AlfalfaGEDB | Msa0766360

M. sativa cultivar zhongmu-4 / Msa0766360

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0766360	sp\|F4I274\|PHL8_ARATH	50.000	266	116	5	6	262	25	282	3.64e-75	238

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0766360	G7KGL2	87.819	353	42	1	1	352	1	353	0.0	610

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TFs/TRs:

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Gene ID	Type	Classification
Msa0766360	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002460	Msa0766360	0.805529	1.277662e-49	-8.615850e-47
Msa0006110	Msa0766360	0.837400	5.314305e-57	-8.615850e-47
Msa0014570	Msa0766360	0.806300	8.793645e-50	-8.615850e-47
Msa0036140	Msa0766360	0.825888	3.666273e-54	-8.615850e-47
Msa0042550	Msa0766360	0.817368	3.419174e-52	-8.615850e-47
Msa0054820	Msa0766360	0.802224	6.208839e-49	-8.615850e-47
Msa0056450	Msa0766360	0.802128	6.498811e-49	-8.615850e-47
Msa0072900	Msa0766360	0.800067	1.715123e-48	-8.615850e-47
Msa0075880	Msa0766360	0.807764	4.310457e-50	-8.615850e-47
Msa0077450	Msa0766360	0.808210	3.463062e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0766360	MtrunA17_Chr5g0417521	87.819	353	42	1	1	352	1	353	0.0	610
Msa0766360	MtrunA17_Chr4g0042451	59.143	350	127	5	2	349	4	339	3.63e-128	370
Msa0766360	MtrunA17_Chr2g0321461	51.020	245	102	5	8	244	38	272	3.00e-70	224
Msa0766360	MtrunA17_Chr6g0461641	49.565	230	109	3	8	233	35	261	5.14e-64	208
Msa0766360	MtrunA17_Chr8g0356501	54.777	157	62	1	8	164	30	177	5.08e-49	168
Msa0766360	MtrunA17_Chr5g0409731	44.865	185	94	4	5	186	15	194	3.51e-46	159
Msa0766360	MtrunA17_Chr2g0310011	52.174	161	68	3	8	168	28	179	1.88e-45	158
Msa0766360	MtrunA17_Chr2g0290991	41.949	236	116	7	8	230	32	259	2.17e-42	149
Msa0766360	MtrunA17_Chr7g0254981	50.345	145	63	2	14	158	49	184	6.42e-42	147
Msa0766360	MtrunA17_Chr1g0197171	49.296	142	69	1	8	149	37	175	3.70e-39	140

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0766360	AT1G69580.1	50.000	266	116	5	6	262	25	282	3.70e-76	238
Msa0766360	AT1G69580.2	49.438	267	117	5	6	262	25	283	5.67e-75	235
Msa0766360	AT3G04030.3	54.077	233	97	4	8	235	38	265	7.24e-69	221
Msa0766360	AT5G18240.1	52.361	233	101	4	8	235	38	265	7.18e-68	219
Msa0766360	AT5G18240.4	52.361	233	101	4	8	235	38	265	7.18e-68	219
Msa0766360	AT3G04030.2	53.219	233	98	5	8	235	38	264	1.04e-65	213
Msa0766360	AT5G18240.5	51.502	233	101	5	8	235	38	263	1.89e-64	210
Msa0766360	AT3G04030.1	51.931	233	96	5	8	235	38	259	6.94e-62	203
Msa0766360	AT5G18240.2	50.215	233	100	5	8	235	38	259	4.23e-61	201
Msa0766360	AT5G18240.3	50.215	233	100	5	8	235	38	259	4.23e-61	201

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Find 73 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACGAACTGTCTCAAT+TGG	0.442895	5_2:-27969839	Msa0766360:CDS
AAAATGGGAATACCTGTAAA+TGG	0.318364	5_2:+27970870	None:intergenic
AAACATTAGTGGGGTTATGT+TGG	0.503401	5_2:+27971297	None:intergenic
AAACATTCAATAGAAGAAAT+AGG	0.327972	5_2:-27969655	Msa0766360:CDS
AAACTATGAGGAGAGGAAAC+AGG	0.459208	5_2:-27969746	Msa0766360:CDS
AAAGAGTATTATGAGGGTGA+TGG	0.553041	5_2:-27970927	Msa0766360:CDS
AAATGCAAGTGGAAGTAGAA+AGG	0.528516	5_2:-27970255	Msa0766360:CDS
AACACCAAAGAGTATTATGA+GGG	0.627296	5_2:-27970933	Msa0766360:CDS
AAGGCGCAGGAGGCCCTCTC+TGG	0.408389	5_2:-27969895	Msa0766360:CDS
AATATTGATGCAAATCTAAA+AGG	0.293329	5_2:-27971202	Msa0766360:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCATATCAGGAAACATTAGT+GGG	+	chr5_2:27969429-27969448	None:intergenic	30.0%
TTCATATCAGGAAACATTAG+TGG	+	chr5_2:27969430-27969449	None:intergenic	30.0%
AAAATGGGAATACCTGTAAA+TGG	+	chr5_2:27969846-27969865	None:intergenic	30.0%
TGGTTGTAGAAATATAGACT+TGG	-	chr5_2:27969936-27969955	Msa0766360:CDS	30.0%
GGTTGTAGAAATATAGACTT+GGG	-	chr5_2:27969937-27969956	Msa0766360:CDS	30.0%
ATTACTCAGTGATTTGATTC+TGG	+	chr5_2:27970306-27970325	None:intergenic	30.0%
TGCAACATTTAGTGCATATT+TGG	+	chr5_2:27970699-27970718	None:intergenic	30.0%
TATGCACTAAATGTTGCATA+AGG	-	chr5_2:27970701-27970720	Msa0766360:intron	30.0%
TAAGGACGTGTTAATCAATT+TGG	-	chr5_2:27970719-27970738	Msa0766360:intron	30.0%
TCAATTTGGTTGTTCATTTC+AGG	-	chr5_2:27970733-27970752	Msa0766360:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	27969234	27971501	27969234	ID=Msa0766360;Name=Msa0766360
chr5_2	mRNA	27969234	27971501	27969234	ID=Msa0766360-mRNA-1;Parent=Msa0766360;Name=Msa0766360-mRNA-1;_AED=0.12;_eAED=0.12;_QI=308\|1\|1\|1\|1\|1\|6\|87\|352
chr5_2	exon	27969234	27969980	27969234	ID=Msa0766360-mRNA-1:exon:10874;Parent=Msa0766360-mRNA-1
chr5_2	exon	27970234	27970303	27970234	ID=Msa0766360-mRNA-1:exon:10873;Parent=Msa0766360-mRNA-1
chr5_2	exon	27970415	27970490	27970415	ID=Msa0766360-mRNA-1:exon:10872;Parent=Msa0766360-mRNA-1
chr5_2	exon	27970733	27970790	27970733	ID=Msa0766360-mRNA-1:exon:10871;Parent=Msa0766360-mRNA-1
chr5_2	exon	27970883	27970959	27970883	ID=Msa0766360-mRNA-1:exon:10870;Parent=Msa0766360-mRNA-1
chr5_2	exon	27971076	27971501	27971076	ID=Msa0766360-mRNA-1:exon:10869;Parent=Msa0766360-mRNA-1
chr5_2	five_prime_UTR	27971194	27971501	27971194	ID=Msa0766360-mRNA-1:five_prime_utr;Parent=Msa0766360-mRNA-1
chr5_2	CDS	27971076	27971193	27971076	ID=Msa0766360-mRNA-1:cds;Parent=Msa0766360-mRNA-1
chr5_2	CDS	27970883	27970959	27970883	ID=Msa0766360-mRNA-1:cds;Parent=Msa0766360-mRNA-1
chr5_2	CDS	27970733	27970790	27970733	ID=Msa0766360-mRNA-1:cds;Parent=Msa0766360-mRNA-1
chr5_2	CDS	27970415	27970490	27970415	ID=Msa0766360-mRNA-1:cds;Parent=Msa0766360-mRNA-1
chr5_2	CDS	27970234	27970303	27970234	ID=Msa0766360-mRNA-1:cds;Parent=Msa0766360-mRNA-1
chr5_2	CDS	27969321	27969980	27969321	ID=Msa0766360-mRNA-1:cds;Parent=Msa0766360-mRNA-1
chr5_2	three_prime_UTR	27969234	27969320	27969234	ID=Msa0766360-mRNA-1:three_prime_utr;Parent=Msa0766360-mRNA-1

Gene Sequence

>Msa0766360

ATGCAGAATCAAAGTATGCATTTTGTTCTATCCACTGATGCAAAACCAAGGCTCAAATGGACTCCTGAACTTCACCAAAGATTCATTGATGCAATTAATCAACTTGGAGGTGCAGCTAAAGCAACACCAAAGAGTATTATGAGGGTGATGGAAATTCCAGGACTTACTTTGTACCATCTCAAGAGCCATTTACAGAAATATAGACTTGGGAAAAGCCAACAACTAGAAACCTACTCTGACAACAAAGAACAAGTGTACACAGAAACCAAGAGCTGTGATGAACAATGCAGCAGAGAAATCAGTCTTGGGGACCAGAATCAAATCACTGAAAACATGGAGATATCTCATGCTCTAGAAATGCAAGTGGAAGTAGAAAGGAAACTTAATGAACAAATTGAGGTGCAGAAACATTTGCAGCTTCGAATCGAAGCTCAAGGAAAATATTTACAATCGGTACTAATGAAGGCGCAGGAGGCCCTCTCTGGATACAATTCTTCACCAATTGGAATAAAACTGACAAAAGACGAACTGTCTCAATTGGTTACTATGATCAACAATGCATGTCCAAGTTCTCCAATCTCAGATCTAACAGAATCAAGAGGGTTAAGTTTAAACTATGAGGAGAGGAAACAGGACAATGGAACTTCTTTGTGTTCATTGGAAAGTTCTTTGACATCTTCTGAAATCTCAGAAAGGGAAGATAAACATTCAATAGAAGAAATAGGAGACTTCAAAAATTCTAGTGCTATTTCACTTGAATTGCCACTAATGGCCATGCACTCAGAAGAGAAATCATTGTCGTGTCCAATGTCTGTGTCTGTGCTTCGTAGCGATAATTTAAGTAATGAAGTCAATGGGAGAAAGAGAAATGAAGAAACTAAATTTGATGGTAGCTATGTTGAGAATTATTCATTAAGAAAAAGAGGTGGCAACAAGTTGAAGAAAGCTAAGTTGTCAGAAAAGTTTGACTTGAATAGCCAATATCAGAATGACAAGGACTCAACAAGTTCAAAAACGTTACTAGACTTAAATTGCAGTTTAAACTTTTGTGAACCATGA

Protein sequence

>Msa0766360

MQNQSMHFVLSTDAKPRLKWTPELHQRFIDAINQLGGAAKATPKSIMRVMEIPGLTLYHLKSHLQKYRLGKSQQLETYSDNKEQVYTETKSCDEQCSREISLGDQNQITENMEISHALEMQVEVERKLNEQIEVQKHLQLRIEAQGKYLQSVLMKAQEALSGYNSSPIGIKLTKDELSQLVTMINNACPSSPISDLTESRGLSLNYEERKQDNGTSLCSLESSLTSSEISEREDKHSIEEIGDFKNSSAISLELPLMAMHSEEKSLSCPMSVSVLRSDNLSNEVNGRKRNEETKFDGSYVENYSLRKRGGNKLKKAKLSEKFDLNSQYQNDKDSTSSKTLLDLNCSLNFCEP*