AlfalfaGEDB | Msa0736600

M. sativa cultivar zhongmu-4 / Msa0736600

KEGG: K04733
GO: GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0007275 GO:0007389 GO:0008150 GO:0009505 GO:0009531 GO:0009553 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0010154 GO:0010453 GO:0022414 GO:0022603 GO:0030312 GO:0032501 GO:0032502 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045595 GO:0048226 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0051302 GO:0061458 GO:0065001 GO:0065007 GO:0071944 GO:0090558 GO:0090708 GO:0099402 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0736600	XP_003611243.1	96.334	682	24	1	1	681	1	682	0.0	1353

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0736600	sp\|Q6K4T4\|SERK4_ORYSJ	27.602	663	331	15	30	674	27	558	3.18e-67	234

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0736600	G7KG73	96.334	682	24	1	1	681	1	682	0.0	1353

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002710	Msa0736600	0.810497	1.119586e-50	-8.615850e-47
Msa0006110	Msa0736600	0.834885	2.313620e-56	-8.615850e-47
Msa0014570	Msa0736600	0.827743	1.321379e-54	-8.615850e-47
Msa0027820	Msa0736600	0.805887	1.074653e-49	-8.615850e-47
Msa0036140	Msa0736600	0.823820	1.127373e-53	-8.615850e-47
Msa0039570	Msa0736600	0.819903	9.094659e-53	-8.615850e-47
Msa0042550	Msa0736600	0.801549	8.544996e-49	-8.615850e-47
Msa0044090	Msa0736600	0.801529	8.627195e-49	-8.615850e-47
Msa0056450	Msa0736600	0.819368	1.205174e-52	-8.615850e-47
Msa0074600	Msa0736600	0.806636	7.473005e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0736600	MtrunA17_Chr5g0398741	96.334	682	24	1	1	681	1	682	0.0	1353
Msa0736600	MtrunA17_Chr6g0476611	54.717	689	270	7	10	674	7	677	0.0	741
Msa0736600	MtrunA17_Chr7g0229941	52.283	679	299	8	6	675	4	666	0.0	676
Msa0736600	MtrunA17_Chr3g0128731	30.435	621	364	17	73	677	407	975	3.01e-69	244
Msa0736600	MtrunA17_Chr3g0128731	33.491	212	136	5	25	232	40	250	1.64e-26	115
Msa0736600	MtrunA17_Chr3g0128731	32.275	189	104	1	70	234	184	372	8.76e-21	97.8
Msa0736600	MtrunA17_Chr3g0128731	29.412	204	114	2	60	235	224	425	3.25e-15	79.7
Msa0736600	MtrunA17_Chr3g0128731	35.294	119	77	0	63	181	445	563	3.10e-12	70.1
Msa0736600	MtrunA17_Chr7g0261331	28.549	648	341	18	70	675	633	1200	1.38e-65	235
Msa0736600	MtrunA17_Chr7g0261331	41.463	164	95	1	73	235	346	509	2.61e-25	112

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0736600	AT4G22730.1	56.808	683	267	11	10	674	10	682	0.0	746
Msa0736600	AT5G51560.1	52.439	656	291	7	27	674	31	673	0.0	657
Msa0736600	AT2G45340.1	52.481	665	295	12	31	679	30	689	0.0	657
Msa0736600	AT4G22730.2	57.358	530	199	10	10	522	10	529	0.0	567
Msa0736600	AT3G25560.1	27.994	668	337	18	25	674	40	581	2.86e-71	244
Msa0736600	AT3G56370.1	30.843	629	363	15	68	677	376	951	4.16e-71	249
Msa0736600	AT3G56370.1	36.150	213	128	7	25	232	26	235	1.49e-22	103
Msa0736600	AT3G56370.1	37.500	160	100	0	70	229	169	328	2.88e-22	102
Msa0736600	AT3G56370.1	39.216	153	93	0	80	232	203	355	6.21e-21	98.6
Msa0736600	AT3G56370.1	33.742	163	108	0	73	235	148	310	1.42e-17	87.8

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Find 174 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGGTGGATGTGATTC+AGG	0.386467	5_1:-53172430	Msa0736600:CDS
AAACTGGTTTAGATATTCAT+TGG	0.365203	5_1:+53173668	None:intergenic
AAATCCTCTCTTGATCCAGA+GGG	0.581086	5_1:-53175441	Msa0736600:CDS
AAATCTTCTGCTTTCGTCGA+CGG	0.464486	5_1:+53173829	None:intergenic
AAATTCGCAGGCTCCGGGCG+AGG	0.489244	5_1:+53173978	None:intergenic
AAATTCTCGGCAACGTATAA+GGG	0.443320	5_1:-53173576	Msa0736600:CDS
AACCAAGGTTTATGTGGAGT+AGG	0.546111	5_1:-53174101	Msa0736600:CDS
AACCTTGGTTGTTTGCCCCT+TGG	0.396973	5_1:+53174114	None:intergenic
AACTTCCAAATGTGCAATAT+TGG	0.294890	5_1:+53174309	None:intergenic
AAGAGGGTTACTATCATCAA+GGG	0.629813	5_1:-53173300	Msa0736600:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTCAAACAAAGTTCAAACA+AGG	-	chr5_1:53172273-53172292	Msa0736600:three_prime_UTR	30.0%
GTAAGATTAGAAATCTGTGA+TGG	+	chr5_1:53172755-53172774	None:intergenic	30.0%
AGATAAAGAAGATACCTTAC+TGG	-	chr5_1:53173106-53173125	Msa0736600:intron	30.0%
CCATAAAAATTGAACGTGAA+TGG	+	chr5_1:53173396-53173415	None:intergenic	30.0%
AACTTCCAAATGTGCAATAT+TGG	+	chr5_1:53173665-53173684	None:intergenic	30.0%
CATCCAAAACAATTCTTTGT+CGG	-	chr5_1:53173690-53173709	Msa0736600:CDS	30.0%
ATCCAAAACAATTCTTTGTC+GGG	-	chr5_1:53173691-53173710	Msa0736600:CDS	30.0%
AAGACGAATGCCAAAAAATT+TGG	+	chr5_1:53173757-53173776	None:intergenic	30.0%
ATTTCATCAAACTCTTCTGA+GGG	-	chr5_1:53174161-53174180	Msa0736600:intron	30.0%
TCAAGATTAACAAGTGTAGA+TGG	+	chr5_1:53174230-53174249	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	53172218	53175775	53172218	ID=Msa0736600;Name=Msa0736600
chr5_1	mRNA	53172218	53175775	53172218	ID=Msa0736600-mRNA-1;Parent=Msa0736600;Name=Msa0736600-mRNA-1;_AED=0.04;_eAED=0.04;_QI=210\|1\|1\|1\|1\|1\|4\|183\|681
chr5_1	exon	53172218	53172882	53172218	ID=Msa0736600-mRNA-1:exon:14946;Parent=Msa0736600-mRNA-1
chr5_1	exon	53173289	53174161	53173289	ID=Msa0736600-mRNA-1:exon:14945;Parent=Msa0736600-mRNA-1
chr5_1	exon	53174266	53174526	53174266	ID=Msa0736600-mRNA-1:exon:14944;Parent=Msa0736600-mRNA-1
chr5_1	exon	53175136	53175775	53175136	ID=Msa0736600-mRNA-1:exon:14943;Parent=Msa0736600-mRNA-1
chr5_1	five_prime_UTR	53175566	53175775	53175566	ID=Msa0736600-mRNA-1:five_prime_utr;Parent=Msa0736600-mRNA-1
chr5_1	CDS	53175136	53175565	53175136	ID=Msa0736600-mRNA-1:cds;Parent=Msa0736600-mRNA-1
chr5_1	CDS	53174266	53174526	53174266	ID=Msa0736600-mRNA-1:cds;Parent=Msa0736600-mRNA-1
chr5_1	CDS	53173289	53174161	53173289	ID=Msa0736600-mRNA-1:cds;Parent=Msa0736600-mRNA-1
chr5_1	CDS	53172401	53172882	53172401	ID=Msa0736600-mRNA-1:cds;Parent=Msa0736600-mRNA-1
chr5_1	three_prime_UTR	53172218	53172400	53172218	ID=Msa0736600-mRNA-1:three_prime_utr;Parent=Msa0736600-mRNA-1

Gene Sequence

>Msa0736600

ATGAACTCCTTCCATCTCCTCTTTTCTATGTTTCTTTTCATTGTATTTACAACTTCACAAACTGTTCTTGGAAATGCAGAGTTAAGGGCTTTGATGGATTTGAAATCCTCTCTTGATCCAGAGGGAAAGATTCTTACCTCATGGATCAGTAATGGTAATCCATGTAGTGGTTCATTTGAAGGAGTTGCTTGCAATGAACATCGGAAAGTGGCTAATATCTCTTTGCAGGGAAAGGGACTTTCTGGTTCATTATCTTCAGCTGTGGCTGAACTCAAATGCTTGTCAGGGTTATACTTGCATTATAACAATCTTTCTGGCGAGATACCATCACAGATTTCTAATCTTACTGAACTTGTTGATCTCTATCTTGATGTTAATAATCTTTCTGGAAGAATTCCTCCTGAGATTGGCAACATGGCTAGTCTCCAAGTACTTCAGTTGGGAGATAATCAATTGGTAGGGAATATACCTACACAGATGGGTTCCTTGAAGCAACTTACAACTCTTGCTTTGCAATATAACAAGTTAACTGGTCAAATTCCTCTTAGCTTAGGGAACTTGGAAAATCTAAGCAGGCTAAATTTGAGCTTCAACAATTTCAGTGGTGCTATTCCTGCAGCACTAGCCAATATTGCACATTTGGAAGTTCTTGACATCCAAAACAATTCTTTGTCGGGAACTGTTCCTTCTGCATTGAATAGACTTGGGGAAGGATTCCAAGGGGCAAACAACCAAGGTTTATGTGGAGTAGGGATTTCTACTTTGAGAGCTTGCAACAAAGAACCAGATTTAAACGTCAGCAACATTGATACCTCGGATCAAGACCACCTCAAAAATAGTAATCCTGCAACGCCTCGCCCGGAGCCTGCGAATTTCCAAATGCATTGTAACCAGACACATTGCTCAAAATCAAGAAGTGTTCCTATAATCATCACAGCGAGTGTTATAACCATCATCACCCTCACACTCATAGGTGCTGGATTGTTTACATTTGTCAAATACCGTCGACGAAAGCAGAAGATTTCATCAAACTCTTCTGAGGGGAAATTTAGTCCTCAGCAACCTAAAGAGTTATACCGAAAAAGTCCATCTACACTTGTTAATCTTGACTATTATAATGGATGTTATCCAATGCCTGATGATCAAAATGCCGGTGGATTATCCAATGAATATCTAAACCAGTTTAGGTTTAATGTAGATGAAGTCGAATCTGCAACACAGTATTTTTCAGAAGTGAATTTATTGCGTAAGAGCAAATTCTCGGCAACGTATAAGGGAGTTCTCAGAGATGGTTCTCTTGTGGCCATTACAAGCATTAACATGTCATGCTGCAAAACTGAGGAAGCCGAATTTGTAAAAGGATTGAGCTTATTAACCTCACTTAGACATGAAAACGTTGTCAAGCTAAGAGGTTTCTGTTGCTCAAGTAGTAGAGGTGAATGTTACCTTATCAATGACTTTGCTATGATGGGTGACCTGTCCCAATATCTTGACATAGAAGATAGAAGTGGCCATTTGCTTGACTGGTCCAAGAGGGTTACTATCATCAAGGGCATTGCAAAGGGTATAGGATATCTGCACAGCAATGAAGCAAGCAAACCTACGATAGTACACCAGAATATTTCAGTGGAGAATGTTCTCCTTGACAAAGATTTTAATCCTTTGATCATGAATGCGGGACTTCCCAAGCTTCTCGCAGACGATGTAGTTTTCTCGGCTCTAAAAGTAAGTGCTGCAATGGGATACCTAGCTCCCGAATACATTACTACGGGACGCTTTACCGAAAAGAGTGATATATACGCATTTGGAGTTATTGTACTTCAAGTTTTATCTGGCAAGACGACGATAGGTGGTTCAATACGGACGGCATTTCAGTCTTTCAAATTTGATGATTGCATCGACACAAATCTTAGGGGAAGATATTCTAATTCTGAAGCAAGCATACTTACAAAGCTTGGAATGCAGTGTATACATGAAAGCCCCGATGAAAGACCAAACATGGTGGATGTGATTCAGGAGTTAAGCGTGTTTCCGGCTCATTCATAA

Protein sequence

>Msa0736600

MNSFHLLFSMFLFIVFTTSQTVLGNAELRALMDLKSSLDPEGKILTSWISNGNPCSGSFEGVACNEHRKVANISLQGKGLSGSLSSAVAELKCLSGLYLHYNNLSGEIPSQISNLTELVDLYLDVNNLSGRIPPEIGNMASLQVLQLGDNQLVGNIPTQMGSLKQLTTLALQYNKLTGQIPLSLGNLENLSRLNLSFNNFSGAIPAALANIAHLEVLDIQNNSLSGTVPSALNRLGEGFQGANNQGLCGVGISTLRACNKEPDLNVSNIDTSDQDHLKNSNPATPRPEPANFQMHCNQTHCSKSRSVPIIITASVITIITLTLIGAGLFTFVKYRRRKQKISSNSSEGKFSPQQPKELYRKSPSTLVNLDYYNGCYPMPDDQNAGGLSNEYLNQFRFNVDEVESATQYFSEVNLLRKSKFSATYKGVLRDGSLVAITSINMSCCKTEEAEFVKGLSLLTSLRHENVVKLRGFCCSSSRGECYLINDFAMMGDLSQYLDIEDRSGHLLDWSKRVTIIKGIAKGIGYLHSNEASKPTIVHQNISVENVLLDKDFNPLIMNAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKTTIGGSIRTAFQSFKFDDCIDTNLRGRYSNSEASILTKLGMQCIHESPDERPNMVDVIQELSVFPAHS*