AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0725780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0725780 MtrunA17_Chr5g0417521 87.819 353 42 1 1 352 1 353 0.0 610
Msa0725780 MtrunA17_Chr4g0042451 59.143 350 127 5 2 349 4 339 3.63e-128 370
Msa0725780 MtrunA17_Chr2g0321461 51.020 245 102 5 8 244 38 272 3.00e-70 224
Msa0725780 MtrunA17_Chr6g0461641 49.565 230 109 3 8 233 35 261 5.14e-64 208
Msa0725780 MtrunA17_Chr8g0356501 54.777 157 62 1 8 164 30 177 5.08e-49 168
Msa0725780 MtrunA17_Chr5g0409731 44.865 185 94 4 5 186 15 194 3.51e-46 159
Msa0725780 MtrunA17_Chr2g0310011 52.174 161 68 3 8 168 28 179 1.88e-45 158
Msa0725780 MtrunA17_Chr2g0290991 41.949 236 116 7 8 230 32 259 2.17e-42 149
Msa0725780 MtrunA17_Chr7g0254981 50.345 145 63 2 14 158 49 184 6.42e-42 147
Msa0725780 MtrunA17_Chr1g0197171 49.296 142 69 1 8 149 37 175 3.70e-39 140
Msa0725780 MtrunA17_Chr2g0291021 47.742 155 70 3 15 169 49 192 7.88e-38 138
Msa0725780 MtrunA17_Chr7g0261911 43.537 147 67 3 11 155 258 390 8.36e-36 135
Msa0725780 MtrunA17_Chr1g0190301 43.750 160 72 5 11 168 171 314 3.66e-35 132
Msa0725780 MtrunA17_Chr7g0274471 37.234 188 94 3 15 200 218 383 4.63e-35 133
Msa0725780 MtrunA17_Chr1g0175091 40.940 149 74 2 11 159 254 388 3.17e-32 125
Msa0725780 MtrunA17_Chr7g0258551 35.849 159 85 2 14 170 211 354 4.93e-30 118
Msa0725780 MtrunA17_Chr7g0242521 37.086 151 67 3 11 152 9 140 1.09e-24 100
Msa0725780 MtrunA17_Chr1g0175071 38.255 149 73 2 8 153 170 302 5.92e-23 97.8
Msa0725780 MtrunA17_Chr1g0175081 49.180 61 31 0 11 71 18 78 7.52e-19 80.9
Msa0725780 MtrunA17_Chr1g0210911 47.778 90 37 3 16 100 23 107 1.59e-17 82.4
Msa0725780 MtrunA17_Chr3g0095611 45.556 90 46 2 15 101 19 108 2.28e-17 79.7
Msa0725780 MtrunA17_Chr1g0162931 50.000 76 35 1 16 88 19 94 6.28e-17 80.1
Msa0725780 MtrunA17_Chr7g0243081 56.604 53 23 0 16 68 72 124 1.36e-16 80.1
Msa0725780 MtrunA17_Chr4g0009901 58.182 55 22 1 15 69 168 221 4.48e-16 77.4
Msa0725780 MtrunA17_Chr6g0479431 42.045 88 50 1 16 102 203 290 2.00e-15 76.6
Msa0725780 MtrunA17_Chr5g0410741 44.872 78 43 0 16 93 220 297 2.23e-15 76.6
Msa0725780 MtrunA17_Chr4g0009981 59.259 54 21 1 15 68 116 168 2.38e-15 75.1
Msa0725780 MtrunA17_Chr2g0283951 38.710 93 50 3 7 98 83 169 4.81e-15 75.5
Msa0725780 MtrunA17_Chr8g0379121 52.830 53 25 0 16 68 112 164 5.26e-15 75.9
Msa0725780 MtrunA17_Chr2g0320231 52.830 53 25 0 16 68 98 150 8.05e-15 74.7
Msa0725780 MtrunA17_Chr2g0288601 54.000 50 23 0 16 65 72 121 1.29e-14 70.1
Msa0725780 MtrunA17_Chr2g0294911 54.286 70 25 2 11 74 207 275 1.75e-14 74.7
Msa0725780 MtrunA17_Chr8g0366281 45.070 71 39 0 16 86 174 244 2.97e-14 73.2
Msa0725780 MtrunA17_Chr5g0402631 46.512 86 42 2 15 97 214 298 4.05e-14 72.4
Msa0725780 MtrunA17_Chr3g0109981 52.632 57 27 0 16 72 275 331 6.85e-14 72.4
Msa0725780 MtrunA17_Chr4g0009851 55.556 54 23 1 15 68 169 221 8.09e-14 71.2
Msa0725780 MtrunA17_Chr1g0161431 54.237 59 26 1 11 69 196 253 8.11e-14 72.4
Msa0725780 MtrunA17_Chr1g0154261 39.773 88 45 1 16 95 127 214 8.21e-14 71.2
Msa0725780 MtrunA17_Chr4g0045361 55.172 58 26 0 12 69 271 328 9.29e-14 72.0
Msa0725780 MtrunA17_Chr4g0067981 55.932 59 25 1 11 69 211 268 1.10e-13 72.4
Msa0725780 MtrunA17_Chr7g0255711 56.364 55 23 1 15 69 91 144 1.39e-13 70.5
Msa0725780 MtrunA17_Chr2g0304841 52.542 59 27 1 11 69 209 266 1.67e-13 71.6
Msa0725780 MtrunA17_Chr4g0031961 53.448 58 26 1 12 69 128 184 2.14e-13 70.1
Msa0725780 MtrunA17_Chr4g0062921 53.448 58 27 0 12 69 232 289 4.69e-13 69.7
Msa0725780 MtrunA17_Chr1g0198601 60.000 55 22 0 15 69 211 265 5.28e-13 69.3
Msa0725780 MtrunA17_Chr4g0009991 56.250 48 20 1 18 65 70 116 1.16e-12 64.3
Msa0725780 MtrunA17_Chr7g0258531 33.577 137 78 3 15 150 213 337 1.78e-12 67.8
Msa0725780 MtrunA17_Chr7g0275401 53.704 54 24 1 15 68 192 244 6.55e-12 65.5
Msa0725780 MtrunA17_Chr5g0422621 54.545 55 25 0 15 69 198 252 1.84e-11 64.7
Msa0725780 MtrunA17_Chr5g0400241 43.939 66 36 1 17 82 313 377 8.41e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0725780 AT1G69580.1 50.000 266 116 5 6 262 25 282 3.70e-76 238
Msa0725780 AT1G69580.2 49.438 267 117 5 6 262 25 283 5.67e-75 235
Msa0725780 AT3G04030.3 54.077 233 97 4 8 235 38 265 7.24e-69 221
Msa0725780 AT5G18240.1 52.361 233 101 4 8 235 38 265 7.18e-68 219
Msa0725780 AT5G18240.4 52.361 233 101 4 8 235 38 265 7.18e-68 219
Msa0725780 AT3G04030.2 53.219 233 98 5 8 235 38 264 1.04e-65 213
Msa0725780 AT5G18240.5 51.502 233 101 5 8 235 38 263 1.89e-64 210
Msa0725780 AT3G04030.1 51.931 233 96 5 8 235 38 259 6.94e-62 203
Msa0725780 AT5G18240.2 50.215 233 100 5 8 235 38 259 4.23e-61 201
Msa0725780 AT5G18240.3 50.215 233 100 5 8 235 38 259 4.23e-61 201
Msa0725780 AT3G24120.1 45.133 226 116 4 8 226 34 258 1.95e-56 186
Msa0725780 AT4G13640.1 44.872 234 107 6 8 229 30 253 9.11e-56 184
Msa0725780 AT3G24120.2 44.541 229 116 5 8 226 34 261 3.52e-54 180
Msa0725780 AT4G13640.2 44.304 237 107 7 8 229 30 256 1.29e-53 179
Msa0725780 AT1G79430.2 56.051 157 60 3 8 164 27 174 1.67e-50 172
Msa0725780 AT5G45580.1 44.512 164 85 2 9 166 1 164 1.04e-42 149
Msa0725780 AT5G45580.2 44.512 164 85 2 9 166 17 180 1.79e-42 149
Msa0725780 AT3G04030.5 48.969 194 89 4 47 235 1 189 3.00e-41 147
Msa0725780 AT2G01060.1 48.052 154 68 4 14 167 14 155 1.12e-39 142
Msa0725780 AT3G12730.1 48.052 154 72 3 8 159 16 163 1.14e-39 140
Msa0725780 AT3G04450.4 42.568 148 76 2 11 158 194 332 6.75e-35 132
Msa0725780 AT3G04450.2 42.568 148 76 2 11 158 194 332 6.75e-35 132
Msa0725780 AT5G29000.1 43.333 150 66 3 14 158 187 322 8.96e-35 131
Msa0725780 AT5G29000.3 43.333 150 66 3 14 158 187 322 8.96e-35 131
Msa0725780 AT3G04450.1 42.568 148 76 2 11 158 234 372 1.13e-34 132
Msa0725780 AT3G04030.4 46.392 194 88 5 47 235 1 183 1.42e-34 129
Msa0725780 AT5G29000.2 43.333 150 66 3 14 158 230 365 1.49e-34 131
Msa0725780 AT5G18240.6 45.361 194 90 5 47 235 1 183 1.61e-34 129
Msa0725780 AT4G28610.1 41.216 148 76 2 14 161 224 360 5.77e-34 129
Msa0725780 AT5G06800.2 41.667 144 76 2 15 158 192 327 6.72e-32 123
Msa0725780 AT5G06800.1 41.667 144 71 3 15 158 192 322 4.23e-31 121
Msa0725780 AT3G13040.3 43.919 148 66 4 11 153 237 372 9.89e-30 119
Msa0725780 AT3G13040.1 43.919 148 66 4 11 153 237 372 9.89e-30 119
Msa0725780 AT3G13040.2 43.919 148 66 4 11 153 237 372 9.89e-30 119
Msa0725780 AT2G20400.2 41.176 153 69 3 15 162 231 367 5.17e-29 116
Msa0725780 AT2G20400.1 40.523 153 69 3 15 162 231 366 1.45e-28 114
Msa0725780 AT1G79430.1 51.695 118 48 3 47 164 1 109 2.72e-27 109
Msa0725780 AT3G04450.3 57.377 61 26 0 11 71 234 294 7.32e-21 92.0
Msa0725780 AT5G29000.4 56.897 58 25 0 14 71 230 287 1.97e-20 90.9
Msa0725780 AT2G01060.2 44.068 118 54 4 50 167 1 106 5.31e-20 88.2
Msa0725780 AT2G06020.1 54.098 61 28 0 11 71 82 142 2.40e-18 84.7
Msa0725780 AT5G06800.3 56.140 57 25 0 15 71 192 248 4.30e-18 83.6
Msa0725780 AT1G14600.1 58.491 53 22 0 16 68 24 76 1.44e-17 81.6
Msa0725780 AT2G02060.2 52.459 61 29 0 16 76 30 90 8.67e-17 79.3
Msa0725780 AT2G02060.1 52.459 61 29 0 16 76 30 90 8.67e-17 79.3
Msa0725780 AT3G12730.2 41.739 115 59 3 47 159 1 109 9.51e-17 77.8
Msa0725780 AT1G32240.1 44.872 78 43 0 16 93 214 291 7.80e-16 78.6
Msa0725780 AT1G32240.2 44.872 78 43 0 16 93 214 291 8.78e-16 78.2
Msa0725780 AT2G38300.1 56.604 53 23 0 16 68 55 107 1.46e-15 77.0
Msa0725780 AT4G04605.1 52.830 53 25 0 16 68 15 67 1.86e-15 75.1
Msa0725780 AT2G42660.1 50.000 64 29 1 16 79 51 111 5.87e-15 74.3
Msa0725780 AT2G40260.1 50.847 59 29 0 16 74 83 141 9.91e-15 75.1
Msa0725780 AT4G17695.1 45.570 79 37 1 16 88 165 243 1.69e-14 73.9
Msa0725780 AT5G16560.1 52.632 57 27 0 16 72 220 276 2.88e-14 73.9
Msa0725780 AT5G59570.2 53.448 58 26 1 12 69 138 194 3.26e-14 72.8
Msa0725780 AT5G59570.1 53.448 58 26 1 12 69 138 194 3.26e-14 72.8
Msa0725780 AT2G40970.1 55.172 58 25 1 12 69 102 158 6.08e-14 71.2
Msa0725780 AT5G05090.1 56.364 55 23 1 15 69 81 134 6.21e-14 71.6
Msa0725780 AT5G42630.2 51.786 56 27 0 16 71 106 161 7.71e-14 70.5
Msa0725780 AT3G10760.1 56.364 55 23 1 15 69 105 158 7.84e-14 72.0
Msa0725780 AT3G16857.3 56.364 55 23 1 15 69 167 220 1.01e-13 72.8
Msa0725780 AT3G16857.2 56.364 55 23 1 15 69 237 290 1.16e-13 72.8
Msa0725780 AT3G16857.1 56.364 55 23 1 15 69 237 290 1.20e-13 72.4
Msa0725780 AT5G42630.1 51.786 56 27 0 16 71 106 161 1.22e-13 70.9
Msa0725780 AT3G46640.2 54.545 55 24 1 15 69 144 197 1.23e-13 71.2
Msa0725780 AT3G46640.1 54.545 55 24 1 15 69 144 197 1.23e-13 71.2
Msa0725780 AT3G46640.3 54.545 55 24 1 15 69 144 197 1.42e-13 71.2
Msa0725780 AT1G25550.1 55.172 58 26 0 12 69 206 263 3.36e-13 70.1
Msa0725780 AT1G49560.1 60.000 55 22 0 15 69 192 246 3.63e-13 70.1
Msa0725780 AT1G68670.1 56.897 58 25 0 12 69 212 269 6.31e-13 69.3
Msa0725780 AT3G25790.1 49.206 63 32 0 20 82 201 263 6.59e-13 69.3
Msa0725780 AT4G04580.1 45.588 68 36 1 1 68 1 67 1.35e-12 65.5
Msa0725780 AT2G03500.1 51.724 58 28 0 12 69 230 287 2.71e-12 67.8
Msa0725780 AT4G37180.1 52.830 53 25 0 17 69 212 264 3.08e-12 67.4
Msa0725780 AT4G37180.2 52.830 53 25 0 17 69 219 271 3.49e-12 67.4
Msa0725780 AT5G45580.3 34.545 110 66 2 63 166 16 125 6.71e-12 65.1
Msa0725780 AT5G58080.1 54.237 59 26 1 11 69 190 247 8.82e-12 66.6
Msa0725780 AT2G01760.3 50.909 55 26 1 15 69 135 188 9.16e-12 65.9
Msa0725780 AT2G01760.1 50.909 55 26 1 15 69 200 253 1.42e-11 65.5
Msa0725780 AT1G67710.3 45.588 68 32 1 17 79 121 188 1.73e-11 65.5
Msa0725780 AT2G01760.2 50.909 55 26 1 15 69 228 281 1.96e-11 65.1
Msa0725780 AT1G13300.1 46.269 67 36 0 15 81 181 247 2.28e-11 64.7
Msa0725780 AT1G67710.1 45.588 68 32 1 17 79 195 262 2.30e-11 65.5
Msa0725780 AT1G67710.2 45.588 68 32 1 17 79 130 197 2.57e-11 65.1
Msa0725780 AT3G62670.1 46.774 62 29 1 11 68 207 268 4.92e-11 63.9
Msa0725780 AT5G44190.1 50.000 54 26 1 15 68 147 199 5.27e-11 63.9
Msa0725780 AT5G44190.2 50.000 54 26 1 15 68 147 199 6.72e-11 63.2
Msa0725780 AT1G49560.2 50.000 64 30 1 15 78 192 253 8.97e-11 62.0

Find 73 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGATTTGCATCAATATTA+TGG 0.263621 5_1:+25621534 None:intergenic
ATTACTCAGTGATTTGATTC+TGG 0.268350 5_1:+25620739 None:intergenic
TACTTTGATTCTGCATGTTT+TGG 0.275597 5_1:+25621506 None:intergenic
AATATTGATGCAAATCTAAA+AGG 0.293329 5_1:-25621530 Msa0725780:five_prime_UTR
TGGAACTTCTTTGTGTTCAT+TGG 0.299674 5_1:-25620049 Msa0725780:CDS
TTCACTTGAATTGCCACTAA+TGG 0.314380 5_1:-25619938 Msa0725780:CDS
CAGAGTAGGTTTCTAGTTGT+TGG 0.316123 5_1:+25621076 None:intergenic
AAAATGGGAATACCTGTAAA+TGG 0.318364 5_1:+25621198 None:intergenic
TAATTGCATCAATGAATCTT+TGG 0.326033 5_1:+25621425 None:intergenic
AAACATTCAATAGAAGAAAT+AGG 0.327972 5_1:-25619985 Msa0725780:CDS
ATCACCCTCATAATACTCTT+TGG 0.337237 5_1:+25621257 None:intergenic
AGTCCTTGTCATTCTGATAT+TGG 0.344487 5_1:+25619710 None:intergenic
CTATGATCTCACTTCATATC+AGG 0.348012 5_1:+25621602 None:intergenic
ATGAATCTTTGGTGAAGTTC+AGG 0.353886 5_1:+25621436 None:intergenic
CCATCTCAAGAGCCATTTAC+AGG 0.357774 5_1:-25621210 Msa0725780:intron
AATGAAGAAACTAAATTTGA+TGG 0.358160 5_1:-25619820 Msa0725780:CDS
AATTATATAAACCATCTTCA+TGG 0.364378 5_1:+25619634 None:intergenic
ATGCAAAACCAAGGCTCAAA+TGG 0.392729 5_1:-25621462 Msa0725780:CDS
GCATTGTTCATCACAGCTCT+TGG 0.396519 5_1:+25620785 None:intergenic
AGTAGGTATGAAATGGCTTA+TGG 0.402721 5_1:-25621659 Msa0725780:five_prime_UTR
AAGGCGCAGGAGGCCCTCTC+TGG 0.408389 5_1:-25620225 Msa0725780:CDS
GGATACAATTCTTCACCAAT+TGG 0.409885 5_1:-25620204 Msa0725780:CDS
TTGTTCTTTGTTGTCAGAGT+AGG 0.427163 5_1:+25621062 None:intergenic
AAAAGACGAACTGTCTCAAT+TGG 0.442895 5_1:-25620169 Msa0725780:CDS
GCAGCAGAGAAATCAGTCTT+GGG 0.443255 5_1:-25620764 Msa0725780:CDS
GATTCTGTTAGATCTGAGAT+TGG 0.449789 5_1:+25620114 None:intergenic
TCTGAGTGCATGGCCATTAG+TGG 0.458598 5_1:+25619925 None:intergenic
AAACTATGAGGAGAGGAAAC+AGG 0.459208 5_1:-25620076 Msa0725780:CDS
TCAGGAGTCCATTTGAGCCT+TGG 0.464509 5_1:+25621454 None:intergenic
TGCAGCAGAGAAATCAGTCT+TGG 0.471008 5_1:-25620765 Msa0725780:CDS
ATGAGGGTGATGGAAATTCC+AGG 0.471652 5_1:-25621245 Msa0725780:CDS
ATTGATGCAATTAATCAACT+TGG 0.481050 5_1:-25621415 Msa0725780:CDS
ATCTTCTGAAATCTCAGAAA+GGG 0.484544 5_1:-25620013 Msa0725780:CDS
AGATCTGAGATTGGAGAACT+TGG 0.485427 5_1:+25620123 None:intergenic
CAACACCAAAGAGTATTATG+AGG 0.491136 5_1:-25621262 Msa0725780:CDS
CATTAGTGGGGTTATGTTGG+AGG 0.495407 5_1:+25621628 None:intergenic
CATCTTCTGAAATCTCAGAA+AGG 0.495942 5_1:-25620014 Msa0725780:CDS
TTTACAATCGGTACTAATGA+AGG 0.497419 5_1:-25620244 Msa0725780:CDS
AAACATTAGTGGGGTTATGT+TGG 0.503401 5_1:+25621625 None:intergenic
TTCATATCAGGAAACATTAG+TGG 0.509137 5_1:+25621614 None:intergenic
ATTTAAGTAATGAAGTCAAT+GGG 0.515023 5_1:-25619852 Msa0725780:CDS
AATTTAAGTAATGAAGTCAA+TGG 0.515931 5_1:-25619853 Msa0725780:CDS
TCAAGGAAAATATTTACAAT+CGG 0.522599 5_1:-25620256 Msa0725780:CDS
AGATGGTACAAAGTAAGTCC+TGG 0.523577 5_1:+25621227 None:intergenic
GAAACTTAATGAACAAATTG+AGG 0.524227 5_1:-25620562 Msa0725780:intron
GATGCAATTAATCAACTTGG+AGG 0.524466 5_1:-25621412 Msa0725780:CDS
AAATGCAAGTGGAAGTAGAA+AGG 0.528516 5_1:-25620584 Msa0725780:CDS
TGATTTCTCTTCTGAGTGCA+TGG 0.534501 5_1:+25619915 None:intergenic
TCATATCAGGAAACATTAGT+GGG 0.542603 5_1:+25621615 None:intergenic
CGAAGCACAGACACAGACAT+TGG 0.544995 5_1:+25619883 None:intergenic
CCTGTAAATGGCTCTTGAGA+TGG 0.548306 5_1:+25621210 None:intergenic
ATTTGCATCAATATTATGGA+AGG 0.552271 5_1:+25621538 None:intergenic
AAAGAGTATTATGAGGGTGA+TGG 0.553041 5_1:-25621255 Msa0725780:CDS
AGGGTTAAGTTTAAACTATG+AGG 0.556660 5_1:-25620088 Msa0725780:CDS
CAGCTTCGAATCGAAGCTCA+AGG 0.569311 5_1:-25620273 Msa0725780:CDS
TAAGTTTAAACTATGAGGAG+AGG 0.577698 5_1:-25620083 Msa0725780:CDS
TCATGCTCTAGAAATGCAAG+TGG 0.579389 5_1:-25620595 Msa0725780:CDS
ATCGGTACTAATGAAGGCGC+AGG 0.585210 5_1:-25620238 Msa0725780:CDS
GGGGTGAAGAGAATCTATGA+TGG 0.595666 5_1:+25621751 None:intergenic
GGTTGTAGAAATATAGACTT+GGG 0.601442 5_1:-25621104 Msa0725780:intron
GTGAAGAATTGTATCCAGAG+AGG 0.609917 5_1:+25620211 None:intergenic
TGGTTGTAGAAATATAGACT+TGG 0.620704 5_1:-25621105 Msa0725780:intron
TCAGATCTAACAGAATCAAG+AGG 0.622910 5_1:-25620108 Msa0725780:CDS
AACACCAAAGAGTATTATGA+GGG 0.627296 5_1:-25621261 Msa0725780:CDS
TGAAGAATTGTATCCAGAGA+GGG 0.628116 5_1:+25620212 None:intergenic
TACTCTGACAACAAAGAACA+AGG 0.633344 5_1:-25621060 Msa0725780:intron
CAGATCTAACAGAATCAAGA+GGG 0.636389 5_1:-25620107 Msa0725780:CDS
GAGGAGAGGAAACAGGACAA+TGG 0.639420 5_1:-25620069 Msa0725780:CDS
GGTACTAATGAAGGCGCAGG+AGG 0.653630 5_1:-25620235 Msa0725780:CDS
CAGCAGAGAAATCAGTCTTG+GGG 0.657853 5_1:-25620763 Msa0725780:CDS
CATATCAGGAAACATTAGTG+GGG 0.706486 5_1:+25621616 None:intergenic
TAGCCAATATCAGAATGACA+AGG 0.715504 5_1:-25619713 Msa0725780:CDS
TATCCACTGATGCAAAACCA+AGG 0.720964 5_1:-25621471 Msa0725780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATGAAAAAAAATAGTA+AGG + chr5_1:25620021-25620040 None:intergenic 10.0%
!! AAATATGAAAAAAAATAGTA+AGG + chr5_1:25620021-25620040 None:intergenic 10.0%
!! AGAAGAAAAAAAAAAAAAGT+AGG - chr5_1:25619696-25619715 Msa0725780:CDS 15.0%
!! TACAATATCATTACAAAAAT+GGG + chr5_1:25620192-25620211 None:intergenic 15.0%
!! TTACAATATCATTACAAAAA+TGG + chr5_1:25620193-25620212 None:intergenic 15.0%
!!! GTAATGATATTGTAATTTTT+TGG - chr5_1:25620198-25620217 Msa0725780:CDS 15.0%
!!! AAAATAATTTTAGATTGAAC+TGG - chr5_1:25620698-25620717 Msa0725780:intron 15.0%
!!! TTTTTTTTTTACCAAAATCA+CGG + chr5_1:25620942-25620961 None:intergenic 15.0%
!! AATTATTCATTAAGAAAAAG+AGG - chr5_1:25621588-25621607 Msa0725780:five_prime_UTR 15.0%
!! AGAAGAAAAAAAAAAAAAGT+AGG - chr5_1:25619696-25619715 Msa0725780:CDS 15.0%
!! TACAATATCATTACAAAAAT+GGG + chr5_1:25620192-25620211 None:intergenic 15.0%
!! TTACAATATCATTACAAAAA+TGG + chr5_1:25620193-25620212 None:intergenic 15.0%
!!! GTAATGATATTGTAATTTTT+TGG - chr5_1:25620198-25620217 Msa0725780:CDS 15.0%
!!! AAAATAATTTTAGATTGAAC+TGG - chr5_1:25620698-25620717 Msa0725780:intron 15.0%
!!! TTTTTTTTTTACCAAAATCA+CGG + chr5_1:25620942-25620961 None:intergenic 15.0%
!! AATTATTCATTAAGAAAAAG+AGG - chr5_1:25621588-25621607 Msa0725780:five_prime_UTR 15.0%
!!! TTTTTTCTTTGACTTAAATG+GGG + chr5_1:25619643-25619662 None:intergenic 20.0%
!!! CTTTTTTCTTTGACTTAAAT+GGG + chr5_1:25619644-25619663 None:intergenic 20.0%
!!! ACTTTTTTCTTTGACTTAAA+TGG + chr5_1:25619645-25619664 None:intergenic 20.0%
!! AAAAAAAAGTAGGTATGAAA+TGG - chr5_1:25619706-25619725 Msa0725780:CDS 20.0%
!! TTAGATTTGCATCAATATTA+TGG + chr5_1:25619841-25619860 None:intergenic 20.0%
!! AATATTGATGCAAATCTAAA+AGG - chr5_1:25619842-25619861 Msa0725780:CDS 20.0%
!! AATCCAAATGATTGATTATT+TGG - chr5_1:25620524-25620543 Msa0725780:intron 20.0%
!! TCAAGGAAAATATTTACAAT+CGG - chr5_1:25621116-25621135 Msa0725780:intron 20.0%
!! AAACATTCAATAGAAGAAAT+AGG - chr5_1:25621387-25621406 Msa0725780:intron 20.0%
!! AATTTAAGTAATGAAGTCAA+TGG - chr5_1:25621519-25621538 Msa0725780:exon 20.0%
!! ATTTAAGTAATGAAGTCAAT+GGG - chr5_1:25621520-25621539 Msa0725780:exon 20.0%
!! AATGAAGAAACTAAATTTGA+TGG - chr5_1:25621552-25621571 Msa0725780:five_prime_UTR 20.0%
!! AATTATATAAACCATCTTCA+TGG + chr5_1:25621741-25621760 None:intergenic 20.0%
!!! TTTTTTCTTTGACTTAAATG+GGG + chr5_1:25619643-25619662 None:intergenic 20.0%
!!! CTTTTTTCTTTGACTTAAAT+GGG + chr5_1:25619644-25619663 None:intergenic 20.0%
!!! ACTTTTTTCTTTGACTTAAA+TGG + chr5_1:25619645-25619664 None:intergenic 20.0%
!! AAAAAAAAGTAGGTATGAAA+TGG - chr5_1:25619706-25619725 Msa0725780:CDS 20.0%
!! TTAGATTTGCATCAATATTA+TGG + chr5_1:25619841-25619860 None:intergenic 20.0%
!! AATATTGATGCAAATCTAAA+AGG - chr5_1:25619842-25619861 Msa0725780:CDS 20.0%
!! AATCCAAATGATTGATTATT+TGG - chr5_1:25620524-25620543 Msa0725780:intron 20.0%
!! TCAAGGAAAATATTTACAAT+CGG - chr5_1:25621116-25621135 Msa0725780:intron 20.0%
!! AAACATTCAATAGAAGAAAT+AGG - chr5_1:25621387-25621406 Msa0725780:intron 20.0%
!! AATTTAAGTAATGAAGTCAA+TGG - chr5_1:25621519-25621538 Msa0725780:exon 20.0%
!! ATTTAAGTAATGAAGTCAAT+GGG - chr5_1:25621520-25621539 Msa0725780:exon 20.0%
!! AATGAAGAAACTAAATTTGA+TGG - chr5_1:25621552-25621571 Msa0725780:five_prime_UTR 20.0%
!! AATTATATAAACCATCTTCA+TGG + chr5_1:25621741-25621760 None:intergenic 20.0%
! ATTTGCATCAATATTATGGA+AGG + chr5_1:25619837-25619856 None:intergenic 25.0%
! TAATTGCATCAATGAATCTT+TGG + chr5_1:25619950-25619969 None:intergenic 25.0%
! ATTGATGCAATTAATCAACT+TGG - chr5_1:25619957-25619976 Msa0725780:CDS 25.0%
! TCAAATTGTGTATGTTAATG+TGG - chr5_1:25620081-25620100 Msa0725780:CDS 25.0%
!!! GACTTTTCATGTTTTTTTAC+TGG - chr5_1:25620247-25620266 Msa0725780:CDS 25.0%
! CCGATAATTTAAAAATCAGA+CGG + chr5_1:25620468-25620487 None:intergenic 25.0%
!! CCGTCTGATTTTTAAATTAT+CGG - chr5_1:25620465-25620484 Msa0725780:intron 25.0%
! ATGCCAAATAATCAATCATT+TGG + chr5_1:25620530-25620549 None:intergenic 25.0%
! ATTATTTGGCATAACATTGA+TGG - chr5_1:25620538-25620557 Msa0725780:intron 25.0%
! GAAACTTAATGAACAAATTG+AGG - chr5_1:25620810-25620829 Msa0725780:intron 25.0%
! ATGTATATGTGATGAAATCA+CGG + chr5_1:25620998-25621017 None:intergenic 25.0%
!!! TTTGTCAGTTTTATTCCAAT+TGG + chr5_1:25621186-25621205 None:intergenic 25.0%
! TATTCATTAAGAAAAAGAGG+TGG - chr5_1:25621591-25621610 Msa0725780:five_prime_UTR 25.0%
! ATTTGCATCAATATTATGGA+AGG + chr5_1:25619837-25619856 None:intergenic 25.0%
! TAATTGCATCAATGAATCTT+TGG + chr5_1:25619950-25619969 None:intergenic 25.0%
! ATTGATGCAATTAATCAACT+TGG - chr5_1:25619957-25619976 Msa0725780:CDS 25.0%
! TCAAATTGTGTATGTTAATG+TGG - chr5_1:25620081-25620100 Msa0725780:CDS 25.0%
!!! GACTTTTCATGTTTTTTTAC+TGG - chr5_1:25620247-25620266 Msa0725780:CDS 25.0%
! CCGATAATTTAAAAATCAGA+CGG + chr5_1:25620468-25620487 None:intergenic 25.0%
!! CCGTCTGATTTTTAAATTAT+CGG - chr5_1:25620465-25620484 Msa0725780:intron 25.0%
! ATGCCAAATAATCAATCATT+TGG + chr5_1:25620530-25620549 None:intergenic 25.0%
! ATTATTTGGCATAACATTGA+TGG - chr5_1:25620538-25620557 Msa0725780:intron 25.0%
! GAAACTTAATGAACAAATTG+AGG - chr5_1:25620810-25620829 Msa0725780:intron 25.0%
! ATGTATATGTGATGAAATCA+CGG + chr5_1:25620998-25621017 None:intergenic 25.0%
!!! TTTGTCAGTTTTATTCCAAT+TGG + chr5_1:25621186-25621205 None:intergenic 25.0%
! TATTCATTAAGAAAAAGAGG+TGG - chr5_1:25621591-25621610 Msa0725780:five_prime_UTR 25.0%
!! GCTCAATTTTGAGTCTTAAA+AGG + chr5_1:25619577-25619596 None:intergenic 30.0%
! GTCAAAGAAAAAAGTGTAGA+AGG - chr5_1:25619650-25619669 Msa0725780:exon 30.0%
TCATATCAGGAAACATTAGT+GGG + chr5_1:25619760-25619779 None:intergenic 30.0%
TTCATATCAGGAAACATTAG+TGG + chr5_1:25619761-25619780 None:intergenic 30.0%
! TACTTTGATTCTGCATGTTT+TGG + chr5_1:25619869-25619888 None:intergenic 30.0%
!! AACACCAAAGAGTATTATGA+GGG - chr5_1:25620111-25620130 Msa0725780:CDS 30.0%
AAAATGGGAATACCTGTAAA+TGG + chr5_1:25620177-25620196 None:intergenic 30.0%
TGGTTGTAGAAATATAGACT+TGG - chr5_1:25620267-25620286 Msa0725780:CDS 30.0%
GGTTGTAGAAATATAGACTT+GGG - chr5_1:25620268-25620287 Msa0725780:CDS 30.0%
ATTACTCAGTGATTTGATTC+TGG + chr5_1:25620636-25620655 None:intergenic 30.0%
! TCTAACTTCCAAGTACATTT+TGG - chr5_1:25620881-25620900 Msa0725780:intron 30.0%
TGCAACATTTAGTGCATATT+TGG + chr5_1:25621028-25621047 None:intergenic 30.0%
TATGCACTAAATGTTGCATA+AGG - chr5_1:25621030-25621049 Msa0725780:intron 30.0%
TAAGGACGTGTTAATCAATT+TGG - chr5_1:25621048-25621067 Msa0725780:intron 30.0%
TCAATTTGGTTGTTCATTTC+AGG - chr5_1:25621062-25621081 Msa0725780:CDS 30.0%
TTTACAATCGGTACTAATGA+AGG - chr5_1:25621128-25621147 Msa0725780:intron 30.0%
AGGGTTAAGTTTAAACTATG+AGG - chr5_1:25621284-25621303 Msa0725780:intron 30.0%
TAAGTTTAAACTATGAGGAG+AGG - chr5_1:25621289-25621308 Msa0725780:intron 30.0%
!! ATCTTCTGAAATCTCAGAAA+GGG - chr5_1:25621359-25621378 Msa0725780:intron 30.0%
!! GCTCAATTTTGAGTCTTAAA+AGG + chr5_1:25619577-25619596 None:intergenic 30.0%
! GTCAAAGAAAAAAGTGTAGA+AGG - chr5_1:25619650-25619669 Msa0725780:exon 30.0%
TCATATCAGGAAACATTAGT+GGG + chr5_1:25619760-25619779 None:intergenic 30.0%
TTCATATCAGGAAACATTAG+TGG + chr5_1:25619761-25619780 None:intergenic 30.0%
! TACTTTGATTCTGCATGTTT+TGG + chr5_1:25619869-25619888 None:intergenic 30.0%
!! AACACCAAAGAGTATTATGA+GGG - chr5_1:25620111-25620130 Msa0725780:CDS 30.0%
AAAATGGGAATACCTGTAAA+TGG + chr5_1:25620177-25620196 None:intergenic 30.0%
TGGTTGTAGAAATATAGACT+TGG - chr5_1:25620267-25620286 Msa0725780:CDS 30.0%
GGTTGTAGAAATATAGACTT+GGG - chr5_1:25620268-25620287 Msa0725780:CDS 30.0%
ATTACTCAGTGATTTGATTC+TGG + chr5_1:25620636-25620655 None:intergenic 30.0%
! TCTAACTTCCAAGTACATTT+TGG - chr5_1:25620881-25620900 Msa0725780:intron 30.0%
TGCAACATTTAGTGCATATT+TGG + chr5_1:25621028-25621047 None:intergenic 30.0%
TATGCACTAAATGTTGCATA+AGG - chr5_1:25621030-25621049 Msa0725780:intron 30.0%
TAAGGACGTGTTAATCAATT+TGG - chr5_1:25621048-25621067 Msa0725780:intron 30.0%
TCAATTTGGTTGTTCATTTC+AGG - chr5_1:25621062-25621081 Msa0725780:CDS 30.0%
TTTACAATCGGTACTAATGA+AGG - chr5_1:25621128-25621147 Msa0725780:intron 30.0%
AGGGTTAAGTTTAAACTATG+AGG - chr5_1:25621284-25621303 Msa0725780:intron 30.0%
TAAGTTTAAACTATGAGGAG+AGG - chr5_1:25621289-25621308 Msa0725780:intron 30.0%
!! ATCTTCTGAAATCTCAGAAA+GGG - chr5_1:25621359-25621378 Msa0725780:intron 30.0%
AGTAGGTATGAAATGGCTTA+TGG - chr5_1:25619713-25619732 Msa0725780:CDS 35.0%
AAACATTAGTGGGGTTATGT+TGG + chr5_1:25619750-25619769 None:intergenic 35.0%
CATATCAGGAAACATTAGTG+GGG + chr5_1:25619759-25619778 None:intergenic 35.0%
CTATGATCTCACTTCATATC+AGG + chr5_1:25619773-25619792 None:intergenic 35.0%
ATGAATCTTTGGTGAAGTTC+AGG + chr5_1:25619939-25619958 None:intergenic 35.0%
GATGCAATTAATCAACTTGG+AGG - chr5_1:25619960-25619979 Msa0725780:CDS 35.0%
!! CAACACCAAAGAGTATTATG+AGG - chr5_1:25620110-25620129 Msa0725780:CDS 35.0%
ATCACCCTCATAATACTCTT+TGG + chr5_1:25620118-25620137 None:intergenic 35.0%
!! AAAGAGTATTATGAGGGTGA+TGG - chr5_1:25620117-25620136 Msa0725780:CDS 35.0%
! TTGTTCTTTGTTGTCAGAGT+AGG + chr5_1:25620313-25620332 None:intergenic 35.0%
TACTCTGACAACAAAGAACA+AGG - chr5_1:25620312-25620331 Msa0725780:intron 35.0%
ACCATCTCGTATCAAAATAG+TGG - chr5_1:25620395-25620414 Msa0725780:intron 35.0%
!!! ACCACTATTTTGATACGAGA+TGG + chr5_1:25620399-25620418 None:intergenic 35.0%
!! CATAACATTGATGGTCCTTT+TGG - chr5_1:25620547-25620566 Msa0725780:intron 35.0%
!!! TTCTGTTTTTGCCAGAAACA+TGG - chr5_1:25620747-25620766 Msa0725780:CDS 35.0%
ATGAGATATCTCCATGTTTC+TGG + chr5_1:25620761-25620780 None:intergenic 35.0%
AAATGCAAGTGGAAGTAGAA+AGG - chr5_1:25620788-25620807 Msa0725780:CDS 35.0%
! CTTCCAAGTACATTTTGGAT+TGG - chr5_1:25620886-25620905 Msa0725780:intron 35.0%
TATATGTGATGAAATCACGG+TGG + chr5_1:25620995-25621014 None:intergenic 35.0%
TGAAGAATTGTATCCAGAGA+GGG + chr5_1:25621163-25621182 None:intergenic 35.0%
GGATACAATTCTTCACCAAT+TGG - chr5_1:25621168-25621187 Msa0725780:intron 35.0%
AAAAGACGAACTGTCTCAAT+TGG - chr5_1:25621203-25621222 Msa0725780:intron 35.0%
! GATTCTGTTAGATCTGAGAT+TGG + chr5_1:25621261-25621280 None:intergenic 35.0%
TCAGATCTAACAGAATCAAG+AGG - chr5_1:25621264-25621283 Msa0725780:CDS 35.0%
CAGATCTAACAGAATCAAGA+GGG - chr5_1:25621265-25621284 Msa0725780:CDS 35.0%
TGGAACTTCTTTGTGTTCAT+TGG - chr5_1:25621323-25621342 Msa0725780:intron 35.0%
!! CATCTTCTGAAATCTCAGAA+AGG - chr5_1:25621358-25621377 Msa0725780:intron 35.0%
TTCACTTGAATTGCCACTAA+TGG - chr5_1:25621434-25621453 Msa0725780:CDS 35.0%
TAGCCAATATCAGAATGACA+AGG - chr5_1:25621659-25621678 Msa0725780:five_prime_UTR 35.0%
AGTCCTTGTCATTCTGATAT+TGG + chr5_1:25621665-25621684 None:intergenic 35.0%
! ACTTTTGTGAACCATGAAGA+TGG - chr5_1:25621727-25621746 Msa0725780:five_prime_UTR 35.0%
AGTAGGTATGAAATGGCTTA+TGG - chr5_1:25619713-25619732 Msa0725780:CDS 35.0%
AAACATTAGTGGGGTTATGT+TGG + chr5_1:25619750-25619769 None:intergenic 35.0%
CATATCAGGAAACATTAGTG+GGG + chr5_1:25619759-25619778 None:intergenic 35.0%
CTATGATCTCACTTCATATC+AGG + chr5_1:25619773-25619792 None:intergenic 35.0%
ATGAATCTTTGGTGAAGTTC+AGG + chr5_1:25619939-25619958 None:intergenic 35.0%
GATGCAATTAATCAACTTGG+AGG - chr5_1:25619960-25619979 Msa0725780:CDS 35.0%
!! CAACACCAAAGAGTATTATG+AGG - chr5_1:25620110-25620129 Msa0725780:CDS 35.0%
ATCACCCTCATAATACTCTT+TGG + chr5_1:25620118-25620137 None:intergenic 35.0%
!! AAAGAGTATTATGAGGGTGA+TGG - chr5_1:25620117-25620136 Msa0725780:CDS 35.0%
! TTGTTCTTTGTTGTCAGAGT+AGG + chr5_1:25620313-25620332 None:intergenic 35.0%
TACTCTGACAACAAAGAACA+AGG - chr5_1:25620312-25620331 Msa0725780:intron 35.0%
ACCATCTCGTATCAAAATAG+TGG - chr5_1:25620395-25620414 Msa0725780:intron 35.0%
!!! ACCACTATTTTGATACGAGA+TGG + chr5_1:25620399-25620418 None:intergenic 35.0%
!! CATAACATTGATGGTCCTTT+TGG - chr5_1:25620547-25620566 Msa0725780:intron 35.0%
!!! TTCTGTTTTTGCCAGAAACA+TGG - chr5_1:25620747-25620766 Msa0725780:CDS 35.0%
ATGAGATATCTCCATGTTTC+TGG + chr5_1:25620761-25620780 None:intergenic 35.0%
AAATGCAAGTGGAAGTAGAA+AGG - chr5_1:25620788-25620807 Msa0725780:CDS 35.0%
! CTTCCAAGTACATTTTGGAT+TGG - chr5_1:25620886-25620905 Msa0725780:intron 35.0%
TATATGTGATGAAATCACGG+TGG + chr5_1:25620995-25621014 None:intergenic 35.0%
TGAAGAATTGTATCCAGAGA+GGG + chr5_1:25621163-25621182 None:intergenic 35.0%
GGATACAATTCTTCACCAAT+TGG - chr5_1:25621168-25621187 Msa0725780:intron 35.0%
AAAAGACGAACTGTCTCAAT+TGG - chr5_1:25621203-25621222 Msa0725780:intron 35.0%
! GATTCTGTTAGATCTGAGAT+TGG + chr5_1:25621261-25621280 None:intergenic 35.0%
TCAGATCTAACAGAATCAAG+AGG - chr5_1:25621264-25621283 Msa0725780:CDS 35.0%
CAGATCTAACAGAATCAAGA+GGG - chr5_1:25621265-25621284 Msa0725780:CDS 35.0%
TGGAACTTCTTTGTGTTCAT+TGG - chr5_1:25621323-25621342 Msa0725780:intron 35.0%
!! CATCTTCTGAAATCTCAGAA+AGG - chr5_1:25621358-25621377 Msa0725780:intron 35.0%
TTCACTTGAATTGCCACTAA+TGG - chr5_1:25621434-25621453 Msa0725780:CDS 35.0%
TAGCCAATATCAGAATGACA+AGG - chr5_1:25621659-25621678 Msa0725780:five_prime_UTR 35.0%
AGTCCTTGTCATTCTGATAT+TGG + chr5_1:25621665-25621684 None:intergenic 35.0%
! ACTTTTGTGAACCATGAAGA+TGG - chr5_1:25621727-25621746 Msa0725780:five_prime_UTR 35.0%
TATCCACTGATGCAAAACCA+AGG - chr5_1:25619901-25619920 Msa0725780:CDS 40.0%
ATGCAAAACCAAGGCTCAAA+TGG - chr5_1:25619910-25619929 Msa0725780:CDS 40.0%
AGATGGTACAAAGTAAGTCC+TGG + chr5_1:25620148-25620167 None:intergenic 40.0%
!! CAGAGTAGGTTTCTAGTTGT+TGG + chr5_1:25620299-25620318 None:intergenic 40.0%
! AGAACAAGGTGATGACTTGT+AGG - chr5_1:25620326-25620345 Msa0725780:intron 40.0%
! GAACAAGGTGATGACTTGTA+GGG - chr5_1:25620327-25620346 Msa0725780:intron 40.0%
!! TCATGCTCTAGAAATGCAAG+TGG - chr5_1:25620777-25620796 Msa0725780:CDS 40.0%
!! CCAAGTACATTTTGGATTGG+CGG - chr5_1:25620889-25620908 Msa0725780:intron 40.0%
GTGAAGAATTGTATCCAGAG+AGG + chr5_1:25621164-25621183 None:intergenic 40.0%
! AGATCTGAGATTGGAGAACT+TGG + chr5_1:25621252-25621271 None:intergenic 40.0%
AAACTATGAGGAGAGGAAAC+AGG - chr5_1:25621296-25621315 Msa0725780:intron 40.0%
TGATTTCTCTTCTGAGTGCA+TGG + chr5_1:25621460-25621479 None:intergenic 40.0%
TATCCACTGATGCAAAACCA+AGG - chr5_1:25619901-25619920 Msa0725780:CDS 40.0%
ATGCAAAACCAAGGCTCAAA+TGG - chr5_1:25619910-25619929 Msa0725780:CDS 40.0%
AGATGGTACAAAGTAAGTCC+TGG + chr5_1:25620148-25620167 None:intergenic 40.0%
!! CAGAGTAGGTTTCTAGTTGT+TGG + chr5_1:25620299-25620318 None:intergenic 40.0%
! AGAACAAGGTGATGACTTGT+AGG - chr5_1:25620326-25620345 Msa0725780:intron 40.0%
! GAACAAGGTGATGACTTGTA+GGG - chr5_1:25620327-25620346 Msa0725780:intron 40.0%
!! TCATGCTCTAGAAATGCAAG+TGG - chr5_1:25620777-25620796 Msa0725780:CDS 40.0%
!! CCAAGTACATTTTGGATTGG+CGG - chr5_1:25620889-25620908 Msa0725780:intron 40.0%
GTGAAGAATTGTATCCAGAG+AGG + chr5_1:25621164-25621183 None:intergenic 40.0%
! AGATCTGAGATTGGAGAACT+TGG + chr5_1:25621252-25621271 None:intergenic 40.0%
AAACTATGAGGAGAGGAAAC+AGG - chr5_1:25621296-25621315 Msa0725780:intron 40.0%
TGATTTCTCTTCTGAGTGCA+TGG + chr5_1:25621460-25621479 None:intergenic 40.0%
GGGGTGAAGAGAATCTATGA+TGG + chr5_1:25619624-25619643 None:intergenic 45.0%
CATTAGTGGGGTTATGTTGG+AGG + chr5_1:25619747-25619766 None:intergenic 45.0%
!! ATGAGGGTGATGGAAATTCC+AGG - chr5_1:25620127-25620146 Msa0725780:CDS 45.0%
CCTGTAAATGGCTCTTGAGA+TGG + chr5_1:25620165-25620184 None:intergenic 45.0%
CCATCTCAAGAGCCATTTAC+AGG - chr5_1:25620162-25620181 Msa0725780:CDS 45.0%
TCTGTGTACACTGCACCAAA+AGG + chr5_1:25620565-25620584 None:intergenic 45.0%
GCATTGTTCATCACAGCTCT+TGG + chr5_1:25620590-25620609 None:intergenic 45.0%
TGCAGCAGAGAAATCAGTCT+TGG - chr5_1:25620607-25620626 Msa0725780:CDS 45.0%
GCAGCAGAGAAATCAGTCTT+GGG - chr5_1:25620608-25620627 Msa0725780:CDS 45.0%
CAGCAGAGAAATCAGTCTTG+GGG - chr5_1:25620609-25620628 Msa0725780:CDS 45.0%
CCGCCAATCCAAAATGTACT+TGG + chr5_1:25620892-25620911 None:intergenic 45.0%
CGGTGAGTTCAGTAGAATCA+TGG - chr5_1:25620909-25620928 Msa0725780:intron 45.0%
! ATGGTGTGCTACCGTGATTT+TGG - chr5_1:25620928-25620947 Msa0725780:intron 45.0%
GGGGTGAAGAGAATCTATGA+TGG + chr5_1:25619624-25619643 None:intergenic 45.0%
CATTAGTGGGGTTATGTTGG+AGG + chr5_1:25619747-25619766 None:intergenic 45.0%
!! ATGAGGGTGATGGAAATTCC+AGG - chr5_1:25620127-25620146 Msa0725780:CDS 45.0%
CCTGTAAATGGCTCTTGAGA+TGG + chr5_1:25620165-25620184 None:intergenic 45.0%
CCATCTCAAGAGCCATTTAC+AGG - chr5_1:25620162-25620181 Msa0725780:CDS 45.0%
TCTGTGTACACTGCACCAAA+AGG + chr5_1:25620565-25620584 None:intergenic 45.0%
GCATTGTTCATCACAGCTCT+TGG + chr5_1:25620590-25620609 None:intergenic 45.0%
TGCAGCAGAGAAATCAGTCT+TGG - chr5_1:25620607-25620626 Msa0725780:CDS 45.0%
GCAGCAGAGAAATCAGTCTT+GGG - chr5_1:25620608-25620627 Msa0725780:CDS 45.0%
CAGCAGAGAAATCAGTCTTG+GGG - chr5_1:25620609-25620628 Msa0725780:CDS 45.0%
CCGCCAATCCAAAATGTACT+TGG + chr5_1:25620892-25620911 None:intergenic 45.0%
CGGTGAGTTCAGTAGAATCA+TGG - chr5_1:25620909-25620928 Msa0725780:intron 45.0%
! ATGGTGTGCTACCGTGATTT+TGG - chr5_1:25620928-25620947 Msa0725780:intron 45.0%
!!! GAGCCTTGGTTTTGCATCAG+TGG + chr5_1:25619907-25619926 None:intergenic 50.0%
TCAGGAGTCCATTTGAGCCT+TGG + chr5_1:25619921-25619940 None:intergenic 50.0%
CAGCTTCGAATCGAAGCTCA+AGG - chr5_1:25621099-25621118 Msa0725780:CDS 50.0%
! ATCGGTACTAATGAAGGCGC+AGG - chr5_1:25621134-25621153 Msa0725780:intron 50.0%
GAGGAGAGGAAACAGGACAA+TGG - chr5_1:25621303-25621322 Msa0725780:intron 50.0%
TCTGAGTGCATGGCCATTAG+TGG + chr5_1:25621450-25621469 None:intergenic 50.0%
CGAAGCACAGACACAGACAT+TGG + chr5_1:25621492-25621511 None:intergenic 50.0%
!!! GAGCCTTGGTTTTGCATCAG+TGG + chr5_1:25619907-25619926 None:intergenic 50.0%
TCAGGAGTCCATTTGAGCCT+TGG + chr5_1:25619921-25619940 None:intergenic 50.0%
CAGCTTCGAATCGAAGCTCA+AGG - chr5_1:25621099-25621118 Msa0725780:CDS 50.0%
! ATCGGTACTAATGAAGGCGC+AGG - chr5_1:25621134-25621153 Msa0725780:intron 50.0%
GAGGAGAGGAAACAGGACAA+TGG - chr5_1:25621303-25621322 Msa0725780:intron 50.0%
TCTGAGTGCATGGCCATTAG+TGG + chr5_1:25621450-25621469 None:intergenic 50.0%
CGAAGCACAGACACAGACAT+TGG + chr5_1:25621492-25621511 None:intergenic 50.0%
! GGTACTAATGAAGGCGCAGG+AGG - chr5_1:25621137-25621156 Msa0725780:intron 55.0%
! GGTACTAATGAAGGCGCAGG+AGG - chr5_1:25621137-25621156 Msa0725780:intron 55.0%
AAGGCGCAGGAGGCCCTCTC+TGG - chr5_1:25621147-25621166 Msa0725780:intron 70.0%
AAGGCGCAGGAGGCCCTCTC+TGG - chr5_1:25621147-25621166 Msa0725780:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 25619565 25621829 25619565 ID=Msa0725780;Name=Msa0725780
chr5_1 mRNA 25619565 25621829 25619565 ID=Msa0725780-mRNA-1;Parent=Msa0725780;Name=Msa0725780-mRNA-1;_AED=0.12;_eAED=0.12;_QI=308|1|1|1|1|1|6|86|352
chr5_1 exon 25619565 25620310 25619565 ID=Msa0725780-mRNA-1:exon:9270;Parent=Msa0725780-mRNA-1
chr5_1 exon 25620563 25620632 25620563 ID=Msa0725780-mRNA-1:exon:9269;Parent=Msa0725780-mRNA-1
chr5_1 exon 25620744 25620819 25620744 ID=Msa0725780-mRNA-1:exon:9268;Parent=Msa0725780-mRNA-1
chr5_1 exon 25621061 25621118 25621061 ID=Msa0725780-mRNA-1:exon:9267;Parent=Msa0725780-mRNA-1
chr5_1 exon 25621211 25621287 25621211 ID=Msa0725780-mRNA-1:exon:9266;Parent=Msa0725780-mRNA-1
chr5_1 exon 25621404 25621829 25621404 ID=Msa0725780-mRNA-1:exon:9265;Parent=Msa0725780-mRNA-1
chr5_1 five_prime_UTR 25621522 25621829 25621522 ID=Msa0725780-mRNA-1:five_prime_utr;Parent=Msa0725780-mRNA-1
chr5_1 CDS 25621404 25621521 25621404 ID=Msa0725780-mRNA-1:cds;Parent=Msa0725780-mRNA-1
chr5_1 CDS 25621211 25621287 25621211 ID=Msa0725780-mRNA-1:cds;Parent=Msa0725780-mRNA-1
chr5_1 CDS 25621061 25621118 25621061 ID=Msa0725780-mRNA-1:cds;Parent=Msa0725780-mRNA-1
chr5_1 CDS 25620744 25620819 25620744 ID=Msa0725780-mRNA-1:cds;Parent=Msa0725780-mRNA-1
chr5_1 CDS 25620563 25620632 25620563 ID=Msa0725780-mRNA-1:cds;Parent=Msa0725780-mRNA-1
chr5_1 CDS 25619651 25620310 25619651 ID=Msa0725780-mRNA-1:cds;Parent=Msa0725780-mRNA-1
chr5_1 three_prime_UTR 25619565 25619650 25619565 ID=Msa0725780-mRNA-1:three_prime_utr;Parent=Msa0725780-mRNA-1
Gene Sequence

>Msa0725780

ATGCAGAATCAAAGTATGCATTTTGTTCTATCCACTGATGCAAAACCAAGGCTCAAATGGACTCCTGAACTTCACCAAAGATTCATTGATGCAATTAATCAACTTGGAGGTGCAGCTAAAGCAACACCAAAGAGTATTATGAGGGTGATGGAAATTCCAGGACTTACTTTGTACCATCTCAAGAGCCATTTACAGAAATATAGACTTGGGAAAAGCCAACAACTAGAAACCTACTCTGACAACAAAGAACAAGTGTACACAGAAACCAAGAGCTGTGATGAACAATGCAGCAGAGAAATCAGTCTTGGGGACCAGAATCAAATCACTGAAAACATGGAGATATCTCATGCTCTAGAAATGCAAGTGGAAGTAGAAAGGAAACTTAATGAACAAATTGAGGTGCAGAAACATTTGCAGCTTCGAATCGAAGCTCAAGGAAAATATTTACAATCGGTACTAATGAAGGCGCAGGAGGCCCTCTCTGGATACAATTCTTCACCAATTGGAATAAAACTGACAAAAGACGAACTGTCTCAATTGGTTACTATGATCAACAATGCATGTCCAAGTTCTCCAATCTCAGATCTAACAGAATCAAGAGGGTTAAGTTTAAACTATGAGGAGAGGAAACAGGACAATGGAACTTCTTTGTGTTCATTGGAAAGTTCTTTGACATCTTCTGAAATCTCAGAAAGGGAAGATAAACATTCAATAGAAGAAATAGGAGACTTCAAAAATTCTAGTGCTATTTCACTTGAATTGCCACTAATGGCCATGCACTCAGAAGAGAAATCATTGTCGTGTCCAATGTCTGTGTCTGTGCTTCGTAGCGATAATTTAAGTAATGAAGTCAATGGGAGAAAGAGAAATGAAGAAACTAAATTTGATGGTAGCTATGTTGAGAATTATTCATTAAGAAAAAGAGGTGGCAACAAGTTGAAGAAAGCTAAGTTGTCAGAAAAGTTTGACTTGAATAGCCAATATCAGAATGACAAGGACTCAACAAGTTCAAAAACGTTACTAGACTTAAATTGCAGTTTAAACTTTTGTGAACCATGA
Protein sequence

>Msa0725780

MQNQSMHFVLSTDAKPRLKWTPELHQRFIDAINQLGGAAKATPKSIMRVMEIPGLTLYHLKSHLQKYRLGKSQQLETYSDNKEQVYTETKSCDEQCSREISLGDQNQITENMEISHALEMQVEVERKLNEQIEVQKHLQLRIEAQGKYLQSVLMKAQEALSGYNSSPIGIKLTKDELSQLVTMINNACPSSPISDLTESRGLSLNYEERKQDNGTSLCSLESSLTSSEISEREDKHSIEEIGDFKNSSAISLELPLMAMHSEEKSLSCPMSVSVLRSDNLSNEVNGRKRNEETKFDGSYVENYSLRKRGGNKLKKAKLSEKFDLNSQYQNDKDSTSSKTLLDLNCSLNFCEP*