AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0723990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0723990 MtrunA17_Chr5g0414961 91.051 514 28 4 1 501 112 620 0.0 894
Msa0723990 MtrunA17_Chr3g0123121 29.132 357 181 14 10 318 31 363 4.14e-21 97.1
Msa0723990 MtrunA17_Chr6g0458401 67.857 56 18 0 7 62 27 82 4.39e-19 90.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0723990 AT1G70100.4 37.376 503 217 21 6 459 20 473 4.24e-59 202
Msa0723990 AT1G70100.3 37.575 503 216 21 6 459 20 473 4.61e-59 203
Msa0723990 AT1G70100.6 37.575 503 216 21 6 459 20 473 4.61e-59 203
Msa0723990 AT1G70100.5 37.372 487 211 21 6 443 20 461 1.24e-56 196
Msa0723990 AT1G70100.1 37.372 487 211 21 6 443 20 461 1.24e-56 196
Msa0723990 AT1G70100.2 37.372 487 211 21 6 443 20 461 1.24e-56 196
Msa0723990 AT1G24160.1 46.047 215 75 10 6 211 30 212 1.83e-37 145
Msa0723990 AT1G24160.2 46.047 215 75 10 6 211 30 212 1.83e-37 145
Msa0723990 AT3G26050.1 52.564 78 37 0 8 85 28 105 1.42e-19 92.0
Msa0723990 AT3G27350.1 64.516 62 21 1 10 70 30 91 2.26e-18 85.5
Msa0723990 AT3G27350.2 64.516 62 21 1 10 70 30 91 7.78e-18 84.7
Msa0723990 AT1G70950.1 60.656 61 24 0 8 68 16 76 3.03e-17 84.7
Msa0723990 AT5G40700.3 66.038 53 18 0 10 62 30 82 7.84e-17 80.9
Msa0723990 AT5G40700.1 66.038 53 18 0 10 62 30 82 1.42e-16 80.9
Msa0723990 AT5G40700.2 66.038 53 18 0 10 62 30 82 1.42e-16 80.9
Msa0723990 AT1G23060.1 62.295 61 23 0 8 68 16 76 3.65e-16 80.5
Msa0723990 AT1G23060.4 62.295 61 23 0 8 68 16 76 3.65e-16 80.5
Msa0723990 AT3G01710.4 61.404 57 21 1 7 62 20 76 1.87e-14 74.7
Msa0723990 AT3G01710.2 61.404 57 21 1 7 62 20 76 2.23e-14 75.5
Msa0723990 AT3G01710.1 61.404 57 21 1 7 62 20 76 2.33e-14 75.1
Msa0723990 AT3G01710.3 61.404 57 21 1 7 62 20 76 2.73e-14 75.1
Msa0723990 AT3G27350.3 67.347 49 15 1 23 70 3 51 3.53e-13 70.5

Find 131 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATGTCTTTCCAACAATTT+TGG 0.117947 5_1:-22010559 Msa0723990:five_prime_UTR
ACTTCTTCCAAATACTTATT+TGG 0.140230 5_1:+22010109 None:intergenic
CAATATTCTTCTAGTTAAAT+AGG 0.170476 5_1:-22005232 Msa0723990:three_prime_UTR
ATTCTCTCCAAATAAGTATT+TGG 0.192425 5_1:-22010116 Msa0723990:CDS
ATCTGCCGCTTCAACTAAAA+AGG 0.192462 5_1:-22009279 Msa0723990:CDS
ATCTCTCATTATGGATAGTA+TGG 0.195712 5_1:-22009102 Msa0723990:CDS
AAGCAAACCTTAGATTTCTT+TGG 0.233076 5_1:+22009518 None:intergenic
TCAACTTTGCGGAAAGAAAA+TGG 0.242699 5_1:-22008804 Msa0723990:CDS
GAGCCAACAATTCGGCTTTC+CGG 0.260429 5_1:+22010011 None:intergenic
AGCCAACAATTCGGCTTTCC+GGG 0.287622 5_1:+22010012 None:intergenic
TTGGCTGGTTAAAATTCTTC+TGG 0.301994 5_1:+22009042 None:intergenic
TCTAGTTTAGTTTGCAATAG+TGG 0.304508 5_1:-22005265 Msa0723990:three_prime_UTR
TATGAGGAAATCTCTCATTA+TGG 0.319055 5_1:-22009111 Msa0723990:CDS
CATCATCATTTGTCTCTTTG+TGG 0.334602 5_1:+22010828 None:intergenic
GATAGGTTATCCCTGTGAAT+AGG 0.335244 5_1:-22009415 Msa0723990:intron
GGAGGAGGAAGTTGCGGTTT+CGG 0.336314 5_1:-22009759 Msa0723990:CDS
TTGCAAGTGTCTGTTTCTTT+TGG 0.337585 5_1:-22010181 Msa0723990:CDS
TTCTTCTGTGCTACTGATCC+AGG 0.363303 5_1:+22010070 None:intergenic
ATCAGCCTGGTTGGTGAAAT+CGG 0.364294 5_1:-22009809 Msa0723990:CDS
GGATCATCCAAAGAAATCTA+AGG 0.365888 5_1:-22009525 Msa0723990:intron
TGTGAGACTGATTCGGAATT+CGG 0.389869 5_1:-22009887 Msa0723990:CDS
AATATTCTTCTAGTTAAATA+GGG 0.390944 5_1:-22005231 Msa0723990:three_prime_UTR
TTCCAACTTCTTCAACTTTG+CGG 0.397164 5_1:-22008815 Msa0723990:CDS
CTAGAAGTAACTTGCCTCCT+AGG 0.410045 5_1:+22009239 None:intergenic
AAGCTACAACCCAAAATTGT+TGG 0.410245 5_1:+22010549 None:intergenic
TTCCGCAAAGTTGAAGAAGT+TGG 0.411188 5_1:+22008813 None:intergenic
GGAACTGGATCAGGCTTACT+TGG 0.415359 5_1:+22009161 None:intergenic
ATGATGATGTTACTGTAGTA+AGG 0.415437 5_1:-22010814 Msa0723990:five_prime_UTR
TAGTTCAAACTTCATGGAAT+GGG 0.430139 5_1:+22005145 None:intergenic
TTGTGAATTTCTTCAAGATA+AGG 0.433130 5_1:-22010527 Msa0723990:intron
ATAGGTTATCCCTGTGAATA+GGG 0.434793 5_1:-22009414 Msa0723990:intron
TTCCTCATAGTACGAGGAAC+TGG 0.439423 5_1:+22009125 None:intergenic
TGTCATCATTGACTTCTCCT+TGG 0.441614 5_1:+22005305 None:intergenic
ATCCTGGACAGGCTCCTTCA+AGG 0.441961 5_1:-22008854 Msa0723990:intron
TTCAGATCAGAAGAAAATAA+TGG 0.443228 5_1:-22009956 Msa0723990:CDS
CTTCTCTTGAGCCAACAATT+CGG 0.451413 5_1:+22010003 None:intergenic
TTGCACATGTCTATGAGCTT+AGG 0.451785 5_1:-22009185 Msa0723990:CDS
AGAAGGAGATGGAGAGGGAG+AGG 0.454029 5_1:-22009985 Msa0723990:CDS
GGTTCAGTAGTATGAGGAAC+TGG 0.457148 5_1:+22009146 None:intergenic
CTAGTTCAAACTTCATGGAA+TGG 0.459482 5_1:+22005144 None:intergenic
GGCCCGGAAAGCCGAATTGT+TGG 0.460858 5_1:-22010014 Msa0723990:CDS
AAAGCTAAAGAATGATTTCA+AGG 0.460883 5_1:-22006778 Msa0723990:CDS
CATAGACATGTGCAAAGATC+TGG 0.461378 5_1:+22009193 None:intergenic
CCACCTCAACTGATGAACTT+TGG 0.468288 5_1:+22009729 None:intergenic
AAAATGATTAATCTTGATCA+TGG 0.470551 5_1:-22010596 Msa0723990:five_prime_UTR
CTCAAGAGAAGGAGATGGAG+AGG 0.471982 5_1:-22009991 Msa0723990:CDS
TCCTGGACAGGCTCCTTCAA+GGG 0.472318 5_1:-22008853 Msa0723990:intron
TCCATCCTCTCAACGGTAGC+AGG 0.474386 5_1:+22007929 None:intergenic
TTCTTGCTTATCGCATTCCT+CGG 0.475098 5_1:+22009838 None:intergenic
TTGTCTCTTTGTGGTACTTG+AGG 0.482949 5_1:+22010837 None:intergenic
GAGAATAAAGAGGTGGAAAG+TGG 0.486653 5_1:-22009707 Msa0723990:CDS
GAGTCATGCGGATGATTTGA+AGG 0.487910 5_1:-22009783 Msa0723990:CDS
TGGAAGTGTTGTACGAACTT+TGG 0.489754 5_1:-22007897 Msa0723990:CDS
GCCTGGTTGGTGAAATCGGC+AGG 0.491982 5_1:-22009805 Msa0723990:CDS
GTCGAAATTTGAGATGCCTT+AGG 0.493805 5_1:+22009347 None:intergenic
TTGATAATGATTCACTGTCA+TGG 0.498358 5_1:-22010153 Msa0723990:CDS
GCCTGCTACCGTTGAGAGGA+TGG 0.498871 5_1:-22007930 Msa0723990:CDS
GAAGGAGGAGGAGGAAGTTG+CGG 0.503678 5_1:-22009765 Msa0723990:CDS
TGATAATGATTCACTGTCAT+GGG 0.504101 5_1:-22010152 Msa0723990:CDS
AATGATTATGAGTAAAGTAA+AGG 0.506528 5_1:+22010706 None:intergenic
GTAGTATGAGGAACTGGATC+AGG 0.506674 5_1:+22009152 None:intergenic
AGTGACATTAAATCAGAGAA+AGG 0.512134 5_1:-22007866 Msa0723990:CDS
GGTATAGATCTGAGCGGTAA+TGG 0.512864 5_1:-22009935 Msa0723990:CDS
ATCAGCTCCAACTAAAACAT+TGG 0.513745 5_1:-22009303 Msa0723990:CDS
ACCACGATAAGAAGTTGGTA+GGG 0.513841 5_1:+22006749 None:intergenic
AGAGAGGAGTAAATGAATAG+AGG 0.513950 5_1:-22005360 Msa0723990:three_prime_UTR
GCGTCTCCAAACAAAATTGA+AGG 0.515742 5_1:-22007692 Msa0723990:intron
GTGACATTAAATCAGAGAAA+GGG 0.517883 5_1:-22007865 Msa0723990:CDS
GAAGGAGATGGAGAGGGAGA+GGG 0.518011 5_1:-22009984 Msa0723990:CDS
GGATGATTTGAAGGAGGAGG+AGG 0.520239 5_1:-22009774 Msa0723990:CDS
CGTTGAAGAAGACAGATCTT+CGG 0.520469 5_1:-22009012 Msa0723990:CDS
TAACGCCTGTGAGACTGATT+CGG 0.522705 5_1:-22009894 Msa0723990:CDS
CAGATCTTCGGTAAAACAGC+AGG 0.523931 5_1:-22009000 Msa0723990:intron
GCCGTCGATAGCTGCACAGA+TGG 0.526151 5_1:-22005392 Msa0723990:exon
TCCATCTGTGCAGCTATCGA+CGG 0.533060 5_1:+22005391 None:intergenic
CGAAGATCTGTCTTCTTCAA+CGG 0.533181 5_1:+22009013 None:intergenic
GTTGAGAAGTGTGCTACACC+TGG 0.537623 5_1:-22010088 Msa0723990:CDS
GAAATTGAAATCAGCCTGGT+TGG 0.541512 5_1:-22009818 Msa0723990:CDS
TCTCTCATTATGGATAGTAT+GGG 0.541545 5_1:-22009101 Msa0723990:CDS
CCAAAGTTCATCAGTTGAGG+TGG 0.544431 5_1:-22009729 Msa0723990:CDS
AGTAACTTGCCTCCTAGGTA+AGG 0.548527 5_1:+22009244 None:intergenic
CTCTCATTATGGATAGTATG+GGG 0.551989 5_1:-22009100 Msa0723990:CDS
TGCGGATGATTTGAAGGAGG+AGG 0.552581 5_1:-22009777 Msa0723990:CDS
CGAATTGTTGGCTCAAGAGA+AGG 0.556667 5_1:-22010002 Msa0723990:CDS
AACCAGTTCCTCGTACTATG+AGG 0.558590 5_1:-22009127 Msa0723990:CDS
TTCGGTATTTCCAACACTCA+AGG 0.565830 5_1:-22009869 Msa0723990:CDS
GACCACGATAAGAAGTTGGT+AGG 0.566421 5_1:+22006748 None:intergenic
TGATGATGTTACTGTAGTAA+GGG 0.569285 5_1:-22010813 Msa0723990:five_prime_UTR
ATTCACTGTCATGGGAGAGA+TGG 0.571273 5_1:-22010144 Msa0723990:CDS
TTACCAAAGTTCATCAGTTG+AGG 0.572684 5_1:-22009732 Msa0723990:CDS
GAGAGGATGGAGAAAAGAAG+TGG 0.572851 5_1:-22007917 Msa0723990:CDS
GGAACTGGTTCAGTAGTATG+AGG 0.573216 5_1:+22009140 None:intergenic
ACCAGTGGCAGCAAAACCTA+AGG 0.581842 5_1:-22009363 Msa0723990:CDS
GAATTCCGAATCAGTCTCAC+AGG 0.583363 5_1:+22009889 None:intergenic
TGTGTACAAAGAGACAGAAA+AGG 0.583777 5_1:-22009579 Msa0723990:CDS
GCAAGAAATTGAAATCAGCC+TGG 0.587715 5_1:-22009822 Msa0723990:CDS
ATAAGAAGTTGGTAGGGGTG+TGG 0.595000 5_1:+22006755 None:intergenic
TCCTGCCGATTTCACCAACC+AGG 0.600282 5_1:+22009804 None:intergenic
GCTTAATTATGAACATTCTG+AGG 0.605220 5_1:-22005207 Msa0723990:three_prime_UTR
AGCGGTAATGGTAACGGTAA+CGG 0.605407 5_1:-22009923 Msa0723990:CDS
TGAGGTGGAGAATAAAGAGG+TGG 0.606003 5_1:-22009714 Msa0723990:CDS
CTTTGCGGAAAGAAAATGGA+AGG 0.609059 5_1:-22008800 Msa0723990:intron
GATCTGAGCGGTAATGGTAA+CGG 0.615279 5_1:-22009929 Msa0723990:CDS
GTTGGCTCAAGAGAAGGAGA+TGG 0.615563 5_1:-22009996 Msa0723990:CDS
GGTACAACTACCTTGAGTGT+TGG 0.618926 5_1:+22009859 None:intergenic
GAGGCAAGTTACTTCTAGTG+TGG 0.620877 5_1:-22009234 Msa0723990:CDS
CCTGGACAGGCTCCTTCAAG+GGG 0.624436 5_1:-22008852 Msa0723990:intron
CCACGATAAGAAGTTGGTAG+GGG 0.628287 5_1:+22006750 None:intergenic
TCAAGAGAAGGAGATGGAGA+GGG 0.629762 5_1:-22009990 Msa0723990:CDS
CGTTGAAGCTGAAGATGTGA+AGG 0.632249 5_1:-22009615 Msa0723990:CDS
AGTTGAGGTGGAGAATAAAG+AGG 0.632776 5_1:-22009717 Msa0723990:CDS
TAAATCAGAGAAAGGGAAAG+CGG 0.634535 5_1:-22007858 Msa0723990:intron
ATTACAAGAAGATTGCGGCC+CGG 0.636848 5_1:-22010030 Msa0723990:CDS
ATAGGCCTGCTACCGTTGAG+AGG 0.639643 5_1:-22007934 Msa0723990:intron
AACACATACTACAGACACAC+TGG 0.647033 5_1:+22005328 None:intergenic
GAAATCCGCAGTCCTTACCT+AGG 0.647614 5_1:-22009256 Msa0723990:CDS
CAGATGGAGAAGGTAAAGAG+AGG 0.647901 5_1:-22005376 Msa0723990:three_prime_UTR
GATAGCTGCACAGATGGAGA+AGG 0.648209 5_1:-22005386 Msa0723990:exon
ATCCGCAGTCCTTACCTAGG+AGG 0.650233 5_1:-22009253 Msa0723990:CDS
CCCCTACCAACTTCTTATCG+TGG 0.650660 5_1:-22006750 Msa0723990:CDS
AGCTCATTACAAGAAGATTG+CGG 0.664583 5_1:-22010035 Msa0723990:CDS
GAGGTGGAAAGTGGATCACA+TGG 0.674354 5_1:-22009698 Msa0723990:CDS
TGAAATCGGCAGGAGTCATG+CGG 0.674921 5_1:-22009795 Msa0723990:CDS
TCTCATTATGGATAGTATGG+GGG 0.688469 5_1:-22009099 Msa0723990:CDS
TGTCTGTAGTATGTGTTCCA+AGG 0.690046 5_1:-22005322 Msa0723990:three_prime_UTR
CACTCAAGGTAGTTGTACCG+AGG 0.698782 5_1:-22009855 Msa0723990:CDS
TCATGCGGATGATTTGAAGG+AGG 0.701389 5_1:-22009780 Msa0723990:CDS
AGAGATTTCCTCATAGTACG+AGG 0.729557 5_1:+22009119 None:intergenic
CTGGACAGGCTCCTTCAAGG+GGG 0.743728 5_1:-22008851 Msa0723990:intron
TGCCTCCTAGGTAAGGACTG+CGG 0.746167 5_1:+22009251 None:intergenic
AATAATGGTATAGATCTGAG+CGG 0.762921 5_1:-22009941 Msa0723990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATAATGTTAAATTTTTTAA+AGG - chr5_1:22006482-22006501 Msa0723990:intron 10.0%
!!! AATATATTTTTGTAATGTTT+CGG - chr5_1:22008555-22008574 Msa0723990:intron 10.0%
!!! ACTAATAAAATATTTCTTTT+CGG - chr5_1:22010095-22010114 Msa0723990:CDS 10.0%
!! AAACAACAAAAATGAAAAAT+GGG + chr5_1:22005450-22005469 None:intergenic 15.0%
!! AAAACAACAAAAATGAAAAA+TGG + chr5_1:22005451-22005470 None:intergenic 15.0%
!!! TTGTAAAAATGTTGTTTTTT+TGG - chr5_1:22005648-22005667 Msa0723990:intron 15.0%
!! CTATAAACTAAATATATGAT+TGG + chr5_1:22009048-22009067 None:intergenic 15.0%
!!! TCATATATTTAGTTTATAGA+AGG - chr5_1:22009049-22009068 Msa0723990:CDS 15.0%
!!! CATATATTTAGTTTATAGAA+GGG - chr5_1:22009050-22009069 Msa0723990:CDS 15.0%
!!! ATACCAAAAAGTTATTTTTA+AGG + chr5_1:22009346-22009365 None:intergenic 15.0%
!! TTTACATAATGAACATTATT+TGG + chr5_1:22010235-22010254 None:intergenic 15.0%
!!! AGAGTTTGTAAATTTAATTT+TGG + chr5_1:22010337-22010356 None:intergenic 15.0%
!!! TTTGTATATAAGTTGAATTT+AGG + chr5_1:22010382-22010401 None:intergenic 15.0%
!!! AATATTCTTCTAGTTAAATA+GGG - chr5_1:22010716-22010735 Msa0723990:five_prime_UTR 15.0%
!! AATGATTATGAGTAAAGTAA+AGG + chr5_1:22005244-22005263 None:intergenic 20.0%
!! AAAATGATTAATCTTGATCA+TGG - chr5_1:22005351-22005370 Msa0723990:three_prime_UTR 20.0%
!!! CAAACATTTTAATAAACACA+TGG + chr5_1:22005623-22005642 None:intergenic 20.0%
!!! ATTGTTGTTTGATTGTAAAA+AGG - chr5_1:22005675-22005694 Msa0723990:intron 20.0%
!!! TATTTGATTACCGTTTATTT+TGG - chr5_1:22006510-22006529 Msa0723990:intron 20.0%
!!! ATGATTTTTTACATATATCC+TGG - chr5_1:22007077-22007096 Msa0723990:intron 20.0%
!! TTGTAACGTTAATAACTTAT+GGG + chr5_1:22007494-22007513 None:intergenic 20.0%
!! ATTGTAACGTTAATAACTTA+TGG + chr5_1:22007493-22007512 None:intergenic 20.0%
!! AAGTTATTAACGTTACAATT+TGG - chr5_1:22007287-22007306 Msa0723990:intron 20.0%
!! AAGTTATTAACGTTACAATT+TGG + chr5_1:22007287-22007306 None:intergenic 20.0%
!! ATTGTAACGTTAATAACTTA+TGG - chr5_1:22007493-22007512 Msa0723990:intron 20.0%
!! TTGTAACGTTAATAACTTAT+GGG - chr5_1:22007494-22007513 Msa0723990:intron 20.0%
!! GAAATTTATAAGCAAAAACT+AGG + chr5_1:22007569-22007588 None:intergenic 20.0%
!! CAATTTATATATAGATTCCT+TGG + chr5_1:22007687-22007706 None:intergenic 20.0%
!! TTCAATTCAATACTTAACAA+TGG + chr5_1:22007834-22007853 None:intergenic 20.0%
!!! TCTATTTTGATGAAATTGTA+TGG - chr5_1:22007945-22007964 Msa0723990:intron 20.0%
!! TTCATAAATAATTTCCAAGA+GGG + chr5_1:22007994-22008013 None:intergenic 20.0%
!! ATTCATAAATAATTTCCAAG+AGG + chr5_1:22007995-22008014 None:intergenic 20.0%
!! CTTGGAAATTATTTATGAAT+AGG - chr5_1:22007995-22008014 Msa0723990:intron 20.0%
!! GATGAAAGAAAAAAATAGTT+TGG + chr5_1:22008177-22008196 None:intergenic 20.0%
!!! TGATTTTTTTAAAATCGACT+TGG - chr5_1:22008471-22008490 Msa0723990:intron 20.0%
!!! TAATGTTTCGGTTTAATTTA+GGG - chr5_1:22008567-22008586 Msa0723990:intron 20.0%
!!! CTTCATTTTAGAATCTATTT+TGG + chr5_1:22008670-22008689 None:intergenic 20.0%
!!! AATAGATTCTAAAATGAAGT+TGG - chr5_1:22008671-22008690 Msa0723990:intron 20.0%
!!! ATAGATTCTAAAATGAAGTT+GGG - chr5_1:22008672-22008691 Msa0723990:intron 20.0%
!!! TTTCTAGCTTTATAAATTCA+TGG + chr5_1:22008758-22008777 None:intergenic 20.0%
!!! CAACCTTAAAAATAACTTTT+TGG - chr5_1:22009340-22009359 Msa0723990:CDS 20.0%
!! TTTGATCATTATCTTTAGTA+TGG + chr5_1:22009557-22009576 None:intergenic 20.0%
!! GATTATAATACCCTAAAAAA+GGG - chr5_1:22009608-22009627 Msa0723990:CDS 20.0%
!! ATTATAATACCCTAAAAAAG+GGG - chr5_1:22009609-22009628 Msa0723990:CDS 20.0%
!! AGAACATTATTTAGATTGTT+TGG + chr5_1:22009775-22009794 None:intergenic 20.0%
!! AATGCAACTTATTAAGTAAA+AGG + chr5_1:22009821-22009840 None:intergenic 20.0%
!!! TTTTACTTAATAAGTTGCAT+TGG - chr5_1:22009820-22009839 Msa0723990:CDS 20.0%
!! ATAAGATATTGTCAATATGA+GGG + chr5_1:22010143-22010162 None:intergenic 20.0%
!! AATAAGATATTGTCAATATG+AGG + chr5_1:22010144-22010163 None:intergenic 20.0%
!!! ATTTAATTTTGGTTGAACTT+TGG + chr5_1:22010326-22010345 None:intergenic 20.0%
!! TCAACTTATATACAAAATCA+AGG - chr5_1:22010386-22010405 Msa0723990:intron 20.0%
!!! CAATATTCTTCTAGTTAAAT+AGG - chr5_1:22010715-22010734 Msa0723990:five_prime_UTR 20.0%
! TAGTAAGGGAAAAAAAAGAA+GGG - chr5_1:22005148-22005167 Msa0723990:three_prime_UTR 25.0%
! TATAAAAAAACATGTGCATG+TGG + chr5_1:22005205-22005224 None:intergenic 25.0%
!! TATGTCTTTCCAACAATTTT+GGG - chr5_1:22005389-22005408 Msa0723990:exon 25.0%
! TTGTGAATTTCTTCAAGATA+AGG - chr5_1:22005420-22005439 Msa0723990:intron 25.0%
!!! TTGTAAATCTGTTTTGTTCT+TGG - chr5_1:22005506-22005525 Msa0723990:intron 25.0%
!!! TGTAAATCTGTTTTGTTCTT+GGG - chr5_1:22005507-22005526 Msa0723990:intron 25.0%
!!! ATTGTTGTTGTTTGATTAGA+TGG - chr5_1:22005717-22005736 Msa0723990:intron 25.0%
!!! TTGTTGTTGTTTGATTAGAT+GGG - chr5_1:22005718-22005737 Msa0723990:intron 25.0%
! ATTCTCTCCAAATAAGTATT+TGG - chr5_1:22005831-22005850 Msa0723990:intron 25.0%
! ACTTCTTCCAAATACTTATT+TGG + chr5_1:22005841-22005860 None:intergenic 25.0%
!! ATTATTTTCTTCTGATCTGA+AGG + chr5_1:22005992-22006011 None:intergenic 25.0%
! TTCAGATCAGAAGAAAATAA+TGG - chr5_1:22005991-22006010 Msa0723990:intron 25.0%
! TGAAGAAAAAGATGTGAAAT+TGG - chr5_1:22006401-22006420 Msa0723990:intron 25.0%
!!! GGTTTGCTTTATTTCATATT+TGG - chr5_1:22006443-22006462 Msa0723990:intron 25.0%
! GATAACCTATCCAAAATAAA+CGG + chr5_1:22006523-22006542 None:intergenic 25.0%
! GTTATATATGGTGGTAAATT+TGG - chr5_1:22007005-22007024 Msa0723990:intron 25.0%
! TGGAAGGTAAATTATTGAAT+TGG - chr5_1:22007163-22007182 Msa0723990:intron 25.0%
!!! TGGCACTTTTATTGTTTTAT+AGG - chr5_1:22007183-22007202 Msa0723990:intron 25.0%
!!! ATGTTTCATGTACTAGTTTT+TGG - chr5_1:22007209-22007228 Msa0723990:intron 25.0%
!!! TGTTTCATGTACTAGTTTTT+GGG - chr5_1:22007210-22007229 Msa0723990:intron 25.0%
! TTTGGGCTTAATTAATGATT+TGG - chr5_1:22007227-22007246 Msa0723990:intron 25.0%
!!! GTTATTTGTTGGTTACATTT+TGG - chr5_1:22007258-22007277 Msa0723990:intron 25.0%
! TGTAACCAACAAATAACTTA+AGG - chr5_1:22007524-22007543 Msa0723990:intron 25.0%
! GTAACCAACAAATAACTTAA+GGG - chr5_1:22007525-22007544 Msa0723990:intron 25.0%
!!! AAGAAGGTTTTTTAATCGTA+TGG - chr5_1:22007619-22007638 Msa0723990:intron 25.0%
! GTACAATACATTTCATCTAA+AGG + chr5_1:22007788-22007807 None:intergenic 25.0%
! AATGTATTGTACTTCGTAAA+CGG - chr5_1:22007796-22007815 Msa0723990:intron 25.0%
!!! TCTGATTTAATGTCACTTTT+CGG + chr5_1:22008078-22008097 None:intergenic 25.0%
! AGAAGAAAACTACAAATAAG+GGG + chr5_1:22008152-22008171 None:intergenic 25.0%
! CAGAAGAAAACTACAAATAA+GGG + chr5_1:22008153-22008172 None:intergenic 25.0%
! TCAGAAGAAAACTACAAATA+AGG + chr5_1:22008154-22008173 None:intergenic 25.0%
!!! TTTTTCCTCTATTTTTCTTG+AGG + chr5_1:22008209-22008228 None:intergenic 25.0%
!!! GTCATTTTAAGAGAAAATCA+CGG + chr5_1:22008295-22008314 None:intergenic 25.0%
!! TGATTTTCTCTTAAAATGAC+TGG - chr5_1:22008295-22008314 Msa0723990:intron 25.0%
!!! GAGATGATATTTTGAAAGAT+AGG - chr5_1:22008378-22008397 Msa0723990:intron 25.0%
! TCAATGATACTTATTGTGTT+TGG - chr5_1:22008413-22008432 Msa0723990:intron 25.0%
! CAATGATACTTATTGTGTTT+GGG - chr5_1:22008414-22008433 Msa0723990:intron 25.0%
! AATGATACTTATTGTGTTTG+GGG - chr5_1:22008415-22008434 Msa0723990:intron 25.0%
!! GTAATGTTTCGGTTTAATTT+AGG - chr5_1:22008566-22008585 Msa0723990:intron 25.0%
! GAATTTATAAAGCTAGAAAC+TGG - chr5_1:22008759-22008778 Msa0723990:intron 25.0%
! TTTCGTAAAGAACGAATATT+TGG + chr5_1:22008969-22008988 None:intergenic 25.0%
! TTACTAACATATCTTAACAC+AGG - chr5_1:22009124-22009143 Msa0723990:CDS 25.0%
! AAAGCTAAAGAATGATTTCA+AGG - chr5_1:22009169-22009188 Msa0723990:CDS 25.0%
! ATTATCAGTTGTTAAACACA+AGG + chr5_1:22009453-22009472 None:intergenic 25.0%
! TGTGTTTAACAACTGATAAT+TGG - chr5_1:22009453-22009472 Msa0723990:intron 25.0%
! TACAGTTTATCAAGATTTCT+AGG - chr5_1:22009586-22009605 Msa0723990:CDS 25.0%
! GGATTATAATACCCTAAAAA+AGG - chr5_1:22009607-22009626 Msa0723990:CDS 25.0%
!! TGTGAAAATTTTCATACAAG+AGG - chr5_1:22009648-22009667 Msa0723990:CDS 25.0%
!! GTGAAAATTTTCATACAAGA+GGG - chr5_1:22009649-22009668 Msa0723990:CDS 25.0%
! CAACTTATTAAGTAAAAGGA+GGG + chr5_1:22009817-22009836 None:intergenic 25.0%
!!! TGCATTGGTCTTATTAATTA+CGG - chr5_1:22009835-22009854 Msa0723990:CDS 25.0%
!! TATCACTGAATAAAAAGCAT+AGG - chr5_1:22009979-22009998 Msa0723990:CDS 25.0%
!! TAAAAAGCATAGGTTGAATA+TGG - chr5_1:22009989-22010008 Msa0723990:CDS 25.0%
!! AAAATATTTCTTTTCGGCAA+AGG - chr5_1:22010101-22010120 Msa0723990:CDS 25.0%
! TTAATAATGTTGCGTCTAAA+AGG - chr5_1:22010190-22010209 Msa0723990:CDS 25.0%
!!! ATTTTCTAGTTCAAACTTCA+TGG + chr5_1:22010811-22010830 None:intergenic 25.0%
! ATGATGATGTTACTGTAGTA+AGG - chr5_1:22005133-22005152 Msa0723990:three_prime_UTR 30.0%
! TGATGATGTTACTGTAGTAA+GGG - chr5_1:22005134-22005153 Msa0723990:three_prime_UTR 30.0%
GTAGTAAGGGAAAAAAAAGA+AGG - chr5_1:22005147-22005166 Msa0723990:three_prime_UTR 30.0%
!! CATGTGGATTTTAAAAGAGT+GGG + chr5_1:22005189-22005208 None:intergenic 30.0%
! CTATGTCTTTCCAACAATTT+TGG - chr5_1:22005388-22005407 Msa0723990:exon 30.0%
!! TTGATAATGATTCACTGTCA+TGG - chr5_1:22005794-22005813 Msa0723990:intron 30.0%
! TGATAATGATTCACTGTCAT+GGG - chr5_1:22005795-22005814 Msa0723990:intron 30.0%
AATAATGGTATAGATCTGAG+CGG - chr5_1:22006006-22006025 Msa0723990:intron 30.0%
AAGCAAACCTTAGATTTCTT+TGG + chr5_1:22006432-22006451 None:intergenic 30.0%
!!! GATTACCGTTTATTTTGGAT+AGG - chr5_1:22006515-22006534 Msa0723990:intron 30.0%
! CATTATTTTCCCTATTCACA+GGG + chr5_1:22006545-22006564 None:intergenic 30.0%
!!! CACTGGTTTCTTTTTTGTTT+TGG + chr5_1:22006571-22006590 None:intergenic 30.0%
CAAAACAAAAAAGAAACCAG+TGG - chr5_1:22006569-22006588 Msa0723990:intron 30.0%
!!! ATTTCCCTTTTTAGTTGAAG+CGG + chr5_1:22006676-22006695 None:intergenic 30.0%
TATGAGGAAATCTCTCATTA+TGG - chr5_1:22006836-22006855 Msa0723990:intron 30.0%
ATCTCTCATTATGGATAGTA+TGG - chr5_1:22006845-22006864 Msa0723990:intron 30.0%
TCTCTCATTATGGATAGTAT+GGG - chr5_1:22006846-22006865 Msa0723990:intron 30.0%
CTGCAGTTCATTGTTATATA+TGG - chr5_1:22006993-22007012 Msa0723990:intron 30.0%
CAGTTCATTGTTATATATGG+TGG - chr5_1:22006996-22007015 Msa0723990:intron 30.0%
! TTTTTACATATATCCTGGAC+AGG - chr5_1:22007082-22007101 Msa0723990:intron 30.0%
GTAACCAACAAATAACTCAA+GGG + chr5_1:22007254-22007273 None:intergenic 30.0%
TGTAACCAACAAATAACTCA+AGG + chr5_1:22007255-22007274 None:intergenic 30.0%
GCTAACAGATACTAACTTAA+GGG + chr5_1:22007314-22007333 None:intergenic 30.0%
! CTTTTGCCAAAACGTTAAAT+AGG - chr5_1:22007356-22007375 Msa0723990:intron 30.0%
TTGACGAAAGATGACTTAAA+GGG - chr5_1:22007465-22007484 Msa0723990:intron 30.0%
ACTAGGCTTAATTAATGATG+TGG + chr5_1:22007552-22007571 None:intergenic 30.0%
TCTTATCATATGCTTTGTCA+AGG + chr5_1:22007900-22007919 None:intergenic 30.0%
!!! TGATTTAATGTCACTTTTCG+GGG + chr5_1:22008076-22008095 None:intergenic 30.0%
!!! CTGATTTAATGTCACTTTTC+GGG + chr5_1:22008077-22008096 None:intergenic 30.0%
AGTGACATTAAATCAGAGAA+AGG - chr5_1:22008081-22008100 Msa0723990:intron 30.0%
GTGACATTAAATCAGAGAAA+GGG - chr5_1:22008082-22008101 Msa0723990:intron 30.0%
GAAGAAAACTACAAATAAGG+GGG + chr5_1:22008151-22008170 None:intergenic 30.0%
GGAAAAACCTAATACAAAAG+TGG - chr5_1:22008222-22008241 Msa0723990:intron 30.0%
!! CTTTCTACCACTTTTGTATT+AGG + chr5_1:22008232-22008251 None:intergenic 30.0%
!! AGAGTACCTTCAATTTTGTT+TGG + chr5_1:22008264-22008283 None:intergenic 30.0%
!! TGATATTTTGAAAGATAGGC+AGG - chr5_1:22008382-22008401 Msa0723990:intron 30.0%
!! GATATTTTGAAAGATAGGCA+GGG - chr5_1:22008383-22008402 Msa0723990:intron 30.0%
ATGATACTTATTGTGTTTGG+GGG - chr5_1:22008416-22008435 Msa0723990:intron 30.0%
! ACTTGGTTAAAACTGTGTTT+TGG - chr5_1:22008488-22008507 Msa0723990:intron 30.0%
! TTATAGCTTTTGCTTAACAG+TGG - chr5_1:22008697-22008716 Msa0723990:intron 30.0%
AAACTACTATTCATCACTTC+TGG - chr5_1:22008900-22008919 Msa0723990:intron 30.0%
!! ATATATGATTGGTTTCACTG+TGG + chr5_1:22009037-22009056 None:intergenic 30.0%
! GGAAAGTTATATGTTGCTTA+AGG - chr5_1:22009307-22009326 Msa0723990:CDS 30.0%
AACAACTGATAATTGGAGTT+TGG - chr5_1:22009460-22009479 Msa0723990:intron 30.0%
GCAACTTATTAAGTAAAAGG+AGG + chr5_1:22009818-22009837 None:intergenic 30.0%
TTGAGTGAAATTCATTCATG+CGG + chr5_1:22009890-22009909 None:intergenic 30.0%
TAGACGCAACATTATTAACA+TGG + chr5_1:22010188-22010207 None:intergenic 30.0%
!!! AGAGTGAGTTGATTGATTTT+TGG + chr5_1:22010280-22010299 None:intergenic 30.0%
!! ATACAAAATCAAGGTGTTGT+TGG - chr5_1:22010395-22010414 Msa0723990:intron 30.0%
!! TCTAGTTTAGTTTGCAATAG+TGG - chr5_1:22010682-22010701 Msa0723990:five_prime_UTR 30.0%
GCTTAATTATGAACATTCTG+AGG - chr5_1:22010740-22010759 Msa0723990:five_prime_UTR 30.0%
TAGTTCAAACTTCATGGAAT+GGG + chr5_1:22010805-22010824 None:intergenic 30.0%
CATCATCATTTGTCTCTTTG+TGG + chr5_1:22005122-22005141 None:intergenic 35.0%
!! GCATGTGGATTTTAAAAGAG+TGG + chr5_1:22005190-22005209 None:intergenic 35.0%
AAGCTACAACCCAAAATTGT+TGG + chr5_1:22005401-22005420 None:intergenic 35.0%
!! AATCTGTTTTGTTCTTGGGT+TGG - chr5_1:22005511-22005530 Msa0723990:intron 35.0%
!! TTGCAAGTGTCTGTTTCTTT+TGG - chr5_1:22005766-22005785 Msa0723990:intron 35.0%
AGCTCATTACAAGAAGATTG+CGG - chr5_1:22005912-22005931 Msa0723990:intron 35.0%
TTACCAAAGTTCATCAGTTG+AGG - chr5_1:22006215-22006234 Msa0723990:intron 35.0%
! TTTATGCACACGTCTTTTTC+AGG + chr5_1:22006294-22006313 None:intergenic 35.0%
TGTGTACAAAGAGACAGAAA+AGG - chr5_1:22006368-22006387 Msa0723990:intron 35.0%
GGATCATCCAAAGAAATCTA+AGG - chr5_1:22006422-22006441 Msa0723990:intron 35.0%
ATAGGTTATCCCTGTGAATA+GGG - chr5_1:22006533-22006552 Msa0723990:intron 35.0%
! GCATTATTTTCCCTATTCAC+AGG + chr5_1:22006546-22006565 None:intergenic 35.0%
!!! GATGTAGGCTTTGAACTTTT+CGG + chr5_1:22006627-22006646 None:intergenic 35.0%
ATCAGCTCCAACTAAAACAT+TGG - chr5_1:22006644-22006663 Msa0723990:intron 35.0%
CTCTCATTATGGATAGTATG+GGG - chr5_1:22006847-22006866 Msa0723990:intron 35.0%
TCTCATTATGGATAGTATGG+GGG - chr5_1:22006848-22006867 Msa0723990:intron 35.0%
! TTGGCTGGTTAAAATTCTTC+TGG + chr5_1:22006908-22006927 None:intergenic 35.0%
! TCTTCTTCAACGGAAGTTTT+TGG + chr5_1:22006927-22006946 None:intergenic 35.0%
TTCCAACTTCTTCAACTTTG+CGG - chr5_1:22007132-22007151 Msa0723990:intron 35.0%
TCAACTTTGCGGAAAGAAAA+TGG - chr5_1:22007143-22007162 Msa0723990:intron 35.0%
GGCTAACAGATACTAACTTA+AGG + chr5_1:22007315-22007334 None:intergenic 35.0%
! ACTGATGGTGAGGATTTATT+TGG + chr5_1:22007336-22007355 None:intergenic 35.0%
! CATGTGCCTATTTAACGTTT+TGG + chr5_1:22007365-22007384 None:intergenic 35.0%
AACCATTAAGCCAATGTCTA+AGG + chr5_1:22007423-22007442 None:intergenic 35.0%
GTTGACGAAAGATGACTTAA+AGG - chr5_1:22007464-22007483 Msa0723990:intron 35.0%
TGGTCCCTTAAGTTATTTGT+TGG + chr5_1:22007532-22007551 None:intergenic 35.0%
TCTTAGCAACACATTGAAGA+AGG - chr5_1:22007603-22007622 Msa0723990:intron 35.0%
CTTGGTTGAAGTTCTTGAAA+AGG + chr5_1:22007669-22007688 None:intergenic 35.0%
!! CTTTTCAAGAACTTCAACCA+AGG - chr5_1:22007667-22007686 Msa0723990:intron 35.0%
CAAGTCGCAAATGATATTGT+TGG + chr5_1:22007753-22007772 None:intergenic 35.0%
! AATTGAATCTGCTTGCTAGT+TGG - chr5_1:22007847-22007866 Msa0723990:intron 35.0%
ATATGCTTTGTCAAGGAAAG+AGG + chr5_1:22007893-22007912 None:intergenic 35.0%
! TTTTTGTATGATGACCCTCT+TGG - chr5_1:22007977-22007996 Msa0723990:intron 35.0%
TAAATCAGAGAAAGGGAAAG+CGG - chr5_1:22008089-22008108 Msa0723990:intron 35.0%
TCAGTCCTCAAGAAAAATAG+AGG - chr5_1:22008201-22008220 Msa0723990:intron 35.0%
CATTTCCTATATTCCTGTGT+TGG - chr5_1:22008318-22008337 Msa0723990:intron 35.0%
GGAGACATAAAAGTGATTGT+AGG - chr5_1:22008588-22008607 Msa0723990:intron 35.0%
! AAAAGTGATTGTAGGAGCAT+AGG - chr5_1:22008596-22008615 Msa0723990:intron 35.0%
!! TAGGAGCATAGGATTGATTT+TGG - chr5_1:22008607-22008626 Msa0723990:intron 35.0%
CAAAATCCAAACGCACTTTA+TGG - chr5_1:22008820-22008839 Msa0723990:CDS 35.0%
ATTGAACCATAAAGTGCGTT+TGG + chr5_1:22008829-22008848 None:intergenic 35.0%
CTAACATATCTTAACACAGG+AGG - chr5_1:22009127-22009146 Msa0723990:CDS 35.0%
! TTTTGACCACGATAAGAAGT+TGG + chr5_1:22009206-22009225 None:intergenic 35.0%
TTCCATATTCACAGCTGAAA+TGG - chr5_1:22009286-22009305 Msa0723990:CDS 35.0%
TTCCATTTCAGCTGTGAATA+TGG + chr5_1:22009291-22009310 None:intergenic 35.0%
AACTGATAATTGGAGTTTGG+TGG - chr5_1:22009463-22009482 Msa0723990:intron 35.0%
ACTGATAATTGGAGTTTGGT+GGG - chr5_1:22009464-22009483 Msa0723990:intron 35.0%
AATACCCTAAAAAAGGGGAA+TGG - chr5_1:22009614-22009633 Msa0723990:CDS 35.0%
!!! CAATCCATTCCCCTTTTTTA+GGG + chr5_1:22009621-22009640 None:intergenic 35.0%
AATAGCATTGTTTAGGGGAT+TGG + chr5_1:22009734-22009753 None:intergenic 35.0%
AGGTCAATAGCATTGTTTAG+GGG + chr5_1:22009739-22009758 None:intergenic 35.0%
GAGGTCAATAGCATTGTTTA+GGG + chr5_1:22009740-22009759 None:intergenic 35.0%
AGAGGTCAATAGCATTGTTT+AGG + chr5_1:22009741-22009760 None:intergenic 35.0%
!! TGTTTGGTGTGATATAGTAG+AGG + chr5_1:22009759-22009778 None:intergenic 35.0%
!! TGGTCTTATTAATTACGGAG+TGG - chr5_1:22009840-22009859 Msa0723990:CDS 35.0%
!! GGTCTTATTAATTACGGAGT+GGG - chr5_1:22009841-22009860 Msa0723990:CDS 35.0%
!! GCCTCGTATTTTATTTAGTC+GGG + chr5_1:22009867-22009886 None:intergenic 35.0%
!! GGCCTCGTATTTTATTTAGT+CGG + chr5_1:22009868-22009887 None:intergenic 35.0%
TGAGTGAAATTCATTCATGC+GGG + chr5_1:22009889-22009908 None:intergenic 35.0%
! AGCATAGGTTGAATATGGTT+TGG - chr5_1:22009994-22010013 Msa0723990:CDS 35.0%
CTCTAATCCAAACATACACT+AGG - chr5_1:22010353-22010372 Msa0723990:intron 35.0%
TAGGAAACCTAGTGTATGTT+TGG + chr5_1:22010363-22010382 None:intergenic 35.0%
TTCATTGTGCTTACACATAG+TGG - chr5_1:22010425-22010444 Msa0723990:intron 35.0%
AACACAATAAGGCCTTAGAA+TGG + chr5_1:22010471-22010490 None:intergenic 35.0%
GAACTCAATGGAACACAATA+AGG + chr5_1:22010482-22010501 None:intergenic 35.0%
! TTTTCATGACTACTCATGCA+GGG - chr5_1:22010515-22010534 Msa0723990:intron 35.0%
AGAGAGGAGTAAATGAATAG+AGG - chr5_1:22010587-22010606 Msa0723990:five_prime_UTR 35.0%
CTAGTTCAAACTTCATGGAA+TGG + chr5_1:22010806-22010825 None:intergenic 35.0%
TTGTCTCTTTGTGGTACTTG+AGG + chr5_1:22005113-22005132 None:intergenic 40.0%
CTTCTCTTGAGCCAACAATT+CGG + chr5_1:22005947-22005966 None:intergenic 40.0%
!! TGTGAGACTGATTCGGAATT+CGG - chr5_1:22006060-22006079 Msa0723990:intron 40.0%
TTCGGTATTTCCAACACTCA+AGG - chr5_1:22006078-22006097 Msa0723990:intron 40.0%
TTCTTGCTTATCGCATTCCT+CGG + chr5_1:22006112-22006131 None:intergenic 40.0%
GCAAGAAATTGAAATCAGCC+TGG - chr5_1:22006125-22006144 Msa0723990:intron 40.0%
GAAATTGAAATCAGCCTGGT+TGG - chr5_1:22006129-22006148 Msa0723990:intron 40.0%
AGTTGAGGTGGAGAATAAAG+AGG - chr5_1:22006230-22006249 Msa0723990:intron 40.0%
GAGAATAAAGAGGTGGAAAG+TGG - chr5_1:22006240-22006259 Msa0723990:intron 40.0%
GATAGGTTATCCCTGTGAAT+AGG - chr5_1:22006532-22006551 Msa0723990:intron 40.0%
! GTCGAAATTTGAGATGCCTT+AGG + chr5_1:22006603-22006622 None:intergenic 40.0%
!!! GTTTTAGTTGGAGCTGATGT+AGG + chr5_1:22006642-22006661 None:intergenic 40.0%
!!! GCAGATGCCAATGTTTTAGT+TGG + chr5_1:22006654-22006673 None:intergenic 40.0%
! ATCTGCCGCTTCAACTAAAA+AGG - chr5_1:22006668-22006687 Msa0723990:intron 40.0%
! TCTGCCGCTTCAACTAAAAA+GGG - chr5_1:22006669-22006688 Msa0723990:intron 40.0%
CATAGACATGTGCAAAGATC+TGG + chr5_1:22006757-22006776 None:intergenic 40.0%
TTGCACATGTCTATGAGCTT+AGG - chr5_1:22006762-22006781 Msa0723990:CDS 40.0%
AGAGATTTCCTCATAGTACG+AGG + chr5_1:22006831-22006850 None:intergenic 40.0%
TATGGATAGTATGGGGGATA+AGG - chr5_1:22006854-22006873 Msa0723990:intron 40.0%
CGAAGATCTGTCTTCTTCAA+CGG + chr5_1:22006937-22006956 None:intergenic 40.0%
CGTTGAAGAAGACAGATCTT+CGG - chr5_1:22006935-22006954 Msa0723990:intron 40.0%
TCGGTAAAACAGCAGGTAAT+TGG - chr5_1:22006954-22006973 Msa0723990:intron 40.0%
TTCCGCAAAGTTGAAGAAGT+TGG + chr5_1:22007137-22007156 None:intergenic 40.0%
CTTTGCGGAAAGAAAATGGA+AGG - chr5_1:22007147-22007166 Msa0723990:intron 40.0%
TGGTCCCTTGAGTTATTTGT+TGG - chr5_1:22007247-22007266 Msa0723990:intron 40.0%
!! ACGTTTTGGCAAAAGACTGA+TGG + chr5_1:22007351-22007370 None:intergenic 40.0%
TGTGTATCCACCTTAGACAT+TGG - chr5_1:22007410-22007429 Msa0723990:intron 40.0%
CATTAAGCCAATGTCTAAGG+TGG + chr5_1:22007420-22007439 None:intergenic 40.0%
!! CACCTTAGACATTGGCTTAA+TGG - chr5_1:22007418-22007437 Msa0723990:intron 40.0%
!!! TGGCTTAATGGTTTTGACGA+TGG - chr5_1:22007430-22007449 Msa0723990:intron 40.0%
!!! GGCTTAATGGTTTTGACGAT+GGG - chr5_1:22007431-22007450 Msa0723990:intron 40.0%
!!! GCTTAATGGTTTTGACGATG+GGG - chr5_1:22007432-22007451 Msa0723990:intron 40.0%
!!! CTTAATGGTTTTGACGATGG+GGG - chr5_1:22007433-22007452 Msa0723990:intron 40.0%
! TCTTTTCTCCATCCTCTCAA+CGG + chr5_1:22008028-22008047 None:intergenic 40.0%
!! TGGAAGTGTTGTACGAACTT+TGG - chr5_1:22008050-22008069 Msa0723990:intron 40.0%
GCGTCTCCAAACAAAATTGA+AGG - chr5_1:22008255-22008274 Msa0723990:intron 40.0%
TAAGAGAAAATCACGGAACG+AGG + chr5_1:22008288-22008307 None:intergenic 40.0%
TGAAGCCAACACAGGAATAT+AGG + chr5_1:22008326-22008345 None:intergenic 40.0%
CATCACTTCTGGTCAAATTG+AGG - chr5_1:22008911-22008930 Msa0723990:intron 40.0%
AGTTTATAGAAGGGCTGATC+TGG - chr5_1:22009059-22009078 Msa0723990:CDS 40.0%
GTTTATAGAAGGGCTGATCT+GGG - chr5_1:22009060-22009079 Msa0723990:CDS 40.0%
!! ACCACGATAAGAAGTTGGTA+GGG + chr5_1:22009201-22009220 None:intergenic 40.0%
ATCAAAAAGTCGCGCAGAAA+AGG - chr5_1:22009229-22009248 Msa0723990:CDS 40.0%
ATAACCAAAACAAGACAGCC+AGG + chr5_1:22009491-22009510 None:intergenic 40.0%
!!! CCAATCCATTCCCCTTTTTT+AGG + chr5_1:22009622-22009641 None:intergenic 40.0%
CCTAAAAAAGGGGAATGGAT+TGG - chr5_1:22009619-22009638 Msa0723990:CDS 40.0%
GCCCGACTAAATAAAATACG+AGG - chr5_1:22009863-22009882 Msa0723990:CDS 40.0%
ATTCAGTGATAGTCGAGTCA+AGG + chr5_1:22009970-22009989 None:intergenic 40.0%
GGTATATGTTGCGACATGTT+TGG - chr5_1:22010015-22010034 Msa0723990:CDS 40.0%
AGGACATTGTCAGAACTCAA+TGG + chr5_1:22010494-22010513 None:intergenic 40.0%
GCATGAGTAGTCATGAAAAC+AGG + chr5_1:22010514-22010533 None:intergenic 40.0%
! GTTTTCATGACTACTCATGC+AGG - chr5_1:22010514-22010533 Msa0723990:intron 40.0%
AACACATACTACAGACACAC+TGG + chr5_1:22010622-22010641 None:intergenic 40.0%
TGTCTGTAGTATGTGTTCCA+AGG - chr5_1:22010625-22010644 Msa0723990:five_prime_UTR 40.0%
!! TGTCATCATTGACTTCTCCT+TGG + chr5_1:22010645-22010664 None:intergenic 40.0%
ATTCACTGTCATGGGAGAGA+TGG - chr5_1:22005803-22005822 Msa0723990:intron 45.0%
! TTCTTCTGTGCTACTGATCC+AGG + chr5_1:22005880-22005899 None:intergenic 45.0%
ATTACAAGAAGATTGCGGCC+CGG - chr5_1:22005917-22005936 Msa0723990:intron 45.0%
!! CGAATTGTTGGCTCAAGAGA+AGG - chr5_1:22005945-22005964 Msa0723990:intron 45.0%
TCAAGAGAAGGAGATGGAGA+GGG - chr5_1:22005957-22005976 Msa0723990:intron 45.0%
GGTATAGATCTGAGCGGTAA+TGG - chr5_1:22006012-22006031 Msa0723990:intron 45.0%
! GATCTGAGCGGTAATGGTAA+CGG - chr5_1:22006018-22006037 Msa0723990:intron 45.0%
!! AGCGGTAATGGTAACGGTAA+CGG - chr5_1:22006024-22006043 Msa0723990:intron 45.0%
TAACGCCTGTGAGACTGATT+CGG - chr5_1:22006053-22006072 Msa0723990:intron 45.0%
GAATTCCGAATCAGTCTCAC+AGG + chr5_1:22006061-22006080 None:intergenic 45.0%
GGTACAACTACCTTGAGTGT+TGG + chr5_1:22006091-22006110 None:intergenic 45.0%
!! ATCAGCCTGGTTGGTGAAAT+CGG - chr5_1:22006138-22006157 Msa0723990:intron 45.0%
GAGTCATGCGGATGATTTGA+AGG - chr5_1:22006164-22006183 Msa0723990:intron 45.0%
TCATGCGGATGATTTGAAGG+AGG - chr5_1:22006167-22006186 Msa0723990:intron 45.0%
CCACCTCAACTGATGAACTT+TGG + chr5_1:22006221-22006240 None:intergenic 45.0%
CCAAAGTTCATCAGTTGAGG+TGG - chr5_1:22006218-22006237 Msa0723990:intron 45.0%
TGAGGTGGAGAATAAAGAGG+TGG - chr5_1:22006233-22006252 Msa0723990:intron 45.0%
CGTTGAAGCTGAAGATGTGA+AGG - chr5_1:22006332-22006351 Msa0723990:intron 45.0%
! AGTAACTTGCCTCCTAGGTA+AGG + chr5_1:22006706-22006725 None:intergenic 45.0%
! CTAGAAGTAACTTGCCTCCT+AGG + chr5_1:22006711-22006730 None:intergenic 45.0%
GAGGCAAGTTACTTCTAGTG+TGG - chr5_1:22006713-22006732 Msa0723990:intron 45.0%
GTAGTATGAGGAACTGGATC+AGG + chr5_1:22006798-22006817 None:intergenic 45.0%
GGTTCAGTAGTATGAGGAAC+TGG + chr5_1:22006804-22006823 None:intergenic 45.0%
! GGAACTGGTTCAGTAGTATG+AGG + chr5_1:22006810-22006829 None:intergenic 45.0%
AACCAGTTCCTCGTACTATG+AGG - chr5_1:22006820-22006839 Msa0723990:intron 45.0%
TTCCTCATAGTACGAGGAAC+TGG + chr5_1:22006825-22006844 None:intergenic 45.0%
!!! CTTCAACGGAAGTTTTTGGC+TGG + chr5_1:22006923-22006942 None:intergenic 45.0%
CAGATCTTCGGTAAAACAGC+AGG - chr5_1:22006947-22006966 Msa0723990:intron 45.0%
! TTGGCAAAAGACTGATGGTG+AGG + chr5_1:22007346-22007365 None:intergenic 45.0%
GAGAGGATGGAGAAAAGAAG+TGG - chr5_1:22008030-22008049 Msa0723990:intron 45.0%
CACTTAAGTGAAGCCAACAC+AGG + chr5_1:22008334-22008353 None:intergenic 45.0%
AGTGTGCATTTGTCTCACAG+CGG + chr5_1:22008872-22008891 None:intergenic 45.0%
!! ATAAGAAGTTGGTAGGGGTG+TGG + chr5_1:22009195-22009214 None:intergenic 45.0%
!! CCACGATAAGAAGTTGGTAG+GGG + chr5_1:22009200-22009219 None:intergenic 45.0%
! GACCACGATAAGAAGTTGGT+AGG + chr5_1:22009202-22009221 None:intergenic 45.0%
ACCACCAACACATGCTCATT+TGG + chr5_1:22009534-22009553 None:intergenic 45.0%
CCTTAGAATGGAGCACAATG+TGG + chr5_1:22010459-22010478 None:intergenic 45.0%
CCACATTGTGCTCCATTCTA+AGG - chr5_1:22010456-22010475 Msa0723990:intron 45.0%
CAGATGGAGAAGGTAAAGAG+AGG - chr5_1:22010571-22010590 Msa0723990:five_prime_UTR 45.0%
! GTTGAGAAGTGTGCTACACC+TGG - chr5_1:22005859-22005878 Msa0723990:intron 50.0%
AGCCAACAATTCGGCTTTCC+GGG + chr5_1:22005938-22005957 None:intergenic 50.0%
GAGCCAACAATTCGGCTTTC+CGG + chr5_1:22005939-22005958 None:intergenic 50.0%
! GTTGGCTCAAGAGAAGGAGA+TGG - chr5_1:22005951-22005970 Msa0723990:intron 50.0%
CTCAAGAGAAGGAGATGGAG+AGG - chr5_1:22005956-22005975 Msa0723990:intron 50.0%
CACTCAAGGTAGTTGTACCG+AGG - chr5_1:22006092-22006111 Msa0723990:intron 50.0%
TGAAATCGGCAGGAGTCATG+CGG - chr5_1:22006152-22006171 Msa0723990:intron 50.0%
TGCGGATGATTTGAAGGAGG+AGG - chr5_1:22006170-22006189 Msa0723990:intron 50.0%
GGATGATTTGAAGGAGGAGG+AGG - chr5_1:22006173-22006192 Msa0723990:intron 50.0%
GAGGTGGAAAGTGGATCACA+TGG - chr5_1:22006249-22006268 Msa0723990:intron 50.0%
ACCAGTGGCAGCAAAACCTA+AGG - chr5_1:22006584-22006603 Msa0723990:intron 50.0%
GAAATCCGCAGTCCTTACCT+AGG - chr5_1:22006691-22006710 Msa0723990:intron 50.0%
GGAACTGGATCAGGCTTACT+TGG + chr5_1:22006789-22006808 None:intergenic 50.0%
TCAGAGAAAGGGAAAGCGGT+AGG - chr5_1:22008093-22008112 Msa0723990:intron 50.0%
GGAGCTTCTTGCTCAAGTCA+CGG - chr5_1:22008780-22008799 Msa0723990:intron 50.0%
! GGCTGATCTGGGATATGAGA+TGG - chr5_1:22009071-22009090 Msa0723990:CDS 50.0%
CCCCTACCAACTTCTTATCG+TGG - chr5_1:22009197-22009216 Msa0723990:CDS 50.0%
! AATTGGAGTTTGGTGGGACC+TGG - chr5_1:22009470-22009489 Msa0723990:intron 50.0%
CCAACACATGCTCATTTGGC+AGG + chr5_1:22009530-22009549 None:intergenic 50.0%
CCTGCCAAATGAGCATGTGT+TGG - chr5_1:22009527-22009546 Msa0723990:CDS 50.0%
GCCAAATGAGCATGTGTTGG+TGG - chr5_1:22009530-22009549 Msa0723990:CDS 50.0%
TCCATCTGTGCAGCTATCGA+CGG + chr5_1:22010559-22010578 None:intergenic 50.0%
GATAGCTGCACAGATGGAGA+AGG - chr5_1:22010561-22010580 Msa0723990:five_prime_UTR 50.0%
AGAAGGAGATGGAGAGGGAG+AGG - chr5_1:22005962-22005981 Msa0723990:intron 55.0%
GAAGGAGATGGAGAGGGAGA+GGG - chr5_1:22005963-22005982 Msa0723990:intron 55.0%
!! TCCTGCCGATTTCACCAACC+AGG + chr5_1:22006146-22006165 None:intergenic 55.0%
GAAGGAGGAGGAGGAAGTTG+CGG - chr5_1:22006182-22006201 Msa0723990:intron 55.0%
GGAGGAGGAAGTTGCGGTTT+CGG - chr5_1:22006188-22006207 Msa0723990:intron 55.0%
! GCCTTAGGTTTTGCTGCCAC+TGG + chr5_1:22006588-22006607 None:intergenic 55.0%
ATCCGCAGTCCTTACCTAGG+AGG - chr5_1:22006694-22006713 Msa0723990:intron 55.0%
TGCCTCCTAGGTAAGGACTG+CGG + chr5_1:22006699-22006718 None:intergenic 55.0%
ATCCTGGACAGGCTCCTTCA+AGG - chr5_1:22007093-22007112 Msa0723990:intron 55.0%
TCCTGGACAGGCTCCTTCAA+GGG - chr5_1:22007094-22007113 Msa0723990:intron 55.0%
TTTGACGCAGTCCCCCTTGA+AGG + chr5_1:22007110-22007129 None:intergenic 55.0%
TTCAAGGGGGACTGCGTCAA+AGG - chr5_1:22007109-22007128 Msa0723990:intron 55.0%
ATAGGCCTGCTACCGTTGAG+AGG - chr5_1:22008013-22008032 Msa0723990:intron 55.0%
TCCATCCTCTCAACGGTAGC+AGG + chr5_1:22008021-22008040 None:intergenic 55.0%
!!! GGGACCTGGCTGTCTTGTTT+TGG - chr5_1:22009484-22009503 Msa0723990:intron 55.0%
GGCCCGGAAAGCCGAATTGT+TGG - chr5_1:22005933-22005952 Msa0723990:intron 60.0%
!! GCCTGGTTGGTGAAATCGGC+AGG - chr5_1:22006142-22006161 Msa0723990:intron 60.0%
CCTGGACAGGCTCCTTCAAG+GGG - chr5_1:22007095-22007114 Msa0723990:intron 60.0%
CTGGACAGGCTCCTTCAAGG+GGG - chr5_1:22007096-22007115 Msa0723990:intron 60.0%
GCCTGCTACCGTTGAGAGGA+TGG - chr5_1:22008017-22008036 Msa0723990:intron 60.0%
GCCGTCGATAGCTGCACAGA+TGG - chr5_1:22010555-22010574 Msa0723990:five_prime_UTR 60.0%
CCCCTTGAAGGAGCCTGTCC+AGG + chr5_1:22007098-22007117 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 22005088 22010881 22005088 ID=Msa0723990;Name=Msa0723990
chr5_1 mRNA 22005088 22010881 22005088 ID=Msa0723990-mRNA-1;Parent=Msa0723990;Name=Msa0723990-mRNA-1;_AED=0.05;_eAED=0.05;_QI=354|1|1|1|0.85|0.87|8|316|501
chr5_1 exon 22005088 22005433 22005088 ID=Msa0723990-mRNA-1:exon:8393;Parent=Msa0723990-mRNA-1
chr5_1 exon 22006719 22006823 22006719 ID=Msa0723990-mRNA-1:exon:8392;Parent=Msa0723990-mRNA-1
chr5_1 exon 22007693 22007764 22007693 ID=Msa0723990-mRNA-1:exon:8391;Parent=Msa0723990-mRNA-1
chr5_1 exon 22007859 22007952 22007859 ID=Msa0723990-mRNA-1:exon:8390;Parent=Msa0723990-mRNA-1
chr5_1 exon 22008801 22008865 22008801 ID=Msa0723990-mRNA-1:exon:8389;Parent=Msa0723990-mRNA-1
chr5_1 exon 22009001 22009432 22009001 ID=Msa0723990-mRNA-1:exon:8388;Parent=Msa0723990-mRNA-1
chr5_1 exon 22009526 22010233 22009526 ID=Msa0723990-mRNA-1:exon:8387;Parent=Msa0723990-mRNA-1
chr5_1 exon 22010528 22010881 22010528 ID=Msa0723990-mRNA-1:exon:8386;Parent=Msa0723990-mRNA-1
chr5_1 five_prime_UTR 22010528 22010881 22010528 ID=Msa0723990-mRNA-1:five_prime_utr;Parent=Msa0723990-mRNA-1
chr5_1 CDS 22009526 22010233 22009526 ID=Msa0723990-mRNA-1:cds;Parent=Msa0723990-mRNA-1
chr5_1 CDS 22009001 22009432 22009001 ID=Msa0723990-mRNA-1:cds;Parent=Msa0723990-mRNA-1
chr5_1 CDS 22008801 22008865 22008801 ID=Msa0723990-mRNA-1:cds;Parent=Msa0723990-mRNA-1
chr5_1 CDS 22007859 22007952 22007859 ID=Msa0723990-mRNA-1:cds;Parent=Msa0723990-mRNA-1
chr5_1 CDS 22007693 22007764 22007693 ID=Msa0723990-mRNA-1:cds;Parent=Msa0723990-mRNA-1
chr5_1 CDS 22006719 22006823 22006719 ID=Msa0723990-mRNA-1:cds;Parent=Msa0723990-mRNA-1
chr5_1 CDS 22005404 22005433 22005404 ID=Msa0723990-mRNA-1:cds;Parent=Msa0723990-mRNA-1
chr5_1 three_prime_UTR 22005088 22005403 22005088 ID=Msa0723990-mRNA-1:three_prime_utr;Parent=Msa0723990-mRNA-1
Gene Sequence

>Msa0723990

ATGGGAGAGACAACAGCATCAAATTCTGCTTTGCAAGTGTCTGTTTCTTTTGGTAGATTTGATAATGATTCACTGTCATGGGAGAGATGGTCTTCATTCTCTCCAAATAAGTATTTGGAAGAAGTTGAGAAGTGTGCTACACCTGGATCAGTAGCACAGAAGAAAGCTTACTTTGAAGCTCATTACAAGAAGATTGCGGCCCGGAAAGCCGAATTGTTGGCTCAAGAGAAGGAGATGGAGAGGGAGAGGGATTCCTTCAGATCAGAAGAAAATAATGGTATAGATCTGAGCGGTAATGGTAACGGTAACGGTAACAGTAACGCCTGTGAGACTGATTCGGAATTCGGTATTTCCAACACTCAAGGTAGTTGTACCGAGGAATGCGATAAGCAAGAAATTGAAATCAGCCTGGTTGGTGAAATCGGCAGGAGTCATGCGGATGATTTGAAGGAGGAGGAGGAAGTTGCGGTTTCGGTAGATTACCAAAGTTCATCAGTTGAGGTGGAGAATAAAGAGGTGGAAAGTGGATCACATGGTTCGTACAAGATAGACGAACCTGAAAAAGACGTGTGCATAAAACTAGAAGAAATTCTTGACGTTGAAGCTGAAGATGTGAAGGAAATTTCTCATGTTGTGTACAAAGAGACAGAAAAGGCTTCACAAGTTGAAGAAAAAGATGTGAAATTGGATCATCCAAAGAAATCTAAGGTTATCCCTGTGAATAGGGAAAATAATGCAGCCAAAACAAAAAAGAAACCAGTGGCAGCAAAACCTAAGGCATCTCAAATTTCGACACCGAAAAGTTCAAAGCCTACATCAGCTCCAACTAAAACATTGGCATCTGCCGCTTCAACTAAAAAGGGAAATCCGCAGTCCTTACCTAGGAGGCAAGTTACTTCTAGTGTGGAGAACAAAAAAGTCGCGACCAGATCTTTGCACATGTCTATGAGCTTAGGTCCAAGTAAGCCTGATCCAGTTCCTCATACTACTGAACCAGTTCCTCGTACTATGAGGAAATCTCTCATTATGGATAGTATGGGGGATAAGGACATAGTCAAACGAGCATTTAAGACTTTCCAGAAGAATTTTAACCAGCCAAAAACTTCCGTTGAAGAAGACAGATCTTCGGTAAAACAGCAGGCTCCTTCAAGGGGGACTGCGTCAAAGGTTCCAACTTCTTCAACTTTGCGGAAAGAAAATGGAAGGCCTGCTACCGTTGAGAGGATGGAGAAAAGAAGTGGAAGTGTTGTACGAACTTTGGCCCCGAAAAGTGACATTAAATCAGAGAAAGGGAAAGCGTCCTCAAGAAAAATAGAGGAAAAACCTAATACAAAAGTGGTAGAAAGAACGCGTCTCCAAACAAAATTGAAGGAGGAAAAAGAAGCAGAAATGAAAAAGCTAAAGAATGATTTCAAGGCCACACCCCTACCAACTTCTTATCGTGGTCAAAAAGTATCAAAAAGTCGCGCAGAAAAGGGAGATGCTAAGACTGAGAGCCGTCGATAG

Protein sequence

>Msa0723990

MGETTASNSALQVSVSFGRFDNDSLSWERWSSFSPNKYLEEVEKCATPGSVAQKKAYFEAHYKKIAARKAELLAQEKEMERERDSFRSEENNGIDLSGNGNGNGNSNACETDSEFGISNTQGSCTEECDKQEIEISLVGEIGRSHADDLKEEEEVAVSVDYQSSSVEVENKEVESGSHGSYKIDEPEKDVCIKLEEILDVEAEDVKEISHVVYKETEKASQVEEKDVKLDHPKKSKVIPVNRENNAAKTKKKPVAAKPKASQISTPKSSKPTSAPTKTLASAASTKKGNPQSLPRRQVTSSVENKKVATRSLHMSMSLGPSKPDPVPHTTEPVPRTMRKSLIMDSMGDKDIVKRAFKTFQKNFNQPKTSVEEDRSSVKQQAPSRGTASKVPTSSTLRKENGRPATVERMEKRSGSVVRTLAPKSDIKSEKGKASSRKIEEKPNTKVVERTRLQTKLKEEKEAEMKKLKNDFKATPLPTSYRGQKVSKSRAEKGDAKTESRR*