTGTTATATTGATGCTGAA+TGG - chr2_4:62259267-62259286 None:intergenic 25.0%
! TATAACTTAAATCTCTTTGC+AGG + chr2_4:62259354-62259373 Msa0340870:intron 25.0%
! TAGAGTACGTGAAAAATATT+GGG - chr2_4:62259481-62259500 None:intergenic 25.0%
! ATAGAGTACGTGAAAAATAT+TGG - chr2_4:62259482-62259501 None:intergenic 25.0%
! ATATATATCATTTGGAGGTT+GGG - chr2_4:62259547-62259566 None:intergenic 25.0%
! TCAAGCTGATATATATCATT+TGG - chr2_4:62259555-62259574 None:intergenic 25.0%
! AATGATATATATCAGCTTGA+TGG + chr2_4:62259555-62259574 Msa0340870:intron 25.0%
! ATATTGAAGCTTCTTTATTC+CGG - chr2_4:62260458-62260477 None:intergenic 25.0%
! GAACAAGTTATATATATGGT+AGG + chr2_4:62260542-62260561 Msa0340870:three_prime_UTR 25.0%
! GCACTAACATCATTAAAATT+GGG - chr2_4:62259195-62259214 None:intergenic 25.0%
! TGCACTAACATCATTAAAAT+TGG - chr2_4:62259196-62259215 None:intergenic 25.0%
!! TTTGTTATATTGATGCTGAA+TGG - chr2_4:62259267-62259286 None:intergenic 25.0%
! TATAACTTAAATCTCTTTGC+AGG + chr2_4:62259354-62259373 Msa0340870:intron 25.0%
! TAGAGTACGTGAAAAATATT+GGG - chr2_4:62259481-62259500 None:intergenic 25.0%
! ATAGAGTACGTGAAAAATAT+TGG - chr2_4:62259482-62259501 None:intergenic 25.0%
! ATATATATCATTTGGAGGTT+GGG - chr2_4:62259547-62259566 None:intergenic 25.0%
! TCAAGCTGATATATATCATT+TGG - chr2_4:62259555-62259574 None:intergenic 25.0%
! AATGATATATATCAGCTTGA+TGG + chr2_4:62259555-62259574 Msa0340870:intron 25.0%
! ATATTGAAGCTTCTTTATTC+CGG - chr2_4:62260458-62260477 None:intergenic 25.0%
! GAACAAGTTATATATATGGT+AGG + chr2_4:62260542-62260561 Msa0340870:three_prime_UTR 25.0%
TCTGAAGAGATTAAATCTTC+TGG + chr2_4:62259150-62259169 Msa0340870:CDS 30.0%
CAATGAAGAAGAAACAACAA+AGG - chr2_4:62259517-62259536 None:intergenic 30.0%
GATATATATCATTTGGAGGT+TGG - chr2_4:62259548-62259567 None:intergenic 30.0%
AGCTGATATATATCATTTGG+AGG - chr2_4:62259552-62259571 None:intergenic 30.0%
AATGTAGAAACTGATCCATT+TGG - chr2_4:62259684-62259703 None:intergenic 30.0%
AGTTTCTACATTGACAACAT+TGG + chr2_4:62259692-62259711 Msa0340870:CDS 30.0%
AATTGTACCTCATTACATGA+AGG - chr2_4:62259922-62259941 None:intergenic 30.0%
ATGTAATGAGGTACAATTGA+AGG + chr2_4:62259924-62259943 Msa0340870:intron 30.0%
! ATTTGTTACATTGAACAGCT+TGG + chr2_4:62260105-62260124 Msa0340870:CDS 30.0%
TTTAATACACAAACCTCAAC+TGG - chr2_4:62260141-62260160 None:intergenic 30.0%
CAGACTAGAAAGAAATTTGA+AGG - chr2_4:62260253-62260272 None:intergenic 30.0%
TATTGAAGCTTCTTTATTCC+GGG - chr2_4:62260457-62260476 None:intergenic 30.0%
TATTCAACACTCTTAAACTG+AGG + chr2_4:62260588-62260607 Msa0340870:three_prime_UTR 30.0%
!!! TGAGGTTATTTTTTCCCAAA+AGG + chr2_4:62260606-62260625 Msa0340870:three_prime_UTR 30.0%
!!! GAGGTTATTTTTTCCCAAAA+GGG + chr2_4:62260607-62260626 Msa0340870:three_prime_UTR 30.0%
! TTATCCTTATCTTCCCTTTT+GGG - chr2_4:62260623-62260642 None:intergenic 30.0%
! TTTATCCTTATCTTCCCTTT+TGG - chr2_4:62260624-62260643 None:intergenic 30.0%
TCTGAAGAGATTAAATCTTC+TGG + chr2_4:62259150-62259169 Msa0340870:CDS 30.0%
CAATGAAGAAGAAACAACAA+AGG - chr2_4:62259517-62259536 None:intergenic 30.0%
GATATATATCATTTGGAGGT+TGG - chr2_4:62259548-62259567 None:intergenic 30.0%
AGCTGATATATATCATTTGG+AGG - chr2_4:62259552-62259571 None:intergenic 30.0%
AATGTAGAAACTGATCCATT+TGG - chr2_4:62259684-62259703 None:intergenic 30.0%
AGTTTCTACATTGACAACAT+TGG + chr2_4:62259692-62259711 Msa0340870:CDS 30.0%
AATTGTACCTCATTACATGA+AGG - chr2_4:62259922-62259941 None:intergenic 30.0%
ATGTAATGAGGTACAATTGA+AGG + chr2_4:62259924-62259943 Msa0340870:intron 30.0%
! ATTTGTTACATTGAACAGCT+TGG + chr2_4:62260105-62260124 Msa0340870:CDS 30.0%
TTTAATACACAAACCTCAAC+TGG - chr2_4:62260141-62260160 None:intergenic 30.0%
CAGACTAGAAAGAAATTTGA+AGG - chr2_4:62260253-62260272 None:intergenic 30.0%
TATTGAAGCTTCTTTATTCC+GGG - chr2_4:62260457-62260476 None:intergenic 30.0%
TATTCAACACTCTTAAACTG+AGG + chr2_4:62260588-62260607 Msa0340870:three_prime_UTR 30.0%
!!! TGAGGTTATTTTTTCCCAAA+AGG + chr2_4:62260606-62260625 Msa0340870:three_prime_UTR 30.0%
!!! GAGGTTATTTTTTCCCAAAA+GGG + chr2_4:62260607-62260626 Msa0340870:three_prime_UTR 30.0%
! TTATCCTTATCTTCCCTTTT+GGG - chr2_4:62260623-62260642 None:intergenic 30.0%
! TTTATCCTTATCTTCCCTTT+TGG - chr2_4:62260624-62260643 None:intergenic 30.0%
AACTTAAATCTCTTTGCAGG+TGG + chr2_4:62259357-62259376 Msa0340870:intron 35.0%
GTATTTATACTTACAGGAGC+AGG - chr2_4:62259642-62259661 None:intergenic 35.0%
! GAAACTGATCCATTTGGTTT+AGG - chr2_4:62259678-62259697 None:intergenic 35.0%
! ATAGACAATGAAGAAGGTAC+TGG - chr2_4:62259729-62259748 None:intergenic 35.0%
TAGAAAAAGCTGCAGATGAA+GGG + chr2_4:62259760-62259779 Msa0340870:CDS 35.0%
GGTGATAATTCATTCTCCAA+CGG + chr2_4:62259785-62259804 Msa0340870:CDS 35.0%
!!! TTGTTTTAGAGTCTTACCGT+TGG - chr2_4:62259804-62259823 None:intergenic 35.0%
GATTTCTCAACATACACATG+AGG - chr2_4:62260014-62260033 None:intergenic 35.0%
TTGACAGATGCAAAAAGTTG+AGG + chr2_4:62260071-62260090 Msa0340870:intron 35.0%
! ATCAAGATTCTAAGAGAGGA+TGG + chr2_4:62260290-62260309 Msa0340870:CDS 35.0%
TTCTTTATTCCGGGAAATGA+CGG - chr2_4:62260448-62260467 None:intergenic 35.0%
!! TAAGAGTGTTGAATACTGCA+GGG - chr2_4:62260583-62260602 None:intergenic 35.0%
!! TTAAGAGTGTTGAATACTGC+AGG - chr2_4:62260584-62260603 None:intergenic 35.0%
! TTTTCCCAAAAGGGAAGATA+AGG + chr2_4:62260616-62260635 Msa0340870:three_prime_UTR 35.0%
AACTTAAATCTCTTTGCAGG+TGG + chr2_4:62259357-62259376 Msa0340870:intron 35.0%
GTATTTATACTTACAGGAGC+AGG - chr2_4:62259642-62259661 None:intergenic 35.0%
! GAAACTGATCCATTTGGTTT+AGG - chr2_4:62259678-62259697 None:intergenic 35.0%
! ATAGACAATGAAGAAGGTAC+TGG - chr2_4:62259729-62259748 None:intergenic 35.0%
TAGAAAAAGCTGCAGATGAA+GGG + chr2_4:62259760-62259779 Msa0340870:CDS 35.0%
GGTGATAATTCATTCTCCAA+CGG + chr2_4:62259785-62259804 Msa0340870:CDS 35.0%
!!! TTGTTTTAGAGTCTTACCGT+TGG - chr2_4:62259804-62259823 None:intergenic 35.0%
GATTTCTCAACATACACATG+AGG - chr2_4:62260014-62260033 None:intergenic 35.0%
TTGACAGATGCAAAAAGTTG+AGG + chr2_4:62260071-62260090 Msa0340870:intron 35.0%
! ATCAAGATTCTAAGAGAGGA+TGG + chr2_4:62260290-62260309 Msa0340870:CDS 35.0%
TTCTTTATTCCGGGAAATGA+CGG - chr2_4:62260448-62260467 None:intergenic 35.0%
!! TAAGAGTGTTGAATACTGCA+GGG - chr2_4:62260583-62260602 None:intergenic 35.0%
!! TTAAGAGTGTTGAATACTGC+AGG - chr2_4:62260584-62260603 None:intergenic 35.0%
! TTTTCCCAAAAGGGAAGATA+AGG + chr2_4:62260616-62260635 Msa0340870:three_prime_UTR 35.0%
GGTCACTAACTTATGTGAGA+CGG + chr2_4:62259387-62259406 Msa0340870:CDS 40.0%
TTATGTGAGACGGCATCAAT+TGG + chr2_4:62259397-62259416 Msa0340870:CDS 40.0%
GCGGGTGTATTTATACTTAC+AGG - chr2_4:62259648-62259667 None:intergenic 40.0%
! ATTTGGTTTAGGTGCTTCTG+CGG - chr2_4:62259667-62259686 None:intergenic 40.0%
ACCTTCTTCATTGTCTATCG+AGG + chr2_4:62259731-62259750 Msa0340870:CDS 40.0%
CCTTCTTCATTGTCTATCGA+GGG + chr2_4:62259732-62259751 Msa0340870:CDS 40.0%
!! CTTCATCTGCAGCTTTTTCT+AGG - chr2_4:62259761-62259780 None:intergenic 40.0%
CTAGAAAAAGCTGCAGATGA+AGG + chr2_4:62259759-62259778 Msa0340870:CDS 40.0%
!! ATCTACTCTAAAACCAGAGC+AGG + chr2_4:62259849-62259868 Msa0340870:intron 40.0%
TTGGCATCTTCAGAAGATCT+CGG + chr2_4:62259872-62259891 Msa0340870:CDS 40.0%
AGAAGATCTCGGACGATAAA+GGG + chr2_4:62259883-62259902 Msa0340870:CDS 40.0%
TGTACCTCATTACATGAAGG+AGG - chr2_4:62259919-62259938 None:intergenic 40.0%
!! GGCCTTTCCTTCTCATTTTT+CGG + chr2_4:62259945-62259964 Msa0340870:intron 40.0%
!! GCCTTTCCTTCTCATTTTTC+GGG + chr2_4:62259946-62259965 Msa0340870:intron 40.0%
!!! TTTCCTTCTCATTTTTCGGG+CGG + chr2_4:62259949-62259968 Msa0340870:intron 40.0%
CAGATGCAAAAAGTTGAGGA+CGG + chr2_4:62260075-62260094 Msa0340870:intron 40.0%
AGATGCAAAAAGTTGAGGAC+GGG + chr2_4:62260076-62260095 Msa0340870:intron 40.0%
TGTTACATTGAACAGCTTGG+TGG + chr2_4:62260108-62260127 Msa0340870:CDS 40.0%
GTTACATTGAACAGCTTGGT+GGG + chr2_4:62260109-62260128 Msa0340870:CDS 40.0%
GATGAGAATCTGAAAGAGCT+AGG - chr2_4:62260171-62260190 None:intergenic 40.0%
! GGTCATCAAGATTCTAAGAG+AGG + chr2_4:62260286-62260305 Msa0340870:CDS 40.0%
! AAGATTCTAAGAGAGGATGG+CGG + chr2_4:62260293-62260312 Msa0340870:CDS 40.0%
AAAGAATGAGAATGGAGGGT+TGG - chr2_4:62260650-62260669 None:intergenic 40.0%
GGTCACTAACTTATGTGAGA+CGG + chr2_4:62259387-62259406 Msa0340870:CDS 40.0%
TTATGTGAGACGGCATCAAT+TGG + chr2_4:62259397-62259416 Msa0340870:CDS 40.0%
GCGGGTGTATTTATACTTAC+AGG - chr2_4:62259648-62259667 None:intergenic 40.0%
! ATTTGGTTTAGGTGCTTCTG+CGG - chr2_4:62259667-62259686 None:intergenic 40.0%
ACCTTCTTCATTGTCTATCG+AGG + chr2_4:62259731-62259750 Msa0340870:CDS 40.0%
CCTTCTTCATTGTCTATCGA+GGG + chr2_4:62259732-62259751 Msa0340870:CDS 40.0%
!! CTTCATCTGCAGCTTTTTCT+AGG - chr2_4:62259761-62259780 None:intergenic 40.0%
CTAGAAAAAGCTGCAGATGA+AGG + chr2_4:62259759-62259778 Msa0340870:CDS 40.0%
!! ATCTACTCTAAAACCAGAGC+AGG + chr2_4:62259849-62259868 Msa0340870:intron 40.0%
TTGGCATCTTCAGAAGATCT+CGG + chr2_4:62259872-62259891 Msa0340870:CDS 40.0%
AGAAGATCTCGGACGATAAA+GGG + chr2_4:62259883-62259902 Msa0340870:CDS 40.0%
TGTACCTCATTACATGAAGG+AGG - chr2_4:62259919-62259938 None:intergenic 40.0%
!! GGCCTTTCCTTCTCATTTTT+CGG + chr2_4:62259945-62259964 Msa0340870:intron 40.0%
!! GCCTTTCCTTCTCATTTTTC+GGG + chr2_4:62259946-62259965 Msa0340870:intron 40.0%
!!! TTTCCTTCTCATTTTTCGGG+CGG + chr2_4:62259949-62259968 Msa0340870:intron 40.0%
CAGATGCAAAAAGTTGAGGA+CGG + chr2_4:62260075-62260094 Msa0340870:intron 40.0%
AGATGCAAAAAGTTGAGGAC+GGG + chr2_4:62260076-62260095 Msa0340870:intron 40.0%
TGTTACATTGAACAGCTTGG+TGG + chr2_4:62260108-62260127 Msa0340870:CDS 40.0%
GTTACATTGAACAGCTTGGT+GGG + chr2_4:62260109-62260128 Msa0340870:CDS 40.0%
GATGAGAATCTGAAAGAGCT+AGG - chr2_4:62260171-62260190 None:intergenic 40.0%
! GGTCATCAAGATTCTAAGAG+AGG + chr2_4:62260286-62260305 Msa0340870:CDS 40.0%
! AAGATTCTAAGAGAGGATGG+CGG + chr2_4:62260293-62260312 Msa0340870:CDS 40.0%
AAAGAATGAGAATGGAGGGT+TGG - chr2_4:62260650-62260669 None:intergenic 40.0%
CTCTTTGCAGGTGGAATTCT+TGG + chr2_4:62259366-62259385 Msa0340870:intron 45.0%
ATTTCACCTGCGTGTAGTGA+GGG + chr2_4:62259578-62259597 Msa0340870:CDS 45.0%
CTTACAGGAGCAGGAATTGA+AGG - chr2_4:62259633-62259652 None:intergenic 45.0%
! TTTGGTTTAGGTGCTTCTGC+GGG - chr2_4:62259666-62259685 None:intergenic 45.0%
!! GCAGAAGCACCTAAACCAAA+TGG + chr2_4:62259666-62259685 Msa0340870:CDS 45.0%
!! AGAAGGTACTGGTTTCGAGA+TGG - chr2_4:62259718-62259737 None:intergenic 45.0%
CCCTCGATAGACAATGAAGA+AGG - chr2_4:62259735-62259754 None:intergenic 45.0%
AAAAGCTGCAGATGAAGGGT+TGG + chr2_4:62259764-62259783 Msa0340870:CDS 45.0%
!! ACTCTAAAACCAGAGCAGGT+TGG + chr2_4:62259853-62259872 Msa0340870:intron 45.0%
CAGAAGATCTCGGACGATAA+AGG + chr2_4:62259882-62259901 Msa0340870:CDS 45.0%
TGCTCCTCCTTCATGTAATG+AGG + chr2_4:62259912-62259931 Msa0340870:CDS 45.0%
GCCCGAAAAATGAGAAGGAA+AGG - chr2_4:62259950-62259969 None:intergenic 45.0%
! TCTTTCTAGTCTGACGTGTC+CGG + chr2_4:62260260-62260279 Msa0340870:intron 45.0%
! TAGAATCTTGATGACCTCCC+CGG - chr2_4:62260282-62260301 None:intergenic 45.0%
GTGTTTGTGACAGATCCAGT+TGG + chr2_4:62260394-62260413 Msa0340870:intron 45.0%
GTGACAGATCCAGTTGGTTA+TGG + chr2_4:62260400-62260419 Msa0340870:intron 45.0%
AGTGCATCACCATAACCAAC+TGG - chr2_4:62260412-62260431 None:intergenic 45.0%
GCAATATTGCCGTCATTTCC+CGG + chr2_4:62260436-62260455 Msa0340870:CDS 45.0%
CTCTTTGCAGGTGGAATTCT+TGG + chr2_4:62259366-62259385 Msa0340870:intron 45.0%
ATTTCACCTGCGTGTAGTGA+GGG + chr2_4:62259578-62259597 Msa0340870:CDS 45.0%
CTTACAGGAGCAGGAATTGA+AGG - chr2_4:62259633-62259652 None:intergenic 45.0%
! TTTGGTTTAGGTGCTTCTGC+GGG - chr2_4:62259666-62259685 None:intergenic 45.0%
!! GCAGAAGCACCTAAACCAAA+TGG + chr2_4:62259666-62259685 Msa0340870:CDS 45.0%
!! AGAAGGTACTGGTTTCGAGA+TGG - chr2_4:62259718-62259737 None:intergenic 45.0%
CCCTCGATAGACAATGAAGA+AGG - chr2_4:62259735-62259754 None:intergenic 45.0%
AAAAGCTGCAGATGAAGGGT+TGG + chr2_4:62259764-62259783 Msa0340870:CDS 45.0%
!! ACTCTAAAACCAGAGCAGGT+TGG + chr2_4:62259853-62259872 Msa0340870:intron 45.0%
CAGAAGATCTCGGACGATAA+AGG + chr2_4:62259882-62259901 Msa0340870:CDS 45.0%
TGCTCCTCCTTCATGTAATG+AGG + chr2_4:62259912-62259931 Msa0340870:CDS 45.0%
GCCCGAAAAATGAGAAGGAA+AGG - chr2_4:62259950-62259969 None:intergenic 45.0%
! TCTTTCTAGTCTGACGTGTC+CGG + chr2_4:62260260-62260279 Msa0340870:intron 45.0%
! TAGAATCTTGATGACCTCCC+CGG - chr2_4:62260282-62260301 None:intergenic 45.0%
GTGTTTGTGACAGATCCAGT+TGG + chr2_4:62260394-62260413 Msa0340870:intron 45.0%
GTGACAGATCCAGTTGGTTA+TGG + chr2_4:62260400-62260419 Msa0340870:intron 45.0%
AGTGCATCACCATAACCAAC+TGG - chr2_4:62260412-62260431 None:intergenic 45.0%
GCAATATTGCCGTCATTTCC+CGG + chr2_4:62260436-62260455 Msa0340870:CDS 45.0%
TCATTTGGAGGTTGGGCAGA+TGG - chr2_4:62259540-62259559 None:intergenic 50.0%
GATTTCACCTGCGTGTAGTG+AGG + chr2_4:62259577-62259596 Msa0340870:CDS 50.0%
TCAAATCCCTCACTACACGC+AGG - chr2_4:62259587-62259606 None:intergenic 50.0%
ACAGGAGCAGGAATTGAAGG+AGG - chr2_4:62259630-62259649 None:intergenic 50.0%
TGACCGCCCGAAAAATGAGA+AGG - chr2_4:62259955-62259974 None:intergenic 50.0%
! CTTTCTAGTCTGACGTGTCC+GGG + chr2_4:62260261-62260280 Msa0340870:intron 50.0%
! TTTCTAGTCTGACGTGTCCG+GGG + chr2_4:62260262-62260281 Msa0340870:intron 50.0%
! AAGAGAGGATGGCGGTTAGT+TGG + chr2_4:62260301-62260320 Msa0340870:intron 50.0%
TCATTTGGAGGTTGGGCAGA+TGG - chr2_4:62259540-62259559 None:intergenic 50.0%
GATTTCACCTGCGTGTAGTG+AGG + chr2_4:62259577-62259596 Msa0340870:CDS 50.0%
TCAAATCCCTCACTACACGC+AGG - chr2_4:62259587-62259606 None:intergenic 50.0%
ACAGGAGCAGGAATTGAAGG+AGG - chr2_4:62259630-62259649 None:intergenic 50.0%
TGACCGCCCGAAAAATGAGA+AGG - chr2_4:62259955-62259974 None:intergenic 50.0%
! CTTTCTAGTCTGACGTGTCC+GGG + chr2_4:62260261-62260280 Msa0340870:intron 50.0%
! TTTCTAGTCTGACGTGTCCG+GGG + chr2_4:62260262-62260281 Msa0340870:intron 50.0%
! AAGAGAGGATGGCGGTTAGT+TGG + chr2_4:62260301-62260320 Msa0340870:intron 50.0%
CTGAAGATGCCAACCTGCTC+TGG - chr2_4:62259865-62259884 None:intergenic 55.0%
CTGAAGATGCCAACCTGCTC+TGG - chr2_4:62259865-62259884 None:intergenic 55.0%
! TGGTGGGCAGCTACCAGTTG+AGG + chr2_4:62260125-62260144 Msa0340870:CDS 60.0%
! TGGTGGGCAGCTACCAGTTG+AGG + chr2_4:62260125-62260144 Msa0340870:CDS 60.0%
CTAGTCTGACGTGTCCGGGG+AGG + chr2_4:62260265-62260284 Msa0340870:intron 65.0%
CTAGTCTGACGTGTCCGGGG+AGG + chr2_4:62260265-62260284 Msa0340870:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 62259129 62260670 62259129 ID=Msa0340870;Name=Msa0340870
chr2_4 mRNA 62259129 62260670 62259129 ID=Msa0340870-mRNA-1;Parent=Msa0340870;Name=Msa0340870-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.83|0.71|1|0.83|0.71|7|190|208
chr2_4 exon 62259129 62259206 62259129 ID=Msa0340870-mRNA-1:exon:19727;Parent=Msa0340870-mRNA-1
chr2_4 exon 62259376 62259435 62259376 ID=Msa0340870-mRNA-1:exon:19728;Parent=Msa0340870-mRNA-1
chr2_4 exon 62259570 62259806 62259570 ID=Msa0340870-mRNA-1:exon:19729;Parent=Msa0340870-mRNA-1
chr2_4 exon 62259871 62259933 62259871 ID=Msa0340870-mRNA-1:exon:19730;Parent=Msa0340870-mRNA-1
chr2_4 exon 62260078 62260146 62260078 ID=Msa0340870-mRNA-1:exon:19731;Parent=Msa0340870-mRNA-1
chr2_4 exon 62260269 62260314 62260269 ID=Msa0340870-mRNA-1:exon:19732;Parent=Msa0340870-mRNA-1
chr2_4 exon 62260407 62260670 62260407 ID=Msa0340870-mRNA-1:exon:19733;Parent=Msa0340870-mRNA-1
chr2_4 CDS 62259129 62259206 62259129 ID=Msa0340870-mRNA-1:cds;Parent=Msa0340870-mRNA-1
chr2_4 CDS 62259376 62259435 62259376 ID=Msa0340870-mRNA-1:cds;Parent=Msa0340870-mRNA-1
chr2_4 CDS 62259570 62259806 62259570 ID=Msa0340870-mRNA-1:cds;Parent=Msa0340870-mRNA-1
chr2_4 CDS 62259871 62259933 62259871 ID=Msa0340870-mRNA-1:cds;Parent=Msa0340870-mRNA-1
chr2_4 CDS 62260078 62260146 62260078 ID=Msa0340870-mRNA-1:cds;Parent=Msa0340870-mRNA-1
chr2_4 CDS 62260269 62260314 62260269 ID=Msa0340870-mRNA-1:cds;Parent=Msa0340870-mRNA-1
chr2_4 CDS 62260407 62260480 62260407 ID=Msa0340870-mRNA-1:cds;Parent=Msa0340870-mRNA-1
chr2_4 three_prime_UTR 62260481 62260670 62260481 ID=Msa0340870-mRNA-1:three_prime_utr;Parent=Msa0340870-mRNA-1
Gene Sequence

>Msa0340870

GTTTCAAGGTCAGAAGGTGGTTCTGAAGAGATTAAATCTTCTGGTTTGACAAGTGAACTGTTTCCCAATTTTAATGATGTGGAATTCTTGGTCACTAACTTATGTGAGACGGCATCAATTGGAGAGCTAGAATTAAAACTTGATGGATTTCACCTGCGTGTAGTGAGGGATTTGACTGAAAAATCTAAAACACTTCCTCCTTCAATTCCTGCTCCTGTAAGTATAAATACACCCGCAGAAGCACCTAAACCAAATGGATCAGTTTCTACATTGACAACATTGGCCATCTCGAAACCAGTACCTTCTTCATTGTCTATCGAGGGATTCCTAGAAAAAGCTGCAGATGAAGGGTTGGTGATAATTCATTCTCCAACGGTTGGCATCTTCAGAAGATCTCGGACGATAAAGGGAAAACGTGCTCCTCCTTCATGTAATGAGATGCAAAAAGTTGAGGACGGGAAAGTGATTTGTTACATTGAACAGCTTGGTGGGCAGCTACCAGTTGAGTCTGACGTGTCCGGGGAGGTCATCAAGATTCTAAGAGAGGATGGCGATCCAGTTGGTTATGGTGATGCACTTATAGCAATATTGCCGTCATTTCCCGGAATAAAGAAGCTTCAATATTGA

Protein sequence

>Msa0340870

VSRSEGGSEEIKSSGLTSELFPNFNDVEFLVTNLCETASIGELELKLDGFHLRVVRDLTEKSKTLPPSIPAPVSINTPAEAPKPNGSVSTLTTLAISKPVPSSLSIEGFLEKAADEGLVIIHSPTVGIFRRSRTIKGKRAPPSCNEMQKVEDGKVICYIEQLGGQLPVESDVSGEVIKILREDGDPVGYGDALIAILPSFPGIKKLQY*