AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0725760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0725760 MtrunA17_Chr5g0417521 88.952 353 38 1 1 352 1 353 0.0 620
Msa0725760 MtrunA17_Chr4g0042451 60.000 350 124 5 2 349 4 339 9.79e-132 379
Msa0725760 MtrunA17_Chr2g0321461 50.204 245 104 5 8 244 38 272 4.31e-68 219
Msa0725760 MtrunA17_Chr6g0461641 49.565 230 109 3 8 233 35 261 2.55e-63 206
Msa0725760 MtrunA17_Chr8g0356501 50.267 187 75 6 8 186 30 206 1.24e-48 167
Msa0725760 MtrunA17_Chr5g0409731 44.865 185 94 4 5 186 15 194 5.42e-46 158
Msa0725760 MtrunA17_Chr2g0310011 52.174 161 68 3 8 168 28 179 1.42e-44 156
Msa0725760 MtrunA17_Chr2g0290991 42.373 236 115 7 8 230 32 259 2.60e-43 152
Msa0725760 MtrunA17_Chr7g0254981 50.345 145 63 2 14 158 49 184 1.39e-41 146
Msa0725760 MtrunA17_Chr1g0197171 50.000 142 68 1 8 149 37 175 8.42e-40 142
Msa0725760 MtrunA17_Chr2g0291021 48.387 155 69 3 15 169 49 192 8.28e-39 140
Msa0725760 MtrunA17_Chr7g0261911 43.448 145 70 2 11 155 258 390 9.27e-37 138
Msa0725760 MtrunA17_Chr7g0274471 37.566 189 94 3 14 200 217 383 4.12e-36 135
Msa0725760 MtrunA17_Chr1g0190301 41.250 160 76 3 11 168 171 314 3.86e-35 132
Msa0725760 MtrunA17_Chr1g0175091 39.597 149 76 1 11 159 254 388 9.26e-33 126
Msa0725760 MtrunA17_Chr7g0258551 35.669 157 88 1 14 170 211 354 2.22e-30 119
Msa0725760 MtrunA17_Chr7g0242521 36.424 151 68 3 11 152 9 140 2.51e-24 99.8
Msa0725760 MtrunA17_Chr1g0175071 38.255 149 73 2 8 153 170 302 3.26e-22 95.5
Msa0725760 MtrunA17_Chr1g0175081 49.180 61 31 0 11 71 18 78 7.52e-19 80.9
Msa0725760 MtrunA17_Chr3g0095611 39.831 118 64 3 15 125 19 136 1.09e-18 83.6
Msa0725760 MtrunA17_Chr1g0210911 47.778 90 37 3 16 100 23 107 1.40e-17 82.4
Msa0725760 MtrunA17_Chr1g0162931 51.316 76 34 1 16 88 19 94 1.85e-17 81.6
Msa0725760 MtrunA17_Chr7g0243081 56.604 53 23 0 16 68 72 124 1.35e-16 80.1
Msa0725760 MtrunA17_Chr4g0009901 45.455 88 43 2 15 102 168 250 1.42e-16 79.0
Msa0725760 MtrunA17_Chr5g0410741 44.872 78 43 0 16 93 220 297 2.19e-15 76.6
Msa0725760 MtrunA17_Chr4g0009981 59.259 54 21 1 15 68 116 168 2.38e-15 75.1
Msa0725760 MtrunA17_Chr2g0283951 38.710 93 50 3 7 98 83 169 4.47e-15 75.5
Msa0725760 MtrunA17_Chr8g0379121 52.830 53 25 0 16 68 112 164 5.41e-15 75.9
Msa0725760 MtrunA17_Chr6g0479431 53.571 56 26 0 16 71 203 258 8.09e-15 74.7
Msa0725760 MtrunA17_Chr2g0320231 52.830 53 25 0 16 68 98 150 8.51e-15 74.7
Msa0725760 MtrunA17_Chr2g0288601 54.000 50 23 0 16 65 72 121 1.29e-14 70.1
Msa0725760 MtrunA17_Chr2g0294911 54.286 70 25 2 11 74 207 275 2.02e-14 74.3
Msa0725760 MtrunA17_Chr8g0366281 45.070 71 39 0 16 86 174 244 3.28e-14 72.8
Msa0725760 MtrunA17_Chr5g0402631 46.512 86 42 2 15 97 214 298 3.52e-14 72.8
Msa0725760 MtrunA17_Chr3g0109981 52.632 57 27 0 16 72 275 331 6.54e-14 72.4
Msa0725760 MtrunA17_Chr1g0154261 39.773 88 45 1 16 95 127 214 7.98e-14 71.2
Msa0725760 MtrunA17_Chr1g0161431 54.237 59 26 1 11 69 196 253 8.57e-14 72.4
Msa0725760 MtrunA17_Chr4g0009851 55.556 54 23 1 15 68 169 221 8.64e-14 71.2
Msa0725760 MtrunA17_Chr4g0045361 55.172 58 26 0 12 69 271 328 9.55e-14 72.0
Msa0725760 MtrunA17_Chr4g0067981 55.932 59 25 1 11 69 211 268 1.04e-13 72.4
Msa0725760 MtrunA17_Chr7g0255711 56.364 55 23 1 15 69 91 144 1.39e-13 70.5
Msa0725760 MtrunA17_Chr2g0304841 52.542 59 27 1 11 69 209 266 1.61e-13 71.6
Msa0725760 MtrunA17_Chr4g0031961 53.448 58 26 1 12 69 128 184 2.20e-13 70.1
Msa0725760 MtrunA17_Chr4g0062921 53.448 58 27 0 12 69 232 289 5.23e-13 69.7
Msa0725760 MtrunA17_Chr1g0198601 60.000 55 22 0 15 69 211 265 5.53e-13 69.3
Msa0725760 MtrunA17_Chr4g0009991 56.250 48 20 1 18 65 70 116 1.16e-12 64.3
Msa0725760 MtrunA17_Chr7g0258531 33.577 137 78 3 15 150 213 337 5.16e-12 66.2
Msa0725760 MtrunA17_Chr7g0275401 53.704 54 24 1 15 68 192 244 6.86e-12 65.5
Msa0725760 MtrunA17_Chr5g0422621 54.545 55 25 0 15 69 198 252 1.81e-11 64.7
Msa0725760 MtrunA17_Chr5g0400241 43.939 66 36 1 17 82 313 377 9.20e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0725760 AT1G69580.1 48.689 267 118 4 6 262 25 282 1.08e-76 239
Msa0725760 AT1G69580.2 48.120 266 122 3 6 262 25 283 1.33e-74 234
Msa0725760 AT3G04030.3 53.648 233 98 4 8 235 38 265 4.12e-67 216
Msa0725760 AT5G18240.1 51.931 233 102 4 8 235 38 265 4.33e-66 214
Msa0725760 AT5G18240.4 51.931 233 102 4 8 235 38 265 4.33e-66 214
Msa0725760 AT3G04030.2 52.790 233 99 5 8 235 38 264 5.16e-64 208
Msa0725760 AT5G18240.5 51.073 233 102 5 8 235 38 263 1.04e-62 205
Msa0725760 AT3G04030.1 51.502 233 97 5 8 235 38 259 3.72e-60 198
Msa0725760 AT5G18240.2 49.785 233 101 5 8 235 38 259 2.18e-59 196
Msa0725760 AT5G18240.3 49.785 233 101 5 8 235 38 259 2.18e-59 196
Msa0725760 AT3G24120.1 46.725 229 108 5 8 226 34 258 6.32e-57 187
Msa0725760 AT4G13640.1 46.414 237 99 7 8 229 30 253 1.91e-56 186
Msa0725760 AT3G24120.2 46.121 232 108 6 8 226 34 261 9.46e-55 182
Msa0725760 AT4G13640.2 45.833 240 99 8 8 229 30 256 2.79e-54 180
Msa0725760 AT1G79430.2 56.051 157 60 3 8 164 27 174 8.20e-51 173
Msa0725760 AT5G45580.1 45.122 164 84 2 9 166 1 164 2.37e-42 148
Msa0725760 AT5G45580.2 45.122 164 84 2 9 166 17 180 3.26e-42 148
Msa0725760 AT2G01060.1 48.701 154 67 4 14 167 14 155 1.64e-40 144
Msa0725760 AT3G04030.5 48.454 194 90 4 47 235 1 189 1.44e-39 142
Msa0725760 AT3G12730.1 44.375 160 69 2 8 159 16 163 2.18e-39 140
Msa0725760 AT5G29000.1 43.448 145 73 2 14 158 187 322 2.08e-35 133
Msa0725760 AT5G29000.3 43.448 145 73 2 14 158 187 322 2.08e-35 133
Msa0725760 AT5G29000.2 43.448 145 73 2 14 158 230 365 3.80e-35 133
Msa0725760 AT3G04450.4 42.568 148 76 2 11 158 194 332 1.08e-34 131
Msa0725760 AT3G04450.2 42.568 148 76 2 11 158 194 332 1.08e-34 131
Msa0725760 AT3G04450.1 42.568 148 76 2 11 158 234 372 1.50e-34 132
Msa0725760 AT4G28610.1 43.333 150 70 3 14 161 224 360 1.63e-34 131
Msa0725760 AT3G04030.4 45.876 194 89 5 47 235 1 183 5.17e-33 125
Msa0725760 AT5G18240.6 44.845 194 91 5 47 235 1 183 6.61e-33 125
Msa0725760 AT5G06800.2 41.667 144 76 2 15 158 192 327 2.61e-32 124
Msa0725760 AT5G06800.1 42.361 144 70 3 15 158 192 322 4.65e-32 124
Msa0725760 AT3G13040.3 42.657 143 75 2 11 153 237 372 1.34e-30 121
Msa0725760 AT3G13040.1 42.657 143 75 2 11 153 237 372 1.34e-30 121
Msa0725760 AT3G13040.2 42.657 143 75 2 11 153 237 372 1.34e-30 121
Msa0725760 AT2G20400.2 39.865 148 78 2 15 162 231 367 4.36e-29 116
Msa0725760 AT2G20400.1 38.514 148 79 1 15 162 231 366 5.42e-29 115
Msa0725760 AT1G79430.1 51.695 118 48 3 47 164 1 109 1.40e-27 110
Msa0725760 AT3G04450.3 57.377 61 26 0 11 71 234 294 7.10e-21 92.0
Msa0725760 AT2G01060.2 44.915 118 53 4 50 167 1 106 8.50e-21 90.5
Msa0725760 AT5G29000.4 56.897 58 25 0 14 71 230 287 2.03e-20 90.9
Msa0725760 AT2G06020.1 54.098 61 28 0 11 71 82 142 2.16e-18 84.7
Msa0725760 AT5G06800.3 56.140 57 25 0 15 71 192 248 3.98e-18 83.6
Msa0725760 AT1G14600.1 58.491 53 22 0 16 68 24 76 1.65e-17 81.6
Msa0725760 AT2G02060.2 52.459 61 29 0 16 76 30 90 9.19e-17 79.3
Msa0725760 AT2G02060.1 52.459 61 29 0 16 76 30 90 9.19e-17 79.3
Msa0725760 AT3G12730.2 37.190 121 56 2 47 159 1 109 2.00e-16 76.6
Msa0725760 AT1G32240.1 34.426 122 75 1 16 132 214 335 2.64e-16 79.7
Msa0725760 AT1G32240.2 34.426 122 75 1 16 132 214 335 3.16e-16 79.3
Msa0725760 AT2G38300.1 56.604 53 23 0 16 68 55 107 1.57e-15 77.0
Msa0725760 AT4G04605.1 52.830 53 25 0 16 68 15 67 1.83e-15 75.1
Msa0725760 AT2G42660.1 50.000 64 29 1 16 79 51 111 5.43e-15 74.3
Msa0725760 AT2G40260.1 50.847 59 29 0 16 74 83 141 1.04e-14 75.1
Msa0725760 AT4G17695.1 45.570 79 37 1 16 88 165 243 1.58e-14 73.9
Msa0725760 AT5G16560.1 52.632 57 27 0 16 72 220 276 2.83e-14 73.9
Msa0725760 AT5G59570.2 53.448 58 26 1 12 69 138 194 3.48e-14 72.8
Msa0725760 AT5G59570.1 53.448 58 26 1 12 69 138 194 3.48e-14 72.8
Msa0725760 AT5G42630.2 38.636 88 54 0 16 103 106 193 5.24e-14 70.9
Msa0725760 AT2G40970.1 55.172 58 25 1 12 69 102 158 5.52e-14 71.2
Msa0725760 AT5G05090.1 56.364 55 23 1 15 69 81 134 6.15e-14 71.6
Msa0725760 AT3G10760.1 56.364 55 23 1 15 69 105 158 8.29e-14 72.0
Msa0725760 AT5G42630.1 38.636 88 54 0 16 103 106 193 9.03e-14 71.2
Msa0725760 AT3G16857.3 56.364 55 23 1 15 69 167 220 1.04e-13 72.8
Msa0725760 AT3G16857.2 56.364 55 23 1 15 69 237 290 1.16e-13 72.8
Msa0725760 AT3G16857.1 56.364 55 23 1 15 69 237 290 1.16e-13 72.4
Msa0725760 AT3G46640.2 54.545 55 24 1 15 69 144 197 1.22e-13 71.2
Msa0725760 AT3G46640.1 54.545 55 24 1 15 69 144 197 1.22e-13 71.2
Msa0725760 AT3G46640.3 54.545 55 24 1 15 69 144 197 1.42e-13 71.2
Msa0725760 AT1G25550.1 55.172 58 26 0 12 69 206 263 3.52e-13 70.1
Msa0725760 AT1G49560.1 60.000 55 22 0 15 69 192 246 3.63e-13 70.1
Msa0725760 AT1G68670.1 56.897 58 25 0 12 69 212 269 6.25e-13 69.3
Msa0725760 AT3G25790.1 49.206 63 32 0 20 82 201 263 6.35e-13 69.3
Msa0725760 AT4G04580.1 45.588 68 36 1 1 68 1 67 1.32e-12 65.9
Msa0725760 AT2G03500.1 51.724 58 28 0 12 69 230 287 2.99e-12 67.8
Msa0725760 AT4G37180.1 52.830 53 25 0 17 69 212 264 3.08e-12 67.4
Msa0725760 AT4G37180.2 52.830 53 25 0 17 69 219 271 3.49e-12 67.4
Msa0725760 AT5G58080.1 54.237 59 26 1 11 69 190 247 8.06e-12 67.0
Msa0725760 AT2G01760.3 50.909 55 26 1 15 69 135 188 9.33e-12 65.9
Msa0725760 AT1G67710.3 40.244 82 44 1 17 93 121 202 1.08e-11 66.2
Msa0725760 AT1G67710.2 40.244 82 44 1 17 93 130 211 1.25e-11 65.9
Msa0725760 AT1G67710.1 40.244 82 44 1 17 93 195 276 1.33e-11 66.2
Msa0725760 AT2G01760.1 50.909 55 26 1 15 69 200 253 1.35e-11 65.5
Msa0725760 AT5G45580.3 35.455 110 65 2 63 166 16 125 1.63e-11 63.9
Msa0725760 AT2G01760.2 50.909 55 26 1 15 69 228 281 1.96e-11 65.1
Msa0725760 AT1G13300.1 46.269 67 36 0 15 81 181 247 2.43e-11 64.7
Msa0725760 AT5G44190.1 50.000 54 26 1 15 68 147 199 5.08e-11 63.9
Msa0725760 AT3G62670.1 46.774 62 29 1 11 68 207 268 5.10e-11 63.9
Msa0725760 AT5G44190.2 50.000 54 26 1 15 68 147 199 6.90e-11 63.2
Msa0725760 AT1G49560.2 50.000 64 30 1 15 78 192 253 8.48e-11 62.4
Msa0725760 AT1G25550.2 51.852 54 26 0 12 65 206 259 9.75e-11 62.4

Find 74 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGATTTGCATCAATATTA+TGG 0.263621 5_1:+25570373 None:intergenic
ATTACTCAGTGATTTGATTC+TGG 0.268350 5_1:+25569579 None:intergenic
TACTTTGATTCTGCATGTTT+TGG 0.275597 5_1:+25570345 None:intergenic
AATATTGATGCAAATCTAAA+AGG 0.293329 5_1:-25570369 Msa0725760:five_prime_UTR
TGGAACTTCTTTGTGTTCAT+TGG 0.299674 5_1:-25568893 Msa0725760:CDS
TTCACTTGAATTGCCACTAA+TGG 0.314380 5_1:-25568782 Msa0725760:CDS
CAGAGTAGGTTTCTAGTTGT+TGG 0.316123 5_1:+25569917 None:intergenic
AAAATGGGAATACCTGTAAA+TGG 0.318364 5_1:+25570037 None:intergenic
ATGTTGAGAATTATTCATTA+AGG 0.320144 5_1:-25568636 Msa0725760:CDS
TAATTGCATCAATGAATCTT+TGG 0.326033 5_1:+25570264 None:intergenic
AAACATTCAATAGAAGAAAT+AGG 0.327972 5_1:-25568829 Msa0725760:CDS
ATCACCCTCATAATACTCTT+TGG 0.337237 5_1:+25570096 None:intergenic
AGTCCATGTCATTCTGATAT+TGG 0.338286 5_1:+25568554 None:intergenic
CTATGATCTCACTTCATATC+AGG 0.348012 5_1:+25570441 None:intergenic
ATGAATCTTTGGTGAAGTTC+AGG 0.353886 5_1:+25570275 None:intergenic
CCATCTCAAGAGCCATTTAC+AGG 0.357774 5_1:-25570049 Msa0725760:intron
AATGAAGAAACTAAATTTGA+TGG 0.358160 5_1:-25568664 Msa0725760:CDS
AATTATATAAACCATCTTCA+TGG 0.364378 5_1:+25568478 None:intergenic
ATGCAAAACCAAGGCTCAAA+TGG 0.392729 5_1:-25570301 Msa0725760:CDS
AAGGCGCAGGAGGCCCTCTC+TGG 0.408389 5_1:-25569069 Msa0725760:CDS
AGTAGGTATGAAATGGCTTA+TGG 0.409541 5_1:-25570498 Msa0725760:five_prime_UTR
GGATACAATTCTTCACCAAT+TGG 0.409885 5_1:-25569048 Msa0725760:CDS
GCATTGTTCATCACAGCTCT+TGG 0.424894 5_1:+25569625 None:intergenic
TCATGCTCTAGAAGTGCAAA+TGG 0.437951 5_1:-25569432 Msa0725760:CDS
AAATGAAAGTAGGTATGAAA+TGG 0.439392 5_1:-25570505 Msa0725760:five_prime_UTR
AAAAGACGAACTGTCTCAAT+TGG 0.442895 5_1:-25569013 Msa0725760:CDS
GATTCTGTTAGATCTGAGAT+TGG 0.449789 5_1:+25568958 None:intergenic
TCTGAGTGCATGGCCATTAG+TGG 0.458598 5_1:+25568769 None:intergenic
AAACTATGAGGAGAGGAAAC+AGG 0.459208 5_1:-25568920 Msa0725760:CDS
TCAGGAGTCCATTTGAGCCT+TGG 0.464509 5_1:+25570293 None:intergenic
ATGAGGGTGATGGAAATTCC+AGG 0.471652 5_1:-25570084 Msa0725760:CDS
ATTGATGCAATTAATCAACT+TGG 0.481050 5_1:-25570254 Msa0725760:CDS
ATCTTCTGAAATCTCAGAAA+GGG 0.484544 5_1:-25568857 Msa0725760:CDS
AGATCTGAGATTGGAGAACT+TGG 0.485427 5_1:+25568967 None:intergenic
CAACACCAAAGAGTATTATG+AGG 0.491136 5_1:-25570101 Msa0725760:CDS
CAGCTTCGAATTGAAGCTCA+AGG 0.493163 5_1:-25569117 Msa0725760:CDS
CATTAGTGGGGTTATGTTGG+AGG 0.495407 5_1:+25570467 None:intergenic
CATCTTCTGAAATCTCAGAA+AGG 0.495942 5_1:-25568858 Msa0725760:CDS
TTTACAATCGGTACTAATGA+AGG 0.497419 5_1:-25569088 Msa0725760:CDS
AAACATTAGTGGGGTTATGT+TGG 0.503401 5_1:+25570464 None:intergenic
TTCATATCAGGAAACATTAG+TGG 0.509137 5_1:+25570453 None:intergenic
ATTTAAGTAATGAAGTCAAT+GGG 0.515023 5_1:-25568696 Msa0725760:CDS
AATTTAAGTAATGAAGTCAA+TGG 0.515931 5_1:-25568697 Msa0725760:CDS
TCAAGGAAAATATTTACAAT+CGG 0.522599 5_1:-25569100 Msa0725760:CDS
AGATGGTACAAAGTAAGTCC+TGG 0.523577 5_1:+25570066 None:intergenic
GAAACTTAATGAACAAATTG+AGG 0.524227 5_1:-25569399 Msa0725760:intron
GATGCAATTAATCAACTTGG+AGG 0.524466 5_1:-25570251 Msa0725760:CDS
TGATTTCTCTTCTGAGTGCA+TGG 0.534501 5_1:+25568759 None:intergenic
TCATATCAGGAAACATTAGT+GGG 0.542603 5_1:+25570454 None:intergenic
CGAAGCACAGACACAGACAT+TGG 0.544995 5_1:+25568727 None:intergenic
CCTGTAAATGGCTCTTGAGA+TGG 0.548306 5_1:+25570049 None:intergenic
ATTTGCATCAATATTATGGA+AGG 0.552271 5_1:+25570377 None:intergenic
AAAGAGTATTATGAGGGTGA+TGG 0.553041 5_1:-25570094 Msa0725760:CDS
AGGGTTAAGTTTAAACTATG+AGG 0.556660 5_1:-25568932 Msa0725760:CDS
TAAGTTTAAACTATGAGGAG+AGG 0.577698 5_1:-25568927 Msa0725760:CDS
TGCAGTAGAGAAATCAGTCA+AGG 0.579806 5_1:-25569605 Msa0725760:CDS
ATCGGTACTAATGAAGGCGC+AGG 0.585210 5_1:-25569082 Msa0725760:CDS
AAGTGCAAATGGAAGTAGAG+AGG 0.592961 5_1:-25569421 Msa0725760:CDS
GGGGTGAAGAGAATCTATGA+TGG 0.595666 5_1:+25570596 None:intergenic
GCAGTAGAGAAATCAGTCAA+GGG 0.599573 5_1:-25569604 Msa0725760:CDS
GGTTGTAGAAATATAGACTT+GGG 0.601442 5_1:-25569945 Msa0725760:intron
GTGAAGAATTGTATCCAGAG+AGG 0.609917 5_1:+25569055 None:intergenic
TGGTTGTAGAAATATAGACT+TGG 0.620704 5_1:-25569946 Msa0725760:intron
TCAGATCTAACAGAATCAAG+AGG 0.622910 5_1:-25568952 Msa0725760:CDS
AACACCAAAGAGTATTATGA+GGG 0.627296 5_1:-25570100 Msa0725760:CDS
TGAAGAATTGTATCCAGAGA+GGG 0.628116 5_1:+25569056 None:intergenic
CAGATCTAACAGAATCAAGA+GGG 0.636389 5_1:-25568951 Msa0725760:CDS
GAGGAGAGGAAACAGGACAA+TGG 0.639420 5_1:-25568913 Msa0725760:CDS
TATTCATTAAGGAAAAGATG+TGG 0.648508 5_1:-25568625 Msa0725760:CDS
GGTACTAATGAAGGCGCAGG+AGG 0.653630 5_1:-25569079 Msa0725760:CDS
CAGTAGAGAAATCAGTCAAG+GGG 0.658005 5_1:-25569603 Msa0725760:CDS
TAGCCAATATCAGAATGACA+TGG 0.678287 5_1:-25568557 Msa0725760:CDS
CATATCAGGAAACATTAGTG+GGG 0.706486 5_1:+25570455 None:intergenic
TATCCACTGATGCAAAACCA+AGG 0.720964 5_1:-25570310 Msa0725760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATGAAAAAAAATAGTA+AGG + chr5_1:25568869-25568888 None:intergenic 10.0%
!! AAATATGAAAAAAAATAGTA+AGG + chr5_1:25568869-25568888 None:intergenic 10.0%
!! AAAAAGAAATAAATGAAAGT+AGG - chr5_1:25568544-25568563 Msa0725760:CDS 15.0%
!! TACAATATCATTACAAAAAT+GGG + chr5_1:25569040-25569059 None:intergenic 15.0%
!! TTACAATATCATTACAAAAA+TGG + chr5_1:25569041-25569060 None:intergenic 15.0%
!!! GTAATGATATTGTAATTTTT+TGG - chr5_1:25569046-25569065 Msa0725760:CDS 15.0%
!! ATTTGAATACATAATGTATT+TGG + chr5_1:25569854-25569873 None:intergenic 15.0%
!! AAAAAGAAATAAATGAAAGT+AGG - chr5_1:25568544-25568563 Msa0725760:CDS 15.0%
!! TACAATATCATTACAAAAAT+GGG + chr5_1:25569040-25569059 None:intergenic 15.0%
!! TTACAATATCATTACAAAAA+TGG + chr5_1:25569041-25569060 None:intergenic 15.0%
!!! GTAATGATATTGTAATTTTT+TGG - chr5_1:25569046-25569065 Msa0725760:CDS 15.0%
!! ATTTGAATACATAATGTATT+TGG + chr5_1:25569854-25569873 None:intergenic 15.0%
!!! TTTTTTCTTTGACTTAAATG+GGG + chr5_1:25568485-25568504 None:intergenic 20.0%
!!! CTTTTTTCTTTGACTTAAAT+GGG + chr5_1:25568486-25568505 None:intergenic 20.0%
!!! ACTTTTTTCTTTGACTTAAA+TGG + chr5_1:25568487-25568506 None:intergenic 20.0%
!! TTAGATTTGCATCAATATTA+TGG + chr5_1:25568689-25568708 None:intergenic 20.0%
!! AATATTGATGCAAATCTAAA+AGG - chr5_1:25568690-25568709 Msa0725760:CDS 20.0%
!! AATCCAAATGATTGATTATT+TGG - chr5_1:25569371-25569390 Msa0725760:intron 20.0%
!!! TAAGTACATTTTTTGATTGA+CGG - chr5_1:25569733-25569752 Msa0725760:intron 20.0%
!!! ACTATTTTTTGCCAAAATTA+CGG + chr5_1:25569786-25569805 None:intergenic 20.0%
!! TCAAGGAAAATATTTACAAT+CGG - chr5_1:25569959-25569978 Msa0725760:intron 20.0%
!! AAACATTCAATAGAAGAAAT+AGG - chr5_1:25570230-25570249 Msa0725760:intron 20.0%
!! AATTTAAGTAATGAAGTCAA+TGG - chr5_1:25570362-25570381 Msa0725760:five_prime_UTR 20.0%
!! ATTTAAGTAATGAAGTCAAT+GGG - chr5_1:25570363-25570382 Msa0725760:five_prime_UTR 20.0%
!! AATGAAGAAACTAAATTTGA+TGG - chr5_1:25570395-25570414 Msa0725760:five_prime_UTR 20.0%
!! ATGTTGAGAATTATTCATTA+AGG - chr5_1:25570423-25570442 Msa0725760:five_prime_UTR 20.0%
!! AATTATATAAACCATCTTCA+TGG + chr5_1:25570584-25570603 None:intergenic 20.0%
!!! TTTTTTCTTTGACTTAAATG+GGG + chr5_1:25568485-25568504 None:intergenic 20.0%
!!! CTTTTTTCTTTGACTTAAAT+GGG + chr5_1:25568486-25568505 None:intergenic 20.0%
!!! ACTTTTTTCTTTGACTTAAA+TGG + chr5_1:25568487-25568506 None:intergenic 20.0%
!! TTAGATTTGCATCAATATTA+TGG + chr5_1:25568689-25568708 None:intergenic 20.0%
!! AATATTGATGCAAATCTAAA+AGG - chr5_1:25568690-25568709 Msa0725760:CDS 20.0%
!! AATCCAAATGATTGATTATT+TGG - chr5_1:25569371-25569390 Msa0725760:intron 20.0%
!!! TAAGTACATTTTTTGATTGA+CGG - chr5_1:25569733-25569752 Msa0725760:intron 20.0%
!!! ACTATTTTTTGCCAAAATTA+CGG + chr5_1:25569786-25569805 None:intergenic 20.0%
!! TCAAGGAAAATATTTACAAT+CGG - chr5_1:25569959-25569978 Msa0725760:intron 20.0%
!! AAACATTCAATAGAAGAAAT+AGG - chr5_1:25570230-25570249 Msa0725760:intron 20.0%
!! AATTTAAGTAATGAAGTCAA+TGG - chr5_1:25570362-25570381 Msa0725760:five_prime_UTR 20.0%
!! ATTTAAGTAATGAAGTCAAT+GGG - chr5_1:25570363-25570382 Msa0725760:five_prime_UTR 20.0%
!! AATGAAGAAACTAAATTTGA+TGG - chr5_1:25570395-25570414 Msa0725760:five_prime_UTR 20.0%
!! ATGTTGAGAATTATTCATTA+AGG - chr5_1:25570423-25570442 Msa0725760:five_prime_UTR 20.0%
!! AATTATATAAACCATCTTCA+TGG + chr5_1:25570584-25570603 None:intergenic 20.0%
!!! GCTCAATTTTAAGTCTTAAA+AGG + chr5_1:25568419-25568438 None:intergenic 25.0%
! AAATGAAAGTAGGTATGAAA+TGG - chr5_1:25568554-25568573 Msa0725760:CDS 25.0%
! ATTTGCATCAATATTATGGA+AGG + chr5_1:25568685-25568704 None:intergenic 25.0%
! TAATTGCATCAATGAATCTT+TGG + chr5_1:25568798-25568817 None:intergenic 25.0%
! ATTGATGCAATTAATCAACT+TGG - chr5_1:25568805-25568824 Msa0725760:CDS 25.0%
! TCAAATTGTGTATGTTAATG+TGG - chr5_1:25568929-25568948 Msa0725760:CDS 25.0%
!!! GTGACTTTTCATATTTTTAC+TGG - chr5_1:25569093-25569112 Msa0725760:CDS 25.0%
! CCGATAATTTAAAAATCAGA+CGG + chr5_1:25569314-25569333 None:intergenic 25.0%
!! CCGTCTGATTTTTAAATTAT+CGG - chr5_1:25569311-25569330 Msa0725760:intron 25.0%
! ATGCCAAATAATCAATCATT+TGG + chr5_1:25569377-25569396 None:intergenic 25.0%
! ATTATTTGGCATAACATTGA+TGG - chr5_1:25569385-25569404 Msa0725760:intron 25.0%
! GAAACTTAATGAACAAATTG+AGG - chr5_1:25569660-25569679 Msa0725760:intron 25.0%
!!! TTTGTCAGTTTTATTCCAAT+TGG + chr5_1:25570029-25570048 None:intergenic 25.0%
! TATTCATTAAGGAAAAGATG+TGG - chr5_1:25570434-25570453 Msa0725760:five_prime_UTR 25.0%
!!! GCTCAATTTTAAGTCTTAAA+AGG + chr5_1:25568419-25568438 None:intergenic 25.0%
! AAATGAAAGTAGGTATGAAA+TGG - chr5_1:25568554-25568573 Msa0725760:CDS 25.0%
! ATTTGCATCAATATTATGGA+AGG + chr5_1:25568685-25568704 None:intergenic 25.0%
! TAATTGCATCAATGAATCTT+TGG + chr5_1:25568798-25568817 None:intergenic 25.0%
! ATTGATGCAATTAATCAACT+TGG - chr5_1:25568805-25568824 Msa0725760:CDS 25.0%
! TCAAATTGTGTATGTTAATG+TGG - chr5_1:25568929-25568948 Msa0725760:CDS 25.0%
!!! GTGACTTTTCATATTTTTAC+TGG - chr5_1:25569093-25569112 Msa0725760:CDS 25.0%
! CCGATAATTTAAAAATCAGA+CGG + chr5_1:25569314-25569333 None:intergenic 25.0%
!! CCGTCTGATTTTTAAATTAT+CGG - chr5_1:25569311-25569330 Msa0725760:intron 25.0%
! ATGCCAAATAATCAATCATT+TGG + chr5_1:25569377-25569396 None:intergenic 25.0%
! ATTATTTGGCATAACATTGA+TGG - chr5_1:25569385-25569404 Msa0725760:intron 25.0%
! GAAACTTAATGAACAAATTG+AGG - chr5_1:25569660-25569679 Msa0725760:intron 25.0%
!!! TTTGTCAGTTTTATTCCAAT+TGG + chr5_1:25570029-25570048 None:intergenic 25.0%
! TATTCATTAAGGAAAAGATG+TGG - chr5_1:25570434-25570453 Msa0725760:five_prime_UTR 25.0%
! GTCAAAGAAAAAAGTGTAGA+AGG - chr5_1:25568492-25568511 Msa0725760:exon 30.0%
TCATATCAGGAAACATTAGT+GGG + chr5_1:25568608-25568627 None:intergenic 30.0%
TTCATATCAGGAAACATTAG+TGG + chr5_1:25568609-25568628 None:intergenic 30.0%
! TACTTTGATTCTGCATGTTT+TGG + chr5_1:25568717-25568736 None:intergenic 30.0%
!! AACACCAAAGAGTATTATGA+GGG - chr5_1:25568959-25568978 Msa0725760:CDS 30.0%
AAAATGGGAATACCTGTAAA+TGG + chr5_1:25569025-25569044 None:intergenic 30.0%
TGGTTGTAGAAATATAGACT+TGG - chr5_1:25569113-25569132 Msa0725760:CDS 30.0%
GGTTGTAGAAATATAGACTT+GGG - chr5_1:25569114-25569133 Msa0725760:CDS 30.0%
!!! TTGTTTTTTGTTGTCAGAGT+AGG + chr5_1:25569159-25569178 None:intergenic 30.0%
TACTCTGACAACAAAAAACA+AGG - chr5_1:25569158-25569177 Msa0725760:intron 30.0%
ATTACTCAGTGATTTGATTC+TGG + chr5_1:25569483-25569502 None:intergenic 30.0%
!!! TTTTGTTTTTGCCAGAAACA+TGG - chr5_1:25569597-25569616 Msa0725760:CDS 30.0%
TATGCACTAAATGTTGCATA+AGG - chr5_1:25569873-25569892 Msa0725760:intron 30.0%
TTTACAATCGGTACTAATGA+AGG - chr5_1:25569971-25569990 Msa0725760:intron 30.0%
AGGGTTAAGTTTAAACTATG+AGG - chr5_1:25570127-25570146 Msa0725760:intron 30.0%
TAAGTTTAAACTATGAGGAG+AGG - chr5_1:25570132-25570151 Msa0725760:intron 30.0%
!! ATCTTCTGAAATCTCAGAAA+GGG - chr5_1:25570202-25570221 Msa0725760:intron 30.0%
! ACTTTTATGAACCATGAAGA+TGG - chr5_1:25570570-25570589 Msa0725760:five_prime_UTR 30.0%
! GTCAAAGAAAAAAGTGTAGA+AGG - chr5_1:25568492-25568511 Msa0725760:exon 30.0%
TCATATCAGGAAACATTAGT+GGG + chr5_1:25568608-25568627 None:intergenic 30.0%
TTCATATCAGGAAACATTAG+TGG + chr5_1:25568609-25568628 None:intergenic 30.0%
! TACTTTGATTCTGCATGTTT+TGG + chr5_1:25568717-25568736 None:intergenic 30.0%
!! AACACCAAAGAGTATTATGA+GGG - chr5_1:25568959-25568978 Msa0725760:CDS 30.0%
AAAATGGGAATACCTGTAAA+TGG + chr5_1:25569025-25569044 None:intergenic 30.0%
TGGTTGTAGAAATATAGACT+TGG - chr5_1:25569113-25569132 Msa0725760:CDS 30.0%
GGTTGTAGAAATATAGACTT+GGG - chr5_1:25569114-25569133 Msa0725760:CDS 30.0%
!!! TTGTTTTTTGTTGTCAGAGT+AGG + chr5_1:25569159-25569178 None:intergenic 30.0%
TACTCTGACAACAAAAAACA+AGG - chr5_1:25569158-25569177 Msa0725760:intron 30.0%
ATTACTCAGTGATTTGATTC+TGG + chr5_1:25569483-25569502 None:intergenic 30.0%
!!! TTTTGTTTTTGCCAGAAACA+TGG - chr5_1:25569597-25569616 Msa0725760:CDS 30.0%
TATGCACTAAATGTTGCATA+AGG - chr5_1:25569873-25569892 Msa0725760:intron 30.0%
TTTACAATCGGTACTAATGA+AGG - chr5_1:25569971-25569990 Msa0725760:intron 30.0%
AGGGTTAAGTTTAAACTATG+AGG - chr5_1:25570127-25570146 Msa0725760:intron 30.0%
TAAGTTTAAACTATGAGGAG+AGG - chr5_1:25570132-25570151 Msa0725760:intron 30.0%
!! ATCTTCTGAAATCTCAGAAA+GGG - chr5_1:25570202-25570221 Msa0725760:intron 30.0%
! ACTTTTATGAACCATGAAGA+TGG - chr5_1:25570570-25570589 Msa0725760:five_prime_UTR 30.0%
AGTAGGTATGAAATGGCTTA+TGG - chr5_1:25568561-25568580 Msa0725760:CDS 35.0%
AAACATTAGTGGGGTTATGT+TGG + chr5_1:25568598-25568617 None:intergenic 35.0%
CATATCAGGAAACATTAGTG+GGG + chr5_1:25568607-25568626 None:intergenic 35.0%
CTATGATCTCACTTCATATC+AGG + chr5_1:25568621-25568640 None:intergenic 35.0%
ATGAATCTTTGGTGAAGTTC+AGG + chr5_1:25568787-25568806 None:intergenic 35.0%
GATGCAATTAATCAACTTGG+AGG - chr5_1:25568808-25568827 Msa0725760:CDS 35.0%
!! CAACACCAAAGAGTATTATG+AGG - chr5_1:25568958-25568977 Msa0725760:CDS 35.0%
ATCACCCTCATAATACTCTT+TGG + chr5_1:25568966-25568985 None:intergenic 35.0%
!! AAAGAGTATTATGAGGGTGA+TGG - chr5_1:25568965-25568984 Msa0725760:CDS 35.0%
! AAAACAAGGTGATGACTTGT+AGG - chr5_1:25569172-25569191 Msa0725760:intron 35.0%
! AAACAAGGTGATGACTTGTA+GGG - chr5_1:25569173-25569192 Msa0725760:intron 35.0%
ACCATCTGATCTCAAAATTG+TGG - chr5_1:25569241-25569260 Msa0725760:intron 35.0%
!!! ACCACAATTTTGAGATCAGA+TGG + chr5_1:25569245-25569264 None:intergenic 35.0%
TTGTGGTCGAGATTGTTTAT+AGG - chr5_1:25569258-25569277 Msa0725760:intron 35.0%
!! CATAACATTGATGGTCCTTT+TGG - chr5_1:25569394-25569413 Msa0725760:intron 35.0%
ATGAGATATCTCCATGTTTC+TGG + chr5_1:25569611-25569630 None:intergenic 35.0%
!! TTTTTGATTGACGGTGAGTT+TGG - chr5_1:25569742-25569761 Msa0725760:intron 35.0%
! TGTATTTGGTGAAATCACAG+TGG + chr5_1:25569840-25569859 None:intergenic 35.0%
!! TCAAGTTGGATGTTGATTTC+AGG - chr5_1:25569905-25569924 Msa0725760:CDS 35.0%
TGAAGAATTGTATCCAGAGA+GGG + chr5_1:25570006-25570025 None:intergenic 35.0%
GGATACAATTCTTCACCAAT+TGG - chr5_1:25570011-25570030 Msa0725760:intron 35.0%
AAAAGACGAACTGTCTCAAT+TGG - chr5_1:25570046-25570065 Msa0725760:intron 35.0%
! GATTCTGTTAGATCTGAGAT+TGG + chr5_1:25570104-25570123 None:intergenic 35.0%
TCAGATCTAACAGAATCAAG+AGG - chr5_1:25570107-25570126 Msa0725760:CDS 35.0%
CAGATCTAACAGAATCAAGA+GGG - chr5_1:25570108-25570127 Msa0725760:intron 35.0%
TGGAACTTCTTTGTGTTCAT+TGG - chr5_1:25570166-25570185 Msa0725760:intron 35.0%
!! CATCTTCTGAAATCTCAGAA+AGG - chr5_1:25570201-25570220 Msa0725760:intron 35.0%
TTCACTTGAATTGCCACTAA+TGG - chr5_1:25570277-25570296 Msa0725760:CDS 35.0%
TAGCCAATATCAGAATGACA+TGG - chr5_1:25570502-25570521 Msa0725760:five_prime_UTR 35.0%
AGTCCATGTCATTCTGATAT+TGG + chr5_1:25570508-25570527 None:intergenic 35.0%
AGTAGGTATGAAATGGCTTA+TGG - chr5_1:25568561-25568580 Msa0725760:CDS 35.0%
AAACATTAGTGGGGTTATGT+TGG + chr5_1:25568598-25568617 None:intergenic 35.0%
CATATCAGGAAACATTAGTG+GGG + chr5_1:25568607-25568626 None:intergenic 35.0%
CTATGATCTCACTTCATATC+AGG + chr5_1:25568621-25568640 None:intergenic 35.0%
ATGAATCTTTGGTGAAGTTC+AGG + chr5_1:25568787-25568806 None:intergenic 35.0%
GATGCAATTAATCAACTTGG+AGG - chr5_1:25568808-25568827 Msa0725760:CDS 35.0%
!! CAACACCAAAGAGTATTATG+AGG - chr5_1:25568958-25568977 Msa0725760:CDS 35.0%
ATCACCCTCATAATACTCTT+TGG + chr5_1:25568966-25568985 None:intergenic 35.0%
!! AAAGAGTATTATGAGGGTGA+TGG - chr5_1:25568965-25568984 Msa0725760:CDS 35.0%
! AAAACAAGGTGATGACTTGT+AGG - chr5_1:25569172-25569191 Msa0725760:intron 35.0%
! AAACAAGGTGATGACTTGTA+GGG - chr5_1:25569173-25569192 Msa0725760:intron 35.0%
ACCATCTGATCTCAAAATTG+TGG - chr5_1:25569241-25569260 Msa0725760:intron 35.0%
!!! ACCACAATTTTGAGATCAGA+TGG + chr5_1:25569245-25569264 None:intergenic 35.0%
TTGTGGTCGAGATTGTTTAT+AGG - chr5_1:25569258-25569277 Msa0725760:intron 35.0%
!! CATAACATTGATGGTCCTTT+TGG - chr5_1:25569394-25569413 Msa0725760:intron 35.0%
ATGAGATATCTCCATGTTTC+TGG + chr5_1:25569611-25569630 None:intergenic 35.0%
!! TTTTTGATTGACGGTGAGTT+TGG - chr5_1:25569742-25569761 Msa0725760:intron 35.0%
! TGTATTTGGTGAAATCACAG+TGG + chr5_1:25569840-25569859 None:intergenic 35.0%
!! TCAAGTTGGATGTTGATTTC+AGG - chr5_1:25569905-25569924 Msa0725760:CDS 35.0%
TGAAGAATTGTATCCAGAGA+GGG + chr5_1:25570006-25570025 None:intergenic 35.0%
GGATACAATTCTTCACCAAT+TGG - chr5_1:25570011-25570030 Msa0725760:intron 35.0%
AAAAGACGAACTGTCTCAAT+TGG - chr5_1:25570046-25570065 Msa0725760:intron 35.0%
! GATTCTGTTAGATCTGAGAT+TGG + chr5_1:25570104-25570123 None:intergenic 35.0%
TCAGATCTAACAGAATCAAG+AGG - chr5_1:25570107-25570126 Msa0725760:CDS 35.0%
CAGATCTAACAGAATCAAGA+GGG - chr5_1:25570108-25570127 Msa0725760:intron 35.0%
TGGAACTTCTTTGTGTTCAT+TGG - chr5_1:25570166-25570185 Msa0725760:intron 35.0%
!! CATCTTCTGAAATCTCAGAA+AGG - chr5_1:25570201-25570220 Msa0725760:intron 35.0%
TTCACTTGAATTGCCACTAA+TGG - chr5_1:25570277-25570296 Msa0725760:CDS 35.0%
TAGCCAATATCAGAATGACA+TGG - chr5_1:25570502-25570521 Msa0725760:five_prime_UTR 35.0%
AGTCCATGTCATTCTGATAT+TGG + chr5_1:25570508-25570527 None:intergenic 35.0%
TATCCACTGATGCAAAACCA+AGG - chr5_1:25568749-25568768 Msa0725760:CDS 40.0%
ATGCAAAACCAAGGCTCAAA+TGG - chr5_1:25568758-25568777 Msa0725760:CDS 40.0%
AGATGGTACAAAGTAAGTCC+TGG + chr5_1:25568996-25569015 None:intergenic 40.0%
!! CAGAGTAGGTTTCTAGTTGT+TGG + chr5_1:25569145-25569164 None:intergenic 40.0%
TCTGTGTATACTGCACCAAA+AGG + chr5_1:25569412-25569431 None:intergenic 40.0%
TGCAGTAGAGAAATCAGTCA+AGG - chr5_1:25569454-25569473 Msa0725760:intron 40.0%
GCAGTAGAGAAATCAGTCAA+GGG - chr5_1:25569455-25569474 Msa0725760:intron 40.0%
CAGTAGAGAAATCAGTCAAG+GGG - chr5_1:25569456-25569475 Msa0725760:intron 40.0%
!! TCATGCTCTAGAAGTGCAAA+TGG - chr5_1:25569627-25569646 Msa0725760:CDS 40.0%
AAGTGCAAATGGAAGTAGAG+AGG - chr5_1:25569638-25569657 Msa0725760:CDS 40.0%
! ATGGTGTGCTACCGTAATTT+TGG - chr5_1:25569772-25569791 Msa0725760:intron 40.0%
! TAAGGACGTGTTGATCAAGT+TGG - chr5_1:25569891-25569910 Msa0725760:intron 40.0%
GTGAAGAATTGTATCCAGAG+AGG + chr5_1:25570007-25570026 None:intergenic 40.0%
! AGATCTGAGATTGGAGAACT+TGG + chr5_1:25570095-25570114 None:intergenic 40.0%
AAACTATGAGGAGAGGAAAC+AGG - chr5_1:25570139-25570158 Msa0725760:intron 40.0%
TGATTTCTCTTCTGAGTGCA+TGG + chr5_1:25570303-25570322 None:intergenic 40.0%
TATCCACTGATGCAAAACCA+AGG - chr5_1:25568749-25568768 Msa0725760:CDS 40.0%
ATGCAAAACCAAGGCTCAAA+TGG - chr5_1:25568758-25568777 Msa0725760:CDS 40.0%
AGATGGTACAAAGTAAGTCC+TGG + chr5_1:25568996-25569015 None:intergenic 40.0%
!! CAGAGTAGGTTTCTAGTTGT+TGG + chr5_1:25569145-25569164 None:intergenic 40.0%
TCTGTGTATACTGCACCAAA+AGG + chr5_1:25569412-25569431 None:intergenic 40.0%
TGCAGTAGAGAAATCAGTCA+AGG - chr5_1:25569454-25569473 Msa0725760:intron 40.0%
GCAGTAGAGAAATCAGTCAA+GGG - chr5_1:25569455-25569474 Msa0725760:intron 40.0%
CAGTAGAGAAATCAGTCAAG+GGG - chr5_1:25569456-25569475 Msa0725760:intron 40.0%
!! TCATGCTCTAGAAGTGCAAA+TGG - chr5_1:25569627-25569646 Msa0725760:CDS 40.0%
AAGTGCAAATGGAAGTAGAG+AGG - chr5_1:25569638-25569657 Msa0725760:CDS 40.0%
! ATGGTGTGCTACCGTAATTT+TGG - chr5_1:25569772-25569791 Msa0725760:intron 40.0%
! TAAGGACGTGTTGATCAAGT+TGG - chr5_1:25569891-25569910 Msa0725760:intron 40.0%
GTGAAGAATTGTATCCAGAG+AGG + chr5_1:25570007-25570026 None:intergenic 40.0%
! AGATCTGAGATTGGAGAACT+TGG + chr5_1:25570095-25570114 None:intergenic 40.0%
AAACTATGAGGAGAGGAAAC+AGG - chr5_1:25570139-25570158 Msa0725760:intron 40.0%
TGATTTCTCTTCTGAGTGCA+TGG + chr5_1:25570303-25570322 None:intergenic 40.0%
GGGGTGAAGAGAATCTATGA+TGG + chr5_1:25568466-25568485 None:intergenic 45.0%
CATTAGTGGGGTTATGTTGG+AGG + chr5_1:25568595-25568614 None:intergenic 45.0%
!! ATGAGGGTGATGGAAATTCC+AGG - chr5_1:25568975-25568994 Msa0725760:CDS 45.0%
CCTGTAAATGGCTCTTGAGA+TGG + chr5_1:25569013-25569032 None:intergenic 45.0%
CCATCTCAAGAGCCATTTAC+AGG - chr5_1:25569010-25569029 Msa0725760:CDS 45.0%
GCATTGTTCATCACAGCTCT+TGG + chr5_1:25569437-25569456 None:intergenic 45.0%
CGGTGAGTTTGGTAGAATCA+TGG - chr5_1:25569753-25569772 Msa0725760:intron 45.0%
CAGCTTCGAATTGAAGCTCA+AGG - chr5_1:25569942-25569961 Msa0725760:intron 45.0%
GGGGTGAAGAGAATCTATGA+TGG + chr5_1:25568466-25568485 None:intergenic 45.0%
CATTAGTGGGGTTATGTTGG+AGG + chr5_1:25568595-25568614 None:intergenic 45.0%
!! ATGAGGGTGATGGAAATTCC+AGG - chr5_1:25568975-25568994 Msa0725760:CDS 45.0%
CCTGTAAATGGCTCTTGAGA+TGG + chr5_1:25569013-25569032 None:intergenic 45.0%
CCATCTCAAGAGCCATTTAC+AGG - chr5_1:25569010-25569029 Msa0725760:CDS 45.0%
GCATTGTTCATCACAGCTCT+TGG + chr5_1:25569437-25569456 None:intergenic 45.0%
CGGTGAGTTTGGTAGAATCA+TGG - chr5_1:25569753-25569772 Msa0725760:intron 45.0%
CAGCTTCGAATTGAAGCTCA+AGG - chr5_1:25569942-25569961 Msa0725760:intron 45.0%
!!! ATATTTTTAAATTTTTTTCT+AGG - chr5_1:25568516-25568535 Msa0725760:CDS 5.0%
!!! AAAATAATTTTAAATTGAAA+TGG - chr5_1:25569548-25569567 Msa0725760:intron 5.0%
!!! ATATTTTTAAATTTTTTTCT+AGG - chr5_1:25568516-25568535 Msa0725760:CDS 5.0%
!!! AAAATAATTTTAAATTGAAA+TGG - chr5_1:25569548-25569567 Msa0725760:intron 5.0%
!!! GAGCCTTGGTTTTGCATCAG+TGG + chr5_1:25568755-25568774 None:intergenic 50.0%
TCAGGAGTCCATTTGAGCCT+TGG + chr5_1:25568769-25568788 None:intergenic 50.0%
! ATCGGTACTAATGAAGGCGC+AGG - chr5_1:25569977-25569996 Msa0725760:intron 50.0%
GAGGAGAGGAAACAGGACAA+TGG - chr5_1:25570146-25570165 Msa0725760:intron 50.0%
TCTGAGTGCATGGCCATTAG+TGG + chr5_1:25570293-25570312 None:intergenic 50.0%
CGAAGCACAGACACAGACAT+TGG + chr5_1:25570335-25570354 None:intergenic 50.0%
!!! GAGCCTTGGTTTTGCATCAG+TGG + chr5_1:25568755-25568774 None:intergenic 50.0%
TCAGGAGTCCATTTGAGCCT+TGG + chr5_1:25568769-25568788 None:intergenic 50.0%
! ATCGGTACTAATGAAGGCGC+AGG - chr5_1:25569977-25569996 Msa0725760:intron 50.0%
GAGGAGAGGAAACAGGACAA+TGG - chr5_1:25570146-25570165 Msa0725760:intron 50.0%
TCTGAGTGCATGGCCATTAG+TGG + chr5_1:25570293-25570312 None:intergenic 50.0%
CGAAGCACAGACACAGACAT+TGG + chr5_1:25570335-25570354 None:intergenic 50.0%
! GGTACTAATGAAGGCGCAGG+AGG - chr5_1:25569980-25569999 Msa0725760:intron 55.0%
! GGTACTAATGAAGGCGCAGG+AGG - chr5_1:25569980-25569999 Msa0725760:intron 55.0%
AAGGCGCAGGAGGCCCTCTC+TGG - chr5_1:25569990-25570009 Msa0725760:intron 70.0%
AAGGCGCAGGAGGCCCTCTC+TGG - chr5_1:25569990-25570009 Msa0725760:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 25568407 25570674 25568407 ID=Msa0725760;Name=Msa0725760
chr5_1 mRNA 25568407 25570674 25568407 ID=Msa0725760-mRNA-1;Parent=Msa0725760;Name=Msa0725760-mRNA-1;_AED=0.10;_eAED=0.10;_QI=314|1|1|1|1|1|6|88|352
chr5_1 exon 25568407 25569154 25568407 ID=Msa0725760-mRNA-1:exon:9246;Parent=Msa0725760-mRNA-1
chr5_1 exon 25569400 25569469 25569400 ID=Msa0725760-mRNA-1:exon:9245;Parent=Msa0725760-mRNA-1
chr5_1 exon 25569584 25569659 25569584 ID=Msa0725760-mRNA-1:exon:9244;Parent=Msa0725760-mRNA-1
chr5_1 exon 25569902 25569959 25569902 ID=Msa0725760-mRNA-1:exon:9243;Parent=Msa0725760-mRNA-1
chr5_1 exon 25570050 25570126 25570050 ID=Msa0725760-mRNA-1:exon:9242;Parent=Msa0725760-mRNA-1
chr5_1 exon 25570243 25570674 25570243 ID=Msa0725760-mRNA-1:exon:9241;Parent=Msa0725760-mRNA-1
chr5_1 five_prime_UTR 25570361 25570674 25570361 ID=Msa0725760-mRNA-1:five_prime_utr;Parent=Msa0725760-mRNA-1
chr5_1 CDS 25570243 25570360 25570243 ID=Msa0725760-mRNA-1:cds;Parent=Msa0725760-mRNA-1
chr5_1 CDS 25570050 25570126 25570050 ID=Msa0725760-mRNA-1:cds;Parent=Msa0725760-mRNA-1
chr5_1 CDS 25569902 25569959 25569902 ID=Msa0725760-mRNA-1:cds;Parent=Msa0725760-mRNA-1
chr5_1 CDS 25569584 25569659 25569584 ID=Msa0725760-mRNA-1:cds;Parent=Msa0725760-mRNA-1
chr5_1 CDS 25569400 25569469 25569400 ID=Msa0725760-mRNA-1:cds;Parent=Msa0725760-mRNA-1
chr5_1 CDS 25568495 25569154 25568495 ID=Msa0725760-mRNA-1:cds;Parent=Msa0725760-mRNA-1
chr5_1 three_prime_UTR 25568407 25568494 25568407 ID=Msa0725760-mRNA-1:three_prime_utr;Parent=Msa0725760-mRNA-1
Gene Sequence

>Msa0725760

ATGCAGAATCAAAGTATGCATTTTGTTCTATCCACTGATGCAAAACCAAGGCTCAAATGGACTCCTGAACTTCACCAAAGATTCATTGATGCAATTAATCAACTTGGAGGTGCAGCTAAAGCAACACCAAAGAGTATTATGAGGGTGATGGAAATTCCAGGACTTACTTTGTACCATCTCAAGAGCCATTTACAGAAATATAGACTTGGGAAAAGCCAACAACTAGAAACCTACTCTGACAACAAAAAACAAGTATACACAGAAACCAAGAGCTGTGATGAACAATGCAGTAGAGAAATCAGTCAAGGGGACCAGAATCAAATCACTGAAAACATGGAGATATCTCATGCTCTAGAAGTGCAAATGGAAGTAGAGAGGAAACTTAATGAACAAATTGAGGTGCAGAAACATTTGCAGCTTCGAATTGAAGCTCAAGGAAAATATTTACAATCGGTACTAATGAAGGCGCAGGAGGCCCTCTCTGGATACAATTCTTCACCAATTGGAATAAAACTGACAAAAGACGAACTGTCTCAATTGGTTACTATGATCAACAATGCATGTCCAAGTTCTCCAATCTCAGATCTAACAGAATCAAGAGGGTTAAGTTTAAACTATGAGGAGAGGAAACAGGACAATGGAACTTCTTTGTGTTCATTGGAAAGTTCTTTGACATCTTCTGAAATCTCAGAAAGGGAAGATAAACATTCAATAGAAGAAATAGGAGACTTCAAAAATTCTAGTGCTATTTCACTTGAATTGCCACTAATGGCCATGCACTCAGAAGAGAAATCATTGTCGTGTCCAATGTCTGTGTCTGTGCTTCGTAGCGATAATTTAAGTAATGAAGTCAATGGGAGAAAGAGAAATGAAGAAACTAAATTTGATGGTAGCTATGTTGAGAATTATTCATTAAGGAAAAGATGTGGCAACAAGTTGAAGAAAGCTAAGTTGTCAGAAAAGTTTGACTTGAATAGCCAATATCAGAATGACATGGACTCAACAAGTTCAAAAATGTTATTAGACTTAAATTGCAGTTTAAACTTTTATGAACCATGA
Protein sequence

>Msa0725760

MQNQSMHFVLSTDAKPRLKWTPELHQRFIDAINQLGGAAKATPKSIMRVMEIPGLTLYHLKSHLQKYRLGKSQQLETYSDNKKQVYTETKSCDEQCSREISQGDQNQITENMEISHALEVQMEVERKLNEQIEVQKHLQLRIEAQGKYLQSVLMKAQEALSGYNSSPIGIKLTKDELSQLVTMINNACPSSPISDLTESRGLSLNYEERKQDNGTSLCSLESSLTSSEISEREDKHSIEEIGDFKNSSAISLELPLMAMHSEEKSLSCPMSVSVLRSDNLSNEVNGRKRNEETKFDGSYVENYSLRKRCGNKLKKAKLSEKFDLNSQYQNDMDSTSSKMLLDLNCSLNFYEP*